Genome ID：GCA_041431785.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
1	24	34	41.63

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
JCEBJLIM_15	9607	11526	tet(M)	ARO:3000186	tet(M)	95.77	100.00	AB039845.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
JCEBJLIM_15	9607	11526	tet(M)	Doxycycline, Tetracycline, Minocycline	99.84	100.00	X04388

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
JCEBJLIM_15	9607	11523	tet(M)	tetracycline resistance ribosomal protection protein Tet(M)	EXACTX	100.00	100.00	WP_002414694.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
JCEBJLIM_5	65495	67279	STU_RS16230	0.0	Capsule	Immune modulation	96.75	100.00	WP_011226325
JCEBJLIM_5	69535	70344	STU_RS16245	0.0	Capsule	Immune modulation	95.68	100.00	WP_002948020
JCEBJLIM_5	77462	78313	rfbD	0.0	Capsule	Immune modulation	95.19	100.00	WP_014621820
JCEBJLIM_2	168637	169377	STER_RS05305	0.0	Capsule	Immune modulation	95.01	100.00	WP_011681174
JCEBJLIM_2	168637	169377	STU_RS14635	0.0	Capsule	Immune modulation	94.33	100.00	WP_011226046
JCEBJLIM_2	165734	167194	STU_RS14650	0.0	Capsule	Immune modulation	94.11	100.14	WP_011226049
JCEBJLIM_1	295121	295714	STR_RS05880	0.0	Capsule	Immune modulation	94.11	100.00	WP_011226149
JCEBJLIM_5	75090	76361	STU_RS16265	0.0	Capsule	Immune modulation	94.10	99.76	WP_011226331
JCEBJLIM_2	165734	167194	STER_RS05320	0.0	Capsule	Immune modulation	93.98	100.00	WP_011681177
JCEBJLIM_1	295121	295714	STER_RS06030	0.0	Capsule	Immune modulation	93.94	100.00	WP_011226149
JCEBJLIM_1	295121	295714	STU_RS15260	0.0	Capsule	Immune modulation	93.94	100.00	WP_011226149
JCEBJLIM_2	169434	170801	STU_RS14630	0.0	Capsule	Immune modulation	93.93	100.00	WP_011226045
JCEBJLIM_2	168637	169372	STR_RS05250	0.0	Capsule	Immune modulation	93.75	98.13	WP_011227246
JCEBJLIM_2	169434	170799	STER_RS05300	0.0	Capsule	Immune modulation	93.63	99.85	WP_011681173
JCEBJLIM_5	68330	69535	STU_RS16240	0.0	Capsule	Immune modulation	93.53	100.00	WP_011226326
JCEBJLIM_2	165734	167194	STR_RS05265	0.0	Capsule	Immune modulation	93.22	100.14	WP_041827043
JCEBJLIM_5	70328	71284	STU_RS16250	0.0	Capsule	Immune modulation	92.69	100.00	WP_011226328
JCEBJLIM_5	74132	75087	STU_RS16260	0.0	Capsule	Immune modulation	92.47	94.56	WP_011226330
JCEBJLIM_5	71281	72429	STU_RS16255	0.0	Capsule	Immune modulation	92.08	100.00	WP_041828290
JCEBJLIM_2	167195	167926	STU_RS14645	0.0	Capsule	Immune modulation	91.94	100.00	WP_011226048
JCEBJLIM_2	167195	167926	STER_RS05315	0.0	Capsule	Immune modulation	91.53	100.00	WP_011681176
JCEBJLIM_2	274640	276298	fbp54	0.0	FBPs	Adherence	91.51	99.94	WP_011227179
JCEBJLIM_1	294252	295121	rfbA	0.0	Capsule	Immune modulation	91.49	100.00	WP_011681286
JCEBJLIM_5	67276	68310	STU_RS16235	0.0	Capsule	Immune modulation	91.39	99.05	WP_002948022
JCEBJLIM_2	167195	167926	STR_RS05260	0.0	Capsule	Immune modulation	90.98	100.00	WP_011227248
JCEBJLIM_14	20936	21775	cbpD	0.0	Autolysin	Exoenzyme	88.57	100.00	WP_011226733
JCEBJLIM_19	14312	15322	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	88.45	99.80	WP_002986042
JCEBJLIM_1	112856	114159	eno	0.0	Streptococcal enolase	Exoenzyme	88.24	99.54	WP_000022832
JCEBJLIM_2	167935	168627	STR_RS05255	0.0	Capsule	Immune modulation	88.04	99.86	WP_011227247
JCEBJLIM_2	167935	168627	STU_RS14640	0.0	Capsule	Immune modulation	88.04	99.86	WP_011226047
JCEBJLIM_2	167935	168627	STER_RS05310	0.0	Capsule	Immune modulation	87.46	99.86	WP_011681175
JCEBJLIM_6	127190	127951	srtA	0.0	Sortase A	Exoenzyme	84.53	99.87	-
JCEBJLIM_1	295922	296968	rfbB	0.0	Capsule	Immune modulation	83.78	99.90	WP_002263087
JCEBJLIM_4	1709	2992	tig/ropA	0.0	Trigger factor	Stress survival	80.84	99.61	WP_000107753
JCEBJLIM_2	179940	180525	SPD_RS01775	2.89e-145	Capsule	Immune modulation	82.79	96.53	WP_001819836

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
JCEBJLIM_6	130640	131623	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	96.04	100.00	AAK75326
JCEBJLIM_6	119056	117983	MntE	0.0	manganese homeostasis	95.53	99.72	ABF32167
JCEBJLIM_7	82761	80455	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.41	99.22	AAK74619
JCEBJLIM_9	25963	27444	SPD_0310	0.0	UPF0371 protein SPD_0310	93.32	100.00	ABJ54480
JCEBJLIM_6	99509	97263	metE	0.0	methionine biosynthesis enzymes	92.92	100.00	AAK74738
JCEBJLIM_1	20990	21958	spr0084	0.0	pathogenitcity related	92.88	98.48	AAK98888
JCEBJLIM_14	36377	35406	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.67	100.00	ABF36968
JCEBJLIM_11	9310	2747	PrtA	0.0	serine protease	90.00	101.96	ABJ55268
JCEBJLIM_1	267385	269115	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	89.95	100.00	AAK34199
JCEBJLIM_5	93511	91526	uvrB	0.0	excinuclease ABC, B subunit	89.58	99.85	AE014259_2
JCEBJLIM_5	121992	120841	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.58	99.74	AAL00050
JCEBJLIM_3	172311	170833	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.63	100.00	ADE32434
JCEBJLIM_1	112856	114157	Eno	0.0	enolase	86.44	99.77	ABP90468
JCEBJLIM_3	156956	155064	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.58	98.90	ABP91129
JCEBJLIM_6	94340	96049	PGM	0.0	phosphoglucomutase	84.94	99.65	ACH87041
JCEBJLIM_14	2011	920	recA	0.0	DNA recombination and repair	84.64	95.36	AAL00560
JCEBJLIM_3	28541	29551	pdh	0.0	pyruvate dehydrogenase	83.38	99.70	ABP91006
JCEBJLIM_2	260425	261786	mnmE	0.0	central tRNA-modifying GTPase	82.89	99.56	ABP90420
JCEBJLIM_1	98446	99336	bglB	3.31e-177	putative phospho--glucosidase	87.20	99.66	AAK33487
JCEBJLIM_6	55087	56037	SP_0676	2.06e-170	transcription facot	81.39	98.45	AAK74821
JCEBJLIM_6	97072	96215	metF	7.36e-170	methionine biosynthesis enzymes	87.76	99.31	AAK74739
JCEBJLIM_11	27287	26616	rr01	1.28e-127	response regulator	84.82	99.56	CAB54566
JCEBJLIM_2	120099	120803	covR	1.30e-126	responder protein	85.53	100.00	AAK71319
JCEBJLIM_6	90373	89702	ciaR	1.39e-125	two component system response regulator	86.16	99.12	AIK75708
JCEBJLIM_6	90373	89705	CiaR	2.58e-125	two-component response regulator	87.44	99.55	AAK74935
JCEBJLIM_2	120099	120803	walR	2.96e-120	DNA-binding response regulator	82.13	100.00	ANC99504
JCEBJLIM_4	139560	140246	CovR	4.22e-120	serves to repress GAS virulence factor-encoding genes	81.66	100.00	ACE75886
JCEBJLIM_14	745	350	SpxA2	3.95e-76	transcriptional regulator	91.67	100.00	ERL21461
JCEBJLIM_2	248958	248557	SpxA1	3.24e-69	transcriptional regulator	82.09	100.00	ERL19273
JCEBJLIM_13	6097	5684	GrpE	3.46e-68	protein grpE	81.88	80.59	ABP89267
JCEBJLIM_4	162771	163058	spr0479	5.11e-48	essential gene	85.42	98.97	AAK99283
JCEBJLIM_10	15315	15061	spr1327	2.97e-45	essential gene	92.94	100.00	AAL00131
JCEBJLIM_3	116281	116544	spr0175	1.02e-42	pathogenitcity related	85.23	100.00	AAK98979
JCEBJLIM_3	117105	117371	spr0177	2.27e-41	essential gene	83.15	88.12	AAK98981
JCEBJLIM_4	3159	3650	RopE (M5005_Spy_1611)	9.34e-73	probable DNA-directed RNA polymerase subunit delta	82.93	85.86	AAK34603
JCEBJLIM_7	82761	80461	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	83.09	98.08	MYN69560
JCEBJLIM_3	64963	63944	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	97.06	100.00	ABJ55451