Genome ID:GCA_041514275.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 25 | 29 | 38.29 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HGJNPOLC_1 | 43685 | 44524 | cbpD | 0.0 | Autolysin | Exoenzyme | 100.00 | 100.00 | WP_011226733 |
| HGJNPOLC_1 | 1088906 | 1089775 | rfbA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681286 |
| HGJNPOLC_1 | 1088313 | 1088906 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| HGJNPOLC_1 | 1292800 | 1293609 | STU_RS16245 | 0.0 | Capsule | Immune modulation | 99.88 | 100.00 | WP_002948020 |
| HGJNPOLC_1 | 1088313 | 1088906 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| HGJNPOLC_1 | 1293593 | 1294549 | STU_RS16250 | 0.0 | Capsule | Immune modulation | 99.79 | 100.00 | WP_011226328 |
| HGJNPOLC_1 | 1294546 | 1295694 | STU_RS16255 | 0.0 | Capsule | Immune modulation | 99.74 | 100.00 | WP_041828290 |
| HGJNPOLC_1 | 1088313 | 1088906 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| HGJNPOLC_1 | 1299190 | 1300041 | rfbD | 0.0 | Capsule | Immune modulation | 99.65 | 100.00 | WP_014621820 |
| HGJNPOLC_1 | 857581 | 859239 | fbp54 | 0.0 | FBPs | Adherence | 99.58 | 100.00 | WP_011227179 |
| HGJNPOLC_1 | 1291595 | 1292800 | STU_RS16240 | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | WP_011226326 |
| HGJNPOLC_1 | 1295803 | 1296813 | STU_RS16260 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011226330 |
| HGJNPOLC_1 | 1288739 | 1290523 | STU_RS16230 | 0.0 | Capsule | Immune modulation | 99.44 | 100.00 | WP_011226325 |
| HGJNPOLC_1 | 1290520 | 1291575 | STU_RS16235 | 0.0 | Capsule | Immune modulation | 99.43 | 100.00 | WP_002948022 |
| HGJNPOLC_1 | 1125121 | 1125882 | srtA | 0.0 | Sortase A | Exoenzyme | 99.21 | 100.00 | - |
| HGJNPOLC_1 | 953108 | 954523 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 98.52 | 100.00 | WP_011681165 |
| HGJNPOLC_1 | 965514 | 966245 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.36 | 100.00 | WP_011226048 |
| HGJNPOLC_1 | 1032195 | 1032983 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 98.36 | 99.75 | - |
| HGJNPOLC_1 | 965514 | 966245 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 98.09 | 100.00 | WP_011681176 |
| HGJNPOLC_1 | 965514 | 966245 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 97.68 | 100.00 | WP_011227248 |
| HGJNPOLC_1 | 966246 | 967706 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 97.54 | 100.00 | WP_011681177 |
| HGJNPOLC_1 | 1296816 | 1298087 | STU_RS16265 | 0.0 | Capsule | Immune modulation | 97.48 | 99.76 | WP_011226331 |
| HGJNPOLC_1 | 964063 | 964803 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 97.30 | 100.00 | WP_011226046 |
| HGJNPOLC_1 | 964063 | 964803 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 96.90 | 100.00 | WP_011681174 |
| HGJNPOLC_1 | 964068 | 964803 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 96.33 | 98.13 | WP_011227246 |
| HGJNPOLC_1 | 966246 | 967706 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 96.23 | 100.21 | WP_011226049 |
| HGJNPOLC_1 | 962639 | 964006 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 95.47 | 100.00 | WP_011226045 |
| HGJNPOLC_1 | 966246 | 967706 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 95.41 | 100.21 | WP_041827043 |
| HGJNPOLC_1 | 964813 | 965505 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 95.40 | 99.86 | WP_011227247 |
| HGJNPOLC_1 | 964813 | 965505 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 95.40 | 99.86 | WP_011226047 |
| HGJNPOLC_1 | 962641 | 964006 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 94.22 | 99.85 | WP_011681173 |
| HGJNPOLC_1 | 964813 | 965505 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.47 | 100.00 | WP_011681175 |
| HGJNPOLC_1 | 609826 | 611129 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.09 | 99.54 | WP_000022832 |
| HGJNPOLC_1 | 1589679 | 1590689 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.44 | 99.41 | WP_002986042 |
| HGJNPOLC_1 | 149172 | 150455 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.73 | 99.77 | WP_000107753 |
| HGJNPOLC_1 | 1086838 | 1087884 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HGJNPOLC_1 | 1128569 | 1129552 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.82 | 100.00 | AAK75326 |
| HGJNPOLC_1 | 717562 | 718635 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| HGJNPOLC_1 | 1466712 | 1469015 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| HGJNPOLC_1 | 522893 | 523861 | spr0084 | 0.0 | pathogenitcity related | 92.57 | 98.48 | AAK98888 |
| HGJNPOLC_1 | 739505 | 741751 | metE | 0.0 | methionine biosynthesis enzymes | 91.99 | 100.00 | AAK74738 |
| HGJNPOLC_1 | 1198465 | 1199946 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 91.50 | 100.00 | ABJ54480 |
| HGJNPOLC_1 | 63314 | 64306 | recA | 0.0 | DNA recombination and repair | 91.24 | 85.31 | AAL00560 |
| HGJNPOLC_1 | 27203 | 28174 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| HGJNPOLC_1 | 1349999 | 1348848 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| HGJNPOLC_1 | 1315031 | 1313043 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.84 | 100.00 | AE014259_2 |
| HGJNPOLC_1 | 1112348 | 1110618 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 87.87 | 100.00 | AAK34199 |
| HGJNPOLC_1 | 1783714 | 1782236 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.42 | 100.00 | ADE32434 |
| HGJNPOLC_1 | 1768525 | 1766633 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 86.05 | 98.90 | ABP91129 |
| HGJNPOLC_1 | 609826 | 611127 | Eno | 0.0 | enolase | 85.98 | 99.77 | ABP90468 |
| HGJNPOLC_1 | 744676 | 742967 | PGM | 0.0 | phosphoglucomutase | 83.89 | 99.65 | ACH87041 |
| HGJNPOLC_1 | 1632690 | 1633700 | pdh | 0.0 | pyruvate dehydrogenase | 82.79 | 99.70 | ABP91006 |
| HGJNPOLC_1 | 885728 | 884367 | mnmE | 0.0 | central tRNA-modifying GTPase | 81.80 | 99.56 | ABP90420 |
| HGJNPOLC_1 | 1687557 | 1685665 | PepO | 0.0 | endopeptidase | 80.19 | 100.00 | ABF32980 |
| HGJNPOLC_1 | 595399 | 596289 | bglB | 3.73e-178 | putative phospho--glucosidase | 88.55 | 99.66 | AAK33487 |
| HGJNPOLC_1 | 802641 | 801706 | SP_0676 | 7.15e-168 | transcription facot | 81.73 | 96.89 | AAK74821 |
| HGJNPOLC_1 | 741943 | 742800 | metF | 4.50e-164 | methionine biosynthesis enzymes | 86.01 | 99.31 | AAK74739 |
| HGJNPOLC_1 | 1004510 | 1003806 | covR | 4.24e-131 | responder protein | 85.53 | 100.00 | AAK71319 |
| HGJNPOLC_1 | 1179497 | 1178826 | rr01 | 5.40e-123 | response regulator | 83.04 | 99.56 | CAB54566 |
| HGJNPOLC_1 | 1004510 | 1003806 | walR | 1.79e-121 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| HGJNPOLC_1 | 748630 | 749298 | CiaR | 9.11e-118 | two-component response regulator | 84.75 | 99.55 | AAK74935 |
| HGJNPOLC_1 | 307291 | 307977 | CovR | 9.93e-118 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| HGJNPOLC_1 | 748630 | 749301 | ciaR | 9.88e-116 | two component system response regulator | 82.59 | 99.12 | AIK75708 |
| HGJNPOLC_1 | 64603 | 64998 | SpxA2 | 3.59e-74 | transcriptional regulator | 90.91 | 100.00 | ERL21461 |
| HGJNPOLC_1 | 897087 | 897488 | SpxA1 | 3.64e-66 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| HGJNPOLC_1 | 150613 | 151113 | RopE (M5005_Spy_1611) | 4.77e-75 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| HGJNPOLC_1 | 1466712 | 1469009 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| HGJNPOLC_1 | 1673082 | 1672063 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |