Genome ID:GCA_041514285.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 27 | 31 | 41.11 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GNCMBPMD_1 | 1185746 | 1186615 | rfbA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681286 |
| GNCMBPMD_1 | 1185153 | 1185746 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| GNCMBPMD_1 | 1418574 | 1419383 | STU_RS16245 | 0.0 | Capsule | Immune modulation | 99.88 | 100.00 | WP_002948020 |
| GNCMBPMD_1 | 1185153 | 1185746 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| GNCMBPMD_1 | 1419367 | 1420323 | STU_RS16250 | 0.0 | Capsule | Immune modulation | 99.79 | 100.00 | WP_011226328 |
| GNCMBPMD_1 | 1420320 | 1421468 | STU_RS16255 | 0.0 | Capsule | Immune modulation | 99.74 | 100.00 | WP_041828290 |
| GNCMBPMD_1 | 1185153 | 1185746 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| GNCMBPMD_1 | 1424964 | 1425815 | rfbD | 0.0 | Capsule | Immune modulation | 99.65 | 100.00 | WP_014621820 |
| GNCMBPMD_1 | 944368 | 946026 | fbp54 | 0.0 | FBPs | Adherence | 99.58 | 100.00 | WP_011227179 |
| GNCMBPMD_1 | 1417369 | 1418574 | STU_RS16240 | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | WP_011226326 |
| GNCMBPMD_1 | 43689 | 44528 | cbpD | 0.0 | Autolysin | Exoenzyme | 99.52 | 100.00 | WP_011226733 |
| GNCMBPMD_1 | 1058591 | 1059190 | STR_RS05245 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_196767671 |
| GNCMBPMD_1 | 1421577 | 1422587 | STU_RS16260 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011226330 |
| GNCMBPMD_1 | 1414513 | 1416297 | STU_RS16230 | 0.0 | Capsule | Immune modulation | 99.44 | 100.00 | WP_011226325 |
| GNCMBPMD_1 | 1416294 | 1417349 | STU_RS16235 | 0.0 | Capsule | Immune modulation | 99.43 | 100.00 | WP_002948022 |
| GNCMBPMD_1 | 1037891 | 1039306 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 99.15 | 100.00 | WP_011681165 |
| GNCMBPMD_1 | 1059342 | 1060077 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 98.91 | 99.33 | WP_011681174 |
| GNCMBPMD_1 | 1221940 | 1222701 | srtA | 0.0 | Sortase A | Exoenzyme | 98.82 | 100.00 | - |
| GNCMBPMD_1 | 1060788 | 1061519 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 98.77 | 100.00 | WP_011681176 |
| GNCMBPMD_1 | 1061520 | 1062974 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 98.76 | 100.00 | WP_041827043 |
| GNCMBPMD_1 | 1057467 | 1058426 | STR_RS05240 | 0.0 | Capsule | Immune modulation | 98.54 | 100.00 | WP_041827042 |
| GNCMBPMD_1 | 1060788 | 1061519 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.50 | 100.00 | WP_011226048 |
| GNCMBPMD_1 | 1127498 | 1128291 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 98.36 | 100.25 | - |
| GNCMBPMD_1 | 1060788 | 1061519 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 98.36 | 100.00 | WP_011227248 |
| GNCMBPMD_1 | 1059328 | 1060077 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 98.27 | 100.00 | WP_011227246 |
| GNCMBPMD_1 | 1061520 | 1062974 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 98.21 | 100.00 | WP_011226049 |
| GNCMBPMD_1 | 1059342 | 1060077 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 98.10 | 99.33 | WP_011226046 |
| GNCMBPMD_1 | 1422590 | 1423861 | STU_RS16265 | 0.0 | Capsule | Immune modulation | 97.48 | 99.76 | WP_011226331 |
| GNCMBPMD_1 | 1061520 | 1062974 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 96.65 | 99.79 | WP_011681177 |
| GNCMBPMD_1 | 539947 | 544841 | SAG_RS09105 | 0.0 | Agglutinin receptor | Adherence | 92.87 | 99.98 | WP_000167699 |
| GNCMBPMD_1 | 539899 | 544841 | SSU98_0978 | 0.0 | Agglutinin receptor | Adherence | 92.82 | 99.78 | YP_001200536 |
| GNCMBPMD_1 | 539899 | 544841 | SSU05_0965 | 0.0 | Agglutinin receptor | Adherence | 92.80 | 99.78 | YP_001198331 |
| GNCMBPMD_1 | 1060087 | 1060779 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.90 | 100.00 | WP_011681175 |
| GNCMBPMD_1 | 1060087 | 1060779 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 89.75 | 100.00 | WP_011226047 |
| GNCMBPMD_1 | 1060087 | 1060779 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 89.47 | 100.00 | WP_011227247 |
| GNCMBPMD_1 | 687957 | 689260 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.10 | 99.46 | WP_000022832 |
| GNCMBPMD_1 | 1716791 | 1717801 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.54 | 99.41 | WP_002986042 |
| GNCMBPMD_1 | 152335 | 153618 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.73 | 99.77 | WP_000107753 |
| GNCMBPMD_1 | 1183678 | 1184724 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GNCMBPMD_1 | 1225388 | 1226371 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.82 | 100.00 | AAK75326 |
| GNCMBPMD_1 | 798151 | 799224 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| GNCMBPMD_1 | 539926 | 544836 | B9H01_RS04765 | 0.0 | glucan-binding protein | 93.40 | 99.63 | AUS90958 |
| GNCMBPMD_1 | 604271 | 605239 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| GNCMBPMD_1 | 1593630 | 1595933 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| GNCMBPMD_1 | 1314752 | 1316233 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.31 | 100.00 | ABJ54480 |
| GNCMBPMD_1 | 820093 | 822339 | metE | 0.0 | methionine biosynthesis enzymes | 91.72 | 100.00 | AAK74738 |
| GNCMBPMD_1 | 72298 | 73296 | recA | 0.0 | DNA recombination and repair | 90.99 | 85.82 | AAL00560 |
| GNCMBPMD_1 | 27206 | 28177 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| GNCMBPMD_1 | 1478602 | 1477451 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| GNCMBPMD_1 | 1440785 | 1438797 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.99 | 100.00 | AE014259_2 |
| GNCMBPMD_1 | 1209189 | 1207459 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 88.04 | 100.00 | AAK34199 |
| GNCMBPMD_1 | 1925097 | 1923619 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.22 | 100.00 | ADE32434 |
| GNCMBPMD_1 | 687957 | 689258 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| GNCMBPMD_1 | 1909908 | 1908016 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 86.05 | 98.90 | ABP91129 |
| GNCMBPMD_1 | 825264 | 823555 | PGM | 0.0 | phosphoglucomutase | 83.71 | 99.65 | ACH87041 |
| GNCMBPMD_1 | 1759286 | 1760296 | pdh | 0.0 | pyruvate dehydrogenase | 83.09 | 99.70 | ABP91006 |
| GNCMBPMD_1 | 972440 | 971079 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| GNCMBPMD_1 | 1811330 | 1809438 | PepO | 0.0 | endopeptidase | 80.19 | 100.00 | ABF32980 |
| GNCMBPMD_1 | 673522 | 674412 | bglB | 1.39e-178 | putative phospho--glucosidase | 88.89 | 99.66 | AAK33487 |
| GNCMBPMD_1 | 886320 | 885382 | SP_0676 | 2.46e-167 | transcription facot | 81.15 | 97.20 | AAK74821 |
| GNCMBPMD_1 | 822531 | 823388 | metF | 1.60e-164 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| GNCMBPMD_1 | 1099817 | 1099113 | covR | 4.58e-131 | responder protein | 85.53 | 100.00 | AAK71319 |
| GNCMBPMD_1 | 1273560 | 1272889 | rr01 | 3.14e-124 | response regulator | 83.93 | 99.56 | CAB54566 |
| GNCMBPMD_1 | 1099817 | 1099113 | walR | 1.93e-121 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| GNCMBPMD_1 | 310375 | 311061 | CovR | 1.05e-117 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| GNCMBPMD_1 | 829218 | 829886 | CiaR | 2.11e-117 | two-component response regulator | 84.31 | 99.55 | AAK74935 |
| GNCMBPMD_1 | 829218 | 829889 | ciaR | 2.08e-115 | two component system response regulator | 82.14 | 99.12 | AIK75708 |
| GNCMBPMD_1 | 73572 | 73946 | SpxA2 | 1.20e-69 | transcriptional regulator | 91.20 | 94.70 | ERL21461 |
| GNCMBPMD_1 | 983799 | 984200 | SpxA1 | 3.93e-66 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| GNCMBPMD_1 | 153776 | 154276 | RopE (M5005_Spy_1611) | 5.14e-75 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| GNCMBPMD_1 | 1593630 | 1595927 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| GNCMBPMD_1 | 574549 | 575745 | AUS90997 (B9H01_RS07385) | 0.0 | site-specific integrase | 97.74 | 100.00 | AUS90997 |
| GNCMBPMD_1 | 1796858 | 1795839 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |