Genome ID：GCA_042266245.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
12	10	8	17.55

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
JCMNHDLE_2	428935	429252	ykkD	ARO:3003064	ykkD	99.05	100.00	AL009126.1
JCMNHDLE_2	428597	428935	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
JCMNHDLE_4	366303	367472	bmr	ARO:3003007	bmr	99.23	100.00	M33768.1
JCMNHDLE_3	343486	344406	mphK	ARO:3004541	mphK	98.69	100.00	CP010314.1
JCMNHDLE_3	330158	331591	lmrB	ARO:3002813	lmrB	99.37	100.00	JYFL01000006.1
JCMNHDLE_3	280440	281033	tmrB	ARO:3003059	tmrB	98.48	100.00	AL009126.3
JCMNHDLE_4	142488	143690	blt	ARO:3003006	blt	98.75	100.00	L32599.1
JCMNHDLE_4	123698	124552	aadK	ARO:3002627	aadK	97.54	100.00	AL009126.1
JCMNHDLE_3	28977	30620	vmlR	ARO:3004476	vmlR	98.54	100.00	NC_000964.3
JCMNHDLE_7	27386	29956	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.88	100.00	AL009126.3

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
JCMNHDLE_1	34611	35987	tet(L)	Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline	99.42	100.00	D12567
JCMNHDLE_3	343486	344406	mph(K)	Spiramycin, Telithromycin	99.13	100.00	NC_000964
JCMNHDLE_4	123698	124550	aadK	Streptomycin	98.12	99.77	M26879

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
JCMNHDLE_1	34611	35984	tet(L)	tetracycline efflux MFS transporter Tet(L)	BLASTX	99.34	100.00	WP_063856081.1
JCMNHDLE_3	343489	344406	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	98.69	100.00	WP_003246254.1
JCMNHDLE_3	28977	30617	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	98.54	100.00	WP_003234144.1
JCMNHDLE_4	123698	124549	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	97.54	100.00	WP_003229862.1
JCMNHDLE_1	37997	38515	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.17	100.00	WP_003242546.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
JCMNHDLE_1	519100	520281	capB	0.0	Capsule	Immune modulation	99.66	100.00	NP_391471
JCMNHDLE_1	938498	945634	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	99.62	100.00	NP_391076
JCMNHDLE_5	62326	62967	hlyIII	0.0	Hemolysin III	Exotoxin	99.53	100.00	NP_390062
JCMNHDLE_1	933857	934642	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.36	100.00	NP_391080
JCMNHDLE_1	937540	938478	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.25	100.00	NP_391077
JCMNHDLE_1	934668	935864	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.17	100.00	NP_391079
JCMNHDLE_5	206771	208534	dep/capD	0.0	Capsule	Immune modulation	99.15	100.00	NP_389723
JCMNHDLE_1	935893	937512	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	99.07	100.00	NP_391078
JCMNHDLE_1	520764	521906	capA	0.0	Capsule	Immune modulation	98.95	100.00	NP_391469
JCMNHDLE_1	520296	520745	capC	0.0	Capsule	Immune modulation	98.67	100.00	NP_391470

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
JCMNHDLE_10	13681	12545	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
JCMNHDLE_12	11216	10347	pdxS	1.11e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
JCMNHDLE_2	738748	739524	CodY	7.49e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
JCMNHDLE_1	681642	681073	ClpP	6.30e-99	part of proteolytic complex	81.05	97.44	BAB94595
JCMNHDLE_2	276391	276783	spxA1	5.89e-70	redox-responsive transcription factor	83.97	100.00	AAF21893
JCMNHDLE_2	276391	276783	spx	3.51e-68	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
JCMNHDLE_9	20595	20837	SpoVG	7.52e-39	RNA-binding protein	81.48	79.41	AAT02994
JCMNHDLE_3	80177	79980	CspA	1.91e-31	cold shock protein	90.91	100.00	CAA62903
JCMNHDLE_5	50363	50169	CspD	2.07e-28	cold shock protein	81.54	98.48	CAC99957