Genome ID:GCA_042266985.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 8 | 17.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMKFGEBK_2 | 503369 | 503707 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| PMKFGEBK_2 | 503052 | 503369 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| PMKFGEBK_3 | 408496 | 410139 | vmlR | ARO:3004476 | vmlR | 98.35 | 100.00 | NC_000964.3 |
| PMKFGEBK_4 | 296421 | 297275 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| PMKFGEBK_4 | 277667 | 278869 | blt | ARO:3003006 | blt | 99.00 | 100.00 | L32599.1 |
| PMKFGEBK_6 | 251851 | 254421 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| PMKFGEBK_3 | 155132 | 155725 | tmrB | ARO:3003059 | tmrB | 97.46 | 100.00 | AL009126.3 |
| PMKFGEBK_3 | 104612 | 106051 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| PMKFGEBK_3 | 91799 | 92719 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
| PMKFGEBK_4 | 56405 | 57574 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMKFGEBK_4 | 296421 | 297275 | aadK | Streptomycin | 98.71 | 100.00 | M26879 |
| PMKFGEBK_3 | 91799 | 92719 | mph(K) | Spiramycin, Telithromycin | 97.50 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMKFGEBK_4 | 296424 | 297275 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| PMKFGEBK_3 | 408499 | 410139 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.35 | 100.00 | WP_003234144.1 |
| PMKFGEBK_3 | 91799 | 92716 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| PMKFGEBK_1 | 38171 | 38689 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.64 | 100.00 | WP_003242546.1 |
| PMKFGEBK_7 | 64493 | 67090 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.65 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PMKFGEBK_1 | 527829 | 529010 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| PMKFGEBK_1 | 950886 | 951671 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.75 | 100.00 | NP_391080 |
| PMKFGEBK_7 | 162692 | 163333 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| PMKFGEBK_1 | 951697 | 952893 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| PMKFGEBK_7 | 10249 | 12012 | dep/capD | 0.0 | Capsule | Immune modulation | 99.32 | 100.00 | NP_389723 |
| PMKFGEBK_1 | 529025 | 529474 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| PMKFGEBK_1 | 955527 | 962663 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.74 | 100.00 | NP_391076 |
| PMKFGEBK_1 | 529493 | 530635 | capA | 0.0 | Capsule | Immune modulation | 98.69 | 100.00 | NP_391469 |
| PMKFGEBK_1 | 954569 | 955507 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391077 |
| PMKFGEBK_1 | 952922 | 954541 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMKFGEBK_11 | 13635 | 12499 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| PMKFGEBK_12 | 11264 | 10395 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| PMKFGEBK_2 | 191953 | 191177 | CodY | 7.96e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PMKFGEBK_1 | 688265 | 687696 | ClpP | 6.40e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| PMKFGEBK_2 | 703534 | 703142 | spxA1 | 6.25e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| PMKFGEBK_2 | 703534 | 703142 | spx | 3.73e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| PMKFGEBK_10 | 34684 | 34442 | SpoVG | 7.50e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| PMKFGEBK_3 | 360082 | 360279 | CspA | 1.90e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| PMKFGEBK_7 | 174565 | 174759 | CspD | 5.78e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| PMKFGEBK_7 | 174565 | 174762 | CspB | 1.20e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |