Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 4 | 4.90 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNENKMEB_1 | 528915 | 529964 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LNENKMEB_1 | 528915 | 529950 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.80 | 98.67 | KR610408 |
| LNENKMEB_1 | 2641042 | 2642418 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.78 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNENKMEB_1 | 528915 | 529961 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| LNENKMEB_1 | 2641048 | 2642418 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.65 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LNENKMEB_1 | 3579651 | 3580832 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| LNENKMEB_1 | 3579187 | 3579636 | capC | 1.52e-113 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LNENKMEB_1 | 102407 | 103543 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| LNENKMEB_1 | 4087560 | 4088429 | pdxS | 6.61e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.48 | 98.31 | ACE61268 |
| LNENKMEB_1 | 1661196 | 1661972 | CodY | 4.85e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| LNENKMEB_1 | 3173004 | 3172132 | lipA (SAUSA300_0829) | 1.32e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |