Genome ID:GCA_043950685.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 4 | 4.90 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCHCBIHG_1 | 3380185 | 3381234 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FCHCBIHG_1 | 3380185 | 3381220 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.09 | 98.67 | KR610408 |
| FCHCBIHG_1 | 1395691 | 1397067 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.07 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCHCBIHG_1 | 3380185 | 3381231 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
| FCHCBIHG_1 | 1395697 | 1397067 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FCHCBIHG_1 | 2327646 | 2328827 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| FCHCBIHG_1 | 2327182 | 2327631 | capC | 1.51e-113 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FCHCBIHG_1 | 2957776 | 2958912 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| FCHCBIHG_1 | 2842879 | 2843748 | pdxS | 3.40e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| FCHCBIHG_1 | 413984 | 414760 | CodY | 4.81e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| FCHCBIHG_1 | 1918051 | 1917179 | lipA (SAUSA300_0829) | 1.31e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |