Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJMFCGGI_13 | 41178 | 42227 | clbA | ARO:3002814 | clbA | 97.99 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JJMFCGGI_13 | 41178 | 42213 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.42 | 98.67 | KR610408 |
| JJMFCGGI_1 | 341271 | 342647 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.36 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJMFCGGI_13 | 41178 | 42221 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 98.28 | 99.71 | WP_012116915.1 |
| JJMFCGGI_1 | 341271 | 342641 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JJMFCGGI_4 | 156378 | 157559 | capB | 0.0 | Capsule | Immune modulation | 82.04 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJMFCGGI_23 | 28115 | 26979 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| JJMFCGGI_40 | 4351 | 5220 | pdxS | 1.35e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| JJMFCGGI_3 | 212850 | 212074 | CodY | 3.51e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JJMFCGGI_21 | 37935 | 38327 | spxA1 | 1.43e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| JJMFCGGI_13 | 10419 | 10616 | CspA | 5.56e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| JJMFCGGI_7 | 35615 | 35809 | CspD | 4.04e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| JJMFCGGI_7 | 35615 | 35812 | CspB | 8.39e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| JJMFCGGI_13 | 10419 | 10613 | CspR | 7.28e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| JJMFCGGI_2 | 97428 | 96556 | lipA (SAUSA300_0829) | 6.91e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |