Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 6 | 7.00 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KDOOIGDA_3 | 52544 | 53593 | clbA | ARO:3002814 | clbA | 97.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KDOOIGDA_3 | 52558 | 53593 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.22 | 98.67 | KR610408 |
| KDOOIGDA_1 | 381358 | 382734 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.29 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KDOOIGDA_3 | 52550 | 53593 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.99 | 99.71 | WP_012116915.1 |
| KDOOIGDA_1 | 381358 | 382728 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.65 | 99.78 | WP_003242953.1 |
| KDOOIGDA_1 | 1119131 | 1121725 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.46 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KDOOIGDA_2 | 573602 | 574783 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
| KDOOIGDA_2 | 573138 | 573587 | capC | 1.88e-112 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KDOOIGDA_6 | 28260 | 27124 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| KDOOIGDA_8 | 12499 | 11630 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KDOOIGDA_1 | 1459484 | 1458708 | CodY | 2.64e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KDOOIGDA_1 | 1963000 | 1962608 | spxA1 | 4.82e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KDOOIGDA_3 | 81982 | 81785 | CspA | 2.61e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KDOOIGDA_3 | 81982 | 81788 | CspR | 3.42e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KDOOIGDA_2 | 182648 | 181776 | lipA (SAUSA300_0829) | 3.50e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |