Genome ID:GCA_045836075.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 10 | 4 | 13.42 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDGLLJGE_1 | 2208298 | 2209467 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| HDGLLJGE_1 | 1316388 | 1316705 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| HDGLLJGE_1 | 1316050 | 1316388 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| HDGLLJGE_1 | 837399 | 839969 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| HDGLLJGE_1 | 561675 | 563318 | vmlR | ARO:3004476 | vmlR | 97.99 | 100.00 | NC_000964.3 |
| HDGLLJGE_1 | 274159 | 275592 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.00 | JYFL01000006.1 |
| HDGLLJGE_1 | 264173 | 265087 | mphK | ARO:3004541 | mphK | 97.39 | 99.35 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HDGLLJGE_1 | 264173 | 265087 | mph(K) | Spiramycin, Telithromycin | 97.18 | 99.35 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDGLLJGE_1 | 561678 | 563318 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 97.99 | 100.00 | WP_003234144.1 |
| HDGLLJGE_1 | 264173 | 265084 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.39 | 100.00 | WP_003246254.1 |
| HDGLLJGE_1 | 3807305 | 3807823 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HDGLLJGE_1 | 3344024 | 3345205 | capB | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | NP_391471 |
| HDGLLJGE_1 | 2937864 | 2938802 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.47 | 100.00 | NP_391077 |
| HDGLLJGE_1 | 2941689 | 2942474 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| HDGLLJGE_1 | 1859739 | 1861502 | dep/capD | 0.0 | Capsule | Immune modulation | 99.26 | 100.00 | NP_389723 |
| HDGLLJGE_1 | 3342399 | 3343541 | capA | 0.0 | Capsule | Immune modulation | 99.21 | 100.00 | NP_391469 |
| HDGLLJGE_1 | 3343560 | 3344009 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| HDGLLJGE_1 | 2930708 | 2937844 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.99 | 100.00 | NP_391076 |
| HDGLLJGE_1 | 2940467 | 2941663 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.83 | 100.00 | NP_391079 |
| HDGLLJGE_1 | 2005181 | 2005822 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.82 | 100.00 | NP_390062 |
| HDGLLJGE_1 | 2938830 | 2940449 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.78 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDGLLJGE_1 | 132727 | 133863 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| HDGLLJGE_1 | 18662 | 19531 | pdxS | 2.85e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| HDGLLJGE_1 | 1635188 | 1635964 | CodY | 3.11e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| HDGLLJGE_1 | 3199893 | 3200462 | ClpP | 2.31e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |