Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 6 | 7.00 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIEKHHNG_10 | 52662 | 53711 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IIEKHHNG_10 | 52676 | 53711 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.61 | 98.67 | KR610408 |
| IIEKHHNG_9 | 373529 | 374905 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.87 | 99.93 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIEKHHNG_10 | 52665 | 53711 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| IIEKHHNG_9 | 373529 | 374899 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.31 | 99.78 | WP_003242953.1 |
| IIEKHHNG_9 | 372798 | 373316 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IIEKHHNG_8 | 495984 | 497165 | capB | 0.0 | Capsule | Immune modulation | 82.21 | 99.66 | NP_391471 |
| IIEKHHNG_8 | 497180 | 497629 | capC | 3.76e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IIEKHHNG_12 | 31897 | 33033 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| IIEKHHNG_14 | 12534 | 11665 | pdxS | 1.38e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| IIEKHHNG_1 | 753706 | 754482 | CodY | 1.29e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| IIEKHHNG_1 | 252010 | 252402 | spxA1 | 2.36e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| IIEKHHNG_10 | 73530 | 73333 | CspA | 2.40e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| IIEKHHNG_10 | 73530 | 73336 | CspR | 3.15e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| IIEKHHNG_8 | 874124 | 874996 | lipA (SAUSA300_0829) | 3.26e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |