Genome ID：GCA_046543845.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	9	18.71

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
HAAFFPIK_3	366652	367821	bmr	ARO:3003007	bmr	99.49	100.00	M33768.1
HAAFFPIK_6	280470	281390	mphK	ARO:3004541	mphK	98.04	100.00	CP010314.1
HAAFFPIK_6	267140	268579	lmrB	ARO:3002813	lmrB	99.16	100.42	JYFL01000006.1
HAAFFPIK_2	225204	225542	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
HAAFFPIK_2	224887	225204	ykkD	ARO:3003064	ykkD	99.05	100.00	AL009126.1
HAAFFPIK_6	217460	218053	tmrB	ARO:3003059	tmrB	97.46	100.00	AL009126.3
HAAFFPIK_9	64306	65949	vmlR	ARO:3004476	vmlR	98.17	100.00	NC_000964.3
HAAFFPIK_4	51392	52246	aadK	ARO:3002627	aadK	98.59	100.00	AL009126.1
HAAFFPIK_4	32621	33823	blt	ARO:3003006	blt	99.00	100.00	L32599.1
HAAFFPIK_8	27375	29945	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.53	100.00	AL009126.3

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
HAAFFPIK_4	51392	52246	aadK	Streptomycin	98.83	100.00	M26879
HAAFFPIK_6	280470	281390	mph(K)	Spiramycin, Telithromycin	97.94	100.00	NC_000964
HAAFFPIK_1	674655	676031	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	96.37	100.00	D12567

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
HAAFFPIK_4	51395	52246	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	98.59	100.00	WP_003229862.1
HAAFFPIK_9	64309	65949	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	98.17	100.00	WP_003234144.1
HAAFFPIK_6	280473	281390	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	98.04	100.00	WP_003246254.1
HAAFFPIK_1	674658	676031	tet(L)	tetracycline efflux MFS transporter Tet(L)	BLASTX	97.16	100.00	WP_063856081.1
HAAFFPIK_1	672141	672659	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.75	100.00	WP_003242546.1
HAAFFPIK_3	60837	63434	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.60	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
HAAFFPIK_3	163859	164500	hlyIII	0.0	Hemolysin III	Exotoxin	99.84	100.00	NP_390062
HAAFFPIK_1	192550	193731	capB	0.0	Capsule	Immune modulation	99.66	100.00	NP_391471
HAAFFPIK_7	101894	109030	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	99.61	100.00	NP_391076
HAAFFPIK_1	192086	192535	capC	0.0	Capsule	Immune modulation	99.56	100.00	NP_391470
HAAFFPIK_3	8999	10762	dep/capD	0.0	Capsule	Immune modulation	99.55	100.00	NP_389723
HAAFFPIK_7	109050	109988	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.25	100.00	NP_391077
HAAFFPIK_7	112886	113671	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.24	100.00	NP_391080
HAAFFPIK_1	190925	192067	capA	0.0	Capsule	Immune modulation	99.12	100.00	NP_391469
HAAFFPIK_7	110016	111635	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	99.01	100.00	NP_391078
HAAFFPIK_7	111664	112860	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.00	100.00	NP_391079

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
HAAFFPIK_10	28147	27011	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
HAAFFPIK_12	11295	10426	pdxS	1.12e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
HAAFFPIK_5	294886	294110	CodY	3.14e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
HAAFFPIK_1	33987	34556	ClpP	4.29e-99	part of proteolytic complex	81.05	97.44	BAB94595
HAAFFPIK_2	373680	373288	spxA1	4.14e-70	redox-responsive transcription factor	83.97	100.00	AAF21893
HAAFFPIK_2	373680	373288	spx	2.47e-68	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
HAAFFPIK_11	20607	20849	SpoVG	7.52e-39	RNA-binding protein	81.48	79.41	AAT02994
HAAFFPIK_9	5634	5831	CspA	4.10e-32	cold shock protein	90.91	100.00	CAA62903
HAAFFPIK_3	176460	176654	CspD	3.24e-28	cold shock protein	81.54	98.48	CAC99957
HAAFFPIK_2	616899	617093	CspB	5.96e-27	cold shock protein	83.08	98.48	CAD00094