Genome ID：GCA_046573225.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
15	10	9	20.15

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
PHKPHGCG_7	66758	67096	ykkC	ARO:3003063	ykkC	99.11	100.00	AL009126.1
PHKPHGCG_7	66441	66758	ykkD	ARO:3003064	ykkD	98.10	100.00	AL009126.1
PHKPHGCG_26	36229	37431	blt	ARO:3003006	blt	100.00	100.00	L32599.1
PHKPHGCG_22	18424	19857	lmrB	ARO:3002813	lmrB	98.95	100.00	JYFL01000006.1
PHKPHGCG_26	17813	18667	aadK	ARO:3002627	aadK	97.54	100.00	AL009126.1
PHKPHGCG_10	9453	12023	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.77	100.00	AL009126.3
PHKPHGCG_13	9122	10291	bmr	ARO:3003007	bmr	99.49	100.00	M33768.1
PHKPHGCG_47	2662	4041	tet(K)	ARO:3000178	tet(K)	100.00	100.00	S67449.1
PHKPHGCG_52	339	986	Staphylococcus intermedius chloramphenicol acetyltransferase	ARO:3004457	Sint_ACT_CHL	98.14	100.00	M64281.1
PHKPHGCG_67	166	903	ErmB	ARO:3000375	ErmB	98.78	98.79	AF242872.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
PHKPHGCG_52	339	986	cat(pC221)	Chloramphenicol	100.00	100.00	X02529
PHKPHGCG_67	166	903	erm(B)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	U18931
PHKPHGCG_47	2662	4041	tet(K)	Doxycycline, Tetracycline	100.00	100.00	U38656
PHKPHGCG_17	34712	36088	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	98.77	100.00	D12567
PHKPHGCG_26	17813	18665	aadK	Streptomycin	98.48	99.77	M26879
PHKPHGCG_15	97260	98179	mph(K)	Spiramycin, Telithromycin	97.61	99.89	NC_000964

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
PHKPHGCG_52	339	983	catA	type A-7 chloramphenicol O-acetyltransferase	EXACTX	100.00	100.00	WP_002489529.1
PHKPHGCG_67	169	903	erm(B)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	EXACTX	100.00	100.00	WP_002292226.1
PHKPHGCG_47	2665	4041	tet(K)	tetracycline efflux MFS transporter Tet(K)	EXACTX	100.00	100.00	WP_000492283.1
PHKPHGCG_245	2	424	sat4	streptothricin N-acetyltransferase Sat4	PARTIAL_CONTIG_ENDX	100.00	78.33	WP_000627290.1
PHKPHGCG_17	34712	36085	tet(L)	tetracycline efflux MFS transporter Tet(L)	BLASTX	98.69	100.00	WP_063856081.1
PHKPHGCG_18	49254	50894	vmlR	ABC-F type ribosomal protection protein VmlR	INTERNAL_STOP	97.62	100.00	WP_003234144.1
PHKPHGCG_26	17813	18664	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	97.54	100.00	WP_003229862.1
PHKPHGCG_17	38063	38581	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.17	100.00	WP_003242546.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PHKPHGCG_2	143040	143978	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.68	100.00	NP_391077
PHKPHGCG_3	310695	311876	capB	0.0	Capsule	Immune modulation	99.66	100.00	NP_391471
PHKPHGCG_3	312359	313501	capA	0.0	Capsule	Immune modulation	99.56	100.00	NP_391469
PHKPHGCG_3	311891	312340	capC	0.0	Capsule	Immune modulation	99.56	100.00	NP_391470
PHKPHGCG_2	146865	147650	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.36	100.00	NP_391080
PHKPHGCG_12	76024	77787	dep/capD	0.0	Capsule	Immune modulation	99.15	100.00	NP_389723
PHKPHGCG_2	135884	143020	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	98.78	100.00	NP_391076
PHKPHGCG_2	145643	146839	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	98.58	100.00	NP_391079
PHKPHGCG_8	32583	33224	hlyIII	0.0	Hemolysin III	Exotoxin	97.82	100.00	NP_390062
PHKPHGCG_2	144006	145625	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	97.78	100.00	NP_391078

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PHKPHGCG_21	28134	26998	tufA	0.0	elongation factor Tu	85.75	95.69	AHM69299
PHKPHGCG_37	11392	10523	pdxS	1.97e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.45	98.31	ACE61268
PHKPHGCG_1	150526	151302	CodY	3.02e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
PHKPHGCG_5	150573	150004	ClpP	1.43e-99	part of proteolytic complex	81.05	97.44	BAB94595
PHKPHGCG_16	38967	38575	spxA1	5.78e-71	redox-responsive transcription factor	83.97	100.00	AAF21893
PHKPHGCG_16	38967	38575	spx	3.45e-69	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
PHKPHGCG_169	293	628	mazF	7.01e-66	endoribonuclease	86.61	93.33	BAF68246
PHKPHGCG_25	20633	20875	SpoVG	7.52e-39	RNA-binding protein	81.48	79.41	AAT02994
PHKPHGCG_447	253	59	CspA	5.57e-34	cold shock protein	80.00	98.48	CAA62903
PHKPHGCG_8	45076	45270	CspD	3.85e-28	cold shock protein	80.00	98.48	CAC99957
PHKPHGCG_8	45076	45273	CspB	7.99e-28	cold shock protein	80.30	100.00	CAD00094