Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MCGBOIFP_7 | 90709 | 91758 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MCGBOIFP_7 | 90709 | 91744 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.03 | 98.67 | KR610408 |
| MCGBOIFP_1 | 1693636 | 1695013 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.01 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MCGBOIFP_7 | 90709 | 91752 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| MCGBOIFP_1 | 1693760 | 1695013 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.08 | 91.27 | WP_003242953.1 |
| MCGBOIFP_1 | 1695226 | 1695744 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.92 | 100.00 | WP_003242546.1 |
| MCGBOIFP_1 | 963794 | 966388 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.11 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MCGBOIFP_2 | 502725 | 503906 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| MCGBOIFP_2 | 503921 | 504370 | capC | 1.96e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCGBOIFP_8 | 31773 | 32909 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| MCGBOIFP_11 | 12507 | 11638 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| MCGBOIFP_1 | 758221 | 758997 | CodY | 2.40e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| MCGBOIFP_1 | 254180 | 254572 | spxA1 | 4.39e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| MCGBOIFP_7 | 67540 | 67737 | CspA | 8.61e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| MCGBOIFP_7 | 67540 | 67734 | CspR | 1.13e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| MCGBOIFP_3 | 151032 | 151904 | lipA (SAUSA300_0829) | 9.03e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |