Genome ID：GCA_046592455.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
10	10	9	16.76

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
PMMEFHNH_6	65715	66053	ykkC	ARO:3003063	ykkC	99.11	100.00	AL009126.1
PMMEFHNH_6	65398	65715	ykkD	ARO:3003064	ykkD	98.10	100.00	AL009126.1
PMMEFHNH_25	47841	50411	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.77	100.00	AL009126.3
PMMEFHNH_4	39512	40951	lmrB	ARO:3002813	lmrB	98.74	100.42	JYFL01000006.1
PMMEFHNH_10	8998	10167	bmr	ARO:3003007	bmr	98.97	100.00	M33768.1
PMMEFHNH_63	219	1073	aadK	ARO:3002627	aadK	97.89	100.00	AL009126.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
PMMEFHNH_16	79330	80706	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	99.35	100.00	X08034
PMMEFHNH_63	221	1073	aadK	Streptomycin	98.59	99.77	M26879
PMMEFHNH_4	66319	67238	mph(K)	Spiramycin, Telithromycin	97.61	99.89	NC_000964

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
PMMEFHNH_16	79333	80706	tet(L)	tetracycline efflux MFS transporter Tet(L)	BLASTX	99.13	100.00	WP_003242953.1
PMMEFHNH_63	222	1073	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	97.89	100.00	WP_003229862.1
PMMEFHNH_22	44606	46246	vmlR	ABC-F type ribosomal protection protein VmlR	INTERNAL_STOP	97.62	100.00	WP_003234144.1
PMMEFHNH_16	76831	77349	satA	streptothricin N-acetyltransferase SatA	BLASTX	92.49	100.00	WP_003242546.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PMMEFHNH_33	3209	4390	capB	0.0	Capsule	Immune modulation	99.66	100.00	NP_391471
PMMEFHNH_33	1584	2726	capA	0.0	Capsule	Immune modulation	99.65	100.00	NP_391469
PMMEFHNH_33	2745	3194	capC	0.0	Capsule	Immune modulation	99.56	100.00	NP_391470
PMMEFHNH_5	104102	104887	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.36	100.00	NP_391080
PMMEFHNH_41	21347	23110	dep/capD	0.0	Capsule	Immune modulation	99.26	100.00	NP_389723
PMMEFHNH_5	93110	100246	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	98.95	100.00	NP_391076
PMMEFHNH_5	102880	104076	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	98.75	100.00	NP_391079
PMMEFHNH_5	100266	101204	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	98.62	100.00	NP_391077
PMMEFHNH_5	101232	102851	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	97.90	100.00	NP_391078
PMMEFHNH_11	6678	7319	hlyIII	0.0	Hemolysin III	Exotoxin	97.82	100.00	NP_390062

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PMMEFHNH_21	27970	26834	tufA	0.0	elongation factor Tu	85.75	95.69	AHM69299
PMMEFHNH_55	4229	5098	pdxS	1.94e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.45	98.31	ACE61268
PMMEFHNH_1	196014	196790	CodY	2.52e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
PMMEFHNH_2	161038	161607	ClpP	1.87e-99	part of proteolytic complex	81.05	97.44	BAB94595
PMMEFHNH_23	38631	38239	spxA1	3.72e-71	redox-responsive transcription factor	83.97	100.00	AAF21893
PMMEFHNH_23	38631	38239	spx	2.22e-69	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
PMMEFHNH_26	20512	20754	SpoVG	7.49e-39	RNA-binding protein	81.48	79.41	AAT02994
PMMEFHNH_59	10783	10980	CspA	4.81e-33	cold shock protein	90.91	100.00	CAA62903
PMMEFHNH_11	19280	19474	CspD	6.46e-29	cold shock protein	81.54	98.48	CAC99957
PMMEFHNH_3	190892	191086	CspB	1.87e-27	cold shock protein	83.08	98.48	CAD00094