Genome ID：GCA_046599185.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
12	11	9	18.60

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
NEEPCCMD_2	426691	428334	vmlR	ARO:3004476	vmlR	98.72	100.00	NC_000964.3
NEEPCCMD_3	192390	193592	blt	ARO:3003006	blt	99.25	100.00	L32599.1
NEEPCCMD_3	174019	174873	aadK	ARO:3002627	aadK	99.30	100.00	AL009126.1
NEEPCCMD_2	150922	151515	tmrB	ARO:3003059	tmrB	97.46	100.00	AL009126.3
NEEPCCMD_2	100428	101861	lmrB	ARO:3002813	lmrB	99.58	100.00	JYFL01000006.1
NEEPCCMD_2	87615	88535	mphK	ARO:3004541	mphK	99.02	100.00	CP010314.1
NEEPCCMD_8	40246	40584	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
NEEPCCMD_8	39929	40246	ykkD	ARO:3003064	ykkD	99.05	100.00	AL009126.1
NEEPCCMD_56	5937	7106	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
NEEPCCMD_32	966	3536	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.53	100.00	AL009126.3

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
NEEPCCMD_3	174019	174871	aadK	Streptomycin	98.94	99.77	M26879
NEEPCCMD_2	87615	88535	mph(K)	Spiramycin, Telithromycin	98.59	100.00	NC_000964

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
NEEPCCMD_3	174019	174870	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	99.30	100.00	WP_003229862.1
NEEPCCMD_2	87615	88532	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	99.02	100.00	WP_003246254.1
NEEPCCMD_2	426694	428334	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	98.72	100.00	WP_003234144.1
NEEPCCMD_1	17342	17860	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.75	100.00	WP_003242546.1
NEEPCCMD_23	10816	13413	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.71	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
NEEPCCMD_1	493043	494224	capB	0.0	Capsule	Immune modulation	99.75	100.00	NP_391471
NEEPCCMD_62	4420	6183	dep/capD	0.0	Capsule	Immune modulation	99.72	100.00	NP_389723
NEEPCCMD_1	494707	495849	capA	0.0	Capsule	Immune modulation	99.39	100.00	NP_391469
NEEPCCMD_31	1531	2172	hlyIII	0.0	Hemolysin III	Exotoxin	99.38	100.00	NP_390062
NEEPCCMD_4	164953	165891	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.36	100.00	NP_391077
NEEPCCMD_1	494239	494688	capC	0.0	Capsule	Immune modulation	99.33	100.00	NP_391470
NEEPCCMD_4	161270	162055	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.24	100.00	NP_391080
NEEPCCMD_4	165911	173047	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	99.23	100.00	NP_391076
NEEPCCMD_4	162081	163277	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.17	100.00	NP_391079
NEEPCCMD_4	163306	164925	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	98.39	100.00	NP_391078
NEEPCCMD_127	229	486	isdG	1.71e-122	NEAT-type hemophore-mediated heme uptake system	Nutritional/Metabolic factor	97.29	79.63	WP_000587815

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
NEEPCCMD_21	31799	32935	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
NEEPCCMD_47	11245	10376	pdxS	1.11e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
NEEPCCMD_19	37755	36979	CodY	5.22e-126	nutrient-responsive regulator	81.08	100.00	ACJ80679
NEEPCCMD_13	30545	29976	ClpP	4.57e-100	part of proteolytic complex	81.05	97.44	BAB94595
NEEPCCMD_5	93417	93025	spxA1	1.71e-70	redox-responsive transcription factor	83.97	100.00	AAF21893
NEEPCCMD_5	93417	93025	spx	1.02e-68	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
NEEPCCMD_22	20605	20847	SpoVG	7.51e-39	RNA-binding protein	81.48	79.41	AAT02994
NEEPCCMD_2	378060	378257	CspA	1.98e-31	cold shock protein	90.91	100.00	CAA62903
NEEPCCMD_31	14136	14330	CspD	2.02e-29	cold shock protein	81.54	98.48	CAC99957
NEEPCCMD_9	32471	32277	CspB	8.65e-28	cold shock protein	83.08	98.48	CAD00094