Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CDFFHLFE_48 | 8729 | 10648 | tet(W) | ARO:3000194 | tet(W) | 92.48 | 100.00 | AJ222769.3 |
| CDFFHLFE_69 | 2793 | 3539 | ErmB | ARO:3000375 | ErmB | 97.57 | 100.00 | AF242872.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CDFFHLFE_48 | 7174 | 8550 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.49 | 100.00 | AY081910 |
| CDFFHLFE_69 | 2805 | 3539 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 97.61 | AF080450 |
| CDFFHLFE_48 | 8744 | 10648 | tet(O/W/O)-2 | Doxycycline, Tetracycline, Minocycline | 89.21 | 99.01 | AY196920 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CDFFHLFE_69 | 2799 | 3539 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.79 | 99.60 | WP_063844850.1 |
| CDFFHLFE_48 | 7177 | 8550 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
| CDFFHLFE_48 | 8735 | 10648 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 94.51 | 99.84 | WP_003672618.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CDFFHLFE_4 | 51189 | 51383 | CspA | 1.11e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |