Genome ID:GCA_047314825.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 8 | 18.25 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNFCPGEP_1 | 288969 | 289823 | aadK | ARO:3002627 | aadK | 88.38 | 100.00 | AL009126.1 |
| DNFCPGEP_11 | 113810 | 114127 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| DNFCPGEP_11 | 113472 | 113810 | ykkC | ARO:3003063 | ykkC | 97.32 | 100.00 | AL009126.1 |
| DNFCPGEP_1 | 80764 | 81933 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| DNFCPGEP_7 | 48044 | 49483 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.42 | JYFL01000006.1 |
| DNFCPGEP_13 | 29431 | 31077 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.18 | NC_000964.3 |
| DNFCPGEP_43 | 12447 | 13649 | blt | ARO:3003006 | blt | 99.50 | 100.00 | L32599.1 |
| DNFCPGEP_35 | 7859 | 8713 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| DNFCPGEP_7 | 1048 | 1641 | tmrB | ARO:3003059 | tmrB | 96.95 | 100.00 | AL009126.3 |
| DNFCPGEP_47 | 128 | 2698 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.65 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DNFCPGEP_10 | 79942 | 81318 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.35 | 100.00 | X08034 |
| DNFCPGEP_35 | 7859 | 8713 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| DNFCPGEP_7 | 74837 | 75756 | mph(K) | Spiramycin, Telithromycin | 97.83 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNFCPGEP_10 | 79945 | 81318 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_003242953.1 |
| DNFCPGEP_35 | 7862 | 8713 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| DNFCPGEP_13 | 29431 | 31074 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| DNFCPGEP_10 | 77443 | 77961 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| DNFCPGEP_1 | 288972 | 289823 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 88.38 | 100.00 | WP_003229862.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DNFCPGEP_12 | 99770 | 100708 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| DNFCPGEP_12 | 103595 | 104380 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.62 | 100.00 | NP_391080 |
| DNFCPGEP_38 | 2871 | 3320 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| DNFCPGEP_24 | 33652 | 34293 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| DNFCPGEP_38 | 3335 | 4516 | capB | 0.0 | Capsule | Immune modulation | 99.41 | 100.00 | NP_391471 |
| DNFCPGEP_38 | 1710 | 2852 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| DNFCPGEP_5 | 59134 | 60897 | dep/capD | 0.0 | Capsule | Immune modulation | 99.15 | 100.00 | NP_389723 |
| DNFCPGEP_12 | 92614 | 99750 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.95 | 100.00 | NP_391076 |
| DNFCPGEP_12 | 102373 | 103569 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| DNFCPGEP_12 | 100736 | 102355 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.84 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DNFCPGEP_26 | 31767 | 32903 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| DNFCPGEP_48 | 4418 | 5287 | pdxS | 1.13e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| DNFCPGEP_3 | 196813 | 196037 | CodY | 1.75e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DNFCPGEP_4 | 153612 | 153043 | ClpP | 1.24e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| DNFCPGEP_20 | 52973 | 53365 | spxA1 | 5.22e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| DNFCPGEP_20 | 52973 | 53365 | spx | 3.11e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| DNFCPGEP_29 | 20633 | 20875 | SpoVG | 7.52e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| DNFCPGEP_13 | 83352 | 83155 | CspA | 4.53e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| DNFCPGEP_24 | 22419 | 22225 | CspD | 1.72e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| DNFCPGEP_24 | 22419 | 22222 | CspB | 3.56e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |