Genome ID：GCA_047460155.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
2	19	33	38.13

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
No hit found

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
ELGNPCDN_1	59996	61213	mef(A)	Erythromycin, Azithromycin	100.00	100.00	U83667
ELGNPCDN_1	61333	62796	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	AF274302

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
ELGNPCDN_1	59996	61210	mef(A)	macrolide efflux MFS transporter Mef(A)	EXACTX	100.00	100.00	WP_000417519.1
ELGNPCDN_1	61333	62793	msr(D)	ABC-F type ribosomal protection protein Msr(D)	EXACTX	100.00	100.00	WP_000420313.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
ELGNPCDN_5	70513	71228	STER_RS07085	0.0	Capsule	Immune modulation	96.51	99.86	WP_011681442
ELGNPCDN_5	67323	68576	STER_RS07100	0.0	Capsule	Immune modulation	95.14	99.44	WP_011681445
ELGNPCDN_5	66353	67204	rfbD	0.0	Capsule	Immune modulation	94.95	100.00	WP_014621820
ELGNPCDN_5	69543	70511	STER_RS07090	0.0	Capsule	Immune modulation	94.84	100.00	WP_011681443
ELGNPCDN_12	55059	56426	STU_RS14630	0.0	Capsule	Immune modulation	94.15	100.00	WP_011226045
ELGNPCDN_12	55059	56424	STER_RS05300	0.0	Capsule	Immune modulation	94.14	99.85	WP_011681173
ELGNPCDN_12	51359	52819	STER_RS05320	0.0	Capsule	Immune modulation	93.70	100.00	WP_011681177
ELGNPCDN_12	51359	52819	STU_RS14650	0.0	Capsule	Immune modulation	93.63	100.21	WP_011226049
ELGNPCDN_12	54262	55002	STER_RS05305	0.0	Capsule	Immune modulation	93.52	100.00	WP_011681174
ELGNPCDN_5	71574	72344	STER_RS07075	0.0	Capsule	Immune modulation	93.26	99.23	WP_011681440
ELGNPCDN_12	51359	52819	STR_RS05265	0.0	Capsule	Immune modulation	92.88	100.21	WP_041827043
ELGNPCDN_12	54262	55002	STU_RS14635	0.0	Capsule	Immune modulation	92.85	100.00	WP_011226046
ELGNPCDN_12	54262	54997	STR_RS05250	0.0	Capsule	Immune modulation	92.25	98.13	WP_011227246
ELGNPCDN_3	122682	123275	STR_RS05880	0.0	Capsule	Immune modulation	91.75	100.00	WP_011226149
ELGNPCDN_12	52820	53551	STU_RS14645	0.0	Capsule	Immune modulation	91.67	100.00	WP_011226048
ELGNPCDN_3	122682	123275	STER_RS06030	0.0	Capsule	Immune modulation	91.58	100.00	WP_011226149
ELGNPCDN_3	122682	123275	STU_RS15260	0.0	Capsule	Immune modulation	91.58	100.00	WP_011226149
ELGNPCDN_3	123275	124144	rfbA	0.0	Capsule	Immune modulation	91.49	100.00	WP_011681286
ELGNPCDN_12	52820	53551	STER_RS05315	0.0	Capsule	Immune modulation	91.26	100.00	WP_011681176
ELGNPCDN_12	52820	53551	STR_RS05260	0.0	Capsule	Immune modulation	90.71	100.00	WP_011227248
ELGNPCDN_1	126249	127907	fbp54	0.0	FBPs	Adherence	90.66	99.94	WP_011227179
ELGNPCDN_22	19960	20799	cbpD	0.0	Autolysin	Exoenzyme	89.92	99.76	WP_011226733
ELGNPCDN_2	182664	183967	eno	0.0	Streptococcal enolase	Exoenzyme	88.24	99.54	WP_000022832
ELGNPCDN_12	53560	54252	STR_RS05255	0.0	Capsule	Immune modulation	87.90	99.86	WP_011227247
ELGNPCDN_12	53560	54252	STU_RS14640	0.0	Capsule	Immune modulation	87.90	99.86	WP_011226047
ELGNPCDN_29	5918	6928	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	87.36	99.80	WP_002986042
ELGNPCDN_12	53560	54252	STER_RS05310	0.0	Capsule	Immune modulation	87.32	99.86	WP_011681175
ELGNPCDN_24	3852	4613	srtA	0.0	Sortase A	Exoenzyme	83.90	99.74	-
ELGNPCDN_3	121433	122479	rfbB	0.0	Capsule	Immune modulation	81.98	99.90	WP_009659423
ELGNPCDN_8	1949	3232	tig/ropA	0.0	Trigger factor	Stress survival	80.61	99.61	WP_000107753

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
ELGNPCDN_24	1163	189	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	96.31	99.09	AAK75326
ELGNPCDN_24	12748	13821	MntE	0.0	manganese homeostasis	95.53	99.72	ABF32167
ELGNPCDN_9	32064	29758	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.41	99.22	AAK74619
ELGNPCDN_11	15542	14061	SPD_0310	0.0	UPF0371 protein SPD_0310	93.52	100.00	ABJ54480
ELGNPCDN_24	32288	34534	metE	0.0	methionine biosynthesis enzymes	93.19	100.00	AAK74738
ELGNPCDN_2	92870	93838	spr0084	0.0	pathogenitcity related	92.88	98.48	AAK98888
ELGNPCDN_22	4365	5336	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.67	100.00	ABF36968
ELGNPCDN_3	149525	147795	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	89.95	100.00	AAK34199
ELGNPCDN_5	52490	54478	uvrB	0.0	excinuclease ABC, B subunit	89.59	100.00	AE014259_2
ELGNPCDN_5	24152	25303	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.58	99.74	AAL00050
ELGNPCDN_18	23227	21749	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.63	100.00	ADE32434
ELGNPCDN_2	182664	183965	Eno	0.0	enolase	86.44	99.77	ABP90468
ELGNPCDN_18	7873	5981	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.74	98.90	ABP91129
ELGNPCDN_1	232371	234080	PGM	0.0	phosphoglucomutase	84.94	99.65	ACH87041
ELGNPCDN_37	2882	3973	recA	0.0	DNA recombination and repair	84.64	95.36	AAL00560
ELGNPCDN_6	77572	76562	pdh	0.0	pyruvate dehydrogenase	83.38	99.70	ABP91006
ELGNPCDN_1	100349	101710	mnmE	0.0	central tRNA-modifying GTPase	82.46	99.56	ABP90420
ELGNPCDN_2	168248	169138	bglB	1.99e-177	putative phospho--glucosidase	87.20	99.66	AAK33487
ELGNPCDN_1	193190	194140	SP_0676	3.73e-170	transcription facot	81.39	98.45	AAK74821
ELGNPCDN_24	34724	35581	metF	1.53e-169	methionine biosynthesis enzymes	87.06	99.31	AAK74739
ELGNPCDN_12	6586	7290	covR	2.99e-127	responder protein	85.53	100.00	AAK71319
ELGNPCDN_16	27247	27918	rr01	3.62e-126	response regulator	83.93	99.56	CAB54566
ELGNPCDN_1	228404	227733	ciaR	2.24e-125	two component system response regulator	86.16	99.12	AIK75708
ELGNPCDN_1	228404	227736	CiaR	4.15e-125	two-component response regulator	87.44	99.55	AAK74935
ELGNPCDN_12	6586	7290	walR	6.80e-121	DNA-binding response regulator	82.13	100.00	ANC99504
ELGNPCDN_4	74293	74979	CovR	2.83e-120	serves to repress GAS virulence factor-encoding genes	81.66	100.00	ACE75886
ELGNPCDN_37	4146	4541	SpxA2	4.64e-77	transcriptional regulator	91.67	100.00	ERL21461
ELGNPCDN_1	88881	88480	SpxA1	6.00e-70	transcriptional regulator	82.84	100.00	ERL19273
ELGNPCDN_25	19386	19799	GrpE	1.97e-68	protein grpE	81.88	80.59	ABP89267
ELGNPCDN_4	97505	97792	spr0479	3.43e-48	essential gene	85.42	98.97	AAK99283
ELGNPCDN_2	50593	50847	spr1327	8.38e-45	essential gene	92.94	100.00	AAL00131
ELGNPCDN_20	2731	2994	spr0175	2.49e-43	pathogenitcity related	85.23	100.00	AAK98979
ELGNPCDN_20	3557	3823	spr0177	3.47e-42	essential gene	83.15	88.12	AAK98981
ELGNPCDN_8	3399	3890	RopE (M5005_Spy_1611)	4.18e-73	probable DNA-directed RNA polymerase subunit delta	82.93	85.86	AAK34603
ELGNPCDN_9	32064	29764	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	83.09	98.08	MYN69560
ELGNPCDN_6	40856	41875	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	97.35	100.00	ABJ55451