Genome ID:GCA_047607985.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 9 | 18.03 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KEODECGH_1 | 419100 | 420746 | vmlR | ARO:3004476 | vmlR | 97.81 | 100.18 | NC_000964.3 |
| KEODECGH_6 | 258568 | 261138 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| KEODECGH_4 | 221402 | 222256 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| KEODECGH_4 | 206371 | 207573 | blt | ARO:3003006 | blt | 99.50 | 100.00 | L32599.1 |
| KEODECGH_1 | 152437 | 153030 | tmrB | ARO:3003059 | tmrB | 96.95 | 100.00 | AL009126.3 |
| KEODECGH_7 | 109548 | 109865 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| KEODECGH_7 | 109210 | 109548 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| KEODECGH_1 | 102092 | 103531 | lmrB | ARO:3002813 | lmrB | 98.95 | 100.42 | JYFL01000006.1 |
| KEODECGH_1 | 89280 | 90200 | mphK | ARO:3004541 | mphK | 94.77 | 100.00 | CP010314.1 |
| KEODECGH_4 | 17026 | 18195 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KEODECGH_4 | 221402 | 222256 | aadK | Streptomycin | 98.95 | 100.00 | M26879 |
| KEODECGH_1 | 89280 | 90200 | mph(K) | Spiramycin, Telithromycin | 95.55 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KEODECGH_4 | 221405 | 222256 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| KEODECGH_1 | 419103 | 420746 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 97.81 | 100.00 | WP_003234144.1 |
| KEODECGH_1 | 89280 | 90197 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 94.77 | 100.00 | WP_003246254.1 |
| KEODECGH_9 | 160786 | 161304 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 91.33 | 100.00 | WP_003242546.1 |
| KEODECGH_5 | 154806 | 157403 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.17 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KEODECGH_11 | 3335 | 4516 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| KEODECGH_2 | 326203 | 327141 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.57 | 100.00 | NP_391077 |
| KEODECGH_5 | 255678 | 256318 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 99.84 | NP_390062 |
| KEODECGH_2 | 327161 | 334297 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.50 | 100.00 | NP_391076 |
| KEODECGH_2 | 322531 | 323316 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| KEODECGH_11 | 2871 | 3320 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| KEODECGH_11 | 1710 | 2852 | capA | 0.0 | Capsule | Immune modulation | 99.21 | 100.00 | NP_391469 |
| KEODECGH_5 | 104527 | 106290 | dep/capD | 0.0 | Capsule | Immune modulation | 99.09 | 100.00 | NP_389723 |
| KEODECGH_2 | 324556 | 326175 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.15 | 100.00 | NP_391078 |
| KEODECGH_2 | 323342 | 324538 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.08 | 100.00 | NP_391079 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KEODECGH_20 | 31797 | 32933 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| KEODECGH_28 | 11369 | 10500 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| KEODECGH_8 | 150523 | 151299 | CodY | 2.09e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KEODECGH_2 | 36780 | 36211 | ClpP | 2.32e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| KEODECGH_16 | 12020 | 11628 | spxA1 | 5.04e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| KEODECGH_16 | 12020 | 11628 | spx | 3.01e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| KEODECGH_21 | 34757 | 34515 | SpoVG | 7.52e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| KEODECGH_1 | 376338 | 376535 | CspA | 1.83e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KEODECGH_5 | 268281 | 268475 | CspD | 1.96e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| KEODECGH_17 | 43825 | 44019 | CspB | 6.99e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |