Genome ID:GCA_047780285.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHHMHPKN_44 | 58352 | 59401 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EHHMHPKN_44 | 58366 | 59401 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.09 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHHMHPKN_44 | 58355 | 59401 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| EHHMHPKN_33 | 28634 | 29815 | capB | 0.0 | Capsule | Immune modulation | 81.79 | 99.66 | NP_391471 |
| EHHMHPKN_33 | 28170 | 28619 | capC | 9.05e-118 | Capsule | Immune modulation | 84.03 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EHHMHPKN_64 | 31771 | 32907 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| EHHMHPKN_5 | 4394 | 5263 | pdxS | 1.37e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| EHHMHPKN_11 | 1365724 | 1364948 | CodY | 1.79e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| EHHMHPKN_1 | 23216 | 23608 | spxA1 | 1.28e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| EHHMHPKN_44 | 70310 | 70113 | CspA | 7.63e-31 | cold shock protein | 89.39 | 100.00 | CAA62903 |
| EHHMHPKN_61 | 41232 | 41038 | CspB | 4.85e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| EHHMHPKN_22 | 131247 | 130375 | lipA (SAUSA300_0829) | 1.78e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |