Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MKMBIGCO_2 | 72066 | 73115 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MKMBIGCO_2 | 72066 | 73101 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 87.74 | 98.67 | KR610408 |
| MKMBIGCO_38 | 132768 | 134144 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.56 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MKMBIGCO_2 | 72066 | 73109 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| MKMBIGCO_38 | 132768 | 134138 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MKMBIGCO_30 | 378448 | 379629 | capB | 0.0 | Capsule | Immune modulation | 82.46 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MKMBIGCO_9 | 31678 | 32814 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| MKMBIGCO_12 | 4307 | 5176 | pdxS | 8.75e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| MKMBIGCO_14 | 384034 | 384810 | CodY | 8.52e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| MKMBIGCO_36 | 250212 | 250604 | spxA1 | 7.69e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| MKMBIGCO_2 | 42757 | 42954 | CspA | 7.13e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| MKMBIGCO_34 | 236749 | 236555 | CspD | 9.91e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| MKMBIGCO_34 | 236749 | 236552 | CspB | 2.06e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| MKMBIGCO_2 | 42757 | 42951 | CspR | 9.34e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| MKMBIGCO_43 | 22162 | 23034 | lipA (SAUSA300_0829) | 4.92e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |