Genome ID：GCA_048381595.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	8	18.25

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
LMEFGPDI_61	138904	139497	tmrB	ARO:3003059	tmrB	97.97	100.00	AL009126.3
LMEFGPDI_61	88346	89785	lmrB	ARO:3002813	lmrB	98.74	100.42	JYFL01000006.1
LMEFGPDI_61	68758	69678	mphK	ARO:3004541	mphK	98.04	100.00	CP010314.1
LMEFGPDI_31	30719	33289	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.77	100.00	AL009126.3
LMEFGPDI_26	29017	29871	aadK	ARO:3002627	aadK	97.54	100.00	AL009126.1
LMEFGPDI_39	16898	18067	bmr	ARO:3003007	bmr	99.49	100.00	M33768.1
LMEFGPDI_26	11949	13151	blt	ARO:3003006	blt	99.75	100.00	L32599.1
LMEFGPDI_16	6454	6792	ykkC	ARO:3003063	ykkC	98.21	100.00	AL009126.1
LMEFGPDI_16	6137	6454	ykkD	ARO:3003064	ykkD	98.10	100.00	AL009126.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
LMEFGPDI_20	27568	28944	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	100.00	100.00	X08034
LMEFGPDI_26	29019	29871	aadK	Streptomycin	98.48	99.77	M26879
LMEFGPDI_61	68758	69678	mph(K)	Spiramycin, Telithromycin	97.83	100.00	NC_000964

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
LMEFGPDI_20	27571	28944	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_003242953.1
LMEFGPDI_61	68758	69675	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	98.04	100.00	WP_003246254.1
LMEFGPDI_29	34091	35731	vmlR	ABC-F type ribosomal protection protein VmlR	INTERNAL_STOP	97.62	100.00	WP_003234144.1
LMEFGPDI_26	29020	29871	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	97.54	100.00	WP_003229862.1
LMEFGPDI_20	25097	25615	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.17	100.00	WP_003242546.1
LMEFGPDI_43	2736	5333	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.83	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
LMEFGPDI_34	32940	34121	capB	0.0	Capsule	Immune modulation	99.66	100.00	NP_391471
LMEFGPDI_8	11719	12504	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.36	100.00	NP_391080
LMEFGPDI_8	15402	16340	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.36	100.00	NP_391077
LMEFGPDI_8	12530	13726	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.17	100.00	NP_391079
LMEFGPDI_8	16360	23496	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	99.08	100.00	NP_391076
LMEFGPDI_50	36395	37036	hlyIII	0.0	Hemolysin III	Exotoxin	98.91	100.00	NP_390062
LMEFGPDI_34	34604	35746	capA	0.0	Capsule	Immune modulation	98.86	100.00	NP_391469
LMEFGPDI_13	53468	55231	dep/capD	0.0	Capsule	Immune modulation	98.81	100.00	NP_389723
LMEFGPDI_34	34136	34585	capC	0.0	Capsule	Immune modulation	98.67	100.00	NP_391470
LMEFGPDI_8	13755	15374	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	98.52	100.00	NP_391078

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
LMEFGPDI_21	27911	26775	tufA	0.0	elongation factor Tu	85.75	95.69	AHM69299
LMEFGPDI_52	11114	10245	pdxS	1.10e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
LMEFGPDI_28	110958	110182	CodY	1.93e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
LMEFGPDI_1	185422	185991	ClpP	2.04e-99	part of proteolytic complex	81.05	97.44	BAB94595
LMEFGPDI_10	46301	45909	spxA1	6.24e-71	redox-responsive transcription factor	83.97	100.00	AAF21893
LMEFGPDI_10	46301	45909	spx	3.72e-69	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
LMEFGPDI_22	20482	20724	SpoVG	7.48e-39	RNA-binding protein	81.48	79.41	AAT02994
LMEFGPDI_50	48266	48460	CspD	9.57e-29	cold shock protein	81.54	98.48	CAC99957
LMEFGPDI_19	17327	17133	CspB	5.95e-28	cold shock protein	83.08	98.48	CAD00094