Genome ID：GCA_048537405.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	4	16.88

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
HAMMFLPH_1	2624652	2625506	aadK	ARO:3002627	aadK	100.00	100.00	AL009126.1
HAMMFLPH_1	2605943	2607145	blt	ARO:3003006	blt	100.00	100.00	L32599.1
HAMMFLPH_1	2383626	2384795	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
HAMMFLPH_1	1355940	1356257	ykkD	ARO:3003064	ykkD	100.00	100.00	AL009126.1
HAMMFLPH_1	1355602	1355940	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
HAMMFLPH_1	895867	898437	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	100.00	100.00	AL009126.3
HAMMFLPH_1	583824	585467	vmlR	ARO:3004476	vmlR	100.00	100.00	NC_000964.3
HAMMFLPH_1	338755	339348	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
HAMMFLPH_1	288252	289685	lmrB	ARO:3002813	lmrB	100.00	100.00	JYFL01000006.1
HAMMFLPH_1	275437	276357	mphK	ARO:3004541	mphK	100.00	100.00	CP010314.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
HAMMFLPH_1	2624652	2625506	aadK	Streptomycin	100.00	100.00	M26879
HAMMFLPH_1	275437	276357	mph(K)	Spiramycin, Telithromycin	100.00	100.00	NC_000964
HAMMFLPH_1	4076679	4078055	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	100.00	100.00	X08034

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
HAMMFLPH_1	2624655	2625506	aadK	aminoglycoside 6-adenylyltransferase AadK	EXACTX	100.00	100.00	WP_003229862.1
HAMMFLPH_1	275437	276354	mphK	macrolide 2'-phosphotransferase MphK	EXACTX	100.00	100.00	WP_003246254.1
HAMMFLPH_1	4074161	4074679	satA	streptothricin N-acetyltransferase SatA	EXACTX	100.00	100.00	WP_003242546.1
HAMMFLPH_1	4076682	4078055	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_003242953.1
HAMMFLPH_1	583827	585467	vmlR	ABC-F type ribosomal protection protein VmlR	EXACTX	100.00	100.00	WP_003234144.1
HAMMFLPH_1	2074714	2077308	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.15	99.88	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
HAMMFLPH_1	3586818	3587960	capA	0.0	Capsule	Immune modulation	100.00	100.00	NP_391469
HAMMFLPH_1	3588443	3589624	capB	0.0	Capsule	Immune modulation	100.00	100.00	NP_391471
HAMMFLPH_1	3587979	3588428	capC	0.0	Capsule	Immune modulation	100.00	100.00	NP_391470
HAMMFLPH_1	2028056	2029819	dep/capD	0.0	Capsule	Immune modulation	100.00	100.00	NP_389723
HAMMFLPH_1	3180482	3181267	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391080
HAMMFLPH_1	3176646	3177584	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391077
HAMMFLPH_1	3179260	3180456	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391079
HAMMFLPH_1	3177612	3179231	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391078
HAMMFLPH_1	3169490	3176626	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391076
HAMMFLPH_1	2184280	2184921	hlyIII	0.0	Hemolysin III	Exotoxin	100.00	100.00	NP_390062

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
HAMMFLPH_1	132473	133609	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
HAMMFLPH_1	18665	19534	pdxS	3.05e-149	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
HAMMFLPH_1	1669204	1669980	CodY	3.33e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
HAMMFLPH_1	3435206	3435775	ClpP	2.47e-98	part of proteolytic complex	81.05	97.44	BAB94595