Genome ID:GCA_049803375.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 8 | 17.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDKIOEFL_6 | 693974 | 695143 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| MDKIOEFL_6 | 452072 | 453274 | blt | ARO:3003006 | blt | 99.00 | 100.00 | L32599.1 |
| MDKIOEFL_9 | 436277 | 436615 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| MDKIOEFL_9 | 435960 | 436277 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| MDKIOEFL_6 | 435349 | 436203 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| MDKIOEFL_7 | 358726 | 359646 | mphK | ARO:3004541 | mphK | 98.37 | 100.00 | CP010314.1 |
| MDKIOEFL_7 | 345392 | 346831 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| MDKIOEFL_7 | 279612 | 280205 | tmrB | ARO:3003059 | tmrB | 97.46 | 100.00 | AL009126.3 |
| MDKIOEFL_7 | 31606 | 33252 | vmlR | ARO:3004476 | vmlR | 98.91 | 100.18 | NC_000964.3 |
| MDKIOEFL_8 | 27364 | 29934 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDKIOEFL_7 | 358726 | 359646 | mph(K) | Spiramycin, Telithromycin | 99.02 | 100.00 | NC_000964 |
| MDKIOEFL_6 | 435349 | 436203 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDKIOEFL_7 | 31606 | 33249 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.91 | 100.00 | WP_003234144.1 |
| MDKIOEFL_6 | 435349 | 436200 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| MDKIOEFL_7 | 358729 | 359646 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.37 | 100.00 | WP_003246254.1 |
| MDKIOEFL_2 | 39995 | 40513 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 92.49 | 100.00 | WP_003242546.1 |
| MDKIOEFL_6 | 994901 | 997498 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.94 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MDKIOEFL_6 | 895252 | 895893 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| MDKIOEFL_2 | 528601 | 529782 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| MDKIOEFL_2 | 954159 | 954944 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| MDKIOEFL_2 | 954970 | 956166 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| MDKIOEFL_6 | 1049980 | 1051743 | dep/capD | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_389723 |
| MDKIOEFL_2 | 530265 | 531407 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| MDKIOEFL_2 | 957842 | 958780 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.83 | 100.00 | NP_391077 |
| MDKIOEFL_2 | 958800 | 965936 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.68 | 100.00 | NP_391076 |
| MDKIOEFL_2 | 529797 | 530246 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| MDKIOEFL_2 | 956195 | 957814 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.67 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDKIOEFL_4 | 31833 | 32969 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| MDKIOEFL_3 | 11248 | 10379 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| MDKIOEFL_9 | 124827 | 124051 | CodY | 3.88e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| MDKIOEFL_2 | 690701 | 690132 | ClpP | 6.42e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| MDKIOEFL_5 | 276735 | 277127 | spxA1 | 2.45e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| MDKIOEFL_5 | 276735 | 277127 | spx | 1.46e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| MDKIOEFL_1 | 20606 | 20848 | SpoVG | 7.51e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| MDKIOEFL_7 | 79640 | 79443 | CspA | 1.96e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| MDKIOEFL_5 | 31256 | 31062 | CspB | 3.53e-27 | cold shock protein | 83.08 | 98.48 | CAD00094 |