Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 7 | 7.87 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPNANANF_14 | 52740 | 53789 | clbA | ARO:3002814 | clbA | 96.85 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LPNANANF_14 | 52754 | 53789 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 87.74 | 98.67 | KR610408 |
| LPNANANF_7 | 195188 | 196558 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.38 | 99.35 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPNANANF_14 | 52743 | 53789 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 96.85 | 100.00 | WP_012116915.1 |
| LPNANANF_7 | 196770 | 197288 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LPNANANF_12 | 505609 | 506790 | capB | 0.0 | Capsule | Immune modulation | 82.21 | 99.66 | NP_391471 |
| LPNANANF_12 | 506805 | 507254 | capC | 1.72e-112 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPNANANF_15 | 28320 | 27184 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| LPNANANF_6 | 4585 | 5454 | pdxS | 1.39e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| LPNANANF_5 | 740047 | 740823 | CodY | 1.27e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| LPNANANF_5 | 253563 | 253955 | spxA1 | 2.32e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| LPNANANF_14 | 71375 | 71178 | CspA | 1.32e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| LPNANANF_8 | 145147 | 145341 | CspD | 2.08e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| LPNANANF_14 | 71375 | 71181 | CspR | 1.73e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| LPNANANF_12 | 860105 | 860977 | lipA (SAUSA300_0829) | 3.21e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |