Genome ID:GCA_900177305.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 8 | 17.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HFBHIDMB_17 | 416722 | 417060 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| HFBHIDMB_17 | 416405 | 416722 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| HFBHIDMB_13 | 350549 | 352195 | vmlR | ARO:3004476 | vmlR | 98.91 | 100.18 | NC_000964.3 |
| HFBHIDMB_14 | 301898 | 304468 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.65 | 100.00 | AL009126.3 |
| HFBHIDMB_12 | 294235 | 295089 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| HFBHIDMB_12 | 277142 | 278344 | blt | ARO:3003006 | blt | 99.50 | 100.00 | L32599.1 |
| HFBHIDMB_13 | 97360 | 97953 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| HFBHIDMB_12 | 56371 | 57540 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| HFBHIDMB_13 | 46886 | 48319 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| HFBHIDMB_13 | 34072 | 34992 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HFBHIDMB_12 | 294235 | 295089 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| HFBHIDMB_10 | 36569 | 37945 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 98.33 | 100.00 | D12567 |
| HFBHIDMB_13 | 34072 | 34992 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HFBHIDMB_13 | 350552 | 352195 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.91 | 100.00 | WP_003234144.1 |
| HFBHIDMB_12 | 294238 | 295089 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| HFBHIDMB_10 | 36569 | 37942 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.47 | 100.00 | WP_063856081.1 |
| HFBHIDMB_13 | 34072 | 34989 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| HFBHIDMB_10 | 39916 | 40434 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 91.33 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HFBHIDMB_11 | 61605 | 62246 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| HFBHIDMB_10 | 532998 | 534179 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| HFBHIDMB_10 | 1008332 | 1009117 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| HFBHIDMB_10 | 1009143 | 1010339 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| HFBHIDMB_11 | 220121 | 221884 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| HFBHIDMB_10 | 534662 | 535804 | capA | 0.0 | Capsule | Immune modulation | 98.69 | 100.00 | NP_391469 |
| HFBHIDMB_10 | 534194 | 534643 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| HFBHIDMB_10 | 1012015 | 1012953 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391077 |
| HFBHIDMB_10 | 1012973 | 1020109 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.38 | 100.00 | NP_391076 |
| HFBHIDMB_10 | 1010368 | 1011987 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HFBHIDMB_8 | 31971 | 33107 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| HFBHIDMB_6 | 4590 | 5459 | pdxS | 1.15e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| HFBHIDMB_17 | 107931 | 107155 | CodY | 6.98e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| HFBHIDMB_10 | 692292 | 691723 | ClpP | 6.75e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| HFBHIDMB_17 | 583959 | 583567 | spxA1 | 5.49e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| HFBHIDMB_17 | 583959 | 583567 | spx | 3.27e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| HFBHIDMB_9 | 34876 | 34634 | SpoVG | 7.35e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| HFBHIDMB_13 | 306776 | 306973 | CspA | 1.65e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| HFBHIDMB_11 | 50373 | 50179 | CspD | 5.93e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| HFBHIDMB_11 | 50373 | 50176 | CspB | 1.23e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |