Genome ID:GCA_900454375.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 7 | 17.12 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DKNCIDDN_7 | 210197 | 211051 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| DKNCIDDN_5 | 210092 | 211012 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
| DKNCIDDN_5 | 196759 | 198198 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| DKNCIDDN_7 | 193104 | 194306 | blt | ARO:3003006 | blt | 99.50 | 100.00 | L32599.1 |
| DKNCIDDN_5 | 147129 | 147722 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| DKNCIDDN_15 | 105954 | 106271 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| DKNCIDDN_15 | 105616 | 105954 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| DKNCIDDN_11 | 88458 | 90101 | vmlR | ARO:3004476 | vmlR | 99.09 | 100.00 | NC_000964.3 |
| DKNCIDDN_2 | 65501 | 66670 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| DKNCIDDN_3 | 20969 | 23539 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DKNCIDDN_7 | 210197 | 211051 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| DKNCIDDN_5 | 210092 | 211012 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DKNCIDDN_11 | 88458 | 90098 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 99.09 | 100.00 | WP_003234144.1 |
| DKNCIDDN_7 | 210200 | 211051 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| DKNCIDDN_5 | 210095 | 211012 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| DKNCIDDN_6 | 38296 | 38814 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 94.80 | 100.00 | WP_003242546.1 |
| DKNCIDDN_15 | 699358 | 701955 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.41 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DKNCIDDN_14 | 185395 | 186576 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| DKNCIDDN_10 | 86760 | 87401 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| DKNCIDDN_7 | 803312 | 804097 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| DKNCIDDN_7 | 802090 | 803286 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.17 | 100.00 | NP_391079 |
| DKNCIDDN_15 | 652339 | 654102 | dep/capD | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_389723 |
| DKNCIDDN_14 | 187059 | 188201 | capA | 0.0 | Capsule | Immune modulation | 98.69 | 100.00 | NP_391469 |
| DKNCIDDN_14 | 186591 | 187040 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| DKNCIDDN_7 | 799476 | 800414 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.62 | 100.00 | NP_391077 |
| DKNCIDDN_7 | 792320 | 799456 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.53 | 100.00 | NP_391076 |
| DKNCIDDN_7 | 800442 | 802061 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.53 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DKNCIDDN_12 | 85988 | 84852 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| DKNCIDDN_6 | 87758 | 88627 | pdxS | 1.29e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| DKNCIDDN_15 | 414728 | 415504 | CodY | 5.70e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DKNCIDDN_7 | 1068121 | 1068690 | ClpP | 7.08e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| DKNCIDDN_3 | 332628 | 333020 | spxA1 | 2.52e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| DKNCIDDN_3 | 332628 | 333020 | spx | 1.50e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| DKNCIDDN_6 | 124551 | 124793 | SpoVG | 2.37e-38 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| DKNCIDDN_10 | 98633 | 98827 | CspD | 5.86e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| DKNCIDDN_10 | 98633 | 98830 | CspB | 1.22e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |