Genome ID：GCA_902652475.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
2	15	33	36.30

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
No hit found

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
LHJCHJAH_15	174073	175536	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	AF274302
LHJCHJAH_15	172736	173953	mef(A)	Erythromycin, Azithromycin	99.92	100.00	U83667

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
LHJCHJAH_15	172736	173950	mef(A)	macrolide efflux MFS transporter Mef(A)	EXACTX	100.00	100.00	WP_000417519.1
LHJCHJAH_15	174073	175533	msr(D)	ABC-F type ribosomal protection protein Msr(D)	EXACTX	100.00	100.00	WP_000420313.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
LHJCHJAH_8	42871	44331	STER_RS05320	0.0	Capsule	Immune modulation	97.26	100.00	WP_011681177
LHJCHJAH_8	42871	44331	STU_RS14650	0.0	Capsule	Immune modulation	96.92	100.21	WP_011226049
LHJCHJAH_8	42871	44331	STR_RS05265	0.0	Capsule	Immune modulation	96.37	100.21	WP_041827043
LHJCHJAH_6	340703	341554	rfbD	0.0	Capsule	Immune modulation	94.84	100.00	WP_014621820
LHJCHJAH_8	39266	40631	STER_RS05300	0.0	Capsule	Immune modulation	94.66	99.85	WP_011681173
LHJCHJAH_10	124349	124942	STR_RS05880	0.0	Capsule	Immune modulation	94.61	100.00	WP_011226149
LHJCHJAH_10	124349	124942	STER_RS06030	0.0	Capsule	Immune modulation	94.44	100.00	WP_011226149
LHJCHJAH_10	124349	124942	STU_RS15260	0.0	Capsule	Immune modulation	94.44	100.00	WP_011226149
LHJCHJAH_8	40688	41428	STER_RS05305	0.0	Capsule	Immune modulation	94.06	100.00	WP_011681174
LHJCHJAH_8	39264	40631	STU_RS14630	0.0	Capsule	Immune modulation	93.93	100.00	WP_011226045
LHJCHJAH_8	42139	42870	STER_RS05315	0.0	Capsule	Immune modulation	93.85	100.00	WP_011681176
LHJCHJAH_8	42139	42870	STU_RS14645	0.0	Capsule	Immune modulation	93.72	100.00	WP_011226048
LHJCHJAH_8	40688	41428	STU_RS14635	0.0	Capsule	Immune modulation	93.66	100.00	WP_011226046
LHJCHJAH_8	42139	42870	STR_RS05260	0.0	Capsule	Immune modulation	93.17	100.00	WP_011227248
LHJCHJAH_8	40693	41428	STR_RS05250	0.0	Capsule	Immune modulation	93.07	98.13	WP_011227246
LHJCHJAH_10	124942	125811	rfbA	0.0	Capsule	Immune modulation	91.26	100.00	WP_011681286
LHJCHJAH_18	19230	20069	cbpD	0.0	Autolysin	Exoenzyme	91.07	100.00	WP_011226733
LHJCHJAH_1	65840	67498	fbp54	0.0	FBPs	Adherence	90.36	99.94	WP_011227179
LHJCHJAH_8	41438	42130	STR_RS05255	0.0	Capsule	Immune modulation	88.47	99.86	WP_011227247
LHJCHJAH_8	41438	42130	STU_RS14640	0.0	Capsule	Immune modulation	88.47	99.86	WP_011226047
LHJCHJAH_6	14437	15447	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	88.45	99.80	WP_002986042
LHJCHJAH_15	151896	153199	eno	0.0	Streptococcal enolase	Exoenzyme	88.40	99.54	WP_000022832
LHJCHJAH_8	41438	42130	STER_RS05310	0.0	Capsule	Immune modulation	88.18	99.86	WP_011681175
LHJCHJAH_1	222984	223745	srtA	0.0	Sortase A	Exoenzyme	83.90	99.74	-
LHJCHJAH_10	123038	124084	rfbB	0.0	Capsule	Immune modulation	81.57	100.00	WP_009659423
LHJCHJAH_4	2743	4026	tig/ropA	0.0	Trigger factor	Stress survival	80.93	99.53	WP_000107753

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
LHJCHJAH_1	226434	227408	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	95.69	99.09	AAK75326
LHJCHJAH_1	214851	213778	MntE	0.0	manganese homeostasis	95.53	99.72	ABF32167
LHJCHJAH_6	140591	138285	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.54	99.22	AAK74619
LHJCHJAH_6	574876	573395	SPD_0310	0.0	UPF0371 protein SPD_0310	93.12	100.00	ABJ54480
LHJCHJAH_15	56882	57850	spr0084	0.0	pathogenitcity related	92.88	98.48	AAK98888
LHJCHJAH_1	186800	184554	metE	0.0	methionine biosynthesis enzymes	92.39	100.00	AAK74738
LHJCHJAH_18	4807	5778	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.67	100.00	ABF36968
LHJCHJAH_6	298917	300065	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	90.08	99.48	AAL00050
LHJCHJAH_11	9719	11449	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	89.95	100.00	AAK34199
LHJCHJAH_6	327268	329256	uvrB	0.0	excinuclease ABC, B subunit	89.59	100.00	AE014259_2
LHJCHJAH_2	26055	27533	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.63	100.00	ADE32434
LHJCHJAH_15	151896	153197	Eno	0.0	enolase	86.44	99.77	ABP90468
LHJCHJAH_2	41390	43282	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.42	98.90	ABP91129
LHJCHJAH_1	181633	183342	PGM	0.0	phosphoglucomutase	84.94	99.65	ACH87041
LHJCHJAH_18	40284	41375	recA	0.0	DNA recombination and repair	84.64	95.36	AAL00560
LHJCHJAH_2	158658	157648	pdh	0.0	pyruvate dehydrogenase	83.09	99.70	ABP91006
LHJCHJAH_1	52068	53429	mnmE	0.0	central tRNA-modifying GTPase	82.24	99.56	ABP90420
LHJCHJAH_15	137486	138376	bglB	2.46e-178	putative phospho--glucosidase	87.88	99.66	AAK33487
LHJCHJAH_1	140662	141612	SP_0676	3.18e-170	transcription facot	81.39	98.45	AAK74821
LHJCHJAH_1	184364	183507	metF	3.63e-170	methionine biosynthesis enzymes	88.11	99.31	AAK74739
LHJCHJAH_8	90836	90132	covR	1.45e-126	responder protein	85.11	100.00	AAK71319
LHJCHJAH_6	637801	638472	rr01	1.47e-126	response regulator	84.82	99.56	CAB54566
LHJCHJAH_1	177665	176994	ciaR	1.08e-124	two component system response regulator	85.71	99.12	AIK75708
LHJCHJAH_1	177665	176997	CiaR	1.35e-124	two-component response regulator	87.00	99.55	AAK74935
LHJCHJAH_8	90836	90132	walR	2.66e-120	DNA-binding response regulator	81.70	100.00	ANC99504
LHJCHJAH_4	159807	160493	CovR	4.70e-120	serves to repress GAS virulence factor-encoding genes	81.66	100.00	ACE75886
LHJCHJAH_18	41549	41944	SpxA2	4.17e-76	transcriptional regulator	91.67	100.00	ERL21461
LHJCHJAH_1	40598	40197	SpxA1	2.68e-69	transcriptional regulator	82.09	100.00	ERL19273
LHJCHJAH_16	50136	50549	GrpE	4.09e-68	protein grpE	81.88	80.59	ABP89267
LHJCHJAH_4	183013	183300	spr0479	9.07e-48	essential gene	84.38	98.97	AAK99283
LHJCHJAH_15	16802	17056	spr1327	9.00e-45	essential gene	92.94	100.00	AAL00131
LHJCHJAH_2	72381	72118	spr0175	9.69e-43	pathogenitcity related	85.23	100.00	AAK98979
LHJCHJAH_2	71555	71289	spr0177	1.35e-41	essential gene	83.15	88.12	AAK98981
LHJCHJAH_4	4193	4684	RopE (M5005_Spy_1611)	1.04e-72	probable DNA-directed RNA polymerase subunit delta	82.93	85.86	AAK34603
LHJCHJAH_6	140591	138291	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	83.36	98.08	MYN69560
LHJCHJAH_2	121946	122965	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	97.35	100.00	ABJ55451