Genome ID:GCA_905319135.2 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
1210416.12

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
NOGEOMFM_127411132741967aadKARO:3002627aadK97.54100.00AL009126.1
NOGEOMFM_127219402723142bltARO:3003006blt99.75100.00L32599.1
NOGEOMFM_124923502493519bmrARO:3003007bmr99.74100.00M33768.1
NOGEOMFM_113568161357133ykkDARO:3003064ykkD99.05100.00AL009126.1
NOGEOMFM_113564781356816ykkCARO:3003063ykkC100.00100.00AL009126.1
NOGEOMFM_1893339895909Bacillus subtilis mprFARO:3003324Bsub_mprF99.88100.00AL009126.3
NOGEOMFM_1591381593024vmlRARO:3004476vmlR98.35100.00NC_000964.3
NOGEOMFM_1286733288166lmrBARO:3002813lmrB99.37100.00JYFL01000006.1
NOGEOMFM_1273917274837mphKARO:3004541mphK97.71100.00CP010314.1

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
NOGEOMFM_142131054214481tet(L)Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline100.00100.00X08034
NOGEOMFM_127411152741967aadKStreptomycin98.4899.77M26879
NOGEOMFM_1273917274837mph(K)Spiramycin, Telithromycin97.50100.00NC_000964

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
NOGEOMFM_142131084214481tet(L)tetracycline efflux MFS transporter Tet(L)EXACTX100.00100.00WP_003242953.1
NOGEOMFM_1591384593024vmlRABC-F type ribosomal protection protein VmlRBLASTX98.35100.00WP_003234144.1
NOGEOMFM_1273917274834mphKmacrolide 2'-phosphotransferase MphKBLASTX97.71100.00WP_003246254.1
NOGEOMFM_127411162741967aadKaminoglycoside 6-adenylyltransferase AadKBLASTX97.54100.00WP_003229862.1
NOGEOMFM_142105884211106satAstreptothricin N-acetyltransferase SatABLASTX89.60100.00WP_003242546.1
NOGEOMFM_120540192056616rphCrifamycin-inactivating phosphotransferase RphCBLASTX81.40100.00WP_087347987.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
NOGEOMFM_122931642293805hlyIII0.0Hemolysin IIIExotoxin100.00100.00NP_390062
NOGEOMFM_137197603720941capB0.0CapsuleImmune modulation99.66100.00NP_391471
NOGEOMFM_120039942005757dep/capD0.0CapsuleImmune modulation99.49100.00NP_389723
NOGEOMFM_133052413306026dhbA0.0BacillibactinNutritional/Metabolic factor99.36100.00NP_391080
NOGEOMFM_133014053302343dhbB0.0BacillibactinNutritional/Metabolic factor99.36100.00NP_391077
NOGEOMFM_133040193305215dhbC0.0BacillibactinNutritional/Metabolic factor99.17100.00NP_391079
NOGEOMFM_132942513301385dhbF0.0BacillibactinNutritional/Metabolic factor99.0699.97NP_391076
NOGEOMFM_137181353719277capA0.0CapsuleImmune modulation98.95100.00NP_391469
NOGEOMFM_137192963719745capC0.0CapsuleImmune modulation98.67100.00NP_391470
NOGEOMFM_133023713303990dhbE0.0BacillibactinNutritional/Metabolic factor98.52100.00NP_391078

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
NOGEOMFM_1132399133535tufA0.0elongation factor Tu84.9695.69AHM69299
NOGEOMFM_11866519534pdxS3.15e-149encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS83.7998.31ACE61268
NOGEOMFM_116667141667490CodY3.44e-124nutrient-responsive regulator81.08100.00ACJ80679
NOGEOMFM_135584063558975ClpP2.55e-98part of proteolytic complex81.0597.44BAB94595