Genome ID:GCA_965136255.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFOHNJHJ_6 | 48327 | 49373 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FFOHNJHJ_6 | 48330 | 49373 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| FFOHNJHJ_3 | 10821 | 12197 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.07 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFOHNJHJ_6 | 48330 | 49373 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| FFOHNJHJ_3 | 10827 | 12197 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| FFOHNJHJ_6 | 51124 | 51642 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| FFOHNJHJ_25 | 648 | 3245 | rphC | rifamycin-inactivating phosphotransferase RphC | INTERNAL_STOP | 80.94 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FFOHNJHJ_7 | 25630 | 26811 | capB | 0.0 | Capsule | Immune modulation | 81.79 | 99.66 | NP_391471 |
| FFOHNJHJ_7 | 26826 | 27275 | capC | 1.23e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FFOHNJHJ_15 | 27922 | 26786 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| FFOHNJHJ_23 | 12500 | 11631 | pdxS | 6.40e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| FFOHNJHJ_2 | 200308 | 201084 | CodY | 3.29e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| FFOHNJHJ_4 | 326455 | 326847 | spxA1 | 4.72e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| FFOHNJHJ_6 | 65859 | 65662 | CspA | 5.27e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| FFOHNJHJ_1 | 104943 | 105137 | CspD | 1.20e-27 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| FFOHNJHJ_1 | 104943 | 105140 | CspB | 2.48e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| FFOHNJHJ_6 | 65859 | 65665 | CspR | 2.61e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |