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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	KEGG_ko	KEGG_Pathway	BRITE	Description
CLLFOCLF_00006	3.14e-43	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLLFOCLF_00007	7.21e-123	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLLFOCLF_00008	1.51e-75	cadX	-	-	K	ko:K21903	-	ko00000,ko03000	Bacterial regulatory protein, arsR family
CLLFOCLF_00009	1.23e-95	cadD	-	-	P	-	-	-	Cadmium resistance transporter
CLLFOCLF_00010	5.12e-08	cadD	-	-	P	-	-	-	Cadmium resistance transporter
CLLFOCLF_00011	2.78e-265	-	-	-	L	ko:K07497	-	ko00000	PFAM Integrase catalytic region
CLLFOCLF_00012	3.57e-61	-	-	-	S	-	-	-	VRR_NUC
CLLFOCLF_00013	1.07e-88	-	-	-	S	ko:K06919	-	ko00000	Phage plasmid primase, P4
CLLFOCLF_00014	1.49e-69	-	-	-	L	ko:K07491	-	ko00000	Transposase IS200 like
CLLFOCLF_00015	1.39e-232	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLLFOCLF_00016	6.88e-144	-	-	-	I	-	-	-	Acid phosphatase homologues
CLLFOCLF_00017	0.0	agl	3.2.1.20	GH31	G	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 31 family
CLLFOCLF_00018	1.91e-108	-	-	-	-	-	-	-	-
CLLFOCLF_00019	3.57e-94	-	-	-	V	ko:K07451	-	ko00000,ko01000,ko02048	HNH nucleases
CLLFOCLF_00020	7.99e-120	-	-	-	-	-	-	-	-
CLLFOCLF_00021	1.07e-254	-	-	-	KL	-	-	-	DNA methylase
CLLFOCLF_00022	1.73e-67	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
CLLFOCLF_00023	3.59e-34	-	-	-	S	-	-	-	Domain of unknown function (DUF5049)
CLLFOCLF_00024	0.0	-	-	-	S	-	-	-	overlaps another CDS with the same product name
CLLFOCLF_00027	1.33e-15	-	-	-	K	-	-	-	Antidote-toxin recognition MazE, bacterial antitoxin
CLLFOCLF_00028	2.89e-276	-	-	-	S	-	-	-	Phage portal protein
CLLFOCLF_00029	5.25e-104	-	3.4.21.92	-	OU	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S14 family
CLLFOCLF_00030	5.05e-217	-	-	-	S	-	-	-	Phage capsid family
CLLFOCLF_00031	1.93e-42	-	-	-	S	-	-	-	Phage gp6-like head-tail connector protein
CLLFOCLF_00032	3.47e-61	-	-	-	S	-	-	-	Phage head-tail joining protein
CLLFOCLF_00033	8.23e-68	-	-	-	S	-	-	-	Bacteriophage holin family
CLLFOCLF_00034	1.12e-10	-	-	-	-	-	-	-	-
CLLFOCLF_00035	2.33e-144	-	-	-	L	-	-	-	Recombinase zinc beta ribbon domain
CLLFOCLF_00036	1.09e-08	-	-	-	L	ko:K06400	-	ko00000	Psort location Cytoplasmic, score
CLLFOCLF_00037	1.39e-248	-	-	-	L	ko:K06400	-	ko00000	Recombinase
CLLFOCLF_00039	0.0	rumA_2	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CLLFOCLF_00040	7.79e-237	dagK	2.7.1.107	-	G	ko:K07029	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko01000	Lipid kinase
CLLFOCLF_00041	0.0	gatB	6.3.5.6, 6.3.5.7	-	J	ko:K02434	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CLLFOCLF_00042	0.0	gatA	6.3.5.6, 6.3.5.7	-	J	ko:K02433	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
CLLFOCLF_00043	2.75e-66	gatC	6.3.5.6, 6.3.5.7	-	J	ko:K02435	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CLLFOCLF_00044	1.29e-259	camS	-	-	S	-	-	-	sex pheromone
CLLFOCLF_00045	0.0	ligA	6.5.1.2	-	L	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	ko00000,ko00001,ko01000,ko03032,ko03400	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CLLFOCLF_00046	0.0	pcrA	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase
CLLFOCLF_00047	4.55e-267	purK2	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
CLLFOCLF_00048	2.75e-130	xpt	2.4.2.22	-	F	ko:K03816	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
CLLFOCLF_00049	5.09e-148	acmA	3.2.1.17, 3.2.1.96	-	NU	ko:K01185,ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	mannosyl-glycoprotein
CLLFOCLF_00050	2.58e-179	budC	1.1.1.304, 1.1.1.76	-	IQ	ko:K03366	ko00650,map00650	ko00000,ko00001,ko01000	reductase
CLLFOCLF_00051	3.94e-85	rpsI	-	-	J	ko:K02996	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS9 family
CLLFOCLF_00052	9.25e-103	rplM	-	-	J	ko:K02871	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CLLFOCLF_00053	1.75e-181	truA	5.4.99.12	-	J	ko:K06173	-	ko00000,ko01000,ko03016	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
CLLFOCLF_00054	2.89e-181	ecfT	-	-	U	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLLFOCLF_00055	3.8e-194	ecfA2	-	-	P	ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLLFOCLF_00056	2.96e-178	ecfA1	-	-	P	ko:K16786	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLLFOCLF_00057	8.08e-83	rplQ	-	-	J	ko:K02879	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L17
CLLFOCLF_00058	2.19e-220	rpoA	2.7.7.6	-	K	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLLFOCLF_00059	1.62e-83	rpsK	-	-	J	ko:K02948	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CLLFOCLF_00060	2.19e-75	rpsM	-	-	J	ko:K02952	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CLLFOCLF_00061	5.79e-21	rpmJ	-	-	J	ko:K02919	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL36 family
CLLFOCLF_00062	2.41e-45	infA	-	-	J	ko:K02518	-	ko00000,ko03012	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CLLFOCLF_00063	1.51e-159	adk	2.7.4.3	-	F	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
CLLFOCLF_00064	8.24e-306	secY	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
CLLFOCLF_00065	2.03e-91	rplO	-	-	J	ko:K02876	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
CLLFOCLF_00066	5.94e-34	rpmD	-	-	J	ko:K02907	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L30
CLLFOCLF_00067	5.95e-112	rpsE	-	-	J	ko:K02988	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CLLFOCLF_00068	5.03e-75	rplR	-	-	J	ko:K02881	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CLLFOCLF_00069	6.12e-123	rplF	-	-	J	ko:K02933	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CLLFOCLF_00070	1.54e-87	rpsH	-	-	J	ko:K02994	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CLLFOCLF_00071	4.97e-40	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CLLFOCLF_00072	7.42e-125	rplE	-	-	J	ko:K02931	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CLLFOCLF_00073	2.58e-65	rplX	-	-	J	ko:K02895	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CLLFOCLF_00074	3.62e-79	rplN	-	-	J	ko:K02874	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CLLFOCLF_00075	1.1e-55	rpsQ	-	-	J	ko:K02961	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CLLFOCLF_00076	5.49e-38	rpmC	-	-	J	ko:K02904	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uL29 family
CLLFOCLF_00077	1.96e-98	rplP	-	-	J	ko:K02878	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CLLFOCLF_00078	9.81e-157	rpsC	-	-	J	ko:K02982	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CLLFOCLF_00079	4.36e-70	rplV	-	-	J	ko:K02890	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CLLFOCLF_00080	5.72e-62	rpsS	-	-	J	ko:K02965	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CLLFOCLF_00081	1.16e-203	rplB	-	-	J	ko:K02886	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CLLFOCLF_00082	4.22e-60	rplW	-	-	J	ko:K02892	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
CLLFOCLF_00083	6.64e-139	rplD	-	-	J	ko:K02926	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the polypeptide exit tunnel
CLLFOCLF_00084	5.45e-153	rplC	-	-	J	ko:K02906	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CLLFOCLF_00085	1.75e-63	rpsJ	-	-	J	ko:K02946	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Involved in the binding of tRNA to the ribosomes
CLLFOCLF_00087	1.45e-291	-	-	-	-	-	-	-	-
CLLFOCLF_00088	1.39e-82	repB	-	-	L	-	-	-	Initiator Replication protein
CLLFOCLF_00090	2.26e-46	arsR	-	-	K	ko:K03892	-	ko00000,ko03000	helix_turn_helix, Arsenical Resistance Operon Repressor
CLLFOCLF_00091	1e-213	arsB	-	-	P	ko:K03325	-	ko00000,ko02000	Sodium Bile acid symporter family
CLLFOCLF_00092	1.89e-36	arsC	1.20.4.1	-	T	ko:K03741	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLLFOCLF_00093	8.28e-20	arsC	1.20.4.1	-	T	ko:K03741	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLLFOCLF_00094	2.17e-56	arsR	-	-	K	ko:K03892	-	ko00000,ko03000	helix_turn_helix, Arsenical Resistance Operon Repressor
CLLFOCLF_00095	2.74e-38	arsB	-	-	P	ko:K03325	-	ko00000,ko02000	Sodium Bile acid symporter family
CLLFOCLF_00096	1.97e-15	-	-	-	M	-	-	-	Rib/alpha-like repeat
CLLFOCLF_00097	0.0	-	-	-	J	-	-	-	Elongation factor G, domain IV
CLLFOCLF_00099	3.3e-124	-	-	-	L	-	-	-	Integrase
CLLFOCLF_00100	2.2e-70	-	-	-	S	-	-	-	Phage derived protein Gp49-like (DUF891)
CLLFOCLF_00101	1.85e-127	pinR1	-	-	L	-	-	-	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed
CLLFOCLF_00102	9.83e-148	-	-	-	K	ko:K09017	-	ko00000,ko03000	Transcriptional regulator
CLLFOCLF_00103	0.0	-	-	-	M	ko:K01992	-	ko00000,ko00002,ko02000	Exporter of polyketide antibiotics
CLLFOCLF_00104	2.35e-215	ybhF_1	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
CLLFOCLF_00105	9.49e-282	rodA	-	-	D	ko:K05837	-	ko00000,ko03036	Belongs to the SEDS family
CLLFOCLF_00106	4.61e-44	-	-	-	S	-	-	-	Protein of unknown function (DUF2969)
CLLFOCLF_00107	3.77e-56	ytjA	-	-	S	ko:K08998	-	ko00000	Could be involved in insertion of integral membrane proteins into the membrane
CLLFOCLF_00108	2.57e-227	mbl	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	Cell shape determining protein MreB Mrl
CLLFOCLF_00109	3e-308	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CLLFOCLF_00110	1.76e-45	ywzB	-	-	S	-	-	-	Protein of unknown function (DUF1146)
CLLFOCLF_00111	6.05e-88	atpC	-	-	C	ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane
CLLFOCLF_00112	0.0	atpD	3.6.3.14	-	C	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CLLFOCLF_00113	7.51e-212	atpG	-	-	C	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CLLFOCLF_00114	0.0	atpA	3.6.3.14	-	C	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CLLFOCLF_00115	6.84e-121	atpH	-	-	C	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CLLFOCLF_00116	1.07e-95	atpF	-	-	C	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CLLFOCLF_00117	1.26e-29	atpE	-	-	C	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CLLFOCLF_00118	4.63e-162	atpB	-	-	C	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko03110	it plays a direct role in the translocation of protons across the membrane
CLLFOCLF_00119	9.76e-295	pyrP	-	-	F	ko:K02824	-	ko00000,ko02000	Permease
CLLFOCLF_00120	2.84e-167	yibF	-	-	S	-	-	-	overlaps another CDS with the same product name
CLLFOCLF_00121	1.92e-245	yibE	-	-	S	-	-	-	overlaps another CDS with the same product name
CLLFOCLF_00122	0.0	ptsI	2.7.3.9	-	G	ko:K08483	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLLFOCLF_00123	6.68e-150	upp	2.4.2.9	-	F	ko:K00761	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CLLFOCLF_00124	4.98e-291	glyA	2.1.2.1	-	E	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CLLFOCLF_00125	6.29e-250	ywlC	2.7.7.87	-	J	ko:K07566	-	ko00000,ko01000,ko03009,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
CLLFOCLF_00126	1.73e-213	prmC	2.1.1.297	-	J	ko:K02493	-	ko00000,ko01000,ko03012	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
CLLFOCLF_00127	1.73e-248	prfA	-	-	J	ko:K02835	-	ko00000,ko03012	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CLLFOCLF_00128	6.8e-140	tdk	2.7.1.21	-	F	ko:K00857	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	thymidine kinase
CLLFOCLF_00129	0.0	murE2	6.3.2.13	-	M	ko:K01928	ko00300,ko00550,map00300,map00550	ko00000,ko00001,ko01000,ko01011	Mur ligase, middle domain
CLLFOCLF_00130	6.91e-173	-	-	-	S	ko:K07009	-	ko00000	CobB/CobQ-like glutamine amidotransferase domain
CLLFOCLF_00152	6.97e-27	-	-	-	-	-	-	-	-
CLLFOCLF_00161	3.04e-147	dgk2	-	-	F	-	-	-	deoxynucleoside kinase
CLLFOCLF_00162	0.0	lysP	-	-	E	ko:K03293,ko:K11733	-	ko00000,ko02000	amino acid
CLLFOCLF_00163	1.69e-07	-	2.3.1.128	-	J	ko:K03790	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
CLLFOCLF_00164	6.31e-150	-	-	-	I	-	-	-	phosphatase
CLLFOCLF_00165	1.75e-105	-	-	-	S	-	-	-	Threonine/Serine exporter, ThrE
CLLFOCLF_00166	2.85e-164	-	-	-	S	-	-	-	Putative threonine/serine exporter
CLLFOCLF_00167	2.54e-42	cspC	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock protein
CLLFOCLF_00168	3.16e-159	mntR	-	-	K	ko:K03709	-	ko00000,ko03000	iron dependent repressor
CLLFOCLF_00169	1.58e-209	-	-	-	P	ko:K16264	-	ko00000,ko02000	cation diffusion facilitator family transporter
CLLFOCLF_00170	2.99e-151	-	-	-	S	-	-	-	membrane
CLLFOCLF_00171	7.81e-141	-	-	-	S	-	-	-	VIT family
CLLFOCLF_00172	4.83e-108	-	-	-	T	-	-	-	Belongs to the universal stress protein A family
CLLFOCLF_00173	1.39e-173	glnQ	-	-	E	ko:K10041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_00174	6.38e-194	peb1A	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLLFOCLF_00175	5.24e-143	glnM	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLLFOCLF_00176	3.65e-141	glnP	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLLFOCLF_00177	8.11e-282	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
CLLFOCLF_00178	0.0	rnjA	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLLFOCLF_00179	6.7e-74	-	-	-	-	-	-	-	-
CLLFOCLF_00180	3.09e-97	-	-	-	K	-	-	-	MerR HTH family regulatory protein
CLLFOCLF_00181	0.0	ycnB	-	-	U	-	-	-	Belongs to the major facilitator superfamily
CLLFOCLF_00182	3.76e-160	-	-	-	S	-	-	-	Domain of unknown function (DUF4811)
CLLFOCLF_00183	2.49e-87	yneR	-	-	S	-	-	-	Belongs to the HesB IscA family
CLLFOCLF_00184	0.0	-	-	-	S	-	-	-	membrane
CLLFOCLF_00185	0.0	pbp2b	-	-	M	ko:K00687,ko:K12553,ko:K21465,ko:K21466	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
CLLFOCLF_00186	1.53e-29	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
CLLFOCLF_00187	1.61e-130	fthC	6.3.3.2	-	H	ko:K01934	ko00670,ko01100,map00670,map01100	ko00000,ko00001,ko01000	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CLLFOCLF_00188	1.04e-141	gluP	3.4.21.105	-	S	ko:K19225	-	ko00000,ko01000,ko01002	Peptidase, S54 family
CLLFOCLF_00189	7.07e-48	yqgQ	-	-	S	-	-	-	Bacterial protein of unknown function (DUF910)
CLLFOCLF_00190	4.16e-234	glcK	2.7.1.2	-	G	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Glucokinase
CLLFOCLF_00191	7.66e-88	yqhL	-	-	P	-	-	-	Rhodanese-like protein
CLLFOCLF_00192	1.18e-30	-	-	-	S	-	-	-	Protein of unknown function (DUF3042)
CLLFOCLF_00193	2.99e-219	miaA	2.5.1.75	-	F	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	ko00000,ko00001,ko01000,ko01006,ko03016	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CLLFOCLF_00194	0.0	glnA	6.3.1.2	-	E	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	ko00000,ko00001,ko01000,ko04147	glutamine synthetase
CLLFOCLF_00195	0.0	gltX	6.1.1.24	-	J	ko:K09698	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CLLFOCLF_00196	8.73e-28	araT	2.6.1.57	-	E	ko:K00832,ko:K00841	ko00270,ko00300,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLLFOCLF_00197	1.28e-18	-	-	-	-	-	-	-	-
CLLFOCLF_00198	1.69e-197	-	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
CLLFOCLF_00199	1.11e-128	msrA	1.8.4.11	-	C	ko:K07304	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CLLFOCLF_00200	1.08e-67	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
CLLFOCLF_00201	1.39e-202	-	-	-	-	-	-	-	-
CLLFOCLF_00202	2.04e-230	-	-	-	-	-	-	-	-
CLLFOCLF_00203	4.54e-111	-	-	-	S	-	-	-	Protein conserved in bacteria
CLLFOCLF_00207	7.88e-135	-	-	-	K	-	-	-	Transcriptional regulator
CLLFOCLF_00208	1.21e-135	-	-	-	L	-	-	-	Integrase
CLLFOCLF_00209	4.34e-45	-	-	-	S	ko:K07473	-	ko00000,ko02048	RelB antitoxin
CLLFOCLF_00210	7.42e-59	-	-	-	-	-	-	-	-
CLLFOCLF_00212	2.36e-299	-	-	-	-	-	-	-	-
CLLFOCLF_00213	2.05e-77	-	-	-	-	-	-	-	-
CLLFOCLF_00214	1.99e-38	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
CLLFOCLF_00215	6.57e-121	-	-	-	J	-	-	-	Aminoglycoside-2''-adenylyltransferase
CLLFOCLF_00216	1.85e-20	pre	-	-	D	-	-	-	plasmid recombination enzyme
CLLFOCLF_00217	3.27e-294	-	-	-	EGP	ko:K08368	-	ko00000,ko02000	Sugar (and other) transporter
CLLFOCLF_00218	0.0	yhdG	-	-	E	ko:K03294	-	ko00000	Amino Acid
CLLFOCLF_00219	3.46e-95	-	-	-	F	-	-	-	Nudix hydrolase
CLLFOCLF_00220	2.66e-132	gmk2	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Guanylate kinase
CLLFOCLF_00221	1.48e-107	zur	-	-	P	ko:K02076,ko:K03711	-	ko00000,ko03000	Belongs to the Fur family
CLLFOCLF_00222	1.26e-30	-	3.2.1.14	GH18	-	ko:K01183	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	-
CLLFOCLF_00223	5.43e-192	-	-	-	-	-	-	-	-
CLLFOCLF_00224	5.02e-52	pspC	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	positive regulation of macromolecule biosynthetic process
CLLFOCLF_00225	7.15e-122	-	-	-	K	-	-	-	Transcriptional regulator (TetR family)
CLLFOCLF_00226	0.0	yhgE	-	-	V	ko:K01421	-	ko00000	domain protein
CLLFOCLF_00227	2.5e-230	-	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLLFOCLF_00228	1.74e-12	-	-	-	S	-	-	-	CsbD-like
CLLFOCLF_00229	1.34e-47	-	-	-	S	-	-	-	Transglycosylase associated protein
CLLFOCLF_00230	2.93e-297	hflX	-	-	S	ko:K03665	-	ko00000,ko03009	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CLLFOCLF_00231	1.64e-162	pgm3	-	-	G	-	-	-	phosphoglycerate mutase
CLLFOCLF_00232	1.1e-146	-	-	-	S	ko:K03975	-	ko00000	SNARE associated Golgi protein
CLLFOCLF_00233	0.0	helD	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	DNA helicase
CLLFOCLF_00234	3.89e-49	-	-	-	Q	-	-	-	pyridine nucleotide-disulphide oxidoreductase
CLLFOCLF_00235	1.45e-201	-	-	-	EG	-	-	-	EamA-like transporter family
CLLFOCLF_00236	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
CLLFOCLF_00237	2.39e-225	coaA	2.7.1.33	-	F	ko:K00867	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Pantothenic acid kinase
CLLFOCLF_00238	9.81e-279	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
CLLFOCLF_00240	0.0	guaA	6.3.5.2	-	F	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the synthesis of GMP from XMP
CLLFOCLF_00245	2.87e-42	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLLFOCLF_00246	9.9e-39	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLLFOCLF_00247	9.46e-264	spxB	1.2.3.3, 1.2.5.1, 2.2.1.6, 4.1.1.8	-	EH	ko:K00156,ko:K00158,ko:K01577,ko:K01652	ko00290,ko00620,ko00630,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00620,map00630,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TPP enzyme family
CLLFOCLF_00248	2.68e-36	spxB	1.2.3.3, 1.2.5.1, 2.2.1.6, 4.1.1.8	-	EH	ko:K00156,ko:K00158,ko:K01577,ko:K01652	ko00290,ko00620,ko00630,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00620,map00630,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TPP enzyme family
CLLFOCLF_00249	1.62e-178	-	-	-	S	ko:K09861	-	ko00000	Belongs to the UPF0246 family
CLLFOCLF_00250	6.62e-177	-	-	-	S	-	-	-	Membrane
CLLFOCLF_00251	1.36e-96	-	4.4.1.5	-	E	ko:K01759	ko00620,map00620	ko00000,ko00001,ko01000	Glyoxalase
CLLFOCLF_00252	2.77e-109	XK27_05190	-	-	S	-	-	-	Protein of unknown function (DUF1694)
CLLFOCLF_00253	1.22e-305	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
CLLFOCLF_00254	6e-60	-	-	-	-	-	-	-	-
CLLFOCLF_00255	1.95e-109	uspA	-	-	T	-	-	-	universal stress protein
CLLFOCLF_00256	3.29e-259	araR	-	-	K	ko:K02103	-	ko00000,ko03000	Transcriptional regulator
CLLFOCLF_00257	2.71e-197	yvgN	-	-	S	-	-	-	Aldo keto reductase
CLLFOCLF_00258	2.65e-38	maa	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose O-acetyltransferase
CLLFOCLF_00259	1.1e-65	maa	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose O-acetyltransferase
CLLFOCLF_00260	0.0	araA	5.3.1.4	-	G	ko:K01804	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of L-arabinose to L-ribulose
CLLFOCLF_00261	1.34e-178	araD	5.1.3.4	-	G	ko:K03077	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
CLLFOCLF_00262	0.0	araB	2.7.1.16	-	G	ko:K00853	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko01000	carbohydrate kinase FGGY
CLLFOCLF_00263	0.0	araP	-	-	U	-	-	-	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
CLLFOCLF_00264	1.82e-191	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLLFOCLF_00265	7.38e-274	ddl	6.3.2.4	-	F	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Belongs to the D-alanine--D-alanine ligase family
CLLFOCLF_00266	2.4e-29	-	-	-	-	-	-	-	-
CLLFOCLF_00267	7.9e-130	-	-	-	-	-	-	-	-
CLLFOCLF_00269	1.69e-71	-	1.6.5.2	-	GM	ko:K19267	ko00130,ko01110,map00130,map01110	ko00000,ko00001,ko01000	NAD(P)H-binding
CLLFOCLF_00271	1.36e-39	-	-	-	S	-	-	-	Protein of unknown function (DUF4065)
CLLFOCLF_00272	8.76e-64	doc	-	-	S	ko:K07341	-	ko00000,ko02048	Fic/DOC family
CLLFOCLF_00273	1.21e-14	-	-	-	-	-	-	-	-
CLLFOCLF_00276	1.87e-219	mmuM	2.1.1.10	-	H	ko:K00547	ko00270,ko01100,ko01110,map00270,map01100,map01110	ko00000,ko00001,ko01000	homocysteine S-methyltransferase
CLLFOCLF_00277	6.23e-316	ybgF	-	-	E	ko:K02205,ko:K03293,ko:K16235,ko:K16236	-	ko00000,ko02000	amino acid
CLLFOCLF_00279	6.49e-49	-	-	-	-	ko:K18829	-	ko00000,ko02048	-
CLLFOCLF_00281	0.0	snf	-	-	KL	-	-	-	domain protein
CLLFOCLF_00282	6.86e-184	ywqE	3.1.3.48	-	GM	ko:K01104	-	ko00000,ko01000	PHP domain protein
CLLFOCLF_00283	1.85e-264	sbcD	-	-	L	ko:K03547	-	ko00000,ko03400	SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity
CLLFOCLF_00284	0.0	sbcC	-	-	L	ko:K03546	-	ko00000,ko03400	Putative exonuclease SbcCD, C subunit
CLLFOCLF_00285	9.38e-22	-	-	-	L	-	-	-	nuclease
CLLFOCLF_00286	0.0	XK27_00340	3.1.3.5	-	F	ko:K01081	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
CLLFOCLF_00287	5.24e-92	-	-	-	-	-	-	-	-
CLLFOCLF_00288	1.95e-131	-	-	-	D	ko:K04095	-	ko00000,ko03036	Fic/DOC family
CLLFOCLF_00289	5.6e-158	nagB	3.5.99.6	-	G	ko:K02564	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
CLLFOCLF_00290	1.29e-194	-	-	-	G	-	-	-	Belongs to the phosphoglycerate mutase family
CLLFOCLF_00291	4.15e-34	-	-	-	-	-	-	-	-
CLLFOCLF_00292	2.52e-186	-	-	-	-	-	-	-	-
CLLFOCLF_00294	3.18e-301	tyrS	6.1.1.1	-	J	ko:K01866	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CLLFOCLF_00295	1.12e-226	-	-	-	-	-	-	-	-
CLLFOCLF_00296	5.27e-169	gpmA	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CLLFOCLF_00297	1.17e-309	purD	6.3.4.13	-	F	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the GARS family
CLLFOCLF_00298	0.0	purH	2.1.2.3, 3.5.4.10	-	F	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	ko00000,ko00001,ko00002,ko01000,ko04147	Bifunctional purine biosynthesis protein PurH
CLLFOCLF_00299	1.37e-134	purN	2.1.2.2	-	F	ko:K11175	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CLLFOCLF_00300	4.6e-249	purM	6.3.3.1	-	F	ko:K01933	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoribosylformylglycinamidine cyclo-ligase
CLLFOCLF_00301	0.0	purF	2.4.2.14	-	F	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CLLFOCLF_00302	0.0	purL	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CLLFOCLF_00303	1.15e-162	purQ	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CLLFOCLF_00304	4.5e-50	purS	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CLLFOCLF_00305	5.23e-170	purC	6.3.2.6	-	F	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the SAICAR synthetase family
CLLFOCLF_00306	0.0	purB	4.3.2.2	-	F	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CLLFOCLF_00307	5.01e-275	purK	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CLLFOCLF_00308	1.43e-106	purE	5.4.99.18	-	F	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CLLFOCLF_00309	4.96e-127	thrB	2.7.1.39	-	F	ko:K00872	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
CLLFOCLF_00310	3.61e-219	hom	1.1.1.3	-	E	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	homoserine dehydrogenase
CLLFOCLF_00311	6.23e-233	thrC	4.2.3.1	-	E	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Threonine synthase
CLLFOCLF_00312	9.67e-31	rhaS4	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
CLLFOCLF_00313	6.08e-164	budA	4.1.1.5	-	H	ko:K01575	ko00650,ko00660,map00650,map00660	ko00000,ko00001,ko01000	Belongs to the alpha-acetolactate decarboxylase family
CLLFOCLF_00314	0.0	alsS	2.2.1.6	-	EH	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TPP enzyme family
CLLFOCLF_00315	1.05e-171	-	-	-	L	ko:K07487	-	ko00000	Transposase
CLLFOCLF_00316	7.44e-82	-	-	-	L	ko:K07487	-	ko00000	Transposase
CLLFOCLF_00317	0.0	fusA	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CLLFOCLF_00318	2.06e-108	rpsG	-	-	J	ko:K02992	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
CLLFOCLF_00319	2.51e-94	rpsL	-	-	J	ko:K02950	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CLLFOCLF_00320	8.83e-141	comC	3.4.23.43	-	NOU	ko:K02236,ko:K02654	-	ko00000,ko00002,ko01000,ko01002,ko02035,ko02044	Type II secretory pathway prepilin signal peptidase PulO and related peptidases
CLLFOCLF_00321	1.38e-158	-	-	-	-	-	-	-	-
CLLFOCLF_00322	0.0	rpoC	2.7.7.6	-	K	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLLFOCLF_00323	0.0	rpoB	2.7.7.6	-	K	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLLFOCLF_00324	2.09e-143	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
CLLFOCLF_00325	0.0	clpC	-	-	O	ko:K03696	ko01100,map01100	ko00000,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
CLLFOCLF_00326	2.81e-101	ctsR	-	-	K	ko:K03708	-	ko00000,ko03000	Belongs to the CtsR family
CLLFOCLF_00327	2.56e-249	adhP	1.1.1.1	-	C	ko:K00001,ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	alcohol dehydrogenase
CLLFOCLF_00328	1.36e-198	-	-	-	S	ko:K06889	-	ko00000	Hydrolases of the alpha beta superfamily
CLLFOCLF_00329	9.29e-220	yjbO	5.4.99.23	-	G	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
CLLFOCLF_00330	2.07e-196	nadK	2.7.1.23	-	F	ko:K00858	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CLLFOCLF_00331	7.45e-150	yjbM	2.7.6.5	-	S	ko:K07816	ko00230,map00230	ko00000,ko00001,ko01000	RelA SpoT domain protein
CLLFOCLF_00332	3.29e-146	yjbH	-	-	Q	-	-	-	Thioredoxin
CLLFOCLF_00333	0.0	pepDA	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLLFOCLF_00334	6.57e-253	coiA	-	-	S	ko:K06198	-	ko00000	Competence protein
CLLFOCLF_00335	3.67e-153	mecA	-	-	NOT	ko:K16511	-	ko00000	Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
CLLFOCLF_00336	2.87e-88	spxA	-	-	K	ko:K16509	-	ko00000	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
CLLFOCLF_00337	5.33e-103	traP	1.14.99.57	-	S	ko:K21481	-	ko00000,ko01000	enzyme involved in biosynthesis of extracellular polysaccharides
CLLFOCLF_00338	3.03e-83	rplS	-	-	J	ko:K02884	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
CLLFOCLF_00339	2.85e-100	-	-	-	E	ko:K03294	-	ko00000	amino acid
CLLFOCLF_00340	3.62e-206	-	-	-	E	ko:K03294	-	ko00000	amino acid
CLLFOCLF_00341	5.46e-183	trmD	2.1.1.228	-	J	ko:K00554	-	ko00000,ko01000,ko03016	Belongs to the RNA methyltransferase TrmD family
CLLFOCLF_00342	5.33e-119	rimM	-	-	J	ko:K02860	-	ko00000,ko03009	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CLLFOCLF_00343	5.32e-53	ylqC	-	-	S	ko:K06960	-	ko00000	Belongs to the UPF0109 family
CLLFOCLF_00344	4.94e-58	rpsP	-	-	J	ko:K02959	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bS16 family
CLLFOCLF_00345	0.0	ffh	3.6.5.4	-	U	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko01000,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CLLFOCLF_00346	4.23e-76	ylxM	-	-	S	ko:K09787	-	ko00000	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
CLLFOCLF_00347	4.05e-258	ftsY	-	-	U	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
CLLFOCLF_00348	0.0	smc	-	-	D	ko:K03529	-	ko00000,ko03036	Required for chromosome condensation and partitioning
CLLFOCLF_00349	6.38e-168	rnc	3.1.26.3	-	J	ko:K03685	ko03008,ko05205,map03008,map05205	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
CLLFOCLF_00350	1.81e-50	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLLFOCLF_00351	4.72e-241	plsX	2.3.1.15	-	I	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
CLLFOCLF_00352	0.0	recG	3.6.4.12	-	L	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CLLFOCLF_00353	0.0	yloV	-	-	S	ko:K07030	-	ko00000	DAK2 domain fusion protein YloV
CLLFOCLF_00354	1.05e-77	yloU	-	-	S	-	-	-	Asp23 family, cell envelope-related function
CLLFOCLF_00355	1.1e-34	rpmB	-	-	J	ko:K02902	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL28 family
CLLFOCLF_00356	1.57e-155	thiN	2.7.6.2	-	H	ko:K00949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000	thiamine pyrophosphokinase
CLLFOCLF_00357	4.49e-151	rpe	5.1.3.1	-	G	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ribulose-phosphate 3-epimerase family
CLLFOCLF_00358	4.7e-206	rsgA	3.1.3.100	-	S	ko:K06949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
CLLFOCLF_00359	0.0	prkC	2.7.11.1	-	KLT	ko:K08884,ko:K12132	-	ko00000,ko01000,ko01001	serine threonine protein kinase
CLLFOCLF_00360	3.36e-165	stp	3.1.3.16	-	T	ko:K20074	-	ko00000,ko01000,ko01009	phosphatase
CLLFOCLF_00361	0.0	sun	2.1.1.176	-	J	ko:K03500	-	ko00000,ko01000,ko03009	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CLLFOCLF_00362	1.43e-222	fmt	2.1.2.9	-	J	ko:K00604	ko00670,ko00970,map00670,map00970	ko00000,ko00001,ko01000	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CLLFOCLF_00363	0.0	priA	-	-	L	ko:K04066	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CLLFOCLF_00364	2.62e-265	coaBC	4.1.1.36, 6.3.2.5	-	H	ko:K01598,ko:K13038	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CLLFOCLF_00365	6.66e-43	rpoZ	2.7.7.6	-	K	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
CLLFOCLF_00366	3.59e-147	gmk	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Essential for recycling GMP and indirectly, cGMP
CLLFOCLF_00367	7.12e-69	-	-	-	-	-	-	-	-
CLLFOCLF_00368	0.0	recN	-	-	L	ko:K03631	-	ko00000,ko03400	May be involved in recombinational repair of damaged DNA
CLLFOCLF_00369	2.63e-99	argR2	-	-	K	ko:K03402	-	ko00000,ko03000	Regulates arginine biosynthesis genes
CLLFOCLF_00370	8.04e-191	rrmJ	2.1.1.226, 2.1.1.227	-	J	ko:K06442	-	ko00000,ko01000,ko03009	Ribosomal RNA large subunit methyltransferase J
CLLFOCLF_00371	4.13e-197	ispA	2.5.1.1, 2.5.1.10, 2.5.1.29	-	H	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01006	Belongs to the FPP GGPP synthase family
CLLFOCLF_00372	1.15e-57	xseB	3.1.11.6	-	L	ko:K03602	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
CLLFOCLF_00373	7.97e-280	xseA	3.1.11.6	-	L	ko:K03601	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
CLLFOCLF_00374	3.79e-191	folD	1.5.1.5, 3.5.4.9	-	F	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CLLFOCLF_00375	3.71e-91	nusB	-	-	K	ko:K03625	-	ko00000,ko03009,ko03021	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CLLFOCLF_00376	9.27e-93	WQ51_04310	-	-	S	ko:K10947	-	ko00000,ko03000	Asp23 family, cell envelope-related function
CLLFOCLF_00377	2.02e-146	-	-	-	J	-	-	-	2'-5' RNA ligase superfamily
CLLFOCLF_00378	4.3e-256	pepP	3.4.11.9, 3.4.13.9	-	E	ko:K01262,ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
CLLFOCLF_00379	2.13e-167	-	-	-	S	ko:K06997	-	ko00000	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CLLFOCLF_00380	5.93e-60	rpmA	-	-	J	ko:K02899	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL27 family
CLLFOCLF_00381	4.89e-70	ysxB	-	-	J	ko:K07584	-	ko00000	Cysteine protease Prp
CLLFOCLF_00382	2.68e-67	rplU	-	-	J	ko:K02888	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to 23S rRNA in the presence of protein L20
CLLFOCLF_00383	6.36e-75	-	-	-	-	-	-	-	-
CLLFOCLF_00384	2.71e-51	-	-	-	S	-	-	-	Protein of unknown function (DUF1797)
CLLFOCLF_00385	9.33e-229	mprF	-	-	I	ko:K07027	-	ko00000,ko02000	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CLLFOCLF_00386	1.13e-252	cpoA	2.4.1.208	GT4	M	ko:K13677,ko:K13678	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
CLLFOCLF_00387	8.93e-291	pimB	2.4.1.337	GT4	M	ko:K19002	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
CLLFOCLF_00388	0.0	ptsI	2.7.3.9	-	G	ko:K08483	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLLFOCLF_00389	3.69e-54	ptsH	-	-	G	ko:K11189	-	ko00000,ko02000	phosphocarrier protein HPR
CLLFOCLF_00390	5.62e-37	-	-	-	-	-	-	-	-
CLLFOCLF_00391	0.0	clpE	-	-	O	ko:K03697,ko:K04086	-	ko00000,ko03110	Belongs to the ClpA ClpB family
CLLFOCLF_00392	1.56e-130	-	-	-	S	-	-	-	Pfam:DUF3816
CLLFOCLF_00393	5.49e-182	-	-	-	G	-	-	-	MucBP domain
CLLFOCLF_00394	1.17e-147	-	-	-	-	-	-	-	-
CLLFOCLF_00395	1.27e-185	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_00397	6.47e-121	-	-	-	L	-	-	-	Integrase
CLLFOCLF_00400	1.29e-184	soj	-	-	D	-	-	-	CobQ CobB MinD ParA nucleotide binding domain protein
CLLFOCLF_00401	2.41e-44	-	-	-	-	-	-	-	-
CLLFOCLF_00402	3.1e-06	-	-	-	L	-	-	-	Resolvase, N terminal domain
CLLFOCLF_00403	9.11e-54	-	2.1.1.72	-	L	ko:K07316	-	ko00000,ko01000,ko02048	DNA methylase
CLLFOCLF_00404	0.0	sthIR	3.1.21.5	-	L	ko:K01156	-	ko00000,ko01000,ko02048	Type III restriction enzyme, res subunit
CLLFOCLF_00405	1.41e-67	-	-	-	-	-	-	-	-
CLLFOCLF_00407	2.56e-17	-	-	-	-	-	-	-	-
CLLFOCLF_00409	0.0	copB	3.6.3.3, 3.6.3.4, 3.6.3.5	-	P	ko:K01533,ko:K01534	-	ko00000,ko01000	P-type ATPase
CLLFOCLF_00410	7.39e-98	atkY	-	-	K	ko:K02171	ko01501,map01501	ko00000,ko00001,ko00002,ko01504,ko03000	Transcriptional regulator
CLLFOCLF_00411	2.9e-227	rihA	-	-	F	ko:K01250	-	ko00000,ko01000	Inosine-uridine preferring nucleoside hydrolase
CLLFOCLF_00412	3.01e-145	-	-	-	T	ko:K10716	-	ko00000,ko02000	Ion transport 2 domain protein
CLLFOCLF_00413	0.0	yfhO	-	-	S	-	-	-	Bacterial membrane protein YfhO
CLLFOCLF_00414	3.65e-273	-	-	-	G	-	-	-	Transporter, major facilitator family protein
CLLFOCLF_00415	2.88e-141	yvrI	-	-	K	ko:K03091,ko:K03093	-	ko00000,ko03021	sigma factor activity
CLLFOCLF_00416	4.2e-79	yuxO	-	-	Q	-	-	-	Thioesterase superfamily
CLLFOCLF_00417	1.16e-199	menB	4.1.3.36	-	H	ko:K01661	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CLLFOCLF_00418	1.38e-42	feoB	-	-	P	ko:K04759	-	ko00000,ko02000	transporter of a GTP-driven Fe(2 ) uptake system
CLLFOCLF_00419	2.84e-42	feoA	-	-	P	ko:K04758	-	ko00000,ko02000	FeoA domain
CLLFOCLF_00420	1.56e-184	sufC	-	-	O	ko:K09013	-	ko00000,ko02000	FeS assembly ATPase SufC
CLLFOCLF_00421	1.66e-305	sufD	-	-	O	ko:K07033,ko:K09015	-	ko00000	FeS assembly protein SufD
CLLFOCLF_00422	7.46e-298	sufS	2.8.1.7, 4.4.1.16	-	E	ko:K11717	ko00450,ko01100,map00450,map01100	ko00000,ko00001,ko01000	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLLFOCLF_00423	1.24e-103	nifU	-	-	C	ko:K04488	-	ko00000	SUF system FeS assembly protein, NifU family
CLLFOCLF_00424	0.0	sufB	-	-	O	ko:K07033,ko:K09014	-	ko00000	assembly protein SufB
CLLFOCLF_00425	1.18e-76	-	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
CLLFOCLF_00426	1.83e-203	-	-	-	K	ko:K20480	ko02024,map02024	ko00000,ko00001,ko03000	Helix-turn-helix
CLLFOCLF_00427	2.05e-147	nreC	-	-	K	ko:K07696	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	PFAM regulatory protein LuxR
CLLFOCLF_00429	5.83e-51	-	-	-	S	-	-	-	Cytochrome B5
CLLFOCLF_00430	5.7e-199	yitU	3.1.3.104	-	S	ko:K21064	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
CLLFOCLF_00431	0.0	rsmF	-	-	J	-	-	-	NOL1 NOP2 sun family protein
CLLFOCLF_00432	1.54e-191	-	-	-	O	-	-	-	Band 7 protein
CLLFOCLF_00433	7.5e-56	lytS	2.7.13.3	-	T	ko:K07704	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	LytS YhcK-type transmembrane receptor domain protein
CLLFOCLF_00434	1.22e-222	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLLFOCLF_00435	7.04e-215	scrK	2.7.1.4	-	GK	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	ROK family
CLLFOCLF_00436	3.18e-237	galR	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding protein-like domain
CLLFOCLF_00437	0.0	melA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
CLLFOCLF_00438	6.66e-48	-	-	-	L	-	-	-	Transposase
CLLFOCLF_00439	4.26e-109	-	-	-	-	-	-	-	-
CLLFOCLF_00440	4.39e-213	int7	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLLFOCLF_00441	2.31e-27	-	-	-	S	-	-	-	DNA binding domain, excisionase family
CLLFOCLF_00444	3.18e-160	-	-	-	-	-	-	-	-
CLLFOCLF_00445	3.28e-15	-	-	-	S	-	-	-	Helix-turn-helix domain
CLLFOCLF_00447	5.22e-101	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
CLLFOCLF_00451	4.25e-153	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
CLLFOCLF_00452	8.15e-136	-	-	-	L	-	-	-	Helix-turn-helix domain
CLLFOCLF_00453	1.45e-112	-	-	-	-	-	-	-	-
CLLFOCLF_00454	6.4e-97	-	-	-	V	ko:K07451	-	ko00000,ko01000,ko02048	HNH nucleases
CLLFOCLF_00455	3.28e-128	-	-	-	-	-	-	-	-
CLLFOCLF_00456	9.68e-292	-	-	-	KL	-	-	-	DNA methylase
CLLFOCLF_00457	4.19e-146	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
CLLFOCLF_00458	8.38e-42	-	-	-	S	-	-	-	Domain of unknown function (DUF5049)
CLLFOCLF_00459	0.0	-	-	-	S	-	-	-	overlaps another CDS with the same product name
CLLFOCLF_00460	2.37e-310	-	-	-	S	-	-	-	Phage portal protein
CLLFOCLF_00461	4.66e-156	-	3.4.21.92	-	OU	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S14 family
CLLFOCLF_00462	1.29e-281	-	-	-	S	-	-	-	Phage capsid family
CLLFOCLF_00463	2.17e-57	-	-	-	S	-	-	-	Phage gp6-like head-tail connector protein
CLLFOCLF_00464	1.29e-88	-	-	-	S	-	-	-	Phage head-tail joining protein
CLLFOCLF_00465	5.95e-92	-	-	-	S	-	-	-	Bacteriophage holin family
CLLFOCLF_00466	1.29e-26	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
CLLFOCLF_00467	9.33e-89	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
CLLFOCLF_00468	1.03e-37	-	-	-	-	-	-	-	-
CLLFOCLF_00469	0.0	-	-	-	L	-	-	-	Recombinase zinc beta ribbon domain
CLLFOCLF_00470	0.0	-	-	-	L	-	-	-	Recombinase
CLLFOCLF_00471	9.37e-163	-	-	-	V	ko:K11050	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLLFOCLF_00472	2.68e-162	cylB	-	-	V	ko:K11051	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC-2 type transporter
CLLFOCLF_00473	8.37e-87	-	-	-	K	-	-	-	LytTr DNA-binding domain
CLLFOCLF_00474	1.87e-52	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
CLLFOCLF_00476	0.0	hsdR	3.1.21.3	-	V	ko:K01153	-	ko00000,ko01000,ko02048	Subunit R is required for both nuclease and ATPase activities, but not for modification
CLLFOCLF_00477	3.38e-57	hsdS	3.1.21.3	-	V	ko:K01154	-	ko00000,ko01000,ko02048	type I restriction modification DNA specificity domain
CLLFOCLF_00478	1.27e-223	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLLFOCLF_00479	1.04e-46	-	3.1.21.3	-	V	ko:K01154	-	ko00000,ko01000,ko02048	Type I restriction modification DNA specificity domain
CLLFOCLF_00480	9.1e-39	-	3.1.21.3	-	V	ko:K01154	-	ko00000,ko01000,ko02048	Type I restriction modification DNA specificity domain
CLLFOCLF_00481	0.0	hsdM	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	type I restriction-modification system
CLLFOCLF_00482	4.26e-32	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
CLLFOCLF_00483	4.52e-137	-	-	-	F	-	-	-	helicase superfamily c-terminal domain
CLLFOCLF_00486	6.8e-32	-	-	-	-	-	-	-	-
CLLFOCLF_00487	3.92e-38	-	-	-	-	-	-	-	-
CLLFOCLF_00488	4.28e-255	-	-	-	L	-	-	-	Protein of unknown function (DUF2800)
CLLFOCLF_00489	2.16e-122	-	-	-	S	-	-	-	Protein of unknown function (DUF2815)
CLLFOCLF_00490	1.41e-54	-	2.7.7.7	-	L	ko:K02334	-	ko00000,ko01000	DNA polymerase
CLLFOCLF_00491	1.06e-92	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
CLLFOCLF_00492	1.81e-119	-	-	-	S	ko:K06919	-	ko00000	Phage plasmid primase, P4
CLLFOCLF_00493	2.94e-60	-	-	-	S	-	-	-	VRR_NUC
CLLFOCLF_00494	1.33e-179	nfrA	1.5.1.38	-	C	ko:K19285	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	nitroreductase
CLLFOCLF_00495	2.07e-285	-	-	-	G	-	-	-	Glycosyl hydrolases family 8
CLLFOCLF_00496	2.77e-307	-	-	-	M	-	-	-	Glycosyl transferase
CLLFOCLF_00498	5.82e-191	-	-	-	-	-	-	-	-
CLLFOCLF_00499	6.09e-162	phoU	-	-	P	ko:K02039	-	ko00000	Plays a role in the regulation of phosphate uptake
CLLFOCLF_00500	1.28e-176	pstB	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
CLLFOCLF_00501	2.77e-195	pstC	-	-	P	ko:K02037	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	probably responsible for the translocation of the substrate across the membrane
CLLFOCLF_00502	1.71e-205	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
CLLFOCLF_00503	8.8e-73	dedA	-	-	S	ko:K03975	-	ko00000	SNARE-like domain protein
CLLFOCLF_00504	6.92e-130	-	-	-	S	-	-	-	Protein of unknown function (DUF1461)
CLLFOCLF_00505	6.76e-170	nagD	3.1.3.41	-	G	ko:K01101	ko00627,ko01120,map00627,map01120	ko00000,ko00001,ko01000	Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
CLLFOCLF_00506	2.66e-120	yutD	-	-	S	-	-	-	Protein of unknown function (DUF1027)
CLLFOCLF_00507	1.21e-143	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
CLLFOCLF_00508	4.36e-283	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CLLFOCLF_00509	9.39e-192	ytxK	2.1.1.72	-	L	ko:K00571	-	ko00000,ko01000,ko02048	N-6 DNA Methylase
CLLFOCLF_00510	5.18e-89	-	-	-	-	ko:K02248	-	ko00000,ko00002,ko02044	-
CLLFOCLF_00511	1.96e-55	-	-	-	-	-	-	-	-
CLLFOCLF_00512	2.38e-99	-	-	-	NU	ko:K02246	-	ko00000,ko00002,ko02044	general secretion pathway protein
CLLFOCLF_00513	6.31e-62	comGC	-	-	U	ko:K02245	-	ko00000,ko00002,ko02044	competence protein ComGC
CLLFOCLF_00514	2.13e-233	comGB	-	-	NU	ko:K02244	-	ko00000,ko00002,ko02044	type II secretion system
CLLFOCLF_00515	9.82e-234	comGA	-	-	NU	ko:K02243	-	ko00000,ko00002,ko02044	Type II IV secretion system protein
CLLFOCLF_00516	7.07e-168	yebC	-	-	K	-	-	-	Transcriptional regulatory protein
CLLFOCLF_00517	6.37e-176	-	-	-	-	-	-	-	-
CLLFOCLF_00518	7.72e-232	ccpA	-	-	K	ko:K02529	-	ko00000,ko03000	catabolite control protein A
CLLFOCLF_00519	1.72e-266	pepQ	3.4.13.9	-	E	ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
CLLFOCLF_00520	2.04e-72	-	-	-	-	-	-	-	-
CLLFOCLF_00521	8.88e-71	ytxG	-	-	S	-	-	-	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
CLLFOCLF_00522	7.58e-189	ykuT	-	-	M	ko:K16052,ko:K22044	-	ko00000,ko02000	mechanosensitive ion channel
CLLFOCLF_00523	1.83e-196	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
CLLFOCLF_00524	8.55e-99	ykuL	-	-	S	-	-	-	(CBS) domain
CLLFOCLF_00525	6.71e-120	-	-	-	S	ko:K07095	-	ko00000	Phosphoesterase
CLLFOCLF_00526	4.22e-136	rdgB	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CLLFOCLF_00527	6.89e-189	murI	3.6.1.66, 5.1.1.3	-	M	ko:K01776,ko:K02428	ko00230,ko00471,ko01100,map00230,map00471,map01100	ko00000,ko00001,ko01000,ko01011	Provides the (R)-glutamate required for cell wall biosynthesis
CLLFOCLF_00528	1.74e-125	yslB	-	-	S	-	-	-	Protein of unknown function (DUF2507)
CLLFOCLF_00529	2.86e-72	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
CLLFOCLF_00530	0.0	mutS2	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
CLLFOCLF_00531	7.15e-122	cvpA	-	-	S	-	-	-	Colicin V production protein
CLLFOCLF_00532	3.75e-63	yrzB	-	-	S	-	-	-	Belongs to the UPF0473 family
CLLFOCLF_00533	3.62e-100	yrrK	-	-	J	ko:K07447	-	ko00000,ko01000	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CLLFOCLF_00534	8.03e-58	yrzL	-	-	S	-	-	-	Belongs to the UPF0297 family
CLLFOCLF_00535	0.0	alaS	6.1.1.7	-	J	ko:K01872	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CLLFOCLF_00536	0.0	cshB	3.6.4.13	-	JKL	ko:K05592,ko:K18692	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
CLLFOCLF_00537	2.15e-234	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHHA1 domain protein
CLLFOCLF_00538	1.44e-59	yajC	-	-	U	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
CLLFOCLF_00539	2.41e-239	tgt	2.4.2.29	-	F	ko:K00773	-	ko00000,ko01000,ko03016	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
CLLFOCLF_00540	1.36e-242	ruvB	3.6.4.12	-	L	ko:K03551	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
CLLFOCLF_00541	4.34e-131	ruvA	3.6.4.12	-	L	ko:K03550	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
CLLFOCLF_00542	0.0	mutL	-	-	L	ko:K03572	ko03430,map03430	ko00000,ko00001,ko03400	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CLLFOCLF_00543	0.0	mutS	-	-	L	ko:K03555	ko03430,map03430	ko00000,ko00001,ko03400	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CLLFOCLF_00544	2.29e-276	rny	-	-	S	ko:K18682	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Endoribonuclease that initiates mRNA decay
CLLFOCLF_00545	5.17e-250	recA	-	-	L	ko:K03553	ko03440,map03440	ko00000,ko00001,ko00002,ko03400	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CLLFOCLF_00546	2.18e-287	cinA	3.5.1.42	-	S	ko:K03742,ko:K03743	ko00760,map00760	ko00000,ko00001,ko01000	Belongs to the CinA family
CLLFOCLF_00547	1.16e-133	pgsA	2.7.8.5	-	I	ko:K00995	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CLLFOCLF_00548	3.1e-192	-	-	-	S	-	-	-	Helix-turn-helix domain
CLLFOCLF_00549	3.66e-315	ymfH	-	-	S	-	-	-	Peptidase M16
CLLFOCLF_00550	2.28e-289	ymfF	-	-	S	-	-	-	Peptidase M16 inactive domain protein
CLLFOCLF_00551	5.91e-151	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_00552	4.45e-141	yecS_2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
CLLFOCLF_00553	1.69e-120	mreD	-	-	M	ko:K03571	-	ko00000,ko03036	rod shape-determining protein MreD
CLLFOCLF_00554	3.82e-195	mreC	-	-	M	ko:K03570	-	ko00000,ko03036	Involved in formation and maintenance of cell shape
CLLFOCLF_00555	8.33e-230	mreB	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	cell shape determining protein MreB
CLLFOCLF_00556	4.2e-157	radC	-	-	L	ko:K03630	-	ko00000	DNA repair protein
CLLFOCLF_00557	9.28e-307	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
CLLFOCLF_00558	1.81e-294	yumB	1.6.99.3	-	C	ko:K03885	ko00190,map00190	ko00000,ko00001,ko01000	NADH dehydrogenase
CLLFOCLF_00559	0.0	cydD	-	-	CO	ko:K16012	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CLLFOCLF_00560	0.0	cydC	-	-	CO	ko:K16013	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydD
CLLFOCLF_00561	5.45e-233	cydB	1.10.3.14	-	C	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	Cytochrome d ubiquinol oxidase subunit II
CLLFOCLF_00562	0.0	cydA	1.10.3.14	-	C	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	ubiquinol oxidase
CLLFOCLF_00563	0.0	valS	6.1.1.9	-	J	ko:K01873	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
CLLFOCLF_00564	2.37e-291	thiI	2.8.1.4	-	H	ko:K03151	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CLLFOCLF_00565	7.1e-274	iscS2	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
CLLFOCLF_00566	0.0	ezrA	-	-	D	ko:K06286	-	ko00000,ko03036	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
CLLFOCLF_00567	5.96e-139	rpsD	-	-	J	ko:K02986	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CLLFOCLF_00576	1.12e-167	fabI	1.3.1.10, 1.3.1.9	-	I	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl- acyl-carrier-protein reductase NADH
CLLFOCLF_00577	3.64e-175	accA	2.1.3.15, 6.4.1.2	-	I	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	alpha subunit
CLLFOCLF_00578	1.45e-184	accD	2.1.3.15, 6.4.1.2	-	I	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CLLFOCLF_00579	0.0	accC	6.3.4.14, 6.4.1.2	-	I	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Acetyl-CoA carboxylase biotin carboxylase subunit
CLLFOCLF_00580	2.29e-97	fabZ	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
CLLFOCLF_00581	4.19e-96	accB	-	-	I	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
CLLFOCLF_00582	2.73e-283	fabF	2.3.1.179	-	I	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
CLLFOCLF_00583	8.85e-160	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	reductase
CLLFOCLF_00584	2.72e-194	fabD	2.3.1.39	-	I	ko:K00645,ko:K15327,ko:K15329	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004,ko01008	Malonyl CoA-acyl carrier protein transacylase
CLLFOCLF_00585	1.99e-44	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLLFOCLF_00586	1.46e-214	fabH	2.3.1.180	-	I	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLLFOCLF_00587	3.21e-99	-	-	-	K	-	-	-	Transcriptional regulator, MarR family
CLLFOCLF_00588	1.39e-91	fabZ	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
CLLFOCLF_00590	3.42e-258	xerS	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLLFOCLF_00591	0.0	sacB	2.4.1.10, 2.4.1.9	GH68	M	ko:K00692,ko:K20811	ko00500,ko01100,ko02020,map00500,map01100,map02020	ko00000,ko00001,ko01000,ko01003	Levansucrase/Invertase
CLLFOCLF_00592	7.53e-20	sacB	2.4.1.10, 2.4.1.9	GH68	M	ko:K00692,ko:K20811	ko00500,ko01100,ko02020,map00500,map01100,map02020	ko00000,ko00001,ko01000,ko01003	Levansucrase/Invertase
CLLFOCLF_00593	1.15e-200	rssA	-	-	S	-	-	-	Phospholipase, patatin family
CLLFOCLF_00594	9.45e-152	-	-	-	L	-	-	-	Integrase
CLLFOCLF_00595	1.88e-196	-	-	-	EG	-	-	-	EamA-like transporter family
CLLFOCLF_00596	3.85e-167	narI	1.7.5.1	-	C	ko:K00374	ko00910,ko01120,ko02020,map00910,map01120,map02020	ko00000,ko00001,ko00002,ko01000	Nitrate reductase
CLLFOCLF_00597	2.57e-70	narJ	-	-	C	ko:K00373	ko02020,map02020	ko00000,ko00001	nitrate reductase molybdenum cofactor assembly chaperone
CLLFOCLF_00598	9.62e-45	narJ	-	-	C	ko:K00373	ko02020,map02020	ko00000,ko00001	nitrate reductase molybdenum cofactor assembly chaperone
CLLFOCLF_00599	0.0	narH	1.7.5.1	-	C	ko:K00371	ko00910,ko01120,ko02020,map00910,map01120,map02020	ko00000,ko00001,ko00002,ko01000	4Fe-4S dicluster domain
CLLFOCLF_00600	0.0	narZ	1.7.5.1	-	C	ko:K00370	ko00910,ko01120,ko02020,map00910,map01120,map02020	ko00000,ko00001,ko00002,ko01000	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CLLFOCLF_00601	1.65e-107	moaB	2.7.7.75	-	H	ko:K03638	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko01000	May be involved in the biosynthesis of molybdopterin
CLLFOCLF_00602	3.34e-286	moeA	2.10.1.1	-	H	ko:K03750	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko01000	MoeA N-terminal region (domain I and II)
CLLFOCLF_00603	2.25e-97	mobB	-	-	H	ko:K03753	-	ko00000	molybdopterin-guanine dinucleotide biosynthesis protein
CLLFOCLF_00604	4.55e-124	mobA	2.7.7.77	-	H	ko:K03752	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko01000	Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor
CLLFOCLF_00605	1.61e-291	-	-	-	P	-	-	-	Chloride transporter, ClC family
CLLFOCLF_00606	7.39e-184	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902
CLLFOCLF_00607	0.0	pdhD	1.8.1.4	-	C	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	Dehydrogenase
CLLFOCLF_00608	6.1e-311	pdhC	2.3.1.12	-	C	ko:K00627	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
CLLFOCLF_00609	1.34e-231	pdhB	1.2.4.1	-	C	ko:K00162	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	br01601,ko00000,ko00001,ko00002,ko01000	Transketolase, C-terminal domain protein
CLLFOCLF_00610	2.34e-265	pdhA	1.2.4.1	-	C	ko:K00161	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	br01601,ko00000,ko00001,ko00002,ko01000	Dehydrogenase E1 component
CLLFOCLF_00611	2.78e-132	def	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
CLLFOCLF_00612	1.74e-101	-	-	-	-	-	-	-	-
CLLFOCLF_00613	9.99e-44	ykzG	-	-	S	-	-	-	Belongs to the UPF0356 family
CLLFOCLF_00614	4.14e-230	-	-	-	I	-	-	-	Diacylglycerol kinase catalytic
CLLFOCLF_00615	8.83e-39	-	-	-	-	-	-	-	-
CLLFOCLF_00616	1.18e-215	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC P60 family protein
CLLFOCLF_00618	2.15e-75	-	-	-	-	-	-	-	-
CLLFOCLF_00619	1.25e-263	glxK	2.7.1.165	-	G	ko:K00865	ko00260,ko00561,ko00630,ko01100,ko01120,ko01130,map00260,map00561,map00630,map01100,map01120,map01130	ko00000,ko00001,ko01000	Belongs to the glycerate kinase type-1 family
CLLFOCLF_00620	1.1e-279	yojA	-	-	EG	ko:K03299	-	ko00000,ko02000	GntP family permease
CLLFOCLF_00621	5.77e-104	-	-	-	KT	ko:K02647	-	ko00000,ko03000	Putative sugar diacid recognition
CLLFOCLF_00622	4.47e-255	asd	1.2.1.11	-	E	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CLLFOCLF_00623	5.91e-279	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLLFOCLF_00624	1.82e-180	dapB	1.17.1.8	-	E	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
CLLFOCLF_00625	6.29e-221	dapA	4.3.3.7	-	E	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLLFOCLF_00626	2.32e-283	hipO	3.5.1.47	-	E	ko:K05823	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
CLLFOCLF_00627	2.18e-110	dapH	2.3.1.117, 2.3.1.89	-	E	ko:K00674,ko:K05822	ko00300,ko01100,ko01110,ko01120,ko01230,map00300,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
CLLFOCLF_00628	1.33e-310	lysA	4.1.1.20	-	E	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
CLLFOCLF_00629	0.0	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
CLLFOCLF_00630	2.6e-233	dapF	5.1.1.7	-	E	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CLLFOCLF_00631	1.66e-220	prs2	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CLLFOCLF_00632	0.0	recD2	3.1.11.5	-	L	ko:K03581	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
CLLFOCLF_00633	4.96e-21	-	-	-	S	-	-	-	repeat protein
CLLFOCLF_00634	5.71e-159	pgm6	-	-	G	-	-	-	phosphoglycerate mutase
CLLFOCLF_00635	6.17e-286	mnmA	2.8.1.13	-	J	ko:K00566	ko04122,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
CLLFOCLF_00636	5.58e-76	XK27_04120	-	-	S	-	-	-	Putative amino acid metabolism
CLLFOCLF_00637	1.1e-278	iscS	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
CLLFOCLF_00638	1.62e-160	mtnN	3.2.2.9	-	E	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CLLFOCLF_00639	1.19e-25	-	-	-	-	-	-	-	-
CLLFOCLF_00640	2.48e-129	nudF	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	ADP-ribose pyrophosphatase
CLLFOCLF_00641	5.69e-44	cspB	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock protein
CLLFOCLF_00642	0.0	ileS	6.1.1.5	-	J	ko:K01870	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CLLFOCLF_00643	7.24e-100	divIVA	-	-	D	ko:K04074	-	ko00000,ko03036	DivIVA domain protein
CLLFOCLF_00644	2.5e-188	ylmH	-	-	S	-	-	-	S4 domain protein
CLLFOCLF_00645	1.11e-54	ylmG	-	-	S	ko:K02221	-	ko00000,ko02044	YGGT family
CLLFOCLF_00646	1.11e-92	sepF	-	-	D	ko:K09772	-	ko00000,ko03036	Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
CLLFOCLF_00647	4.88e-283	ftsZ	-	-	D	ko:K03531	ko04112,map04112	ko00000,ko00001,ko02048,ko03036,ko04812	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CLLFOCLF_00648	0.0	ftsA	-	-	D	ko:K03590	ko04112,map04112	ko00000,ko00001,ko03036,ko04812	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
CLLFOCLF_00649	3.33e-183	divIB	-	-	D	ko:K03589	ko04112,map04112	ko00000,ko00001,ko03036	Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
CLLFOCLF_00650	1.98e-258	murG	2.4.1.227	GT28	M	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CLLFOCLF_00651	0.0	murD	6.3.2.9	-	M	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CLLFOCLF_00652	7.73e-230	mraY	2.7.8.13	-	M	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CLLFOCLF_00653	0.0	pbpX	-	-	M	ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
CLLFOCLF_00654	9.94e-73	ftsL	-	-	D	-	-	-	Cell division protein FtsL
CLLFOCLF_00655	4.95e-219	rsmH	2.1.1.199	-	J	ko:K03438	-	ko00000,ko01000,ko03009	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
CLLFOCLF_00656	1.5e-101	mraZ	-	-	K	ko:K03925	-	ko00000	Belongs to the MraZ family
CLLFOCLF_00657	2.32e-75	-	-	-	-	-	-	-	-
CLLFOCLF_00658	4.47e-16	-	-	-	S	-	-	-	Protein of unknown function (DUF4044)
CLLFOCLF_00659	0.0	ftsK	-	-	D	ko:K03466	-	ko00000,ko03036	Belongs to the FtsK SpoIIIE SftA family
CLLFOCLF_00660	1.53e-123	cspR	2.1.1.207	-	J	ko:K03216	-	ko00000,ko01000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
CLLFOCLF_00661	6.7e-205	rrmA	2.1.1.187	-	H	ko:K00563,ko:K10947	-	ko00000,ko01000,ko03000,ko03009	Methyltransferase
CLLFOCLF_00662	2.67e-251	pgl	3.1.1.31	-	G	ko:K07404	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Lactonase, 7-bladed beta-propeller
CLLFOCLF_00664	1.45e-225	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLLFOCLF_00665	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLLFOCLF_00666	8.03e-81	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLLFOCLF_00667	3.05e-91	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
CLLFOCLF_00668	1.57e-127	-	-	-	S	-	-	-	Protein of unknown function (DUF2815)
CLLFOCLF_00669	1.48e-269	-	-	-	L	-	-	-	Protein of unknown function (DUF2800)
CLLFOCLF_00670	2.17e-54	-	-	-	-	-	-	-	-
CLLFOCLF_00671	5.78e-35	-	-	-	-	-	-	-	-
CLLFOCLF_00672	5.68e-95	-	-	-	K	-	-	-	DNA-templated transcription, initiation
CLLFOCLF_00674	5.03e-161	-	-	-	F	-	-	-	helicase superfamily c-terminal domain
CLLFOCLF_00675	2.65e-32	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
CLLFOCLF_00676	9.64e-92	-	-	-	V	-	-	-	site-specific DNA-methyltransferase (adenine-specific) activity
CLLFOCLF_00677	4.31e-180	-	-	-	L	-	-	-	Bacterial dnaA protein
CLLFOCLF_00678	3.28e-222	-	-	-	L	-	-	-	Integrase core domain
CLLFOCLF_00679	2.51e-107	-	-	-	L	-	-	-	site-specific DNA-methyltransferase (adenine-specific) activity
CLLFOCLF_00680	0.0	-	-	-	L	-	-	-	Type III restriction enzyme, res subunit
CLLFOCLF_00681	0.0	-	-	-	S	-	-	-	Protein of unknown function DUF262
CLLFOCLF_00683	7.25e-31	-	-	-	EGP	ko:K08368	-	ko00000,ko02000	Sugar (and other) transporter
CLLFOCLF_00684	1.13e-70	araP	-	-	U	-	-	-	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
CLLFOCLF_00685	1.63e-233	-	-	-	S	-	-	-	Domain of unknown function (DUF389)
CLLFOCLF_00686	1.6e-110	-	-	-	L	ko:K06400	-	ko00000	Recombinase
CLLFOCLF_00687	5.15e-94	-	-	-	K	-	-	-	DNA binding
CLLFOCLF_00688	6.86e-150	-	-	-	L	-	-	-	helicase activity
CLLFOCLF_00689	1.76e-260	-	-	-	L	-	-	-	helicase activity
CLLFOCLF_00691	1.03e-72	arsC	1.20.4.1	-	T	ko:K03741	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLLFOCLF_00692	8.93e-210	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLLFOCLF_00693	0.0	cadA	3.6.3.3, 3.6.3.5	-	P	ko:K01534	-	ko00000,ko01000	E1-E2 ATPase
CLLFOCLF_00694	1.35e-46	-	-	-	C	-	-	-	Heavy-metal-associated domain
CLLFOCLF_00695	5.23e-123	dpsB	-	-	P	-	-	-	Belongs to the Dps family
CLLFOCLF_00696	4.13e-147	fnr	-	-	K	ko:K21562	-	ko00000,ko03000	Transcriptional regulator, Crp Fnr family
CLLFOCLF_00697	2.1e-145	ung2	-	-	L	-	-	-	Uracil-DNA glycosylase
CLLFOCLF_00698	6.94e-80	-	5.1.1.13	-	M	ko:K01779	ko00250,ko01054,map00250,map01054	ko00000,ko00001,ko01000	Asp/Glu/Hydantoin racemase
CLLFOCLF_00699	1.19e-31	-	5.1.1.13	-	M	ko:K01779	ko00250,ko01054,map00250,map01054	ko00000,ko00001,ko01000	Asp/Glu/Hydantoin racemase
CLLFOCLF_00700	8.59e-86	-	-	-	L	ko:K06400	-	ko00000	Recombinase
CLLFOCLF_00701	8.29e-83	-	-	-	L	ko:K06400	-	ko00000	Recombinase
CLLFOCLF_00702	2.05e-105	-	-	-	L	-	-	-	Recombinase
CLLFOCLF_00703	2.87e-32	-	-	-	L	-	-	-	Recombinase zinc beta ribbon domain
CLLFOCLF_00704	9.73e-85	-	-	-	L	-	-	-	Recombinase zinc beta ribbon domain
CLLFOCLF_00705	1.13e-26	-	-	-	-	-	-	-	-
CLLFOCLF_00706	1.89e-38	-	-	-	S	-	-	-	Bacteriophage holin family
CLLFOCLF_00707	2.78e-71	-	-	-	S	-	-	-	Phage head-tail joining protein
CLLFOCLF_00708	1.16e-52	-	-	-	S	-	-	-	Phage gp6-like head-tail connector protein
CLLFOCLF_00709	8.27e-235	-	-	-	S	-	-	-	Phage capsid family
CLLFOCLF_00710	1.27e-115	tpx	1.11.1.15	-	O	ko:K11065	-	ko00000,ko01000	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CLLFOCLF_00711	8.85e-164	-	-	-	F	-	-	-	NUDIX domain
CLLFOCLF_00712	0.0	nadC2	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CLLFOCLF_00713	3.18e-133	pncA	-	-	Q	-	-	-	Isochorismatase family
CLLFOCLF_00714	3.4e-145	frnE	5.3.4.1	-	Q	ko:K01829	-	ko00000,ko01000	DSBA-like thioredoxin domain
CLLFOCLF_00715	1.22e-100	-	-	-	I	-	-	-	alpha/beta hydrolase fold
CLLFOCLF_00716	2.05e-27	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLLFOCLF_00717	8.5e-41	-	-	-	S	-	-	-	Phage derived protein Gp49-like (DUF891)
CLLFOCLF_00719	1.37e-64	-	-	-	S	-	-	-	Lipopolysaccharide assembly protein A domain
CLLFOCLF_00720	8.29e-194	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
CLLFOCLF_00721	1.38e-117	ntd	2.4.2.6	-	F	ko:K08728	ko00240,map00240	ko00000,ko00001,ko01000	Nucleoside
CLLFOCLF_00722	1.15e-25	-	-	-	-	-	-	-	-
CLLFOCLF_00723	8.51e-209	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
CLLFOCLF_00724	8.42e-149	-	-	-	S	-	-	-	Protein of unknown function (DUF421)
CLLFOCLF_00725	3.91e-95	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
CLLFOCLF_00726	8.32e-56	-	-	-	S	ko:K09790	-	ko00000	Protein of unknown function (DUF454)
CLLFOCLF_00727	0.0	-	-	-	I	-	-	-	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLLFOCLF_00728	8.11e-201	endA	-	-	V	ko:K15051	-	ko00000	DNA/RNA non-specific endonuclease
CLLFOCLF_00729	0.0	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
CLLFOCLF_00731	0.0	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CLLFOCLF_00732	7.36e-291	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
CLLFOCLF_00733	3.25e-155	-	-	-	S	-	-	-	SNARE associated Golgi protein
CLLFOCLF_00734	0.0	uvrA2	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	excinuclease ABC, A subunit
CLLFOCLF_00735	5.16e-72	crcB	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLLFOCLF_00736	4.18e-75	crcB	-	-	D	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLLFOCLF_00737	2.79e-89	-	-	-	E	-	-	-	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CLLFOCLF_00738	1.82e-186	-	-	-	S	-	-	-	DUF218 domain
CLLFOCLF_00739	0.0	ubiB	-	-	S	ko:K03688	-	ko00000	ABC1 family
CLLFOCLF_00740	2.2e-315	yhdP	-	-	S	-	-	-	Transporter associated domain
CLLFOCLF_00741	3.97e-97	atkY	-	-	K	ko:K02171	ko01501,map01501	ko00000,ko00001,ko00002,ko01504,ko03000	Copper transport repressor CopY TcrY
CLLFOCLF_00742	2.65e-305	-	-	-	U	-	-	-	Belongs to the major facilitator superfamily
CLLFOCLF_00743	3.18e-96	-	-	-	S	-	-	-	UPF0756 membrane protein
CLLFOCLF_00744	5.42e-105	-	-	-	C	-	-	-	Flavodoxin
CLLFOCLF_00745	9.48e-205	rlrB	-	-	K	-	-	-	LysR substrate binding domain protein
CLLFOCLF_00746	4.38e-211	yvgN	-	-	C	-	-	-	Aldo keto reductase
CLLFOCLF_00747	5.51e-90	XK27_08635	-	-	S	ko:K09157	-	ko00000	UPF0210 protein
CLLFOCLF_00748	1.39e-90	XK27_08635	-	-	S	ko:K09157	-	ko00000	UPF0210 protein
CLLFOCLF_00749	7.5e-122	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLLFOCLF_00750	2.93e-197	-	-	-	S	-	-	-	Alpha beta hydrolase
CLLFOCLF_00751	8.1e-200	gspA	-	-	M	-	-	-	family 8
CLLFOCLF_00752	9.78e-151	yagB	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLLFOCLF_00753	1.38e-119	-	-	-	-	-	-	-	-
CLLFOCLF_00754	9.88e-206	-	-	-	S	-	-	-	EDD domain protein, DegV family
CLLFOCLF_00755	0.0	FbpA	-	-	K	-	-	-	Fibronectin-binding protein
CLLFOCLF_00756	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
CLLFOCLF_00757	1.3e-263	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the CarA family
CLLFOCLF_00758	4.61e-221	rluD	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
CLLFOCLF_00759	1.26e-96	lspA	3.4.23.36	-	MU	ko:K03101	ko03060,map03060	ko00000,ko00001,ko01000,ko01002	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CLLFOCLF_00760	2.58e-85	esbA	-	-	S	-	-	-	Family of unknown function (DUF5322)
CLLFOCLF_00761	1.55e-91	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Ribonuclease HI
CLLFOCLF_00762	5.93e-283	ypsC	-	-	L	ko:K07444	-	ko00000,ko01000	Belongs to the methyltransferase superfamily
CLLFOCLF_00763	1.62e-106	-	-	-	F	ko:K03647	-	ko00000	Belongs to the NrdI family
CLLFOCLF_00764	3.25e-72	gpsB	-	-	D	-	-	-	Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
CLLFOCLF_00765	4.8e-130	ypsA	-	-	S	-	-	-	Belongs to the UPF0398 family
CLLFOCLF_00766	2.01e-152	recU	-	-	L	ko:K03700	-	ko00000,ko03400	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
CLLFOCLF_00767	0.0	ponA	2.4.1.129, 3.4.16.4	GT51	M	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein 1A
CLLFOCLF_00768	2.32e-206	-	-	-	EG	-	-	-	EamA-like transporter family
CLLFOCLF_00769	7.96e-158	dnaD	-	-	L	ko:K02086	-	ko00000	DnaD domain protein
CLLFOCLF_00770	4.69e-115	ypmB	-	-	S	-	-	-	Protein conserved in bacteria
CLLFOCLF_00771	0.0	dinG	3.6.4.12	-	L	ko:K03722	-	ko00000,ko01000,ko03400	helicase involved in DNA repair and perhaps also replication
CLLFOCLF_00772	2.86e-217	mvk	2.7.1.36	-	I	ko:K00869	ko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146	ko00000,ko00001,ko00002,ko01000	mevalonate kinase
CLLFOCLF_00773	8.5e-218	mvaD	4.1.1.33	-	I	ko:K01597	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	diphosphomevalonate decarboxylase
CLLFOCLF_00774	1.13e-271	mvaK2	2.7.4.2	-	I	ko:K00938	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	phosphomevalonate kinase
CLLFOCLF_00775	3.63e-247	fni	5.3.3.2	-	C	ko:K01823	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
CLLFOCLF_00776	2.78e-118	-	-	-	S	ko:K08996	-	ko00000	Protein of unknown function (DUF1440)
CLLFOCLF_00777	1.05e-45	-	-	-	-	-	-	-	-
CLLFOCLF_00778	8.66e-70	-	-	-	S	-	-	-	Mazg nucleotide pyrophosphohydrolase
CLLFOCLF_00779	3.75e-206	xth	3.1.11.2	-	L	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	exodeoxyribonuclease III
CLLFOCLF_00780	1.86e-14	-	-	-	-	-	-	-	-
CLLFOCLF_00781	3.18e-237	lacR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
CLLFOCLF_00782	0.0	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
CLLFOCLF_00783	0.0	lacZ	3.2.1.23	-	G	ko:K12308	ko00052,map00052	ko00000,ko00001,ko01000	-beta-galactosidase
CLLFOCLF_00784	1.55e-226	hepT	2.5.1.30	-	H	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
CLLFOCLF_00785	4.67e-203	menA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	1,4-dihydroxy-2-naphthoate
CLLFOCLF_00786	3.03e-166	menG	2.1.1.163, 2.1.1.201	-	H	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
CLLFOCLF_00787	2.11e-290	mdtG2	-	-	EGP	ko:K08161	-	ko00000,ko02000	Transporter, major facilitator family protein
CLLFOCLF_00788	2.87e-214	prpA3	3.1.3.16	-	T	ko:K01090	-	ko00000,ko01000	Calcineurin-like phosphoesterase superfamily domain
CLLFOCLF_00789	2.48e-57	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CLLFOCLF_00791	1.83e-143	sdhB	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	Serine dehydratase beta chain
CLLFOCLF_00792	5.58e-192	sdaAA	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
CLLFOCLF_00793	5.4e-135	ahpC	1.11.1.15	-	O	ko:K03386	ko04214,map04214	ko00000,ko00001,ko01000,ko04147	Peroxiredoxin
CLLFOCLF_00794	0.0	-	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Thioredoxin domain
CLLFOCLF_00795	0.0	pepD4	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLLFOCLF_00796	0.0	yjbQ	-	-	P	ko:K03455,ko:K03499	-	ko00000,ko02000	TrkA C-terminal domain protein
CLLFOCLF_00797	1.89e-35	dmpI	5.3.2.6	-	G	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Belongs to the 4-oxalocrotonate tautomerase family
CLLFOCLF_00798	0.0	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CLLFOCLF_00799	7.88e-116	-	-	-	-	-	-	-	-
CLLFOCLF_00800	3.82e-47	-	-	-	-	-	-	-	-
CLLFOCLF_00801	5.26e-12	-	-	-	K	-	-	-	Transcriptional regulator, HxlR family
CLLFOCLF_00802	1.11e-218	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
CLLFOCLF_00803	4.78e-192	epsB	-	-	M	-	-	-	biosynthesis protein
CLLFOCLF_00804	9.35e-155	ywqD	-	-	D	-	-	-	Capsular exopolysaccharide family
CLLFOCLF_00805	9.65e-176	cps2D	5.1.3.2, 5.1.3.25	-	M	ko:K01784,ko:K17947	ko00052,ko00520,ko00523,ko01100,ko01130,map00052,map00520,map00523,map01100,map01130	ko00000,ko00001,ko00002,ko01000	RmlD substrate binding domain
CLLFOCLF_00806	1e-114	tuaA	-	-	M	-	-	-	Bacterial sugar transferase
CLLFOCLF_00807	6.93e-51	-	-	-	M	-	-	-	Glycosyltransferase like family 2
CLLFOCLF_00808	1.65e-27	rfaG	-	-	M	-	-	-	Glycosyltransferase like family 2
CLLFOCLF_00809	1.55e-60	-	-	-	M	-	-	-	Glycosyl transferases group 1
CLLFOCLF_00810	2.32e-42	-	-	-	S	-	-	-	Glycosyltransferase like family 2
CLLFOCLF_00811	1.45e-71	-	-	-	M	-	-	-	Glycosyltransferase like family 2
CLLFOCLF_00813	6.68e-134	-	-	-	S	-	-	-	Polysaccharide biosynthesis protein
CLLFOCLF_00814	6.75e-20	waaD	2.4.1.56	GT4,GT9	M	ko:K00713,ko:K00754,ko:K03280	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	Glycosyl transferases group 1
CLLFOCLF_00815	5.02e-89	-	2.7.8.12	-	M	ko:K09809	-	ko00000,ko01000	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
CLLFOCLF_00816	3.69e-106	-	2.7.7.60	-	I	ko:K00991	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CLLFOCLF_00817	1.7e-121	-	-	-	M	-	-	-	Male sterility protein
CLLFOCLF_00818	1.49e-87	rfbB	4.2.1.46	-	M	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
CLLFOCLF_00819	3.72e-202	rfbD	1.1.1.133	-	M	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
CLLFOCLF_00821	2e-207	-	-	-	L	-	-	-	Integrase core domain
CLLFOCLF_00822	9.79e-72	rfbD	1.1.1.133	-	M	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
CLLFOCLF_00824	9.53e-92	-	-	-	S	-	-	-	SIR2-like domain
CLLFOCLF_00825	3.09e-122	-	-	-	S	ko:K06915	-	ko00000	Domain of unknown function DUF87
CLLFOCLF_00826	1.62e-52	-	-	-	M	-	-	-	Rib/alpha-like repeat
CLLFOCLF_00833	8.32e-104	ydcL	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLLFOCLF_00834	0.0	-	2.4.1.5	GH13	G	ko:K00689	ko00500,ko02020,map00500,map02020	ko00000,ko00001,ko01000	Glycosyl hydrolase family 70
CLLFOCLF_00837	2.21e-101	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
CLLFOCLF_00838	2.22e-163	-	-	-	-	-	-	-	-
CLLFOCLF_00839	0.0	-	-	-	-	-	-	-	-
CLLFOCLF_00841	1.11e-45	-	-	-	S	-	-	-	Domain of unknown function (DUF3173)
CLLFOCLF_00842	1.74e-291	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLLFOCLF_00843	1.48e-288	oxlT	-	-	P	ko:K08177	-	ko00000,ko02000	Major Facilitator Superfamily
CLLFOCLF_00844	1.2e-205	-	-	-	J	-	-	-	Methyltransferase
CLLFOCLF_00845	2.12e-119	ywlG	-	-	S	-	-	-	Belongs to the UPF0340 family
CLLFOCLF_00846	1.32e-55	-	-	-	K	-	-	-	PFAM GCN5-related N-acetyltransferase
CLLFOCLF_00847	1.04e-43	ltrA	-	-	S	-	-	-	Bacterial low temperature requirement A protein (LtrA)
CLLFOCLF_00848	1.52e-50	ltrA	-	-	S	-	-	-	Bacterial low temperature requirement A protein (LtrA)
CLLFOCLF_00849	2.83e-263	thiP	-	-	U	-	-	-	Belongs to the purine-cytosine permease (2.A.39) family
CLLFOCLF_00850	3.7e-19	-	-	-	-	-	-	-	-
CLLFOCLF_00851	5.75e-52	-	-	-	S	-	-	-	Cytochrome B5
CLLFOCLF_00853	1.59e-47	-	-	-	L	-	-	-	Helix-turn-helix domain
CLLFOCLF_00855	4.12e-157	-	-	-	O	-	-	-	Zinc-dependent metalloprotease
CLLFOCLF_00856	9.38e-115	luxS	4.4.1.21	-	H	ko:K07173	ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111	ko00000,ko00001,ko00002,ko01000	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
CLLFOCLF_00857	1.3e-203	metQ1	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
CLLFOCLF_00859	7.11e-08	-	-	-	NU	-	-	-	Mycoplasma protein of unknown function, DUF285
CLLFOCLF_00860	3.47e-233	-	-	-	S	ko:K07035	-	ko00000	Phosphotransferase system, EIIC
CLLFOCLF_00861	4.8e-128	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CLLFOCLF_00862	1.07e-239	-	-	-	-	-	-	-	-
CLLFOCLF_00863	6.73e-81	ptpA	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLLFOCLF_00864	1.71e-89	-	1.1.1.90	-	C	ko:K00055	ko00350,ko00360,ko00622,ko00623,ko01100,ko01120,ko01220,map00350,map00360,map00622,map00623,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Zn-dependent alcohol dehydrogenases, class III
CLLFOCLF_00865	5.11e-107	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase
CLLFOCLF_00866	2.32e-126	-	-	-	K	-	-	-	acetyltransferase
CLLFOCLF_00867	6.97e-240	-	-	-	-	-	-	-	-
CLLFOCLF_00869	3.93e-48	-	-	-	L	-	-	-	Transposase
CLLFOCLF_00870	8.03e-44	-	-	-	L	-	-	-	Transposase
CLLFOCLF_00871	2.64e-20	-	-	-	L	-	-	-	Transposase
CLLFOCLF_00872	7.7e-57	-	-	-	L	-	-	-	Transposase
CLLFOCLF_00873	6.03e-221	panE	1.1.1.169	-	H	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLLFOCLF_00874	8.5e-63	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
CLLFOCLF_00875	0.0	lysS	6.1.1.6	-	J	ko:K04567	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family
CLLFOCLF_00876	6.21e-241	dus	-	-	J	ko:K05540	-	ko00000,ko01000,ko03016	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLLFOCLF_00877	9.26e-218	hslO	-	-	O	ko:K04083	-	ko00000,ko03110	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CLLFOCLF_00878	0.0	ftsH	-	-	O	ko:K03798	-	ko00000,ko00002,ko01000,ko01002,ko03110	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLLFOCLF_00879	8.67e-124	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLLFOCLF_00880	0.0	tilS	2.4.2.8, 6.3.4.19	-	J	ko:K04075,ko:K15780	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000,ko03016	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
CLLFOCLF_00881	5.75e-103	yabR	-	-	J	ko:K07571	-	ko00000	RNA binding
CLLFOCLF_00882	2.4e-73	divIC	-	-	D	ko:K13052	-	ko00000,ko03036	Septum formation initiator
CLLFOCLF_00883	4.11e-52	yabO	-	-	J	-	-	-	S4 domain protein
CLLFOCLF_00884	0.0	mfd	-	-	L	ko:K03723	ko03420,map03420	ko00000,ko00001,ko01000,ko03400	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CLLFOCLF_00885	3.25e-131	pth	3.1.1.29	-	J	ko:K01056	-	ko00000,ko01000,ko03012	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
CLLFOCLF_00886	2.7e-145	-	-	-	S	-	-	-	(CBS) domain
CLLFOCLF_00887	8.04e-186	mhpD	-	-	Q	ko:K02509	ko00350,ko01120,map00350,map01120	ko00000,ko00001,ko01000	hydratase
CLLFOCLF_00888	1.59e-308	codA	3.5.4.1	-	F	ko:K01485	ko00240,ko00330,ko01100,map00240,map00330,map01100	ko00000,ko00001,ko01000	cytosine deaminase
CLLFOCLF_00889	0.0	-	-	-	U	-	-	-	Belongs to the purine-cytosine permease (2.A.39) family
CLLFOCLF_00890	1.3e-82	ndoA	-	-	L	ko:K07171	-	ko00000,ko01000,ko02048	Toxic component of a toxin-antitoxin (TA) module
CLLFOCLF_00891	2.85e-265	alr	5.1.1.1, 5.1.1.5	-	E	ko:K01775,ko:K20707	ko00473,ko01100,ko01502,map00473,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLLFOCLF_00892	8.96e-79	acpS	2.7.8.7	-	I	ko:K00997	ko00770,map00770	ko00000,ko00001,ko01000	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
CLLFOCLF_00893	4.54e-09	dltX	-	-	S	-	-	-	D-Ala-teichoic acid biosynthesis protein
CLLFOCLF_00894	0.0	dltA	6.1.1.13	-	H	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
CLLFOCLF_00895	1.1e-300	dltB	-	-	M	ko:K03739	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	MBOAT, membrane-bound O-acyltransferase family
CLLFOCLF_00896	5.82e-47	dltC	6.1.1.13	-	J	ko:K14188	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
CLLFOCLF_00897	0.0	dltD	-	-	M	ko:K03740	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
CLLFOCLF_00898	9.92e-216	glsA	3.5.1.2	-	E	ko:K01425	ko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230	ko00000,ko00001,ko01000	Belongs to the glutaminase family
CLLFOCLF_00899	0.0	cshA	3.6.4.13	-	F	ko:K05592	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
CLLFOCLF_00900	0.0	murF	6.3.2.10	-	M	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
CLLFOCLF_00901	2.14e-203	htpX	-	-	O	ko:K03799	-	ko00000,ko00002,ko01000,ko01002	Belongs to the peptidase M48B family
CLLFOCLF_00902	4.93e-123	lemA	-	-	S	ko:K03744	-	ko00000	LemA family
CLLFOCLF_00903	5.7e-114	ptpA	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLLFOCLF_00904	7.48e-155	-	-	-	G	-	-	-	Belongs to the phosphoglycerate mutase family
CLLFOCLF_00905	5.32e-208	fba	4.1.2.13, 4.1.2.29	-	G	ko:K01624,ko:K03339	ko00010,ko00030,ko00051,ko00562,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00562,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-1,6-bisphosphate aldolase, class II
CLLFOCLF_00906	1.67e-176	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
CLLFOCLF_00907	8.49e-191	-	-	-	G	-	-	-	Right handed beta helix region
CLLFOCLF_00908	0.0	pps	2.7.9.2	-	H	ko:K01007	ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate
CLLFOCLF_00909	1.18e-159	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	sortase family
CLLFOCLF_00910	1.78e-210	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
CLLFOCLF_00911	2.16e-301	pts13C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLLFOCLF_00912	9.43e-56	rpmE2	-	-	J	ko:K02909	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L31
CLLFOCLF_00913	1.11e-301	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CLLFOCLF_00914	0.0	pyrG	6.3.4.2	-	F	ko:K01937	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
CLLFOCLF_00915	2.44e-84	rpoE	-	-	K	ko:K03048	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko03021,ko03400	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
CLLFOCLF_00916	3.15e-71	ywiB	-	-	S	-	-	-	Domain of unknown function (DUF1934)
CLLFOCLF_00917	3.54e-190	lipL	2.3.1.200, 2.3.1.204	-	H	ko:K16869,ko:K18821	-	ko00000,ko01000	biotin lipoate A B protein ligase
CLLFOCLF_00918	0.0	ywfO	-	-	S	ko:K06885	-	ko00000	HD domain protein
CLLFOCLF_00919	3.14e-188	yidA	-	-	S	-	-	-	hydrolase
CLLFOCLF_00920	1.19e-98	-	-	-	-	-	-	-	-
CLLFOCLF_00921	2.04e-228	prs	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CLLFOCLF_00922	3.04e-312	glmU	2.3.1.157, 2.7.7.23	-	M	ko:K04042	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CLLFOCLF_00923	2.09e-190	purR	-	-	F	ko:K09685	-	ko00000,ko03000	pur operon repressor
CLLFOCLF_00924	6.12e-166	-	-	-	U	ko:K02075	-	ko00000,ko00002,ko02000	ABC 3 transport family
CLLFOCLF_00925	1.98e-157	adcC	-	-	P	ko:K02074,ko:K09817,ko:K11710	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
CLLFOCLF_00926	2.75e-213	psaA	-	-	P	ko:K02077,ko:K11707	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
CLLFOCLF_00927	6.98e-206	ispE	2.7.1.148	-	F	ko:K00919,ko:K16924	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko02000	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CLLFOCLF_00928	2.74e-50	veg	-	-	S	-	-	-	Biofilm formation stimulator VEG
CLLFOCLF_00929	4.17e-205	ksgA	2.1.1.182	-	J	ko:K02528	-	ko00000,ko01000,ko03009	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
CLLFOCLF_00930	4.96e-127	rnmV	3.1.26.8	-	J	ko:K05985	-	ko00000,ko01000	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CLLFOCLF_00931	1.46e-197	tatD	-	-	L	ko:K03424	-	ko00000,ko01000	hydrolase, TatD family
CLLFOCLF_00932	0.0	metG	6.1.1.10	-	J	ko:K01874	ko00450,ko00970,map00450,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLLFOCLF_00933	3.2e-206	yunF	-	-	F	-	-	-	Protein of unknown function DUF72
CLLFOCLF_00935	8.39e-168	cobB	-	-	K	ko:K12410	-	ko00000,ko01000	SIR2 family
CLLFOCLF_00936	1.05e-225	-	-	-	-	-	-	-	-
CLLFOCLF_00937	7.91e-288	mvaA	1.1.1.88, 2.3.1.9	-	C	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the HMG-CoA reductase family
CLLFOCLF_00938	4.38e-215	ppx	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
CLLFOCLF_00939	2.26e-242	trpS	6.1.1.2	-	J	ko:K01867	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
CLLFOCLF_00940	8.74e-234	-	2.1.1.72	-	L	ko:K00571	-	ko00000,ko01000,ko02048	Belongs to the N(4) N(6)-methyltransferase family
CLLFOCLF_00941	4.08e-106	ndk	2.7.4.6	-	F	ko:K00940	ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016	ko00000,ko00001,ko00002,ko01000,ko04131	Belongs to the NDK family
CLLFOCLF_00942	0.0	-	-	-	L	-	-	-	DNA helicase
CLLFOCLF_00943	1.29e-259	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
CLLFOCLF_00945	0.0	gabT	2.6.1.19, 5.1.1.21	-	E	ko:K00823,ko:K20708	ko00250,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00410,map00640,map00650,map01100,map01120	ko00000,ko00001,ko00002,ko01000,ko01007	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CLLFOCLF_00946	0.0	ctrA	-	-	E	ko:K03294	-	ko00000	amino acid
CLLFOCLF_00947	1.64e-151	nth	4.2.99.18	-	L	ko:K10773	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CLLFOCLF_00948	5.74e-54	-	1.3.5.4	-	S	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FMN binding
CLLFOCLF_00949	1.7e-280	blt	-	-	EGP	ko:K08153	-	ko00000,ko00002,ko02000	transporter
CLLFOCLF_00950	2.32e-212	hdhL	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
CLLFOCLF_00951	2.06e-198	metQ	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
CLLFOCLF_00952	3.47e-244	metN	-	-	P	ko:K02071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLLFOCLF_00953	5.25e-140	metI	-	-	P	ko:K02072	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLLFOCLF_00954	2.08e-19	eriC	-	-	P	ko:K03281	-	ko00000	chloride
CLLFOCLF_00955	8.8e-121	eriC	-	-	P	ko:K03281	-	ko00000	chloride
CLLFOCLF_00956	7.7e-104	msrB	1.8.4.12	-	O	ko:K07305	-	ko00000,ko01000	peptide methionine sulfoxide reductase
CLLFOCLF_00957	1.32e-136	-	-	-	P	ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, permease protein
CLLFOCLF_00958	3.69e-183	proV	-	-	E	ko:K05847	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_00959	6.73e-139	proWZ	-	-	P	ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLLFOCLF_00960	1.85e-209	proWY	-	-	M	ko:K05845	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, substrate-binding protein, QAT family
CLLFOCLF_00961	1.06e-94	ywnA	-	-	K	-	-	-	Transcriptional regulator
CLLFOCLF_00962	1.08e-65	-	-	-	GM	-	-	-	NAD(P)H-binding
CLLFOCLF_00963	2.68e-45	-	-	-	GM	-	-	-	NAD(P)H-binding
CLLFOCLF_00964	4.44e-11	-	-	-	-	-	-	-	-
CLLFOCLF_00965	6.94e-281	-	5.4.2.7	-	G	ko:K01839	ko00030,ko00230,map00030,map00230	ko00000,ko00001,ko01000	Metalloenzyme superfamily
CLLFOCLF_00966	0.0	cadA	-	-	P	-	-	-	P-type ATPase
CLLFOCLF_00967	4.58e-162	XK27_08875	-	-	O	-	-	-	PFAM peptidase M10A and M12B, matrixin and adamalysin
CLLFOCLF_00968	2.12e-162	-	-	-	-	-	-	-	-
CLLFOCLF_00969	1.85e-69	-	-	-	S	-	-	-	Sugar efflux transporter for intercellular exchange
CLLFOCLF_00970	1.28e-311	-	1.8.1.7	-	C	ko:K00383,ko:K21739	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Pyridine nucleotide-disulfide oxidoreductase
CLLFOCLF_00972	0.0	-	-	-	L	-	-	-	Helicase C-terminal domain protein
CLLFOCLF_00973	1.2e-105	-	3.6.1.27	-	I	ko:K19302	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	PAP2 superfamily
CLLFOCLF_00974	2.3e-228	ydhF	-	-	S	-	-	-	Aldo keto reductase
CLLFOCLF_00976	2.58e-36	psiE	-	-	S	ko:K13256	-	ko00000	Phosphate-starvation-inducible E
CLLFOCLF_00977	1.34e-127	-	-	-	S	ko:K07002	-	ko00000	Serine hydrolase
CLLFOCLF_00979	9.35e-231	yeaB	-	-	P	-	-	-	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CLLFOCLF_00980	0.0	nhaC	-	-	C	ko:K03315	-	ko00000,ko02000	Na H antiporter NhaC
CLLFOCLF_00981	1.83e-49	-	-	-	S	-	-	-	Cytochrome b5-like Heme/Steroid binding domain
CLLFOCLF_00982	7.28e-139	-	-	-	S	ko:K07118	-	ko00000	NAD(P)H-binding
CLLFOCLF_00983	5.26e-152	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLLFOCLF_00986	1.93e-224	-	-	-	S	-	-	-	Conserved hypothetical protein 698
CLLFOCLF_00987	4.2e-186	-	-	-	K	-	-	-	LysR substrate binding domain
CLLFOCLF_00988	2.93e-125	-	-	-	V	-	-	-	VanZ like family
CLLFOCLF_00989	1.02e-08	-	-	-	-	-	-	-	-
CLLFOCLF_00990	4.51e-32	-	-	-	-	-	-	-	-
CLLFOCLF_00992	2.47e-186	-	-	-	L	-	-	-	Transposase and inactivated derivatives IS30 family
CLLFOCLF_00994	2.16e-143	-	-	-	S	-	-	-	Fic/DOC family
CLLFOCLF_00995	1.19e-160	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLLFOCLF_00996	3.83e-26	-	-	-	-	-	-	-	-
CLLFOCLF_00999	3.41e-181	-	-	-	-	-	-	-	-
CLLFOCLF_01001	3.78e-98	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
CLLFOCLF_01007	6.23e-10	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
CLLFOCLF_01009	4.1e-219	-	-	-	S	-	-	-	PglZ domain
CLLFOCLF_01010	2.85e-65	doc	-	-	S	ko:K07341	-	ko00000,ko02048	Fic/DOC family
CLLFOCLF_01012	0.0	-	-	-	LV	-	-	-	Eco57I restriction-modification methylase
CLLFOCLF_01013	8.16e-256	-	-	-	K	-	-	-	RNA-binding protein homologous to eukaryotic snRNP
CLLFOCLF_01014	3.59e-64	-	-	-	S	-	-	-	Domain of unknown function (DUF1788)
CLLFOCLF_01015	8.1e-57	-	-	-	S	-	-	-	Putative inner membrane protein (DUF1819)
CLLFOCLF_01017	2.09e-130	ribU	-	-	U	-	-	-	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CLLFOCLF_01018	3.01e-164	rluB	5.4.99.22	-	J	ko:K06178	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
CLLFOCLF_01019	5.49e-135	scpB	-	-	D	ko:K06024	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CLLFOCLF_01020	9.25e-176	scpA	-	-	D	ko:K05896	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CLLFOCLF_01021	5.87e-83	ribT	-	-	K	ko:K02859	-	ko00000	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
CLLFOCLF_01022	9.16e-209	xerD	-	-	D	ko:K04763	-	ko00000,ko03036	recombinase XerD
CLLFOCLF_01023	1.47e-212	yitL	-	-	S	ko:K00243	-	ko00000	S1 domain
CLLFOCLF_01024	0.0	pyk	2.7.1.40	-	G	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the pyruvate kinase family
CLLFOCLF_01025	0.0	dnaE	2.7.7.7	-	L	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase
CLLFOCLF_01026	3.79e-40	-	-	-	S	-	-	-	Protein of unknown function (DUF2929)
CLLFOCLF_01027	2.61e-300	pepT	3.4.11.4	-	E	ko:K01258	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
CLLFOCLF_01028	1.1e-193	yqfO	-	-	S	-	-	-	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CLLFOCLF_01029	1.27e-159	trmK	2.1.1.217	-	S	ko:K06967	-	ko00000,ko01000,ko03016	SAM-dependent methyltransferase
CLLFOCLF_01030	7.19e-280	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLLFOCLF_01031	1.03e-265	sigA	-	-	K	ko:K03086	-	ko00000,ko03021	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
CLLFOCLF_01032	0.0	dnaG	-	-	L	ko:K02316	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
CLLFOCLF_01033	0.0	glyS	6.1.1.14	-	J	ko:K01879	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Glycyl-tRNA synthetase beta subunit
CLLFOCLF_01034	2.14e-234	glyQ	6.1.1.14	-	J	ko:K01878	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	glycyl-tRNA synthetase alpha subunit
CLLFOCLF_01035	1.02e-187	recO	-	-	L	ko:K03584	ko03440,map03440	ko00000,ko00001,ko03400	Involved in DNA repair and RecF pathway recombination
CLLFOCLF_01036	1.08e-218	era	-	-	S	ko:K03595	-	ko00000,ko03009,ko03029	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CLLFOCLF_01037	1.66e-77	dgkA	2.7.1.107, 2.7.1.66	-	M	ko:K00887,ko:K00901	ko00550,ko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00550,map00561,map00564,map01100,map01110,map04070,map04072,map05231	ko00000,ko00001,ko01000	Diacylglycerol kinase
CLLFOCLF_01038	2.21e-109	ybeY	-	-	S	ko:K07042	-	ko00000,ko03009	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CLLFOCLF_01039	2.22e-231	phoH	-	-	T	ko:K06217	-	ko00000	phosphate starvation-inducible protein PhoH
CLLFOCLF_01040	2.54e-219	birA	6.3.4.15	-	H	ko:K03524	ko00780,ko01100,map00780,map01100	ko00000,ko00001,ko01000,ko03000	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
CLLFOCLF_01041	3.65e-111	bioY	-	-	S	ko:K03523	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	BioY family
CLLFOCLF_01042	0.0	argH	4.3.2.1	-	E	ko:K01755	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	argininosuccinate lyase
CLLFOCLF_01043	2.07e-303	argG	6.3.4.5	-	E	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the argininosuccinate synthase family. Type 1 subfamily
CLLFOCLF_01044	3.3e-121	cbh	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
CLLFOCLF_01045	1.61e-92	cbh	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
CLLFOCLF_01046	6.71e-92	yqeY	-	-	S	ko:K09117	-	ko00000	YqeY-like protein
CLLFOCLF_01047	1e-31	rpsU	-	-	J	ko:K02970	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bS21 family
CLLFOCLF_01048	0.0	glnPH2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
CLLFOCLF_01049	2.57e-169	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_01050	0.0	aspS	6.1.1.12	-	J	ko:K01876	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
CLLFOCLF_01051	3.62e-212	-	-	-	G	-	-	-	Phosphotransferase enzyme family
CLLFOCLF_01052	7.65e-101	dtd	-	-	J	ko:K07560	-	ko00000,ko01000,ko03016	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
CLLFOCLF_01053	0.0	relA	2.7.6.5	-	KT	ko:K00951	ko00230,map00230	ko00000,ko00001,ko01000	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CLLFOCLF_01054	1.94e-68	-	-	-	-	-	-	-	-
CLLFOCLF_01055	1.08e-161	rsmE	2.1.1.193	-	J	ko:K09761	-	ko00000,ko01000,ko03009	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
CLLFOCLF_01056	1.89e-228	prmA	-	-	J	ko:K02687	-	ko00000,ko01000,ko03009	Ribosomal protein L11 methyltransferase
CLLFOCLF_01057	3.36e-77	-	-	-	-	-	-	-	-
CLLFOCLF_01059	7.92e-221	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLLFOCLF_01061	1.74e-177	-	-	-	C	-	-	-	Belongs to the LDH2 MDH2 oxidoreductase family
CLLFOCLF_01062	0.0	pepD3	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLLFOCLF_01063	0.0	lepA	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
CLLFOCLF_01064	1.81e-272	dnaJ	-	-	O	ko:K03686	-	ko00000,ko03029,ko03110	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
CLLFOCLF_01065	0.0	dnaK	-	-	O	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Heat shock 70 kDa protein
CLLFOCLF_01066	3.69e-114	grpE	-	-	O	ko:K03687	-	ko00000,ko03029,ko03110	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CLLFOCLF_01067	7.6e-246	hrcA	-	-	K	ko:K03705	-	ko00000,ko03000	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
CLLFOCLF_01068	1.04e-83	-	-	-	-	-	-	-	-
CLLFOCLF_01069	3.13e-225	ribF	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the ribF family
CLLFOCLF_01070	1.52e-209	truB	5.4.99.25	-	J	ko:K03177,ko:K03483	-	ko00000,ko01000,ko03000,ko03016	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CLLFOCLF_01071	2.79e-77	rbfA	-	-	J	ko:K02834	-	ko00000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CLLFOCLF_01072	0.0	infB	-	-	J	ko:K02519	-	ko00000,ko03012,ko03029	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CLLFOCLF_01073	7.97e-65	ylxQ	-	-	J	-	-	-	ribosomal protein
CLLFOCLF_01074	5.93e-60	ylxR	-	-	K	ko:K07742	-	ko00000	Protein of unknown function (DUF448)
CLLFOCLF_01075	1.18e-274	nusA	-	-	K	ko:K02600	-	ko00000,ko03009,ko03021	Participates in both transcription termination and antitermination
CLLFOCLF_01076	6.36e-108	rimP	-	-	J	ko:K09748	-	ko00000,ko03009	Required for maturation of 30S ribosomal subunits
CLLFOCLF_01077	0.0	polC	2.7.7.7	-	L	ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLLFOCLF_01078	0.0	proS	6.1.1.15	-	J	ko:K01881	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
CLLFOCLF_01079	3.85e-297	rseP	-	-	M	ko:K11749	ko02024,ko04112,map02024,map04112	ko00000,ko00001,ko01000,ko01002	zinc metalloprotease
CLLFOCLF_01080	5.83e-178	cdsA	2.7.7.41	-	I	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the CDS family
CLLFOCLF_01081	1.29e-182	uppS	2.5.1.31	-	H	ko:K00806	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CLLFOCLF_01082	3.48e-122	frr	-	-	J	ko:K02838	-	ko00000,ko03012	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
CLLFOCLF_01083	1.72e-166	pyrH	2.7.4.22	-	F	ko:K09903	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphorylation of UMP to UDP
CLLFOCLF_01084	1.82e-196	tsf	-	-	J	ko:K02357	-	ko00000,ko03012,ko03029	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CLLFOCLF_01085	2.91e-183	rpsB	-	-	J	ko:K02967	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS2 family
CLLFOCLF_01086	1.62e-230	ldhD	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLLFOCLF_01087	9.65e-65	yazA	-	-	L	ko:K07461	-	ko00000	GIY-YIG catalytic domain protein
CLLFOCLF_01088	1.62e-179	yabB	2.1.1.223	-	L	ko:K07461,ko:K15460	-	ko00000,ko01000,ko03016	Methyltransferase small domain
CLLFOCLF_01089	1.84e-152	plsC	2.3.1.51	-	I	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Acyltransferase
CLLFOCLF_01090	1.6e-40	XK26_06720	-	-	S	ko:K09976	-	ko00000	Uncharacterised protein family (UPF0154)
CLLFOCLF_01091	2.7e-47	ynzC	-	-	S	-	-	-	UPF0291 protein
CLLFOCLF_01092	2.52e-148	lexA	3.4.21.88	-	K	ko:K01356	-	ko00000,ko00002,ko01000,ko01002,ko03400	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CLLFOCLF_01093	1.94e-268	mvaS	2.3.3.10	-	I	ko:K01641	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Hydroxymethylglutaryl-CoA synthase
CLLFOCLF_01094	7.21e-164	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CLLFOCLF_01099	1.03e-72	-	-	-	-	-	-	-	-
CLLFOCLF_01101	1.78e-119	-	-	-	S	ko:K06919	-	ko00000	D5 N terminal like
CLLFOCLF_01102	3.52e-63	-	-	-	S	-	-	-	Bifunctional DNA primase/polymerase, N-terminal
CLLFOCLF_01107	1.2e-29	-	-	-	S	-	-	-	Helix-turn-helix domain
CLLFOCLF_01108	2.96e-20	ansR	-	-	K	-	-	-	Transcriptional regulator
CLLFOCLF_01109	4.29e-16	-	-	-	M	-	-	-	LysM domain
CLLFOCLF_01110	5.58e-173	int2	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLLFOCLF_01111	2.18e-122	-	-	-	-	-	-	-	-
CLLFOCLF_01112	1.25e-119	apt	2.4.2.7	-	F	ko:K00759	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000,ko04147	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CLLFOCLF_01113	0.0	recJ	-	-	L	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	ko00000,ko00001,ko01000,ko03400	Single-stranded-DNA-specific exonuclease RecJ
CLLFOCLF_01114	2.9e-199	fabG	1.1.1.100	-	S	ko:K00059,ko:K07124	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Belongs to the short-chain dehydrogenases reductases (SDR) family
CLLFOCLF_01115	2.79e-225	rnz	3.1.26.11	-	J	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
CLLFOCLF_01116	2.8e-313	obg	-	-	S	ko:K03979	-	ko00000,ko01000,ko03009	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CLLFOCLF_01117	0.0	uvrC	-	-	L	ko:K03703	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
CLLFOCLF_01118	1.11e-78	-	-	-	S	-	-	-	mazG nucleotide pyrophosphohydrolase
CLLFOCLF_01119	2.01e-139	engB	-	-	D	ko:K03978	-	ko00000,ko03036	Necessary for normal cell division and for the maintenance of normal septation
CLLFOCLF_01120	2.06e-297	clpX	-	-	O	ko:K03544	ko04112,map04112	ko00000,ko00001,ko03110	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CLLFOCLF_01121	5.54e-303	tig	-	-	D	ko:K03545	-	ko00000	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
CLLFOCLF_01122	4.94e-288	tuf	-	-	J	ko:K02358,ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03012,ko03029,ko04147	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CLLFOCLF_01123	3.07e-209	-	-	-	S	-	-	-	Tetratricopeptide repeat
CLLFOCLF_01124	0.0	rnjB	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLLFOCLF_01125	1.74e-57	rpsO	-	-	J	ko:K02956	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CLLFOCLF_01126	1.44e-47	rpsT	-	-	J	ko:K02968	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 16S ribosomal RNA
CLLFOCLF_01127	2.27e-200	holA	2.7.7.7	-	L	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III delta subunit
CLLFOCLF_01128	0.0	comEC	-	-	S	ko:K02238	-	ko00000,ko00002,ko02044	Competence protein ComEC
CLLFOCLF_01129	2.47e-116	comEB	3.5.4.12	-	F	ko:K01493	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko02044	ComE operon protein 2
CLLFOCLF_01130	4.83e-138	comEA	-	-	L	ko:K02237	-	ko00000,ko00002,ko02044	Competence protein ComEA
CLLFOCLF_01131	2.03e-250	lon	-	-	T	ko:K07177	ko02024,map02024	ko00000,ko00001,ko01002	Belongs to the peptidase S16 family
CLLFOCLF_01132	3.05e-116	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CLLFOCLF_01133	6.53e-127	rsmD	2.1.1.171	-	L	ko:K08316	-	ko00000,ko01000,ko03009	RNA methyltransferase, RsmD family
CLLFOCLF_01134	6.37e-60	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2129)
CLLFOCLF_01135	4.36e-283	ftsW	-	-	D	ko:K03588	ko04112,map04112	ko00000,ko00001,ko02000,ko03036	Belongs to the SEDS family
CLLFOCLF_01136	0.0	typA	-	-	T	ko:K06207	-	ko00000	GTP-binding protein TypA
CLLFOCLF_01137	2.28e-173	suhB	3.1.3.25	-	G	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the inositol monophosphatase superfamily
CLLFOCLF_01138	1.94e-61	yktA	-	-	S	-	-	-	Belongs to the UPF0223 family
CLLFOCLF_01139	1.67e-249	-	-	-	S	-	-	-	Helix-turn-helix domain
CLLFOCLF_01140	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
CLLFOCLF_01141	1.04e-69	-	-	-	M	-	-	-	Lysin motif
CLLFOCLF_01142	1.55e-152	cmk	2.7.4.25	-	F	ko:K00945	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the cytidylate kinase family. Type 1 subfamily
CLLFOCLF_01143	1.49e-274	rpsA	-	-	J	ko:K02945	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein S1
CLLFOCLF_01144	9.51e-317	der	-	-	S	ko:K03977	-	ko00000,ko03009	GTPase that plays an essential role in the late steps of ribosome biogenesis
CLLFOCLF_01145	1.6e-54	hup	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
CLLFOCLF_01146	2.61e-298	XK27_05225	-	-	S	-	-	-	Tetratricopeptide repeat protein
CLLFOCLF_01147	1.42e-286	cca	2.7.7.72	-	J	ko:K00974	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
CLLFOCLF_01148	0.0	yfmR	-	-	S	ko:K15738	-	ko00000,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_01149	1.41e-244	thyA	2.1.1.45	-	F	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CLLFOCLF_01150	1.95e-118	folA	1.5.1.3	-	H	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CLLFOCLF_01151	5.85e-141	hlyIII	-	-	S	ko:K11068	-	ko00000,ko02042	protein, hemolysin III
CLLFOCLF_01152	1.83e-195	WQ51_01275	-	-	S	-	-	-	EDD domain protein, DegV family
CLLFOCLF_01153	2.09e-215	-	-	-	E	-	-	-	lipolytic protein G-D-S-L family
CLLFOCLF_01154	1.16e-140	ypmS	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2140)
CLLFOCLF_01155	1.33e-47	yozE	-	-	S	-	-	-	Belongs to the UPF0346 family
CLLFOCLF_01156	5.96e-206	rbgA	-	-	S	ko:K14540	-	ko00000,ko03009	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CLLFOCLF_01157	5.63e-178	rnhB	3.1.26.4	-	L	ko:K03470	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CLLFOCLF_01158	1.85e-205	dprA	-	-	LU	ko:K04096	-	ko00000	DNA protecting protein DprA
CLLFOCLF_01159	0.0	topA	5.99.1.2	-	L	ko:K03168	-	ko00000,ko01000,ko03032,ko03400	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CLLFOCLF_01160	3.08e-209	lacX	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Aldose 1-epimerase
CLLFOCLF_01161	1.23e-135	plsY	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
CLLFOCLF_01162	0.0	parE	-	-	L	ko:K02622	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
CLLFOCLF_01163	0.0	parC	-	-	L	ko:K02621	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
CLLFOCLF_01164	1.02e-103	-	-	-	F	-	-	-	NUDIX domain
CLLFOCLF_01165	1.81e-222	ppaC	3.6.1.1	-	C	ko:K15986	ko00190,map00190	ko00000,ko00001,ko01000	inorganic pyrophosphatase
CLLFOCLF_01166	2.49e-87	-	-	-	S	-	-	-	Belongs to the HesB IscA family
CLLFOCLF_01167	1.61e-35	-	-	-	-	-	-	-	-
CLLFOCLF_01169	2.87e-112	ywnH	2.3.1.183	-	M	ko:K03823	ko00440,ko01130,map00440,map01130	ko00000,ko00001,ko01000	Acetyltransferase (GNAT) domain
CLLFOCLF_01170	3.7e-79	asp1	-	-	S	-	-	-	Asp23 family, cell envelope-related function
CLLFOCLF_01171	3.61e-34	-	-	-	-	-	-	-	-
CLLFOCLF_01172	7.38e-121	-	-	-	-	-	-	-	-
CLLFOCLF_01173	0.0	gntK	2.7.1.12	-	G	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko01000	Belongs to the FGGY kinase family
CLLFOCLF_01174	2.66e-230	-	-	-	K	ko:K02525	-	ko00000,ko03000	Transcriptional regulator, LacI family
CLLFOCLF_01175	1.13e-252	gntP	-	-	EG	ko:K03299	-	ko00000,ko02000	Gluconate
CLLFOCLF_01176	4.71e-301	int	-	-	L	ko:K06400	-	ko00000	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CLLFOCLF_01177	1.38e-53	-	-	-	S	-	-	-	Domain of unknown function DUF1829
CLLFOCLF_01178	3.01e-46	-	-	-	-	-	-	-	-
CLLFOCLF_01181	7.41e-65	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLLFOCLF_01182	1.54e-10	-	-	-	-	-	-	-	-
CLLFOCLF_01183	9.58e-154	-	-	-	K	ko:K07741	-	ko00000	BRO family, N-terminal domain
CLLFOCLF_01190	2.44e-55	-	-	-	S	-	-	-	ERF superfamily
CLLFOCLF_01191	2.03e-107	-	-	-	S	-	-	-	Putative HNHc nuclease
CLLFOCLF_01192	2.39e-30	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Single-stranded DNA-binding protein
CLLFOCLF_01193	5.46e-36	-	-	-	L	-	-	-	DnaD domain protein
CLLFOCLF_01194	5.74e-44	-	-	-	L	ko:K02315	-	ko00000,ko03032	IstB-like ATP binding protein
CLLFOCLF_01198	3.37e-32	-	-	-	S	-	-	-	Protein of unknown function (DUF1064)
CLLFOCLF_01201	2.82e-37	-	-	-	-	-	-	-	-
CLLFOCLF_01208	5.14e-87	-	-	-	K	-	-	-	Protein of unknown function (DUF4065)
CLLFOCLF_01209	6.15e-34	-	-	-	-	-	-	-	-
CLLFOCLF_01210	1.15e-15	-	-	-	-	-	-	-	-
CLLFOCLF_01213	8.04e-189	-	-	-	L	-	-	-	HNH nucleases
CLLFOCLF_01214	2.81e-101	-	-	-	L	-	-	-	Phage terminase, small subunit
CLLFOCLF_01215	0.0	terL	-	-	S	-	-	-	overlaps another CDS with the same product name
CLLFOCLF_01217	1.31e-306	-	-	-	S	-	-	-	Phage portal protein
CLLFOCLF_01218	1.18e-146	-	-	-	S	ko:K06904	-	ko00000	Caudovirus prohead serine protease
CLLFOCLF_01219	3.13e-202	-	-	-	S	-	-	-	Phage capsid family
CLLFOCLF_01220	8.12e-90	-	-	-	S	-	-	-	Phage gp6-like head-tail connector protein
CLLFOCLF_01221	2.61e-53	-	-	-	S	-	-	-	Phage head-tail joining protein
CLLFOCLF_01222	7.55e-82	-	-	-	S	-	-	-	Bacteriophage HK97-gp10, putative tail-component
CLLFOCLF_01223	1.15e-99	-	-	-	-	-	-	-	-
CLLFOCLF_01224	9.12e-147	-	-	-	-	-	-	-	-
CLLFOCLF_01226	8.23e-28	-	-	-	-	-	-	-	-
CLLFOCLF_01227	0.0	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
CLLFOCLF_01228	1.22e-173	-	-	-	S	-	-	-	Phage tail protein
CLLFOCLF_01229	8.11e-276	spoIIQ	-	-	M	ko:K06386	-	ko00000	Peptidase family M23
CLLFOCLF_01231	3.34e-113	-	-	-	S	-	-	-	Domain of unknown function (DUF2479)
CLLFOCLF_01235	1.06e-43	-	-	-	-	-	-	-	-
CLLFOCLF_01236	1.15e-59	-	-	-	S	-	-	-	Bacteriophage holin of superfamily 6 (Holin_LLH)
CLLFOCLF_01237	4.71e-194	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
CLLFOCLF_01238	1.05e-26	-	-	-	-	-	-	-	-
CLLFOCLF_01239	0.0	gntK	2.7.1.12	-	G	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko01000	Belongs to the FGGY kinase family
CLLFOCLF_01240	2.93e-125	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLLFOCLF_01241	5.39e-28	-	-	-	-	-	-	-	-
CLLFOCLF_01242	1.81e-41	-	-	-	-	-	-	-	-
CLLFOCLF_01243	1.26e-60	-	-	-	-	-	-	-	-
CLLFOCLF_01244	6.49e-104	-	-	-	S	-	-	-	Protein of unknown function (DUF805)
CLLFOCLF_01245	8.37e-41	-	-	-	LO	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
CLLFOCLF_01246	0.0	-	-	-	L	-	-	-	PLD-like domain
CLLFOCLF_01257	1.74e-125	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLLFOCLF_01258	3.48e-203	lmrB	-	-	U	ko:K18926	-	ko00000,ko00002,ko02000	Belongs to the major facilitator superfamily
CLLFOCLF_01259	7.58e-71	lmrB	-	-	U	ko:K18926	-	ko00000,ko00002,ko02000	Belongs to the major facilitator superfamily
CLLFOCLF_01260	0.0	nrdD	1.1.98.6	-	F	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Ribonucleoside-triphosphate reductase
CLLFOCLF_01261	1.61e-143	nrdG	1.97.1.4	-	O	ko:K04068	-	ko00000,ko01000	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CLLFOCLF_01262	7.79e-205	-	-	-	O	-	-	-	Uncharacterized protein family (UPF0051)
CLLFOCLF_01263	5.35e-86	-	-	-	M	-	-	-	LysM domain protein
CLLFOCLF_01264	0.0	-	-	-	EP	-	-	-	Psort location Cytoplasmic, score
CLLFOCLF_01265	6.6e-131	-	-	-	M	-	-	-	LysM domain protein
CLLFOCLF_01266	3.95e-126	exoA	3.1.11.2	-	L	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	exodeoxyribonuclease III
CLLFOCLF_01267	6.91e-299	-	1.3.1.1	-	E	ko:K17722	ko00240,ko00410,ko00770,ko01100,map00240,map00410,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CLLFOCLF_01268	3.25e-309	-	1.3.1.1	-	C	ko:K17723	ko00240,ko00410,ko00770,ko01100,map00240,map00410,map00770,map01100	ko00000,ko00001,ko00002,ko01000	4Fe-4S dicluster domain
CLLFOCLF_01269	3.69e-196	yeaE	-	-	S	-	-	-	Aldo keto
CLLFOCLF_01270	3.81e-100	hsp	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
CLLFOCLF_01271	0.0	umuC	-	-	L	ko:K03502	-	ko00000,ko03400	impB/mucB/samB family C-terminal domain
CLLFOCLF_01272	4.4e-101	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
CLLFOCLF_01273	1e-101	-	-	-	S	-	-	-	Short repeat of unknown function (DUF308)
CLLFOCLF_01274	7.03e-33	-	-	-	-	-	-	-	-
CLLFOCLF_01275	5.83e-135	-	-	-	V	-	-	-	VanZ like family
CLLFOCLF_01276	2.01e-302	cycA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
CLLFOCLF_01277	1.46e-110	perR	-	-	P	ko:K03711,ko:K09825	-	ko00000,ko03000	Belongs to the Fur family
CLLFOCLF_01278	0.0	-	-	-	EGP	-	-	-	Major Facilitator
CLLFOCLF_01279	7.72e-122	tag1	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	glycosylase
CLLFOCLF_01280	2.71e-280	metK	2.5.1.6	-	H	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CLLFOCLF_01281	0.0	leuS	6.1.1.4	-	J	ko:K01869	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Belongs to the class-I aminoacyl-tRNA synthetase family
CLLFOCLF_01282	1.77e-56	-	-	-	-	-	-	-	-
CLLFOCLF_01283	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
CLLFOCLF_01284	2.05e-195	nnrD	4.2.1.136, 5.1.99.6	-	H	ko:K17758,ko:K17759	-	ko00000,ko01000	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CLLFOCLF_01285	0.0	pepV	3.5.1.18	-	E	ko:K01270,ko:K01274,ko:K01439	ko00300,ko00480,ko01100,ko01120,ko01230,map00300,map00480,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	dipeptidase PepV
CLLFOCLF_01286	2.18e-112	-	-	-	T	-	-	-	Belongs to the universal stress protein A family
CLLFOCLF_01287	2.83e-225	-	-	-	NU	-	-	-	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CLLFOCLF_01288	3.06e-150	dgk2	-	-	F	-	-	-	deoxynucleoside kinase
CLLFOCLF_01289	1.78e-145	-	-	-	-	-	-	-	-
CLLFOCLF_01290	3.58e-238	rbsR	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding proteins and sugar binding domain of LacI family
CLLFOCLF_01291	8.09e-208	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLLFOCLF_01292	1.78e-42	-	-	-	-	-	-	-	-
CLLFOCLF_01293	4.46e-141	XK27_07085	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
CLLFOCLF_01294	9.17e-59	-	-	-	-	-	-	-	-
CLLFOCLF_01296	3.65e-90	-	-	-	-	-	-	-	-
CLLFOCLF_01297	8.28e-73	folB	1.13.11.81, 4.1.2.25, 5.1.99.8	-	H	ko:K01633	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CLLFOCLF_01298	1.25e-118	folK	2.7.6.3	-	H	ko:K00950	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
CLLFOCLF_01299	1.94e-135	folE	2.7.6.3, 3.5.4.16	-	F	ko:K00950,ko:K01495	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	GTP cyclohydrolase 1
CLLFOCLF_01300	1.06e-280	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
CLLFOCLF_01301	4.06e-134	folQ	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Ham1 family
CLLFOCLF_01302	1.67e-270	folP	2.5.1.15	-	H	ko:K00796	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	dihydropteroate synthase
CLLFOCLF_01303	1.88e-60	-	-	-	-	-	-	-	-
CLLFOCLF_01304	2.47e-53	-	-	-	-	-	-	-	-
CLLFOCLF_01306	3.72e-211	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLLFOCLF_01307	6.15e-194	thiD	2.7.1.49, 2.7.4.7	-	H	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Phosphomethylpyrimidine kinase
CLLFOCLF_01308	0.0	argS	6.1.1.19	-	J	ko:K01887	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Arginyl-tRNA synthetase
CLLFOCLF_01309	0.0	pbp2A	2.4.1.129, 3.4.16.4	GT51	M	ko:K12555	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein
CLLFOCLF_01310	2.42e-64	yheA	-	-	S	-	-	-	Belongs to the UPF0342 family
CLLFOCLF_01311	2.15e-281	yhaO	-	-	L	ko:K03547	-	ko00000,ko03400	Ser Thr phosphatase family protein
CLLFOCLF_01312	0.0	yhaN	-	-	L	-	-	-	AAA domain
CLLFOCLF_01313	4.08e-176	prsA	5.2.1.8	-	M	ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
CLLFOCLF_01314	8.62e-102	hit	-	-	FG	ko:K02503	-	ko00000,ko04147	histidine triad
CLLFOCLF_01315	2.7e-175	ecsA	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_01316	2.32e-279	ecsB	-	-	U	ko:K01992	-	ko00000,ko00002,ko02000	ABC transporter
CLLFOCLF_01317	6.19e-156	trmB	2.1.1.33	-	J	ko:K03439	-	ko00000,ko01000,ko03016	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
CLLFOCLF_01318	1.43e-38	-	-	-	S	-	-	-	YSIRK type signal peptide
CLLFOCLF_01319	1.56e-13	glsA	3.5.1.2	-	E	ko:K01425	ko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230	ko00000,ko00001,ko01000	Belongs to the glutaminase family
CLLFOCLF_01320	5.37e-74	-	-	-	S	-	-	-	Small secreted protein
CLLFOCLF_01321	2.95e-75	ytpP	-	-	CO	-	-	-	Thioredoxin
CLLFOCLF_01322	4.88e-154	ytpR	-	-	J	ko:K06878	-	ko00000	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
CLLFOCLF_01323	0.0	murC	6.3.2.8	-	M	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Belongs to the MurCDEF family
CLLFOCLF_01324	6.48e-154	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
CLLFOCLF_01325	0.0	polA	2.7.7.7	-	L	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	ko00000,ko00001,ko01000,ko03032,ko03400	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLLFOCLF_01326	5.3e-202	fpg	3.2.2.23, 4.2.99.18	-	L	ko:K10563	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
CLLFOCLF_01327	9.4e-126	coaE	2.7.1.24	-	F	ko:K00859	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CLLFOCLF_01328	2.82e-105	nrdR	-	-	K	ko:K07738	-	ko00000,ko03000	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CLLFOCLF_01329	3.85e-298	dnaB	-	-	L	ko:K03346	-	ko00000,ko03032	replication initiation and membrane attachment
CLLFOCLF_01330	8.6e-222	dnaI	-	-	L	ko:K11144	-	ko00000,ko03032	Primosomal protein DnaI
CLLFOCLF_01331	1.07e-110	infC	-	-	J	ko:K02520	-	ko00000,ko03012,ko03029	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CLLFOCLF_01332	1.82e-37	rpmI	-	-	J	ko:K02916	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL35 family
CLLFOCLF_01333	5.46e-74	rplT	-	-	J	ko:K02887	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CLLFOCLF_01334	6.39e-124	yqeG	-	-	S	ko:K07015	-	ko00000	HAD phosphatase, family IIIA
CLLFOCLF_01335	2.21e-278	yqeH	-	-	S	ko:K06948	-	ko00000,ko03009	Ribosome biogenesis GTPase YqeH
CLLFOCLF_01336	5.4e-63	yhbY	-	-	J	ko:K07574	-	ko00000,ko03009	RNA-binding protein
CLLFOCLF_01337	1.11e-154	nadD	2.7.7.18	-	H	ko:K00969	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CLLFOCLF_01338	1.64e-142	yqeK	-	-	H	-	-	-	Hydrolase, HD family
CLLFOCLF_01339	1.9e-79	rsfS	-	-	J	ko:K09710	-	ko00000,ko03009	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
CLLFOCLF_01340	4.83e-174	yqeM	-	-	Q	-	-	-	Methyltransferase
CLLFOCLF_01341	2.98e-268	ylbM	-	-	S	-	-	-	Belongs to the UPF0348 family
CLLFOCLF_01342	2.89e-129	ylbN	-	-	S	ko:K07040	-	ko00000	Uncharacterized ACR, COG1399
CLLFOCLF_01343	7.21e-39	rpmF	-	-	J	ko:K02911	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bL32 family
CLLFOCLF_01344	9.72e-156	csrR	-	-	K	-	-	-	response regulator
CLLFOCLF_01345	0.0	arlS	2.7.13.3	-	T	ko:K18940	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
CLLFOCLF_01346	0.0	potE	-	-	E	-	-	-	Amino Acid
CLLFOCLF_01347	1.51e-297	-	-	-	V	-	-	-	MatE
CLLFOCLF_01348	3.07e-89	def2	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins
CLLFOCLF_01349	3.89e-215	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
CLLFOCLF_01350	4.22e-59	acyP	3.6.1.7	-	C	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	ko00000,ko00001,ko01000	Belongs to the acylphosphatase family
CLLFOCLF_01351	1.1e-185	spoU	-	-	J	ko:K03437	-	ko00000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLLFOCLF_01352	3.75e-119	XK27_09705	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLLFOCLF_01353	5.79e-78	yodB	-	-	K	-	-	-	Transcriptional regulator, HxlR family
CLLFOCLF_01354	6.06e-251	pheS	6.1.1.20	-	J	ko:K01889	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CLLFOCLF_01355	0.0	pheT	6.1.1.20	-	J	ko:K01890	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
CLLFOCLF_01356	9.83e-148	-	-	-	M	-	-	-	PFAM NLP P60 protein
CLLFOCLF_01357	1.14e-149	udk	2.7.1.48	-	F	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Cytidine monophosphokinase
CLLFOCLF_01358	6.08e-102	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
CLLFOCLF_01359	0.0	bamA	-	-	GM	ko:K07277,ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko02000,ko03016,ko03019,ko03029	domain, Protein
CLLFOCLF_01360	0.0	-	-	-	S	-	-	-	Peptidase, M23
CLLFOCLF_01361	0.0	-	-	-	M	-	-	-	NlpC/P60 family
CLLFOCLF_01362	0.0	prfC	-	-	J	ko:K02837	-	ko00000,ko03012	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CLLFOCLF_01363	2.39e-301	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
CLLFOCLF_01364	3.74e-232	yueF	-	-	S	-	-	-	AI-2E family transporter
CLLFOCLF_01365	8.28e-203	csd1	3.5.1.28	-	M	ko:K01447,ko:K17733,ko:K19117	-	ko00000,ko01000,ko01002,ko01011,ko02048	N-Acetylmuramoyl-L-alanine amidase
CLLFOCLF_01366	6.42e-200	rfbD	1.1.1.133	-	M	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
CLLFOCLF_01367	1.49e-87	rfbB	4.2.1.46	-	M	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
CLLFOCLF_01368	7.93e-140	rfbC	5.1.3.13	-	M	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
CLLFOCLF_01369	1.58e-205	rfbA	2.7.7.24	-	H	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CLLFOCLF_01370	0.0	-	-	CBM50	NU	ko:K02395,ko:K19223	-	ko00000,ko01000,ko01002,ko01011,ko02035	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CLLFOCLF_01371	2.46e-173	-	-	-	-	-	-	-	-
CLLFOCLF_01372	4.52e-184	-	-	-	M	-	-	-	Glycosyl transferase family 2
CLLFOCLF_01373	5.44e-96	-	-	-	-	-	-	-	-
CLLFOCLF_01374	6.45e-89	-	-	-	S	-	-	-	Acyltransferase family
CLLFOCLF_01375	4.99e-98	-	-	-	S	ko:K07011	-	ko00000	Glycosyltransferase, group 2 family protein
CLLFOCLF_01376	4.46e-84	-	-	-	S	-	-	-	Glycosyltransferase like family
CLLFOCLF_01377	1.1e-95	-	-	GT2	M	ko:K12997	-	ko00000,ko01000,ko01003,ko01005	Glycosyl transferase family 2
CLLFOCLF_01378	9.63e-38	-	-	-	M	-	-	-	biosynthesis protein
CLLFOCLF_01379	2.69e-109	-	-	-	-	-	-	-	-
CLLFOCLF_01380	4.89e-94	-	-	-	M	-	-	-	transferase activity, transferring glycosyl groups
CLLFOCLF_01381	2.42e-265	cps1C	-	-	S	ko:K03328	-	ko00000	Membrane protein involved in the export of O-antigen and teichoic acid
CLLFOCLF_01382	4.12e-277	glf	5.4.99.9	-	M	ko:K01854	ko00052,ko00520,map00052,map00520	ko00000,ko00001,ko01000	UDP-galactopyranose mutase
CLLFOCLF_01383	2.54e-45	-	-	-	-	-	-	-	-
CLLFOCLF_01384	1.1e-199	-	-	-	G	-	-	-	Peptidase_C39 like family
CLLFOCLF_01385	0.0	spoIIQ	-	-	M	ko:K06386	-	ko00000	Peptidase family M23
CLLFOCLF_01386	2.23e-150	-	-	-	M	-	-	-	Bacterial sugar transferase
CLLFOCLF_01387	2.87e-218	yfdH	-	GT2	M	ko:K12999	-	ko00000,ko01000,ko01003,ko01005	Glycosyltransferase, group 2 family protein
CLLFOCLF_01388	1.57e-188	cps1D	-	-	M	-	-	-	Domain of unknown function (DUF4422)
CLLFOCLF_01389	4.55e-172	recX	-	-	S	ko:K03565	-	ko00000,ko03400	Regulatory protein RecX
CLLFOCLF_01390	2.53e-42	-	-	-	-	-	-	-	-
CLLFOCLF_01391	1.26e-46	-	-	-	S	-	-	-	Protein of unknown function (DUF2922)
CLLFOCLF_01392	5.01e-197	rbn	-	-	S	ko:K07058	-	ko00000	Belongs to the UPF0761 family
CLLFOCLF_01393	0.0	potE	-	-	E	-	-	-	Amino Acid
CLLFOCLF_01394	0.0	arcD	-	-	E	ko:K03758	-	ko00000,ko02000	Arginine ornithine antiporter
CLLFOCLF_01395	1.69e-281	arcT	-	-	E	-	-	-	Aminotransferase
CLLFOCLF_01396	4.96e-216	map	3.4.11.18	-	E	ko:K01265	-	ko00000,ko01000,ko01002	Methionine Aminopeptidase
CLLFOCLF_01397	1.92e-102	ykuP	-	-	C	ko:K03839	-	ko00000	Flavodoxin
CLLFOCLF_01398	2.45e-88	gtcA	-	-	S	-	-	-	Teichoic acid glycosylation protein
CLLFOCLF_01399	1.01e-26	-	-	-	-	-	-	-	-
CLLFOCLF_01400	2.09e-266	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
CLLFOCLF_01402	9.46e-298	yfmL	-	-	L	-	-	-	DEAD DEAH box helicase
CLLFOCLF_01403	1.08e-244	mocA	-	-	S	-	-	-	Oxidoreductase
CLLFOCLF_01404	4.62e-81	-	-	-	S	-	-	-	Domain of unknown function (DUF4828)
CLLFOCLF_01405	1.46e-135	-	3.2.2.10	-	S	ko:K06966	ko00230,ko00240,map00230,map00240	ko00000,ko00001,ko01000	Belongs to the LOG family
CLLFOCLF_01406	2.16e-212	-	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
CLLFOCLF_01407	0.0	gshA	6.3.2.2	-	H	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the glutamate--cysteine ligase type 1 family
CLLFOCLF_01408	1.36e-248	-	-	-	S	-	-	-	Protein of unknown function (DUF3114)
CLLFOCLF_01409	1.85e-104	yjcF	3.5.4.33, 4.4.1.8	-	K	ko:K02348,ko:K07000,ko:K11991,ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007,ko03016	protein acetylation
CLLFOCLF_01410	7.25e-150	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
CLLFOCLF_01411	1.46e-119	-	-	-	K	-	-	-	Acetyltransferase (GNAT) family
CLLFOCLF_01412	2.03e-100	-	-	-	K	-	-	-	LytTr DNA-binding domain
CLLFOCLF_01413	2.62e-89	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
CLLFOCLF_01414	1e-217	-	3.2.1.96, 3.5.1.28	GH73	M	ko:K01227,ko:K01447,ko:K13714,ko:K13731	ko00511,ko05100,map00511,map05100	ko00000,ko00001,ko01000	N-acetylmuramoyl-L-alanine amidase
CLLFOCLF_01415	2.07e-97	adaB	2.1.1.63	-	L	ko:K00567,ko:K10778,ko:K13531	-	ko00000,ko01000,ko03000,ko03400	Methyltransferase
CLLFOCLF_01416	5.92e-38	pnb	-	-	C	-	-	-	nitroreductase
CLLFOCLF_01417	8.49e-85	pnb	-	-	C	-	-	-	nitroreductase
CLLFOCLF_01418	4.18e-119	-	-	-	-	-	-	-	-
CLLFOCLF_01419	1.38e-108	yvbK	-	-	K	-	-	-	GNAT family
CLLFOCLF_01420	1.76e-313	-	1.8.1.7	-	C	ko:K00383	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	pyridine nucleotide-disulfide oxidoreductase
CLLFOCLF_01421	2.44e-266	amt	-	-	P	ko:K03320	-	ko00000,ko02000	ammonium transporter
CLLFOCLF_01422	0.0	mprF	2.3.2.3	-	S	ko:K14205	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CLLFOCLF_01423	7.62e-132	-	3.5.1.124	-	S	ko:K03152	-	ko00000,ko01000,ko01002	DJ-1/PfpI family
CLLFOCLF_01424	1.77e-237	-	-	-	I	-	-	-	Alpha beta
CLLFOCLF_01425	0.0	qacA	-	-	EGP	-	-	-	Major Facilitator
CLLFOCLF_01426	4.49e-151	-	3.2.2.27	-	L	ko:K21929	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Uracil-DNA glycosylase
CLLFOCLF_01427	0.0	-	-	-	S	-	-	-	Putative threonine/serine exporter
CLLFOCLF_01428	3.43e-203	-	-	-	K	-	-	-	LysR family
CLLFOCLF_01429	3.08e-144	-	-	-	I	-	-	-	Alpha/beta hydrolase family
CLLFOCLF_01430	3.34e-195	citG	2.4.2.52	-	H	ko:K05966	ko02020,map02020	ko00000,ko00001,ko01000	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
CLLFOCLF_01431	0.0	citF	2.8.3.10	-	H	ko:K01643	ko02020,map02020	ko00000,ko00001,ko01000	Citrate (pro-3S)-lyase alpha chain
CLLFOCLF_01432	3.29e-204	citE	4.1.3.34	-	G	ko:K01644	ko02020,map02020	ko00000,ko00001,ko01000	Belongs to the HpcH HpaI aldolase family
CLLFOCLF_01433	2.56e-56	citD	-	-	C	ko:K01646	ko02020,map02020	ko00000,ko00001	Covalent carrier of the coenzyme of citrate lyase
CLLFOCLF_01434	6.6e-188	citC	6.2.1.22	-	H	ko:K01910	ko02020,map02020	ko00000,ko00001,ko01000	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
CLLFOCLF_01435	9.44e-223	mae	1.1.1.38	-	C	ko:K00027	ko00620,ko01200,ko02020,map00620,map01200,map02020	ko00000,ko00001,ko01000	Malic enzyme, NAD binding domain
CLLFOCLF_01436	9.08e-158	citR	-	-	K	-	-	-	sugar-binding domain protein
CLLFOCLF_01437	2.64e-283	citP	-	-	P	ko:K03319	-	ko00000	Sodium:sulfate symporter transmembrane region
CLLFOCLF_01438	1.52e-164	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLLFOCLF_01439	0.0	frdA	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
CLLFOCLF_01440	0.0	fumC	4.2.1.2	-	C	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	ko00000,ko00001,ko00002,ko01000	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
CLLFOCLF_01441	0.0	mleS	1.1.1.38, 4.1.1.101	-	C	ko:K00027,ko:K22212	ko00620,ko01120,ko01200,ko02020,map00620,map01120,map01200,map02020	ko00000,ko00001,ko01000	Malic enzyme
CLLFOCLF_01442	1.44e-202	mleR	-	-	K	-	-	-	LysR family
CLLFOCLF_01443	6.76e-143	ppiB	5.2.1.8	-	G	ko:K03768	-	ko00000,ko01000,ko03110	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CLLFOCLF_01444	3.17e-262	adh	1.1.1.1	-	C	ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	Zinc-binding alcohol dehydrogenase family protein
CLLFOCLF_01445	1.76e-286	-	-	-	L	-	-	-	PFAM plasmid pRiA4b ORF-3 family protein
CLLFOCLF_01446	3.46e-38	-	-	-	L	-	-	-	PFAM plasmid pRiA4b ORF-3 family protein
CLLFOCLF_01447	8.07e-07	-	-	-	L	-	-	-	PFAM plasmid pRiA4b ORF-3 family protein
CLLFOCLF_01448	3.68e-214	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLLFOCLF_01449	0.0	-	-	-	S	ko:K13730	ko05100,map05100	ko00000,ko00001	Uncharacterized protein conserved in bacteria (DUF2252)
CLLFOCLF_01450	5.7e-30	-	-	-	-	-	-	-	-
CLLFOCLF_01451	7.11e-253	galM	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of alpha and beta anomers of maltose
CLLFOCLF_01452	4.24e-94	-	-	-	-	-	-	-	-
CLLFOCLF_01453	3.8e-292	dacA	3.4.16.4	-	M	ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
CLLFOCLF_01454	1.67e-179	-	-	-	V	-	-	-	Beta-lactamase enzyme family
CLLFOCLF_01455	0.0	gtfA	2.4.1.7	GH13	G	ko:K00690	ko00500,map00500	ko00000,ko00001,ko01000	Sucrose glucosyltransferase
CLLFOCLF_01456	1.09e-275	-	-	-	EGP	-	-	-	Transporter, major facilitator family protein
CLLFOCLF_01457	0.0	arcT	-	-	E	-	-	-	Dipeptidase
CLLFOCLF_01458	1.69e-155	arcD	-	-	S	-	-	-	C4-dicarboxylate anaerobic carrier
CLLFOCLF_01459	2.46e-172	isp	-	-	L	-	-	-	Transposase
CLLFOCLF_01460	9.03e-229	ywbN	-	-	P	ko:K07223,ko:K16301	-	ko00000,ko01000,ko02000	Peroxidase
CLLFOCLF_01461	7.42e-118	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
CLLFOCLF_01462	1.96e-146	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
CLLFOCLF_01463	1.02e-171	-	-	-	I	-	-	-	alpha/beta hydrolase fold
CLLFOCLF_01464	2.77e-228	-	-	-	S	-	-	-	Conserved hypothetical protein 698
CLLFOCLF_01465	3.6e-109	-	-	-	S	-	-	-	NADPH-dependent FMN reductase
CLLFOCLF_01466	1.13e-217	mccA	2.5.1.134, 2.5.1.47	-	E	ko:K01738,ko:K17216	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the cysteine synthase cystathionine beta- synthase family
CLLFOCLF_01467	1.56e-227	hemH	4.99.1.1, 4.99.1.9	-	H	ko:K01772	ko00860,ko01100,ko01110,map00860,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the ferrous insertion into protoporphyrin IX
CLLFOCLF_01468	2.68e-293	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
CLLFOCLF_01469	1.12e-112	-	-	-	Q	-	-	-	Methyltransferase
CLLFOCLF_01470	2.68e-150	ktrA	-	-	P	ko:K03499	-	ko00000,ko02000	domain protein
CLLFOCLF_01471	1.94e-304	ktrB	-	-	P	ko:K03498	-	ko00000,ko02000	Potassium uptake protein
CLLFOCLF_01472	0.0	mycA	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
CLLFOCLF_01473	1.32e-295	potE	-	-	U	ko:K03756,ko:K03758	-	ko00000,ko02000	Amino acid permease
CLLFOCLF_01474	0.0	arcD	-	-	E	ko:K03758	-	ko00000,ko02000	Arginine ornithine antiporter
CLLFOCLF_01475	6.17e-104	argR	-	-	K	ko:K03402	-	ko00000,ko03000	Regulates arginine biosynthesis genes
CLLFOCLF_01476	4.81e-293	arcA	3.5.3.6	-	E	ko:K01478	ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130	ko00000,ko00001,ko01000	Arginine
CLLFOCLF_01477	2.49e-232	ampC	-	-	V	-	-	-	Beta-lactamase
CLLFOCLF_01478	1.82e-69	-	-	-	-	-	-	-	-
CLLFOCLF_01479	3.33e-177	isp	-	-	L	-	-	-	Transposase
CLLFOCLF_01480	8.58e-192	-	-	-	M	-	-	-	domain protein
CLLFOCLF_01481	0.0	-	-	-	M	-	-	-	domain protein
CLLFOCLF_01482	2.84e-136	-	-	-	-	-	-	-	-
CLLFOCLF_01484	1.05e-96	nhaP3	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
CLLFOCLF_01485	1.81e-188	nhaP3	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
CLLFOCLF_01486	1.5e-74	-	-	-	-	-	-	-	-
CLLFOCLF_01488	6.11e-111	-	-	-	-	-	-	-	-
CLLFOCLF_01489	0.0	copA	3.6.3.3, 3.6.3.5, 3.6.3.54	-	P	ko:K01534,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	P-type ATPase
CLLFOCLF_01490	4.39e-71	-	-	-	S	-	-	-	Cupredoxin-like domain
CLLFOCLF_01491	7.03e-134	XK27_08875	-	-	O	-	-	-	PFAM peptidase M10A and M12B, matrixin and adamalysin
CLLFOCLF_01492	7.7e-202	-	-	-	EG	-	-	-	EamA-like transporter family
CLLFOCLF_01493	3.94e-221	arcC	2.7.2.2	-	E	ko:K00926	ko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200	ko00000,ko00001,ko01000	Belongs to the carbamate kinase family
CLLFOCLF_01494	9.21e-244	argF	2.1.3.3	-	E	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CLLFOCLF_01495	1.06e-198	-	-	-	KT	ko:K07719	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	YcbB domain
CLLFOCLF_01496	3.42e-41	xylB	2.7.1.17, 2.7.1.53	-	G	ko:K00854,ko:K00880	ko00040,ko00053,ko01100,map00040,map00053,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the FGGY kinase family
CLLFOCLF_01498	0.0	pgi	5.3.1.9	-	G	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the GPI family
CLLFOCLF_01499	1.07e-138	maa3	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
CLLFOCLF_01500	2.14e-197	-	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
CLLFOCLF_01501	0.0	yclK	-	-	T	-	-	-	Histidine kinase
CLLFOCLF_01502	2.81e-174	yclJ	-	-	K	ko:K02483	-	ko00000,ko02022	response regulator
CLLFOCLF_01504	6.22e-107	lytE	-	-	M	-	-	-	Lysin motif
CLLFOCLF_01505	6.2e-103	-	-	-	K	-	-	-	Transcriptional regulator
CLLFOCLF_01506	0.0	oatA	-	-	I	-	-	-	Acyltransferase
CLLFOCLF_01507	3e-69	-	-	-	-	-	-	-	-
CLLFOCLF_01508	0.0	glmS	2.6.1.16	-	M	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	ko00000,ko00001,ko01000,ko01002	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
CLLFOCLF_01509	0.0	glmM	5.4.2.10	-	G	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko01000	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CLLFOCLF_01510	5.7e-165	ybbR	-	-	S	-	-	-	YbbR-like protein
CLLFOCLF_01511	6.61e-195	dacA	2.7.7.85	-	S	ko:K18672	-	ko00000,ko01000	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CLLFOCLF_01512	0.0	fucP	-	-	G	ko:K02429	-	ko00000,ko02000	Major Facilitator Superfamily
CLLFOCLF_01513	8.28e-87	rbsD	5.4.99.62	-	G	ko:K06726	ko02010,map02010	ko00000,ko00001,ko01000	Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose
CLLFOCLF_01514	5.49e-210	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLLFOCLF_01515	3.22e-214	murB	1.3.1.98	-	M	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation
CLLFOCLF_01516	3.7e-133	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
CLLFOCLF_01517	1.45e-98	XK27_04775	-	-	S	ko:K09155	-	ko00000	PAS domain
CLLFOCLF_01518	4.36e-114	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLLFOCLF_01519	9.26e-105	ydiB	-	-	O	ko:K06925	-	ko00000,ko03016	Hydrolase, P-loop family
CLLFOCLF_01520	1.14e-227	pta	2.3.1.8, 3.6.3.21	-	C	ko:K00625,ko:K02028	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000,ko02000	phosphate acetyltransferase
CLLFOCLF_01521	4.35e-173	ung	3.2.2.27	-	L	ko:K03648	ko03410,ko05340,map03410,map05340	ko00000,ko00001,ko01000,ko03400	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CLLFOCLF_01522	3.91e-136	-	-	-	-	-	-	-	-
CLLFOCLF_01523	7.73e-109	smpB	-	-	J	ko:K03664	-	ko00000	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
CLLFOCLF_01524	0.0	rnr	-	-	J	ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko03016,ko03019	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
CLLFOCLF_01525	1.5e-183	est	3.1.1.1	-	S	ko:K03928	-	ko00000,ko01000	Serine aminopeptidase, S33
CLLFOCLF_01526	1.43e-47	secG	-	-	U	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
CLLFOCLF_01527	0.0	eriC	-	-	P	ko:K03281	-	ko00000	chloride
CLLFOCLF_01528	0.0	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
CLLFOCLF_01529	0.0	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
CLLFOCLF_01530	1.45e-181	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
CLLFOCLF_01531	1.04e-287	pgk	2.7.2.3	-	F	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the phosphoglycerate kinase family
CLLFOCLF_01532	1.31e-243	gap	1.2.1.12	-	G	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
CLLFOCLF_01534	4.72e-134	clpP	3.4.21.92	-	O	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
CLLFOCLF_01535	1.83e-21	-	-	-	-	-	-	-	-
CLLFOCLF_01537	1.59e-217	whiA	-	-	K	ko:K09762	-	ko00000	May be required for sporulation
CLLFOCLF_01538	9.5e-238	yvcK	-	-	S	-	-	-	Required for morphogenesis under gluconeogenic growth conditions
CLLFOCLF_01539	7.72e-206	yvcJ	-	-	S	ko:K06958	-	ko00000,ko03019	Displays ATPase and GTPase activities
CLLFOCLF_01540	4.5e-315	steT	-	-	E	ko:K03294	-	ko00000	amino acid
CLLFOCLF_01541	0.0	uvrA	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
CLLFOCLF_01542	0.0	uvrB	-	-	L	ko:K03702	ko03420,map03420	ko00000,ko00001,ko03400	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
CLLFOCLF_01543	1.03e-19	-	-	-	-	-	-	-	-
CLLFOCLF_01544	1.45e-149	yfbR	-	-	S	ko:K07023	-	ko00000	HD containing hydrolase-like enzyme
CLLFOCLF_01545	0.0	pgm	5.4.2.2	-	G	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
CLLFOCLF_01546	9.93e-115	ykhA	3.1.2.20	-	I	ko:K01073	-	ko00000,ko01000	Thioesterase superfamily
CLLFOCLF_01547	4.03e-206	-	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	PFAM extracellular solute-binding protein, family 3
CLLFOCLF_01548	1.06e-258	-	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
CLLFOCLF_01549	9.67e-222	trxB	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
CLLFOCLF_01550	1.12e-214	lutA	-	-	C	ko:K18928	-	ko00000	Cysteine-rich domain
CLLFOCLF_01551	0.0	lutB	-	-	C	ko:K18929	-	ko00000	4Fe-4S dicluster domain
CLLFOCLF_01552	4.31e-176	lutC	-	-	S	ko:K00782	-	ko00000	LUD domain
CLLFOCLF_01553	1.09e-215	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
CLLFOCLF_01554	9.42e-234	gpsA	1.1.1.94	-	I	ko:K00057	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	Glycerol-3-phosphate dehydrogenase
CLLFOCLF_01555	9.5e-200	lgt	-	-	M	ko:K13292	-	ko00000,ko01000	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CLLFOCLF_01556	3.96e-226	hprK	-	-	F	ko:K06023	-	ko00000,ko01000	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CLLFOCLF_01557	1.88e-68	yvlD	-	-	S	ko:K08972	-	ko00000	Mycobacterial 4 TMS phage holin, superfamily IV
CLLFOCLF_01558	4.27e-66	-	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	PspC domain protein
CLLFOCLF_01559	9.13e-238	prfB	-	-	J	ko:K02836	-	ko00000,ko03012	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CLLFOCLF_01560	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
CLLFOCLF_01561	3.01e-125	hpf	-	-	J	ko:K05808	-	ko00000,ko03009	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CLLFOCLF_01562	4.08e-147	comFC	-	-	S	ko:K02242	-	ko00000,ko00002,ko02044	Competence protein
CLLFOCLF_01563	0.0	comFA	-	-	L	ko:K02240	-	ko00000,ko00002,ko02044	Helicase C-terminal domain protein
CLLFOCLF_01564	1.44e-139	yvyE	3.4.13.9	-	S	ko:K01271	-	ko00000,ko01000,ko01002	YigZ family
CLLFOCLF_01565	5.95e-46	-	-	-	EGP	-	-	-	Major Facilitator
CLLFOCLF_01566	2.35e-193	-	-	-	EGP	-	-	-	Major Facilitator
CLLFOCLF_01567	2.53e-88	-	-	-	K	-	-	-	Transcriptional regulator
CLLFOCLF_01568	1.53e-52	-	-	-	-	-	-	-	-
CLLFOCLF_01569	0.0	ydaO	-	-	E	-	-	-	amino acid
CLLFOCLF_01570	0.0	-	-	-	E	-	-	-	amino acid
CLLFOCLF_01571	7.03e-103	-	-	-	S	ko:K19055	-	ko00000,ko01000,ko03016	Aminoacyl-tRNA editing domain
CLLFOCLF_01572	0.0	groL	-	-	O	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
CLLFOCLF_01573	1.83e-59	groS	-	-	O	ko:K04078	-	ko00000,ko03029,ko03110	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CLLFOCLF_01575	4.67e-147	rex	-	-	K	ko:K01926	-	ko00000,ko03000	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
CLLFOCLF_01576	0.0	ydiF	-	-	S	ko:K06158	-	ko00000,ko03012	ABC transporter, ATP-binding protein
CLLFOCLF_01577	4.85e-232	ykpB	1.1.1.169	-	H	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLLFOCLF_01578	5.13e-288	mtnE	-	-	E	ko:K08969	ko00270,ko01100,map00270,map01100	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLLFOCLF_01579	7.09e-179	mtnU	3.5.1.3	-	S	ko:K13566	ko00250,map00250	ko00000,ko00001,ko01000	Carbon-nitrogen hydrolase
CLLFOCLF_01580	1.48e-176	proB	2.7.2.11	-	F	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CLLFOCLF_01581	8.21e-287	proA	1.2.1.41	-	E	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CLLFOCLF_01582	1.47e-169	proC	1.5.1.2	-	E	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CLLFOCLF_01583	1.13e-248	tsaD	2.3.1.234	-	J	ko:K01409	-	ko00000,ko01000,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CLLFOCLF_01584	1.89e-129	rimI	2.3.1.128	-	K	ko:K03789	-	ko00000,ko01000,ko03009	Ribosomal-protein-alanine acetyltransferase
CLLFOCLF_01585	2.56e-162	yeaZ	2.3.1.234	-	O	ko:K01409,ko:K14742	-	ko00000,ko01000,ko03016	Universal bacterial protein YeaZ
CLLFOCLF_01586	2.35e-244	galE	5.1.3.2	-	M	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family
CLLFOCLF_01587	7.29e-219	ppx	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
CLLFOCLF_01588	0.0	ppk	2.7.4.1	-	P	ko:K00937	ko00190,ko03018,map00190,map03018	ko00000,ko00001,ko01000,ko03019	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CLLFOCLF_01589	0.0	ppx3	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
CLLFOCLF_01590	4.11e-174	fat	3.1.2.21	-	I	ko:K01071	ko00061,ko01100,map00061,map01100	ko00000,ko00001,ko01000,ko01004	Acyl-ACP thioesterase
CLLFOCLF_01591	1.24e-197	rsmI	2.1.1.198	-	H	ko:K07056	-	ko00000,ko01000,ko03009	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CLLFOCLF_01592	1.77e-74	yabA	-	-	L	-	-	-	Involved in initiation control of chromosome replication
CLLFOCLF_01593	1.68e-231	holB	2.7.7.7	-	L	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
CLLFOCLF_01594	1.64e-68	yaaQ	-	-	S	-	-	-	Cyclic-di-AMP receptor
CLLFOCLF_01595	3.41e-144	tmk	2.7.4.9	-	F	ko:K00943	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CLLFOCLF_01596	2.71e-51	-	-	-	S	-	-	-	Protein of unknown function (DUF2508)
CLLFOCLF_01597	1.65e-140	recR	-	-	L	ko:K06187	ko03440,map03440	ko00000,ko00001,ko03400	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CLLFOCLF_01598	5.87e-62	yaaK	-	-	S	ko:K09747	-	ko00000	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CLLFOCLF_01599	0.0	dnaX	2.7.7.7	-	L	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLLFOCLF_01600	1.16e-114	tadA	3.5.4.33	-	F	ko:K11991	-	ko00000,ko01000,ko03016	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
CLLFOCLF_01601	9.33e-48	nrdH	-	-	O	ko:K06191	-	ko00000	Glutaredoxin
CLLFOCLF_01602	0.0	nrdE	1.17.4.1	-	F	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLLFOCLF_01603	7.68e-254	nrdF	1.17.4.1	-	F	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLLFOCLF_01604	0.0	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
CLLFOCLF_01605	1.32e-169	-	-	-	S	ko:K11621	ko02020,map02020	ko00000,ko00001	Putative adhesin
CLLFOCLF_01606	1.14e-128	-	-	-	S	-	-	-	Protein of unknown function (DUF1700)
CLLFOCLF_01607	2.79e-75	XK27_06915	-	-	K	ko:K10947	-	ko00000,ko03000	transcriptional regulator PadR family
CLLFOCLF_01608	3.29e-62	mscL	-	-	M	ko:K03282	-	ko00000,ko02000	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
CLLFOCLF_01610	8.34e-65	-	-	-	-	-	-	-	-
CLLFOCLF_01611	2.46e-72	rplL	-	-	J	ko:K02935	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
CLLFOCLF_01612	3.6e-107	rplJ	-	-	J	ko:K02864	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CLLFOCLF_01613	1.36e-212	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
CLLFOCLF_01614	1.21e-284	aadAT	-	-	EK	ko:K05825	ko00300,ko01100,ko01130,ko01210,map00300,map01100,map01130,map01210	ko00000,ko00001,ko01000	Aminotransferase, class I
CLLFOCLF_01615	8.31e-158	rplA	-	-	J	ko:K02863	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
CLLFOCLF_01616	1.39e-92	rplK	-	-	J	ko:K02867	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CLLFOCLF_01617	1.1e-126	nusG	-	-	K	ko:K02601	-	ko00000,ko03009,ko03021	Participates in transcription elongation, termination and antitermination
CLLFOCLF_01618	7.11e-32	secE	-	-	U	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
CLLFOCLF_01619	9.18e-31	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
CLLFOCLF_01620	1.82e-175	trmH	2.1.1.185	-	J	ko:K03218	-	ko00000,ko01000,ko03009	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLLFOCLF_01621	3.58e-93	mrnC	-	-	J	ko:K11145	-	ko00000,ko01000,ko03009	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
CLLFOCLF_01622	0.0	cysS	6.1.1.16	-	J	ko:K01883	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
CLLFOCLF_01623	5.49e-262	yacL	-	-	S	-	-	-	domain protein
CLLFOCLF_01624	0.0	radA	-	-	O	ko:K04485	-	ko00000,ko03400	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CLLFOCLF_01625	8.07e-128	dut	3.6.1.23	-	F	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	dUTP diphosphatase
CLLFOCLF_01626	4.04e-67	yjdJ	-	-	S	ko:K06975	-	ko00000	GCN5-related N-acetyl-transferase
CLLFOCLF_01627	2.92e-161	rpiA	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CLLFOCLF_01628	0.0	pepC	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
CLLFOCLF_01629	3.37e-178	tcyA	-	-	ET	ko:K02424	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko02035	Belongs to the bacterial solute-binding protein 3 family
CLLFOCLF_01630	4.11e-172	-	-	-	E	ko:K10010	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_01631	3.36e-154	tcyB	-	-	E	ko:K10009	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLLFOCLF_01632	6.07e-274	mccB	4.4.1.1, 4.4.1.2, 4.4.1.8	-	E	ko:K01760,ko:K17217	ko00260,ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00260,map00270,map00450,map00920,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	cystathionine
CLLFOCLF_01633	6.02e-214	-	-	-	I	-	-	-	alpha/beta hydrolase fold
CLLFOCLF_01634	1.02e-170	gpmA1	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CLLFOCLF_01635	0.0	-	-	-	S	-	-	-	Bacterial membrane protein, YfhO
CLLFOCLF_01636	3.71e-235	lacM	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	beta-galactosidase
CLLFOCLF_01637	0.0	lacL	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
CLLFOCLF_01639	1.78e-106	ydcK	-	-	S	ko:K03095	-	ko00000	Belongs to the SprT family
CLLFOCLF_01640	0.0	tex	-	-	K	ko:K06959	-	ko00000	Tex-like protein N-terminal domain protein
CLLFOCLF_01641	2.15e-196	nadE	6.3.1.5	-	F	ko:K01916	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
CLLFOCLF_01642	0.0	pncB	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CLLFOCLF_01643	2.05e-164	yvoA_2	-	-	K	ko:K03710	-	ko00000,ko03000	UbiC transcription regulator-associated domain protein
CLLFOCLF_01644	3.53e-168	racX	5.1.1.13	-	M	ko:K01779	ko00250,ko01054,map00250,map01054	ko00000,ko00001,ko01000	Belongs to the aspartate glutamate racemases family
CLLFOCLF_01645	0.0	-	-	-	P	ko:K07085	-	ko00000	Predicted Permease Membrane Region
CLLFOCLF_01646	3.57e-316	-	-	-	EGP	-	-	-	Major Facilitator
CLLFOCLF_01647	1.09e-143	-	-	-	-	-	-	-	-
CLLFOCLF_01650	4.13e-190	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
CLLFOCLF_01651	0.0	dtpT	-	-	U	ko:K03305	-	ko00000	amino acid peptide transporter
CLLFOCLF_01654	1.59e-10	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
CLLFOCLF_01656	6.57e-151	-	-	-	L	-	-	-	Integrase core domain
CLLFOCLF_01657	5e-142	-	-	-	L	-	-	-	Bacterial dnaA protein
CLLFOCLF_01658	1.33e-174	-	-	-	S	-	-	-	Alpha beta hydrolase
CLLFOCLF_01659	8.03e-277	dacA	3.4.16.4	-	M	ko:K01286,ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
CLLFOCLF_01660	1.46e-126	-	-	-	-	-	-	-	-
CLLFOCLF_01662	8.11e-159	-	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
CLLFOCLF_01663	0.0	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
CLLFOCLF_01664	2.05e-140	nnrE	5.1.99.6	-	H	ko:K17759	-	ko00000,ko01000	Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX
CLLFOCLF_01665	1.41e-88	-	-	-	-	-	-	-	-
CLLFOCLF_01666	1.96e-311	hisS	6.1.1.21	-	J	ko:K01892	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	histidyl-tRNA synthetase
CLLFOCLF_01667	6.08e-274	yttB	-	-	EGP	-	-	-	Major Facilitator
CLLFOCLF_01668	4.7e-143	-	-	-	-	-	-	-	-
CLLFOCLF_01669	2.6e-33	-	-	-	-	-	-	-	-
CLLFOCLF_01670	1.8e-219	scrR	-	-	K	ko:K02529,ko:K03484	-	ko00000,ko03000	Transcriptional regulator, LacI family
CLLFOCLF_01671	7.32e-317	-	3.2.1.17	CBM50	NU	ko:K01185,ko:K02395,ko:K19223	-	ko00000,ko01000,ko01002,ko01011,ko02035	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CLLFOCLF_01672	8.23e-66	czrA	-	-	K	ko:K22043	-	ko00000,ko03000	Transcriptional regulator, ArsR family
CLLFOCLF_01673	1.61e-48	-	-	-	-	-	-	-	-
CLLFOCLF_01674	0.0	yhcA	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_01675	1.37e-151	lolD	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_01676	3.54e-220	yxeA	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
CLLFOCLF_01677	8.43e-110	-	-	-	K	-	-	-	transcriptional regulator (TetR family)
CLLFOCLF_01678	7.01e-244	-	-	-	E	-	-	-	Zinc-binding dehydrogenase
CLLFOCLF_01679	0.0	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
CLLFOCLF_01680	2.57e-68	-	-	-	-	-	-	-	-
CLLFOCLF_01681	0.0	thrS	6.1.1.3	-	J	ko:K01868	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CLLFOCLF_01683	6e-272	yxiO	-	-	S	ko:K06902	ko04138,map04138	ko00000,ko00001,ko02000,ko04131	Vacuole effluxer Atg22 like
CLLFOCLF_01684	1.09e-63	npp	-	-	S	-	-	-	type I phosphodiesterase nucleotide pyrophosphatase
CLLFOCLF_01685	6.99e-165	npp	-	-	S	-	-	-	type I phosphodiesterase nucleotide pyrophosphatase
CLLFOCLF_01686	4.67e-313	-	-	-	E	ko:K03294	-	ko00000	amino acid
CLLFOCLF_01687	9.04e-152	panE	1.1.1.169	-	H	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLLFOCLF_01688	8.95e-20	panE	1.1.1.169	-	H	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLLFOCLF_01689	4.09e-96	-	-	-	S	ko:K02348	-	ko00000	Gnat family
CLLFOCLF_01690	1.11e-156	-	-	-	GM	-	-	-	NmrA-like family
CLLFOCLF_01691	1.07e-66	ydeP	-	-	K	-	-	-	Transcriptional regulator, HxlR family
CLLFOCLF_01692	6.45e-138	XK27_02070	-	-	S	ko:K07078	-	ko00000	Nitroreductase family
CLLFOCLF_01693	1.25e-106	-	-	-	K	-	-	-	Transcriptional regulator, HxlR family
CLLFOCLF_01694	1.24e-295	-	-	-	-	-	-	-	-
CLLFOCLF_01695	2.18e-268	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
CLLFOCLF_01696	0.0	pepE	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
CLLFOCLF_01697	9.37e-142	-	-	-	GM	-	-	-	NAD dependent epimerase dehydratase family protein
CLLFOCLF_01698	0.0	pepN	3.4.11.2	-	E	ko:K01256	ko00480,ko01100,map00480,map01100	ko00000,ko00001,ko01000,ko01002	aminopeptidase
CLLFOCLF_01699	1.86e-63	ywnA	-	-	K	-	-	-	Transcriptional regulator
CLLFOCLF_01700	1.64e-32	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
CLLFOCLF_01701	2.03e-252	asnA	6.3.1.1	-	F	ko:K01914	ko00250,ko00460,ko01100,ko01110,ko01230,map00250,map00460,map01100,map01110,map01230	ko00000,ko00001,ko01000	aspartate--ammonia ligase
CLLFOCLF_01702	0.0	asnS	6.1.1.22	-	J	ko:K01893	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Asparaginyl-tRNA synthetase
CLLFOCLF_01703	2.98e-33	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLLFOCLF_01704	2.72e-164	-	-	-	F	-	-	-	glutamine amidotransferase
CLLFOCLF_01705	6.31e-79	-	-	-	-	-	-	-	-
CLLFOCLF_01706	1.65e-128	qorB	1.6.5.2	-	GM	ko:K19267	ko00130,ko01110,map00130,map01110	ko00000,ko00001,ko01000	NmrA-like family
CLLFOCLF_01707	8.78e-194	akr5f	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
CLLFOCLF_01708	3.33e-187	-	-	-	K	-	-	-	Transcriptional regulator
CLLFOCLF_01709	4.01e-235	ansA	3.5.1.1	-	EJ	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110	ko00000,ko00001,ko01000	L-asparaginase, type I
CLLFOCLF_01710	1.45e-214	ypuA	-	-	S	-	-	-	Protein of unknown function (DUF1002)
CLLFOCLF_01711	1.65e-219	hdhL	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
CLLFOCLF_01712	6.93e-195	mhpD	-	-	Q	ko:K02509	ko00350,ko01120,map00350,map01120	ko00000,ko00001,ko01000	hydratase
CLLFOCLF_01713	8.21e-153	-	-	-	S	-	-	-	Alpha beta hydrolase
CLLFOCLF_01714	1.02e-82	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
CLLFOCLF_01715	5.01e-104	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
CLLFOCLF_01716	1.15e-271	-	-	-	T	-	-	-	GHKL domain
CLLFOCLF_01717	4e-141	-	-	-	T	-	-	-	Transcriptional regulatory protein, C terminal
CLLFOCLF_01718	2.76e-23	-	-	-	H	-	-	-	RibD C-terminal domain
CLLFOCLF_01720	1.17e-246	flp	-	-	V	-	-	-	Beta-lactamase
CLLFOCLF_01721	2.49e-122	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLLFOCLF_01722	8.66e-134	-	-	-	S	ko:K07507	-	ko00000,ko02000	MgtC family
CLLFOCLF_01723	3.53e-18	-	-	-	S	-	-	-	GyrI-like small molecule binding domain
CLLFOCLF_01725	5.14e-145	-	-	-	S	-	-	-	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
CLLFOCLF_01726	1.58e-66	azlD	-	-	E	-	-	-	Branched-chain amino acid transport
CLLFOCLF_01727	7.24e-76	azlC	-	-	E	-	-	-	azaleucine resistance protein AzlC
CLLFOCLF_01728	2.73e-111	-	-	-	L	ko:K07491	-	ko00000	PFAM transposase IS200-family protein
CLLFOCLF_01729	2.58e-62	azlC	-	-	E	-	-	-	azaleucine resistance protein AzlC
CLLFOCLF_01730	0.0	-	-	-	K	-	-	-	Aminotransferase class I and II
CLLFOCLF_01731	9.57e-34	-	-	-	S	-	-	-	amidohydrolase
CLLFOCLF_01732	1.15e-62	-	-	-	S	-	-	-	amidohydrolase
CLLFOCLF_01733	1.42e-117	-	2.3.1.183	-	M	ko:K03823	ko00440,ko01130,map00440,map01130	ko00000,ko00001,ko01000	Acetyltransferase, GNAT family
CLLFOCLF_01734	3.47e-147	lepB	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
CLLFOCLF_01735	4.26e-314	yxbA	6.3.1.12	-	S	ko:K17810	-	ko00000,ko01000	ATP-grasp enzyme
CLLFOCLF_01736	0.0	murE	6.3.2.13, 6.3.2.7	-	M	ko:K01928,ko:K05362	ko00300,ko00550,ko01100,map00300,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CLLFOCLF_01737	0.0	asnB	6.3.5.4	-	E	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	ko00000,ko00001,ko01000,ko01002	Asparagine synthase
CLLFOCLF_01738	0.0	gidA	-	-	D	ko:K03495	-	ko00000,ko03016,ko03036	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
CLLFOCLF_01739	0.0	mnmE	-	-	S	ko:K03650	-	ko00000,ko01000,ko03016	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CLLFOCLF_01740	8.52e-168	jag	-	-	S	ko:K06346	-	ko00000	R3H domain protein
CLLFOCLF_01741	1.21e-171	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
CLLFOCLF_01742	5.68e-76	rnpA	3.1.26.5	-	J	ko:K03536	-	ko00000,ko01000,ko03016	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
CLLFOCLF_01743	7.96e-21	rpmH	-	-	J	ko:K02914	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL34 family
CLLFOCLF_01744	0.0	dnaA	-	-	L	ko:K02313	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko03032,ko03036	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CLLFOCLF_01745	2.23e-260	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
CLLFOCLF_01746	1.09e-46	yaaA	-	-	S	ko:K14761	-	ko00000,ko03009	S4 domain protein YaaA
CLLFOCLF_01747	9.43e-259	recF	-	-	L	ko:K03629	ko03440,map03440	ko00000,ko00001,ko03400	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CLLFOCLF_01748	0.0	gyrB	5.99.1.3	-	L	ko:K02470	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLLFOCLF_01749	0.0	gyrA	5.99.1.3	-	L	ko:K02469	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLLFOCLF_01750	4.55e-64	rpsF	-	-	J	ko:K02990	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Binds together with S18 to 16S ribosomal RNA
CLLFOCLF_01751	1.2e-113	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
CLLFOCLF_01752	9.36e-48	rpsR	-	-	J	ko:K02963	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CLLFOCLF_01753	1.7e-95	deoC	4.1.2.4	-	F	ko:K01619	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CLLFOCLF_01754	1.73e-128	deoR	-	-	K	ko:K05346	-	ko00000,ko03000	sugar-binding domain protein
CLLFOCLF_01755	0.0	yybT	-	-	T	-	-	-	signaling protein consisting of a modified GGDEF domain and a DHH domain
CLLFOCLF_01756	1.25e-97	rplI	-	-	J	ko:K02939	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
CLLFOCLF_01757	3.65e-308	dnaB	3.6.4.12	-	L	ko:K02314	ko03030,ko04112,map03030,map04112	ko00000,ko00001,ko01000,ko03032	Participates in initiation and elongation during chromosome replication
CLLFOCLF_01758	9.25e-270	yttB	-	-	EGP	-	-	-	Major Facilitator
CLLFOCLF_01759	7.71e-81	-	-	-	-	-	-	-	-
CLLFOCLF_01760	1.46e-207	-	-	-	S	-	-	-	Polyphosphate nucleotide phosphotransferase, PPK2 family
CLLFOCLF_01762	5.01e-123	-	-	-	S	-	-	-	Fic/DOC family
CLLFOCLF_01764	5.18e-94	-	-	-	K	ko:K18909	-	ko00000,ko00002,ko01504,ko03000	helix_turn_helix multiple antibiotic resistance protein
CLLFOCLF_01765	0.0	lmrA	3.6.3.44	-	V	ko:K02021,ko:K18104	ko01501,ko02010,map01501,map02010	ko00000,ko00001,ko00002,ko01000,ko01504,ko02000	ABC transporter
CLLFOCLF_01767	1.29e-168	yycF	-	-	K	ko:K07668	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator
CLLFOCLF_01768	0.0	vicK	2.7.13.3	-	T	ko:K07652	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
CLLFOCLF_01769	1.89e-312	yycH	-	-	S	-	-	-	YycH protein
CLLFOCLF_01770	4.13e-192	yycI	-	-	S	-	-	-	YycH protein
CLLFOCLF_01771	1.46e-195	vicX	3.1.26.11	-	S	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	domain protein
CLLFOCLF_01772	3.43e-282	htrA	3.4.21.107	-	O	ko:K04771	ko01503,ko02020,map01503,map02020	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	serine protease
CLLFOCLF_01773	1.04e-110	pgpA	-	-	I	-	-	-	Phosphatidylglycerophosphatase A
CLLFOCLF_01774	4.64e-229	ABC-SBP	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
CLLFOCLF_01775	2.63e-115	rlmH	2.1.1.177	-	J	ko:K00783	-	ko00000,ko01000,ko03009	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CLLFOCLF_01777	1.56e-125	-	-	-	S	-	-	-	reductase
CLLFOCLF_01778	1.08e-288	dhaT	1.1.1.202	-	C	ko:K00086	ko00561,ko00640,map00561,map00640	ko00000,ko00001,ko01000	Dehydrogenase
CLLFOCLF_01779	6.86e-98	-	-	-	O	-	-	-	OsmC-like protein
CLLFOCLF_01780	4.23e-222	ldhD	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLLFOCLF_01781	2.28e-272	-	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLLFOCLF_01782	2.49e-43	-	-	-	-	-	-	-	-
CLLFOCLF_01783	0.0	clpE	-	-	O	ko:K03697,ko:K04086	-	ko00000,ko03110	associated with various cellular activities
CLLFOCLF_01785	1.86e-134	-	-	-	K	-	-	-	PFAM GCN5-related N-acetyltransferase
CLLFOCLF_01786	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLLFOCLF_01787	0.0	rexB	3.6.4.12	-	L	ko:K16899	-	ko00000,ko01000,ko03400	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
CLLFOCLF_01788	0.0	addA	3.6.4.12	-	L	ko:K16898	-	ko00000,ko01000,ko03400	ATP-dependent helicase nuclease subunit A
CLLFOCLF_01789	3e-221	malR1	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator, LacI family
CLLFOCLF_01790	2.2e-273	atoB	1.1.1.88, 2.3.1.9	-	I	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the thiolase family
CLLFOCLF_01791	0.0	malT	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
CLLFOCLF_01792	0.0	mapA	2.4.1.8	GH65	G	ko:K00691	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	hydrolase, family 65, central catalytic
CLLFOCLF_01793	1.76e-154	pgmB	5.4.2.6	-	S	ko:K01838	ko00500,map00500	ko00000,ko00001,ko01000	beta-phosphoglucomutase
CLLFOCLF_01794	5.97e-92	-	-	-	-	-	-	-	-
CLLFOCLF_01795	1.02e-111	-	-	-	T	-	-	-	Region found in RelA / SpoT proteins
CLLFOCLF_01796	3.15e-153	dltr	-	-	K	-	-	-	response regulator
CLLFOCLF_01797	7.94e-290	sptS	-	-	T	-	-	-	Histidine kinase
CLLFOCLF_01798	0.0	gshAB	6.3.2.2	-	H	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the glutamate--cysteine ligase type 1 family
CLLFOCLF_01799	6.13e-175	puuD	-	-	S	ko:K07010	-	ko00000,ko01002	peptidase C26
CLLFOCLF_01800	1.8e-215	-	-	-	C	-	-	-	Aldo keto reductase
CLLFOCLF_01801	0.0	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Membrane domain of glycerophosphoryl diester phosphodiesterase
CLLFOCLF_01802	6.51e-114	-	-	-	S	-	-	-	ECF-type riboflavin transporter, S component
CLLFOCLF_01803	0.0	nox	1.6.3.4	-	C	ko:K17869	-	ko00000,ko01000	NADH oxidase
CLLFOCLF_01804	2.95e-239	guaC	1.7.1.7	-	F	ko:K00364	ko00230,map00230	ko00000,ko00001,ko01000	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
CLLFOCLF_01805	0.0	purA	6.3.4.4	-	F	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CLLFOCLF_01806	5.46e-118	-	-	-	-	-	-	-	-
CLLFOCLF_01807	4.65e-123	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CLLFOCLF_01809	8.95e-18	-	-	-	E	-	-	-	amino acid
CLLFOCLF_01810	2.53e-17	-	-	-	K	-	-	-	Transcriptional regulator, TetR family
CLLFOCLF_01811	2.18e-94	-	-	-	K	-	-	-	Transcriptional regulator, TetR family
CLLFOCLF_01812	3.48e-94	-	-	-	-	-	-	-	-
CLLFOCLF_01813	0.0	tagE6	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
CLLFOCLF_01814	0.0	-	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Poly(Glycerol-phosphate) alpha-glucosyltransferase
CLLFOCLF_01815	0.0	sdrF	-	-	M	ko:K14194	ko05150,map05150	ko00000,ko00001	protein which possibly mediates interactions of S.aureus with components of the extracellular matrix of higher eukaryotes
CLLFOCLF_01816	7.98e-157	malL	3.2.1.10	GH13	G	ko:K01182	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
CLLFOCLF_01817	3.84e-235	-	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
CLLFOCLF_01818	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
CLLFOCLF_01819	9.89e-264	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
CLLFOCLF_01820	0.0	-	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
CLLFOCLF_01821	8.18e-224	cytR	-	-	K	ko:K02529,ko:K03604	-	ko00000,ko03000	Transcriptional regulator, LacI family
CLLFOCLF_01822	0.0	rumA_1	2.1.1.190, 2.1.1.35	-	J	ko:K00557,ko:K03215	-	ko00000,ko01000,ko03009,ko03016	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CLLFOCLF_01824	1.41e-130	-	1.5.1.36	-	S	ko:K19784,ko:K22393	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	reductase
CLLFOCLF_01825	1.12e-269	-	1.5.1.36	-	S	ko:K19784,ko:K22393,ko:K22394	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	reductase
CLLFOCLF_01826	2.3e-224	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
CLLFOCLF_01827	1.73e-52	-	-	-	L	-	-	-	Transposase
CLLFOCLF_01828	5.73e-316	serS	6.1.1.11	-	J	ko:K01875	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CLLFOCLF_01829	0.0	glnP	-	-	P	ko:K02029,ko:K02030,ko:K10036	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLLFOCLF_01830	8.05e-178	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_01831	1.24e-285	aapA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
CLLFOCLF_01832	2.4e-278	nupG	-	-	F	ko:K03317,ko:K11535,ko:K16323	-	ko00000,ko02000	Nucleoside transporter
CLLFOCLF_01833	8.26e-219	rihA	3.2.2.1	-	F	ko:K01239,ko:K01250,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	Nucleoside
CLLFOCLF_01834	6.22e-210	-	1.1.1.157	-	I	ko:K00074	ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120	ko00000,ko00001,ko01000	3-hydroxyacyl-CoA dehydrogenase
CLLFOCLF_01835	1.36e-157	rsmG	2.1.1.170	-	J	ko:K03501	-	ko00000,ko01000,ko03009,ko03036	Specifically methylates the N7 position of a guanine in 16S rRNA
CLLFOCLF_01836	3.79e-193	noc	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
CLLFOCLF_01837	8.34e-180	soj	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	Sporulation initiation inhibitor
CLLFOCLF_01838	1.38e-197	spo0J	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
CLLFOCLF_01839	2.37e-42	yyzM	-	-	S	-	-	-	Bacterial protein of unknown function (DUF951)
CLLFOCLF_01840	1.75e-254	ychF	-	-	J	ko:K06942	-	ko00000,ko03009	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
CLLFOCLF_01841	6.3e-175	-	-	-	S	-	-	-	Protein of unknown function (DUF1129)
CLLFOCLF_01842	3.97e-153	deoC	4.1.2.4	-	F	ko:K01619	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CLLFOCLF_01843	4.64e-298	deoB	5.4.2.7	-	G	ko:K01839	ko00030,ko00230,map00030,map00230	ko00000,ko00001,ko01000	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CLLFOCLF_01844	6.43e-300	pdp	2.4.2.2	-	F	ko:K00756	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	pyrimidine-nucleoside phosphorylase
CLLFOCLF_01845	5.43e-166	deoD	2.4.2.1	-	F	ko:K03784	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Purine nucleoside phosphorylase
CLLFOCLF_01846	6.79e-218	deoR	-	-	K	ko:K05346	-	ko00000,ko03000	sugar-binding domain protein
CLLFOCLF_01847	1.47e-265	guaB	1.1.1.205	-	F	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
CLLFOCLF_01848	9.76e-161	vanR	-	-	K	-	-	-	response regulator
CLLFOCLF_01849	3.73e-264	hpk31	-	-	T	-	-	-	Histidine kinase
CLLFOCLF_01850	8.37e-187	-	-	-	E	-	-	-	AzlC protein
CLLFOCLF_01851	4.05e-70	-	-	-	S	-	-	-	branched-chain amino acid
CLLFOCLF_01852	6.08e-177	-	-	-	K	-	-	-	LysR substrate binding domain
CLLFOCLF_01853	1.48e-220	pyrB	2.1.3.2	-	F	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the ATCase OTCase family
CLLFOCLF_01854	2.13e-313	pyrC	3.5.2.3	-	F	ko:K01465	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
CLLFOCLF_01855	3.93e-220	pyrD	1.3.1.14, 1.3.98.1	-	F	ko:K00226,ko:K17828	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
CLLFOCLF_01856	4.61e-166	pyrF	4.1.1.23	-	F	ko:K01591	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
CLLFOCLF_01857	1.51e-147	pyrE	2.4.2.10	-	F	ko:K00762	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CLLFOCLF_01858	2.14e-147	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
CLLFOCLF_01859	2.62e-122	ribB	3.5.4.25, 4.1.99.12	-	H	ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CLLFOCLF_01860	1.35e-290	cfa	2.1.1.79	-	M	ko:K00574	-	ko00000,ko01000	cyclopropane-fatty-acyl-phospholipid synthase
CLLFOCLF_01861	3.86e-223	ydbI	-	-	K	-	-	-	AI-2E family transporter
CLLFOCLF_01862	0.0	fhs	6.3.4.3	-	F	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the formate--tetrahydrofolate ligase family
CLLFOCLF_01863	8.15e-264	gldA	1.1.1.6	-	C	ko:K00005	ko00561,ko00640,ko01100,map00561,map00640,map01100	ko00000,ko00001,ko01000	dehydrogenase
CLLFOCLF_01864	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
CLLFOCLF_01865	5.71e-53	-	-	-	-	-	-	-	-
CLLFOCLF_01866	4.52e-160	pgm3	-	-	G	-	-	-	phosphoglycerate mutase family
CLLFOCLF_01867	1.51e-44	-	-	-	K	-	-	-	Bacterial transcriptional regulator
CLLFOCLF_01869	5.78e-58	-	-	-	IQ	-	-	-	dehydrogenase reductase
CLLFOCLF_01870	2.93e-202	-	-	-	S	-	-	-	C4-dicarboxylate anaerobic carrier
CLLFOCLF_01871	1.89e-127	-	-	-	S	-	-	-	C4-dicarboxylate anaerobic carrier
CLLFOCLF_01872	4.79e-307	pbuX	-	-	F	ko:K03458,ko:K16169	-	ko00000,ko02000	xanthine permease
CLLFOCLF_01873	0.0	pepD1	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLLFOCLF_01874	3.34e-215	corA	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
CLLFOCLF_01875	3.46e-213	rluA	5.4.99.23, 5.4.99.28, 5.4.99.29	-	J	ko:K06177,ko:K06180	-	ko00000,ko01000,ko03009,ko03016	Responsible for synthesis of pseudouridine from uracil
CLLFOCLF_01876	1.08e-168	yceF	-	-	P	ko:K05794	-	ko00000	membrane
CLLFOCLF_01877	1.3e-73	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
CLLFOCLF_01878	1.2e-299	mepA	-	-	V	ko:K18908	-	ko00000,ko00002,ko01504,ko02000	MATE efflux family protein
CLLFOCLF_01879	2.21e-72	czrA	-	-	K	ko:K22043	-	ko00000,ko03000	Transcriptional regulator, ArsR family
CLLFOCLF_01880	2.98e-123	-	-	-	P	-	-	-	Cadmium resistance transporter
CLLFOCLF_01881	5.63e-177	XK27_08845	-	-	S	ko:K05833	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_01882	1.18e-196	XK27_08840	-	-	U	ko:K05832	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
CLLFOCLF_01883	7.44e-232	ABC-SBP	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
CLLFOCLF_01884	1.46e-156	-	-	-	M	-	-	-	PFAM NLP P60 protein
CLLFOCLF_01885	2.96e-125	-	-	-	S	-	-	-	Protein of unknown function (DUF3278)
CLLFOCLF_01886	5.78e-39	-	-	-	K	ko:K07729	-	ko00000,ko03000	Helix-turn-helix domain
CLLFOCLF_01887	2.18e-66	-	-	-	L	-	-	-	Integrase
CLLFOCLF_01888	2.7e-18	XK27_09155	-	-	K	-	-	-	Transcriptional
CLLFOCLF_01889	1.31e-93	arsC	1.20.4.1	-	T	ko:K03741	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLLFOCLF_01890	1.78e-232	arsB	-	-	P	ko:K03325	-	ko00000,ko02000	Sodium Bile acid symporter family
CLLFOCLF_01892	0.0	-	-	-	S	-	-	-	ABC transporter, ATP-binding protein
CLLFOCLF_01893	8.04e-184	-	-	-	S	-	-	-	Putative ABC-transporter type IV
CLLFOCLF_01894	2.85e-135	-	-	-	NU	-	-	-	mannosyl-glycoprotein
CLLFOCLF_01895	5.41e-316	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
CLLFOCLF_01896	2.88e-290	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2325)
CLLFOCLF_01897	1.84e-262	yngD	-	-	S	ko:K07097	-	ko00000	DHHA1 domain
CLLFOCLF_01898	1.68e-64	-	-	-	-	-	-	-	-
CLLFOCLF_01899	4.78e-39	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLLFOCLF_01901	9.17e-70	-	-	-	-	-	-	-	-
CLLFOCLF_01902	1.43e-152	yrkL	-	-	S	-	-	-	Flavodoxin-like fold
CLLFOCLF_01904	2.01e-84	yeaO	-	-	S	-	-	-	Protein of unknown function, DUF488
CLLFOCLF_01905	8.15e-155	yxlJ	3.2.2.21	-	L	ko:K03652	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Belongs to the DNA glycosylase MPG family
CLLFOCLF_01906	1.2e-260	-	-	-	S	-	-	-	associated with various cellular activities
CLLFOCLF_01907	5.41e-293	-	-	-	S	-	-	-	Putative metallopeptidase domain
CLLFOCLF_01908	2.02e-62	-	-	-	-	-	-	-	-
CLLFOCLF_01909	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
CLLFOCLF_01910	1.51e-137	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLLFOCLF_01911	2.1e-113	ymdB	-	-	S	-	-	-	Macro domain protein
CLLFOCLF_01912	1.35e-248	-	-	-	EGP	-	-	-	Major Facilitator
CLLFOCLF_01913	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLLFOCLF_01914	4.22e-69	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
CLLFOCLF_01915	7.55e-213	cysK	2.5.1.47	-	E	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the cysteine synthase cystathionine beta- synthase family
CLLFOCLF_01916	1.64e-200	metA	2.3.1.46	-	E	ko:K00651	ko00270,ko00920,ko01100,ko01110,ko01230,map00270,map00920,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Transfers an acetyl group from acetyl-CoA to
CLLFOCLF_01917	0.0	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	FtsX-like permease family
CLLFOCLF_01918	2.04e-173	XK27_05695	-	-	V	ko:K02003,ko:K19083	ko02010,ko02020,map02010,map02020	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_01919	1.29e-234	kinG	-	-	T	-	-	-	Histidine kinase-like ATPases
CLLFOCLF_01920	2.7e-172	XK27_10500	-	-	K	-	-	-	response regulator
CLLFOCLF_01921	8.44e-201	yvgN	-	-	S	-	-	-	Aldo keto reductase
CLLFOCLF_01922	2.68e-173	pnuC	-	-	H	ko:K03811	-	ko00000,ko02000	nicotinamide mononucleotide transporter
CLLFOCLF_01923	2.63e-104	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
CLLFOCLF_01924	4.14e-257	-	-	-	-	-	-	-	-
CLLFOCLF_01925	1.76e-68	-	-	-	-	-	-	-	-
CLLFOCLF_01926	1.21e-48	-	-	-	-	-	-	-	-
CLLFOCLF_01927	9.21e-120	-	-	-	S	ko:K06910	-	ko00000	Phosphatidylethanolamine-binding protein
CLLFOCLF_01928	4.49e-186	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
CLLFOCLF_01929	2.69e-227	celE3	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase family
CLLFOCLF_01930	4.92e-286	galK	2.7.1.6	-	F	ko:K00849	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CLLFOCLF_01931	0.0	galT	2.7.7.12	-	G	ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	ko00000,ko00001,ko00002,ko01000	UDP-glucose--hexose-1-phosphate uridylyltransferase
CLLFOCLF_01932	1.69e-232	galR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
CLLFOCLF_01933	5.61e-292	gltT	-	-	U	ko:K03309,ko:K11102	-	ko00000,ko02000	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family
CLLFOCLF_01934	2.7e-104	-	-	-	K	ko:K03719	-	ko00000,ko03000,ko03036	AsnC family
CLLFOCLF_01935	2.71e-103	usp5	-	-	T	-	-	-	universal stress protein
CLLFOCLF_01936	2.65e-56	ltrA	-	-	S	-	-	-	Bacterial low temperature requirement A protein (LtrA)
CLLFOCLF_01937	1.62e-81	ltrA	-	-	S	-	-	-	Bacterial low temperature requirement A protein (LtrA)
CLLFOCLF_01938	0.0	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
CLLFOCLF_01939	4.67e-39	-	-	-	-	-	-	-	-
CLLFOCLF_01940	0.0	gnd	1.1.1.343, 1.1.1.44	-	H	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CLLFOCLF_01941	0.0	zwf	1.1.1.363, 1.1.1.49	-	G	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CLLFOCLF_01942	7.93e-242	yycB	-	-	P	ko:K03449	-	ko00000,ko02000	Transporter, major facilitator family protein
CLLFOCLF_01943	4.3e-96	-	-	-	S	ko:K04750	-	ko00000	3-demethylubiquinone-9 3-methyltransferase
CLLFOCLF_01944	3.16e-107	nrdI	-	-	F	ko:K03647	-	ko00000	Belongs to the NrdI family
CLLFOCLF_01945	6.23e-303	yhdP	-	-	S	-	-	-	Transporter associated domain
CLLFOCLF_01946	1.14e-197	-	-	-	V	-	-	-	(ABC) transporter
CLLFOCLF_01947	9.43e-116	-	-	-	GM	-	-	-	epimerase
CLLFOCLF_01948	5.04e-116	-	-	-	K	-	-	-	Domain of unknown function (DUF1836)
CLLFOCLF_01949	8.16e-103	yybA	-	-	K	-	-	-	Transcriptional regulator
CLLFOCLF_01950	3.53e-169	XK27_07210	-	-	S	-	-	-	B3 4 domain
CLLFOCLF_01951	4.09e-235	XK27_12525	-	-	S	-	-	-	AI-2E family transporter
CLLFOCLF_01952	8.07e-199	-	-	-	G	-	-	-	Xylose isomerase domain protein TIM barrel
CLLFOCLF_01953	8.24e-205	-	-	-	-	-	-	-	-
CLLFOCLF_01954	9.82e-173	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
CLLFOCLF_01955	4.02e-177	eutJ	-	-	E	ko:K04024	-	ko00000	Hsp70 protein
CLLFOCLF_01956	1.69e-202	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
CLLFOCLF_01957	2.33e-50	-	-	-	CQ	-	-	-	BMC
CLLFOCLF_01958	3.41e-170	pduB	-	-	E	-	-	-	BMC
CLLFOCLF_01959	0.0	pduC	4.2.1.28	-	Q	ko:K01699	ko00640,map00640	ko00000,ko00001,ko01000	Dehydratase large subunit
CLLFOCLF_01960	5e-162	pduD	4.2.1.28	-	Q	ko:K13919	ko00640,map00640	ko00000,ko00001,ko01000	Dehydratase medium subunit
CLLFOCLF_01961	8.85e-97	pduE	4.2.1.28	-	Q	ko:K13920	ko00640,map00640	ko00000,ko00001,ko01000	Dehydratase small subunit
CLLFOCLF_01962	0.0	pduG	-	-	D	-	-	-	Diol dehydratase reactivase ATPase-like domain
CLLFOCLF_01963	4.57e-60	pduH	-	-	S	-	-	-	Dehydratase medium subunit
CLLFOCLF_01964	2.67e-74	-	-	-	CQ	-	-	-	BMC
CLLFOCLF_01965	3.65e-53	pduA_2	-	-	CQ	ko:K04027	-	ko00000	BMC
CLLFOCLF_01966	1.98e-148	pduL	2.3.1.222	-	Q	ko:K13923	ko00640,map00640	ko00000,ko00001,ko01000	Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate
CLLFOCLF_01967	1.25e-103	-	-	-	S	-	-	-	Putative propanediol utilisation
CLLFOCLF_01968	5.63e-55	pduN	-	-	CQ	ko:K04028	-	ko00000	Ethanolamine utilisation protein EutN/carboxysome
CLLFOCLF_01969	2.85e-134	-	-	-	S	-	-	-	Cobalamin adenosyltransferase
CLLFOCLF_01970	1.62e-101	pduO	-	-	S	-	-	-	Haem-degrading
CLLFOCLF_01971	0.0	pduP	1.2.1.87	-	C	ko:K13922	ko00640,map00640	ko00000,ko00001,ko01000	Aldehyde dehydrogenase family
CLLFOCLF_01972	2.5e-258	pduQ	-	-	C	ko:K13921	ko00640,map00640	ko00000,ko00001	Iron-containing alcohol dehydrogenase
CLLFOCLF_01973	2.06e-277	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CLLFOCLF_01974	5.3e-71	-	-	-	E	ko:K04031	-	ko00000	BMC
CLLFOCLF_01975	1.08e-147	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Pfam:Y_phosphatase3C
CLLFOCLF_01976	1.06e-96	pgm1	-	-	G	-	-	-	phosphoglycerate mutase
CLLFOCLF_01977	3.45e-87	-	-	-	P	-	-	-	Cadmium resistance transporter
CLLFOCLF_01978	1.44e-90	eutP	-	-	E	ko:K04029	-	ko00000	Ethanolamine utilisation - propanediol utilisation
CLLFOCLF_01979	4.54e-95	ykuP	-	-	C	ko:K03839	-	ko00000	Flavodoxin
CLLFOCLF_01980	1.21e-147	nqo1	-	-	S	ko:K19784	-	ko00000	NADPH-dependent FMN reductase
CLLFOCLF_01981	1.72e-102	yvqK	2.5.1.17	-	S	ko:K00798	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko00002,ko01000	Cobalamin adenosyltransferase
CLLFOCLF_01982	2.83e-215	cobD	4.1.1.81	-	E	ko:K04720	ko00860,map00860	ko00000,ko00001,ko01000	Aminotransferase class I and II
CLLFOCLF_01983	2.22e-256	cbiA	6.3.5.11, 6.3.5.9	-	F	ko:K02224	ko00860,ko01100,ko01120,map00860,map01100,map01120	ko00000,ko00001,ko01000	Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source
CLLFOCLF_01984	4.35e-186	cobD	6.3.1.10	-	H	ko:K02227	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko00002,ko01000	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CLLFOCLF_01985	5.48e-139	cbiC	5.4.99.60, 5.4.99.61	-	H	ko:K06042	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko01000	Precorrin-8X methylmutase
CLLFOCLF_01986	1.39e-244	cbiD	2.1.1.195	-	H	ko:K02188	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko01000	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
CLLFOCLF_01987	6.19e-102	cbiE	2.1.1.289	-	H	ko:K03399	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko01000	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLLFOCLF_01988	7.05e-100	cbiT	2.1.1.196	-	H	ko:K02191	ko00860,map00860	ko00000,ko00001,ko01000	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
CLLFOCLF_01989	5.75e-165	cbiF	2.1.1.133, 2.1.1.271	-	H	ko:K05936	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko01000	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLLFOCLF_01990	3.13e-181	cbiG	3.7.1.12	-	H	ko:K02189	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko01000	Cobalamin synthesis G C-terminus
CLLFOCLF_01991	2.29e-165	cbiH	2.1.1.131	-	H	ko:K05934	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko01000	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLLFOCLF_01992	1.51e-125	cobK	1.3.1.106, 1.3.1.54	-	H	ko:K05895	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko01000	Precorrin-6x reductase CbiJ/CobK
CLLFOCLF_01993	3.44e-223	cobA	2.1.1.107, 4.2.1.75	-	H	ko:K02303,ko:K13542	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLLFOCLF_01994	1.97e-138	cbiK	4.99.1.3	-	H	ko:K02190	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko01000	Cobalt chelatase (CbiK)
CLLFOCLF_01995	5.52e-117	cbiL	2.1.1.130, 2.1.1.151	-	H	ko:K03394	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko01000	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLLFOCLF_01996	6.68e-159	cbiM	-	-	P	ko:K02007	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import
CLLFOCLF_01997	8.36e-59	cbiN	-	-	P	ko:K02009	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import
CLLFOCLF_01998	1.88e-131	cbiQ	-	-	P	ko:K02008	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Cobalt transport protein
CLLFOCLF_01999	7.19e-155	cbiO	-	-	P	ko:K02006	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	part of an ABC transporter complex. Responsible for energy coupling to the transport system
CLLFOCLF_02000	3.39e-303	cobQ	6.3.5.10	-	H	ko:K02232	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
CLLFOCLF_02001	4.7e-76	cysG	1.3.1.76, 4.99.1.4	-	H	ko:K02304	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000	Putative NAD(P)-binding
CLLFOCLF_02002	6.66e-246	hemA	1.2.1.70	-	H	ko:K02492	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CLLFOCLF_02003	6.56e-174	hemC	2.5.1.61	-	H	ko:K01749	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000	Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps
CLLFOCLF_02004	9.66e-224	hemB	4.2.1.24	-	H	ko:K01698	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000,ko04147	Delta-aminolevulinic acid dehydratase
CLLFOCLF_02005	9.62e-306	hemL	5.4.3.8	-	H	ko:K01845	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase class-III
CLLFOCLF_02006	1.41e-98	cobU	2.7.1.156, 2.7.7.62	-	H	ko:K02231	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko00002,ko01000	Cobinamide kinase / cobinamide phosphate guanyltransferase
CLLFOCLF_02007	7.33e-152	cobS	2.7.8.26	-	H	ko:K02233	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko00002,ko01000	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
CLLFOCLF_02008	4.47e-95	cobC	3.1.3.73	-	G	ko:K02226	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the phosphoglycerate mutase family
CLLFOCLF_02009	1.1e-91	-	-	-	H	-	-	-	Uroporphyrinogen-III synthase
CLLFOCLF_02010	3.2e-185	cobT	2.4.2.21	-	F	ko:K00768	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB)
CLLFOCLF_02011	1.31e-13	-	-	-	EG	-	-	-	of the drug metabolite transporter (DMT) superfamily
CLLFOCLF_02012	1.4e-21	-	-	-	EG	-	-	-	PFAM EamA-like transporter family
CLLFOCLF_02013	4.28e-66	-	-	-	S	-	-	-	Domain of unknown function (DUF4430)
CLLFOCLF_02014	4.06e-103	-	-	-	S	ko:K16927	-	ko00000,ko00002,ko02000	ECF transporter, substrate-specific component
CLLFOCLF_02015	2.8e-23	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLLFOCLF_02017	2.17e-226	ldhA	1.1.1.28	-	C	ko:K03778,ko:K18347	ko00620,ko01120,ko01502,ko02020,map00620,map01120,map01502,map02020	ko00000,ko00001,ko00002,ko01000,ko01504	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLLFOCLF_02018	1.64e-23	-	-	-	K	-	-	-	Winged helix-turn-helix DNA-binding
CLLFOCLF_02019	0.0	ycfI	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_02020	0.0	yfiC	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
CLLFOCLF_02021	0.0	rtpR	1.17.4.2	-	F	ko:K00527	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	ribonucleoside-triphosphate reductase activity
CLLFOCLF_02022	0.0	pepD2	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLLFOCLF_02023	1.85e-110	ebsC	-	-	J	ko:K03976	-	ko00000,ko01000,ko03016	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CLLFOCLF_02024	8.56e-162	gntR	-	-	K	-	-	-	UbiC transcription regulator-associated domain protein
CLLFOCLF_02025	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
CLLFOCLF_02026	8.46e-301	-	-	-	E	-	-	-	amino acid
CLLFOCLF_02027	7.15e-177	yfhR3	-	-	S	ko:K06889	-	ko00000	Serine hydrolase (FSH1)
CLLFOCLF_02028	2.96e-211	-	-	-	GK	-	-	-	ROK family
CLLFOCLF_02029	0.0	fusA1	-	-	J	-	-	-	elongation factor G
CLLFOCLF_02030	7.46e-106	uspA3	-	-	T	-	-	-	universal stress protein
CLLFOCLF_02031	1e-248	lplA	6.3.1.20	-	H	ko:K03800	ko00785,ko01100,map00785,map01100	ko00000,ko00001,ko01000	Lipoate-protein ligase
CLLFOCLF_02032	1.78e-83	-	-	-	-	-	-	-	-
CLLFOCLF_02033	2.31e-11	-	-	-	-	-	-	-	-
CLLFOCLF_02034	5.95e-76	-	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
CLLFOCLF_02035	3.49e-50	-	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
CLLFOCLF_02036	3.74e-174	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
CLLFOCLF_02037	1.6e-269	-	-	-	EGP	-	-	-	Major Facilitator
CLLFOCLF_02038	0.0	-	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system Galactitol-specific IIC component
CLLFOCLF_02039	6.49e-30	-	-	-	C	-	-	-	Zinc-binding dehydrogenase
CLLFOCLF_02040	1.4e-108	-	-	-	C	-	-	-	Zinc-binding dehydrogenase
CLLFOCLF_02041	1.92e-204	-	-	-	-	-	-	-	-
CLLFOCLF_02042	1.3e-95	-	-	-	K	-	-	-	Transcriptional regulator
CLLFOCLF_02043	4.14e-231	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
CLLFOCLF_02044	2.59e-68	-	-	-	S	ko:K08987	-	ko00000	Protein of unknown function (DUF1304)
CLLFOCLF_02045	0.0	nhaK	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
CLLFOCLF_02046	6.5e-71	-	-	-	-	-	-	-	-
CLLFOCLF_02047	4.63e-144	-	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Cobalt transport protein
CLLFOCLF_02048	7.23e-316	-	-	-	S	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLLFOCLF_02049	3e-127	ykoE	-	-	S	ko:K16925	-	ko00000,ko00002,ko02000	ABC-type cobalt transport system, permease component
CLLFOCLF_02050	5.98e-171	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
CLLFOCLF_02052	9e-144	-	-	-	IQ	-	-	-	KR domain
CLLFOCLF_02053	5.68e-12	-	-	-	IQ	-	-	-	KR domain
CLLFOCLF_02054	5.46e-233	iunH1	3.2.2.1	-	F	ko:K01239	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	nucleoside hydrolase
CLLFOCLF_02055	3.99e-232	yumC	1.18.1.2, 1.19.1.1	-	C	ko:K21567	-	ko00000,ko01000	Ferredoxin--NADP reductase
CLLFOCLF_02056	3.5e-43	-	-	-	S	-	-	-	Double zinc ribbon
CLLFOCLF_02057	6.89e-75	-	-	-	S	-	-	-	Double zinc ribbon
CLLFOCLF_02058	1.69e-44	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLLFOCLF_02059	2.16e-121	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLLFOCLF_02060	2.14e-148	-	-	-	S	-	-	-	HAD hydrolase, family IA, variant
CLLFOCLF_02061	1.34e-223	yagE	-	-	E	-	-	-	amino acid
CLLFOCLF_02062	4.5e-55	yagE	-	-	E	-	-	-	amino acid
CLLFOCLF_02063	1.7e-111	dps	-	-	P	ko:K04047	-	ko00000,ko03036	Belongs to the Dps family
CLLFOCLF_02064	0.0	atp2C1	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
CLLFOCLF_02065	6.09e-226	pepR	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
CLLFOCLF_02066	0.0	pepX	3.4.14.11	-	E	ko:K01281	-	ko00000,ko01000,ko01002	Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
CLLFOCLF_02067	1.25e-262	potA	3.6.3.30, 3.6.3.31	-	P	ko:K02010,ko:K11072	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
CLLFOCLF_02068	4.13e-186	potB	-	-	P	ko:K11071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLLFOCLF_02069	7.65e-184	potC	-	-	P	ko:K11070	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLLFOCLF_02070	2.33e-264	potD	-	-	P	ko:K11069	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLLFOCLF_02071	4.88e-42	-	-	-	-	-	-	-	-
CLLFOCLF_02072	5.07e-82	-	-	-	-	-	-	-	-
CLLFOCLF_02073	4.81e-22	-	-	-	-	-	-	-	-
CLLFOCLF_02074	8e-39	-	-	-	-	-	-	-	-