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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	KEGG_ko	KEGG_Pathway	BRITE	Description
GEMNEGCL_00001	1.44e-62	-	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
GEMNEGCL_00002	3.71e-163	adh2	1.1.1.1	-	E	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	alcohol dehydrogenase
GEMNEGCL_00003	1.17e-87	-	-	-	GM	-	-	-	NAD(P)H-binding
GEMNEGCL_00004	1.59e-44	-	-	-	S	-	-	-	Domain of unknown function (DUF4440)
GEMNEGCL_00005	3.49e-113	-	-	-	K	-	-	-	LysR substrate binding domain
GEMNEGCL_00007	2.25e-57	-	-	-	K	-	-	-	Tetracycline repressor, C-terminal all-alpha domain
GEMNEGCL_00008	5.94e-100	-	-	-	S	ko:K06889	-	ko00000	X-Pro dipeptidyl-peptidase (S15 family)
GEMNEGCL_00010	1.09e-46	-	-	-	-	-	-	-	-
GEMNEGCL_00011	1.24e-75	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
GEMNEGCL_00012	1.48e-134	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
GEMNEGCL_00013	7.92e-218	coaA	2.7.1.33	-	F	ko:K00867	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Pantothenic acid kinase
GEMNEGCL_00014	1.88e-125	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase
GEMNEGCL_00015	1.36e-96	yjcF	-	-	S	-	-	-	Acetyltransferase (GNAT) domain
GEMNEGCL_00016	7.09e-184	aatB	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_00017	6.89e-136	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter
GEMNEGCL_00018	3e-139	yecS_2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
GEMNEGCL_00019	0.0	helD	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	DNA helicase
GEMNEGCL_00020	9.95e-157	XK27_08875	-	-	O	-	-	-	PFAM peptidase M10A and M12B, matrixin and adamalysin
GEMNEGCL_00021	7.53e-163	gpm2	-	-	G	-	-	-	Phosphoglycerate mutase family
GEMNEGCL_00022	1.87e-308	-	-	-	S	-	-	-	response to antibiotic
GEMNEGCL_00023	2.7e-162	-	-	-	-	-	-	-	-
GEMNEGCL_00024	0.0	pacL3	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
GEMNEGCL_00025	7.34e-86	-	2.7.1.191	-	G	ko:K02793	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system fructose IIA component
GEMNEGCL_00026	1.42e-57	-	-	-	-	-	-	-	-
GEMNEGCL_00027	4.65e-14	-	-	-	-	-	-	-	-
GEMNEGCL_00028	1.29e-27	cydA	1.10.3.14	-	C	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	ubiquinol oxidase
GEMNEGCL_00029	3.22e-185	-	-	-	K	-	-	-	rpiR family
GEMNEGCL_00030	5.06e-237	-	-	-	S	ko:K09963	-	ko00000	Bacterial protein of unknown function (DUF871)
GEMNEGCL_00031	2.47e-223	ybbE	3.4.16.4	-	V	ko:K21469	ko00550,map00550	ko00000,ko00001,ko01000,ko01002,ko01011	Beta-lactamase
GEMNEGCL_00032	1.54e-194	murQ	4.2.1.126	-	G	ko:K07106	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
GEMNEGCL_00033	0.0	pts32BC	2.7.1.211	-	G	ko:K02808,ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
GEMNEGCL_00034	5.03e-313	mdr	-	-	EGP	-	-	-	Major Facilitator
GEMNEGCL_00035	1.72e-285	metK	2.5.1.6	-	H	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
GEMNEGCL_00038	1.13e-136	-	-	-	P	ko:K02077	-	ko00000,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
GEMNEGCL_00039	2.36e-29	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	domain protein
GEMNEGCL_00040	1.08e-217	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
GEMNEGCL_00041	9.29e-51	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
GEMNEGCL_00042	8.95e-70	-	-	-	K	-	-	-	LytTr DNA-binding domain
GEMNEGCL_00045	1.75e-164	-	-	-	M	-	-	-	Rib/alpha-like repeat
GEMNEGCL_00046	2.31e-277	yqjV	-	-	EGP	-	-	-	Major Facilitator Superfamily
GEMNEGCL_00047	2.19e-292	XK27_04775	-	-	S	ko:K09155	-	ko00000	PAS domain
GEMNEGCL_00048	3.41e-132	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
GEMNEGCL_00049	1.35e-180	nrdG	1.97.1.4	-	O	ko:K04068	-	ko00000,ko01000	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
GEMNEGCL_00050	0.0	nrdD	1.1.98.6	-	F	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Ribonucleoside-triphosphate reductase
GEMNEGCL_00051	0.0	yxbA	6.3.1.12	-	S	ko:K17810	-	ko00000,ko01000	ATP-grasp enzyme
GEMNEGCL_00052	0.0	asnB	6.3.5.4	-	E	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	ko00000,ko00001,ko01000,ko01002	Asparagine synthase
GEMNEGCL_00053	0.0	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
GEMNEGCL_00054	5.18e-109	-	-	-	-	-	-	-	-
GEMNEGCL_00055	5.61e-138	tag	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	glycosylase
GEMNEGCL_00056	1.81e-31	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00057	0.0	galT	2.7.7.12	-	G	ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	ko00000,ko00001,ko00002,ko01000	UDP-glucose--hexose-1-phosphate uridylyltransferase
GEMNEGCL_00058	3.56e-281	galK	2.7.1.6	-	F	ko:K00849	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
GEMNEGCL_00059	0.0	lacZ	3.2.1.23	-	G	ko:K12308	ko00052,map00052	ko00000,ko00001,ko01000	-beta-galactosidase
GEMNEGCL_00060	0.0	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
GEMNEGCL_00061	1.48e-210	lacR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
GEMNEGCL_00062	0.0	lacL	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
GEMNEGCL_00063	4.35e-185	lacM	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	beta-galactosidase
GEMNEGCL_00064	4.71e-239	galE	5.1.3.2	-	M	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family
GEMNEGCL_00065	4.05e-209	-	-	-	S	-	-	-	Nucleotidyl transferase AbiEii toxin, Type IV TA system
GEMNEGCL_00066	5.55e-137	-	-	-	K	-	-	-	Transcriptional regulator, AbiEi antitoxin
GEMNEGCL_00067	4.05e-242	-	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding protein-like domain
GEMNEGCL_00068	7.61e-42	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
GEMNEGCL_00069	3.26e-23	rpmH	-	-	J	ko:K02914	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL34 family
GEMNEGCL_00070	2.65e-81	rnpA	3.1.26.5	-	J	ko:K03536	-	ko00000,ko01000,ko03016	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
GEMNEGCL_00071	3.37e-192	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
GEMNEGCL_00072	0.0	mnmE	-	-	S	ko:K03650	-	ko00000,ko01000,ko03016	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
GEMNEGCL_00073	0.0	gidA	-	-	D	ko:K03495	-	ko00000,ko03016,ko03036	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
GEMNEGCL_00074	0.0	pox1	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
GEMNEGCL_00075	2.42e-40	-	-	-	-	-	-	-	-
GEMNEGCL_00076	0.0	gnd	1.1.1.343, 1.1.1.44	-	H	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
GEMNEGCL_00077	0.0	eriC	-	-	P	ko:K03281	-	ko00000	chloride
GEMNEGCL_00078	1.21e-42	-	-	-	E	-	-	-	Zn peptidase
GEMNEGCL_00079	8.29e-76	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_00080	4.75e-58	-	-	-	-	-	-	-	-
GEMNEGCL_00081	4.54e-135	-	-	-	S	-	-	-	Bacteriocin helveticin-J
GEMNEGCL_00082	1.14e-154	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_00083	6.57e-175	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_00084	3.91e-269	-	-	-	-	-	-	-	-
GEMNEGCL_00085	6.46e-27	-	-	-	-	-	-	-	-
GEMNEGCL_00086	1.83e-316	-	-	-	EGP	ko:K08368	-	ko00000,ko02000	Sugar (and other) transporter
GEMNEGCL_00087	3.14e-137	-	-	-	-	-	-	-	-
GEMNEGCL_00088	6.63e-147	crp2	-	-	K	ko:K10914,ko:K21562	ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111	ko00000,ko00001,ko03000	helix_turn_helix, cAMP Regulatory protein
GEMNEGCL_00089	0.0	copA	3.6.3.3, 3.6.3.5, 3.6.3.54	-	P	ko:K01534,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	P-type ATPase
GEMNEGCL_00090	3.27e-58	-	-	-	S	-	-	-	Cupredoxin-like domain
GEMNEGCL_00091	5.94e-75	-	-	-	S	-	-	-	Cupredoxin-like domain
GEMNEGCL_00092	3.15e-48	-	-	-	-	-	-	-	-
GEMNEGCL_00096	2.27e-179	-	-	-	-	-	-	-	-
GEMNEGCL_00097	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
GEMNEGCL_00098	7.23e-50	-	-	-	S	ko:K11621	ko02020,map02020	ko00000,ko00001	Putative adhesin
GEMNEGCL_00099	4.76e-168	ybbM	-	-	S	ko:K02069	-	ko00000,ko00002,ko02000	Uncharacterised protein family (UPF0014)
GEMNEGCL_00100	3.16e-144	ybbL	-	-	S	ko:K02068	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_00101	0.0	-	-	-	S	-	-	-	SH3-like domain
GEMNEGCL_00102	1.16e-128	clpP	3.4.21.92	-	O	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
GEMNEGCL_00103	8.59e-221	whiA	-	-	K	ko:K09762	-	ko00000	May be required for sporulation
GEMNEGCL_00104	2.78e-251	yvcK	-	-	S	-	-	-	Required for morphogenesis under gluconeogenic growth conditions
GEMNEGCL_00105	2.44e-211	yvcJ	-	-	S	ko:K06958	-	ko00000,ko03019	Displays ATPase and GTPase activities
GEMNEGCL_00106	1.55e-117	-	-	-	S	-	-	-	Short repeat of unknown function (DUF308)
GEMNEGCL_00107	0.0	uvrA	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
GEMNEGCL_00108	0.0	uvrB	-	-	L	ko:K03702	ko03420,map03420	ko00000,ko00001,ko03400	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
GEMNEGCL_00109	0.0	pgm	5.4.2.2	-	G	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
GEMNEGCL_00110	3.42e-232	trxB	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
GEMNEGCL_00111	3.31e-239	gpsA	1.1.1.94	-	I	ko:K00057	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	Glycerol-3-phosphate dehydrogenase
GEMNEGCL_00112	4.04e-203	lgt	-	-	M	ko:K13292	-	ko00000,ko01000	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
GEMNEGCL_00113	3.54e-230	hprK	-	-	F	ko:K06023	-	ko00000,ko01000	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
GEMNEGCL_00114	8.33e-27	-	-	-	-	-	-	-	-
GEMNEGCL_00115	4.17e-236	prfB	-	-	J	ko:K02836	-	ko00000,ko03012	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
GEMNEGCL_00116	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
GEMNEGCL_00117	1.55e-122	hpf	-	-	J	ko:K05808	-	ko00000,ko03009	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
GEMNEGCL_00118	9.44e-169	comFC	-	-	S	ko:K02242	-	ko00000,ko00002,ko02044	Competence protein
GEMNEGCL_00119	2.68e-314	comFA	-	-	L	ko:K02240	-	ko00000,ko00002,ko02044	Helicase C-terminal domain protein
GEMNEGCL_00120	5.04e-154	yvyE	3.4.13.9	-	S	ko:K01271	-	ko00000,ko01000,ko01002	YigZ family
GEMNEGCL_00121	1.94e-268	tagO	2.7.8.33, 2.7.8.35	-	M	ko:K02851	-	ko00000,ko01000,ko01003,ko01005	transferase
GEMNEGCL_00122	3.03e-293	rny	-	-	S	ko:K18682	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Endoribonuclease that initiates mRNA decay
GEMNEGCL_00123	1.17e-248	recA	-	-	L	ko:K03553	ko03440,map03440	ko00000,ko00001,ko00002,ko03400	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
GEMNEGCL_00124	3.92e-123	pgsA	2.7.8.5	-	I	ko:K00995	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
GEMNEGCL_00125	2.13e-152	ymfM	-	-	S	ko:K15539	-	ko00000	Helix-turn-helix domain
GEMNEGCL_00126	1.39e-171	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl-(Acyl carrier protein) reductase
GEMNEGCL_00127	5.49e-301	ymfH	-	-	S	-	-	-	Peptidase M16
GEMNEGCL_00128	1.47e-284	ymfF	-	-	S	-	-	-	Peptidase M16 inactive domain protein
GEMNEGCL_00129	0.0	ftsK	-	-	D	ko:K03466	-	ko00000,ko03036	Belongs to the FtsK SpoIIIE SftA family
GEMNEGCL_00130	3.12e-91	-	-	-	S	-	-	-	Protein of unknown function (DUF1149)
GEMNEGCL_00131	2.12e-136	cspR	2.1.1.207	-	J	ko:K03216	-	ko00000,ko01000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
GEMNEGCL_00132	2.19e-270	XK27_05220	-	-	S	-	-	-	AI-2E family transporter
GEMNEGCL_00133	1.99e-87	srlB	2.7.1.198	-	G	ko:K02781	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system glucitol/sorbitol-specific IIA component
GEMNEGCL_00134	1.01e-255	pgl	3.1.1.31	-	G	ko:K07404	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Lactonase, 7-bladed beta-propeller
GEMNEGCL_00135	4.52e-237	yumC	1.18.1.2, 1.19.1.1	-	C	ko:K21567	-	ko00000,ko01000	Ferredoxin--NADP reductase
GEMNEGCL_00136	4.86e-150	dedA	-	-	S	ko:K03975	-	ko00000	SNARE-like domain protein
GEMNEGCL_00137	2.15e-137	-	-	-	S	-	-	-	Protein of unknown function (DUF1461)
GEMNEGCL_00138	1.1e-184	nagD	3.1.3.41	-	G	ko:K01101	ko00627,ko01120,map00627,map01120	ko00000,ko00001,ko01000	Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
GEMNEGCL_00139	6.48e-136	yutD	-	-	S	-	-	-	Protein of unknown function (DUF1027)
GEMNEGCL_00140	0.0	sasH	3.1.3.5, 3.1.3.6, 3.1.4.16, 3.6.1.45	-	F	ko:K01081,ko:K01119,ko:K07004,ko:K08693,ko:K11751	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
GEMNEGCL_00141	9.89e-74	-	-	-	-	-	-	-	-
GEMNEGCL_00142	0.0	-	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
GEMNEGCL_00143	1.23e-231	ccpA	-	-	K	ko:K02529	-	ko00000,ko03000	catabolite control protein A
GEMNEGCL_00144	1.6e-272	pepQ	3.4.13.9	-	E	ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
GEMNEGCL_00145	4.64e-63	-	-	-	S	-	-	-	Domain of unknown function (DUF4811)
GEMNEGCL_00146	0.0	ycnB	-	-	U	-	-	-	Belongs to the major facilitator superfamily
GEMNEGCL_00147	8.94e-100	-	-	-	K	-	-	-	MerR HTH family regulatory protein
GEMNEGCL_00148	1.43e-178	-	-	-	S	-	-	-	Cysteine-rich secretory protein family
GEMNEGCL_00149	0.0	ycaM	-	-	E	-	-	-	amino acid
GEMNEGCL_00150	0.0	-	-	-	-	-	-	-	-
GEMNEGCL_00152	9.53e-241	cggR	-	-	K	ko:K05311	-	ko00000,ko03000	Putative sugar-binding domain
GEMNEGCL_00153	2.86e-244	gap	1.2.1.12	-	G	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
GEMNEGCL_00154	2.86e-286	pgk	2.7.2.3	-	F	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the phosphoglycerate kinase family
GEMNEGCL_00155	5.46e-183	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
GEMNEGCL_00156	1.18e-253	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
GEMNEGCL_00157	3.07e-124	-	-	-	-	-	-	-	-
GEMNEGCL_00158	2.81e-200	ycsE	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
GEMNEGCL_00159	1.64e-174	ung	3.2.2.27	-	L	ko:K03648	ko03410,ko05340,map03410,map05340	ko00000,ko00001,ko01000,ko03400	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
GEMNEGCL_00160	1.1e-232	pta	2.3.1.8, 3.6.3.21	-	C	ko:K00625,ko:K02028	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000,ko02000	phosphate acetyltransferase
GEMNEGCL_00161	4.82e-113	ydiB	-	-	O	ko:K06925	-	ko00000,ko03016	Hydrolase, P-loop family
GEMNEGCL_00162	1.51e-127	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
GEMNEGCL_00163	2.84e-208	murB	1.3.1.98	-	M	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation
GEMNEGCL_00164	1.25e-263	potA	3.6.3.30, 3.6.3.31	-	P	ko:K02010,ko:K11072	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
GEMNEGCL_00165	8.77e-173	potB	-	-	P	ko:K11071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
GEMNEGCL_00166	3.69e-170	potC	-	-	P	ko:K11070	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
GEMNEGCL_00167	2.33e-264	potD	-	-	P	ko:K11069	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
GEMNEGCL_00168	2.13e-194	dacA	2.7.7.85	-	S	ko:K18672	-	ko00000,ko01000	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
GEMNEGCL_00169	2.76e-221	ybbR	-	-	S	-	-	-	YbbR-like protein
GEMNEGCL_00170	0.0	glmM	5.4.2.10	-	G	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko01000	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GEMNEGCL_00171	8.04e-190	-	-	-	S	-	-	-	hydrolase
GEMNEGCL_00172	3.23e-98	copY	-	-	K	ko:K02171	ko01501,map01501	ko00000,ko00001,ko00002,ko01504,ko03000	Penicillinase repressor
GEMNEGCL_00173	2.85e-153	-	-	-	-	-	-	-	-
GEMNEGCL_00174	3.07e-112	ptpA	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
GEMNEGCL_00175	1.25e-262	glxK	2.7.1.165	-	G	ko:K00865	ko00260,ko00561,ko00630,ko01100,ko01120,ko01130,map00260,map00561,map00630,map01100,map01120,map01130	ko00000,ko00001,ko01000	Belongs to the glycerate kinase type-1 family
GEMNEGCL_00176	2.78e-14	bglG5	-	-	K	ko:K03488	-	ko00000,ko03000	CAT RNA binding domain
GEMNEGCL_00177	1.19e-155	bglG5	-	-	K	ko:K03488	-	ko00000,ko03000	CAT RNA binding domain
GEMNEGCL_00178	0.0	pts33BCA	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
GEMNEGCL_00179	0.0	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
GEMNEGCL_00180	5.92e-235	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
GEMNEGCL_00181	0.0	-	-	-	E	-	-	-	Amino acid permease
GEMNEGCL_00183	4.8e-38	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
GEMNEGCL_00184	7.83e-140	ylbE	-	-	GM	-	-	-	NAD(P)H-binding
GEMNEGCL_00185	3.31e-120	-	-	-	S	-	-	-	VanZ like family
GEMNEGCL_00186	5.65e-171	yebC	-	-	K	-	-	-	Transcriptional regulatory protein
GEMNEGCL_00187	5.04e-231	comGA	-	-	NU	ko:K02243	-	ko00000,ko00002,ko02044	Type II IV secretion system protein
GEMNEGCL_00188	1.72e-222	comGB	-	-	NU	ko:K02244	-	ko00000,ko00002,ko02044	type II secretion system
GEMNEGCL_00189	7.88e-63	comGC	-	-	U	ko:K02245	-	ko00000,ko00002,ko02044	competence protein ComGC
GEMNEGCL_00190	9.96e-92	-	-	-	-	ko:K02246	-	ko00000,ko00002,ko02044	-
GEMNEGCL_00191	1.96e-54	-	-	-	-	-	-	-	-
GEMNEGCL_00192	1.31e-98	-	-	-	U	ko:K02248	-	ko00000,ko00002,ko02044	Putative Competence protein ComGF
GEMNEGCL_00193	3.69e-30	-	-	-	-	-	-	-	-
GEMNEGCL_00194	4.37e-241	ytxK	2.1.1.72	-	L	ko:K00571	-	ko00000,ko01000,ko02048	N-6 DNA Methylase
GEMNEGCL_00195	1.07e-281	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
GEMNEGCL_00197	2.26e-188	int3	-	-	L	-	-	-	Belongs to the 'phage' integrase family
GEMNEGCL_00199	1.11e-19	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
GEMNEGCL_00200	3.11e-30	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_00201	3.68e-33	-	-	-	K	-	-	-	Helix-turn-helix domain
GEMNEGCL_00202	2.72e-35	-	-	-	S	-	-	-	Domain of unknown function (DUF771)
GEMNEGCL_00211	5.69e-06	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
GEMNEGCL_00217	2.94e-166	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
GEMNEGCL_00218	4.55e-221	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
GEMNEGCL_00219	5e-53	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
GEMNEGCL_00220	3.88e-52	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
GEMNEGCL_00221	0.0	serS	6.1.1.11	-	J	ko:K01875	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
GEMNEGCL_00222	2.48e-129	yjcK	2.3.1.128	-	J	ko:K03790	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
GEMNEGCL_00223	3.2e-143	-	-	-	S	-	-	-	SNARE associated Golgi protein
GEMNEGCL_00224	3.56e-102	-	-	-	-	-	-	-	-
GEMNEGCL_00225	0.0	-	-	-	L	-	-	-	Plasmid pRiA4b ORF-3-like protein
GEMNEGCL_00226	2.32e-313	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
GEMNEGCL_00227	8.75e-197	-	-	-	-	-	-	-	-
GEMNEGCL_00228	0.0	malH	3.2.1.122	GH4	G	ko:K01232	ko00500,map00500	ko00000,ko00001,ko01000	Family 4 glycosyl hydrolase C-terminal domain
GEMNEGCL_00229	8.28e-176	-	-	-	K	ko:K03481	-	ko00000,ko03000	Helix-turn-helix domain, rpiR family
GEMNEGCL_00230	4.71e-239	ansA	3.5.1.1	-	EJ	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110	ko00000,ko00001,ko01000	L-asparaginase, type I
GEMNEGCL_00231	3.42e-30	-	-	-	S	-	-	-	HicA toxin of bacterial toxin-antitoxin,
GEMNEGCL_00232	1.23e-313	purB	4.3.2.2	-	F	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
GEMNEGCL_00233	0.0	purA	6.3.4.4	-	F	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
GEMNEGCL_00234	6.69e-239	guaC	1.7.1.7	-	F	ko:K00364	ko00230,map00230	ko00000,ko00001,ko01000	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
GEMNEGCL_00237	1.84e-263	-	4.2.1.126	-	S	ko:K07106,ko:K09963	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Bacterial protein of unknown function (DUF871)
GEMNEGCL_00238	5.12e-242	asnA	6.3.1.1	-	F	ko:K01914	ko00250,ko00460,ko01100,ko01110,ko01230,map00250,map00460,map01100,map01110,map01230	ko00000,ko00001,ko01000	aspartate--ammonia ligase
GEMNEGCL_00239	6.45e-291	-	-	-	E	-	-	-	amino acid
GEMNEGCL_00240	6.65e-179	puuD	-	-	S	ko:K07010	-	ko00000,ko01002	peptidase C26
GEMNEGCL_00241	4.31e-204	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
GEMNEGCL_00242	2.43e-108	-	-	-	L	-	-	-	Helix-turn-helix domain
GEMNEGCL_00243	2.15e-194	-	-	-	L	-	-	-	Phage integrase, N-terminal SAM-like domain
GEMNEGCL_00244	7.7e-126	-	-	-	L	-	-	-	Helix-turn-helix domain
GEMNEGCL_00245	3.21e-175	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
GEMNEGCL_00247	3.38e-91	-	-	-	M	-	-	-	Glycosyltransferase like family 2
GEMNEGCL_00248	2.76e-188	-	-	-	S	ko:K03328	-	ko00000	Membrane protein involved in the export of O-antigen and teichoic acid
GEMNEGCL_00249	2.39e-85	rpe	5.1.3.1	-	G	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ribulose-phosphate 3-epimerase family
GEMNEGCL_00250	3.05e-53	-	2.7.1.200	-	GT	ko:K02773	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
GEMNEGCL_00251	3.94e-254	-	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
GEMNEGCL_00252	1.38e-46	-	2.7.1.200	-	G	ko:K02774	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
GEMNEGCL_00253	8.46e-98	-	-	-	S	-	-	-	Uncharacterised protein family UPF0047
GEMNEGCL_00254	1.55e-82	-	-	-	M	-	-	-	SIS domain
GEMNEGCL_00255	3.53e-63	hxlB	5.3.1.27	-	M	ko:K08094	ko00030,ko00680,ko01100,ko01120,ko01200,ko01230,map00030,map00680,map01100,map01120,map01200,map01230	ko00000,ko00001,ko00002,ko01000	SIS domain
GEMNEGCL_00256	5.28e-215	-	-	-	GKT	ko:K03491	-	ko00000,ko03000	Mga helix-turn-helix domain
GEMNEGCL_00257	2.16e-163	trmB	2.1.1.33	-	J	ko:K03439	-	ko00000,ko01000,ko03016	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
GEMNEGCL_00258	5.7e-282	ecsB	-	-	U	ko:K01992	-	ko00000,ko00002,ko02000	ABC transporter
GEMNEGCL_00259	1.05e-173	ecsA	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_00260	1.61e-101	hit	-	-	FG	ko:K02503	-	ko00000,ko04147	Scavenger mRNA decapping enzyme C-term binding
GEMNEGCL_00261	1.2e-41	-	-	-	-	-	-	-	-
GEMNEGCL_00262	1.09e-196	prsA	5.2.1.8	-	M	ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
GEMNEGCL_00263	1.64e-95	eda	4.1.2.14, 4.1.3.42	-	G	ko:K01625	ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	KDPG and KHG aldolase
GEMNEGCL_00264	0.0	-	-	-	-	-	-	-	-
GEMNEGCL_00265	9.67e-33	-	-	-	S	-	-	-	Domain of unknown function DUF1829
GEMNEGCL_00267	4.53e-239	yhaM	-	-	S	ko:K03698	-	ko00000,ko01000,ko03019	Metal dependent phosphohydrolases with conserved 'HD' motif.
GEMNEGCL_00268	0.0	yhaN	-	-	L	-	-	-	AAA domain
GEMNEGCL_00269	6.56e-293	yhaO	-	-	L	ko:K03547	-	ko00000,ko03400	Ser Thr phosphatase family protein
GEMNEGCL_00270	8.43e-73	yheA	-	-	S	-	-	-	Belongs to the UPF0342 family
GEMNEGCL_00271	0.0	pbp2A	2.4.1.129, 3.4.16.4	GT51	M	ko:K12555	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein
GEMNEGCL_00272	2.09e-208	rluA	5.4.99.23, 5.4.99.28, 5.4.99.29	-	J	ko:K06177,ko:K06180	-	ko00000,ko01000,ko03009,ko03016	Responsible for synthesis of pseudouridine from uracil
GEMNEGCL_00273	0.0	pps	2.7.9.2	-	H	ko:K01007	ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate
GEMNEGCL_00274	1.49e-13	-	-	-	G	-	-	-	Phosphoglycerate mutase family
GEMNEGCL_00275	1.91e-102	-	-	-	G	-	-	-	Phosphoglycerate mutase family
GEMNEGCL_00276	9.44e-183	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
GEMNEGCL_00277	0.0	XK27_08315	-	-	M	-	-	-	Sulfatase
GEMNEGCL_00278	8.24e-85	plsY1	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
GEMNEGCL_00279	9.78e-257	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
GEMNEGCL_00280	5.18e-128	-	-	-	G	-	-	-	Aldose 1-epimerase
GEMNEGCL_00281	4.51e-171	gpmA	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
GEMNEGCL_00282	1.72e-149	-	-	-	-	-	-	-	-
GEMNEGCL_00283	1.98e-168	-	-	-	-	-	-	-	-
GEMNEGCL_00284	1.68e-207	-	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
GEMNEGCL_00285	2.47e-138	pcp	3.4.19.3	-	O	ko:K01304	-	ko00000,ko01000,ko01002	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
GEMNEGCL_00286	7.07e-141	yjbQ	-	-	P	ko:K03455,ko:K03499	-	ko00000,ko02000	TrkA C-terminal domain protein
GEMNEGCL_00287	1.64e-222	yjbQ	-	-	P	ko:K03455,ko:K03499	-	ko00000,ko02000	TrkA C-terminal domain protein
GEMNEGCL_00288	7.32e-232	-	3.2.1.96, 3.5.1.28	GH73	M	ko:K01227,ko:K01447,ko:K13714,ko:K13731	ko00511,ko05100,map00511,map05100	ko00000,ko00001,ko01000	N-acetylmuramoyl-L-alanine amidase
GEMNEGCL_00289	2.09e-286	-	-	-	NU	-	-	-	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
GEMNEGCL_00291	4.65e-278	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
GEMNEGCL_00293	1.97e-315	chbC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
GEMNEGCL_00294	5.96e-283	yfmL	-	-	L	-	-	-	DEAD DEAH box helicase
GEMNEGCL_00295	6.12e-167	lys	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
GEMNEGCL_00296	7.42e-156	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902
GEMNEGCL_00297	1.39e-205	-	-	-	L	-	-	-	DDE superfamily endonuclease
GEMNEGCL_00298	1.97e-198	-	-	-	L	-	-	-	DDE superfamily endonuclease
GEMNEGCL_00299	9.82e-80	-	-	-	F	-	-	-	NUDIX domain
GEMNEGCL_00300	1.83e-103	-	-	-	S	-	-	-	AAA domain
GEMNEGCL_00301	1.5e-150	-	-	-	S	-	-	-	F420-0:Gamma-glutamyl ligase
GEMNEGCL_00302	1.59e-85	yxaM	-	-	EGP	-	-	-	Major facilitator Superfamily
GEMNEGCL_00303	3.24e-112	yxaM	-	-	EGP	-	-	-	Major facilitator Superfamily
GEMNEGCL_00304	2.16e-73	-	-	-	M	-	-	-	Rib/alpha-like repeat
GEMNEGCL_00305	9.48e-31	-	-	-	-	-	-	-	-
GEMNEGCL_00306	4.01e-84	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
GEMNEGCL_00307	5.51e-46	-	-	-	S	-	-	-	Transposase C of IS166 homeodomain
GEMNEGCL_00308	1.28e-311	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
GEMNEGCL_00310	4.51e-69	-	-	-	-	-	-	-	-
GEMNEGCL_00311	0.0	pepC	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
GEMNEGCL_00312	2.13e-66	-	-	-	-	-	-	-	-
GEMNEGCL_00313	2.32e-234	-	-	-	S	-	-	-	AAA domain
GEMNEGCL_00314	9.82e-164	gpmA1	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
GEMNEGCL_00315	2.42e-33	-	-	-	-	-	-	-	-
GEMNEGCL_00316	8.43e-206	-	-	-	P	ko:K16264	-	ko00000,ko02000	cation diffusion facilitator family transporter
GEMNEGCL_00317	3.16e-160	-	-	-	G	-	-	-	Belongs to the phosphoglycerate mutase family
GEMNEGCL_00318	2.02e-169	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
GEMNEGCL_00319	1.1e-152	-	3.8.1.2	-	S	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
GEMNEGCL_00320	4.57e-135	-	3.5.1.124	-	S	ko:K03152	-	ko00000,ko01000,ko01002	DJ-1/PfpI family
GEMNEGCL_00321	7.12e-65	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
GEMNEGCL_00322	4.4e-86	-	-	-	K	-	-	-	LytTr DNA-binding domain
GEMNEGCL_00324	1.77e-298	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
GEMNEGCL_00325	1.45e-36	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
GEMNEGCL_00326	1.73e-79	-	-	-	S	ko:K08987	-	ko00000	Protein of unknown function (DUF1304)
GEMNEGCL_00327	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
GEMNEGCL_00328	9.18e-202	-	-	-	C	-	-	-	Domain of unknown function (DUF4931)
GEMNEGCL_00329	1.58e-154	-	-	-	-	-	-	-	-
GEMNEGCL_00330	1.45e-183	XK27_08125	-	-	S	ko:K09861	-	ko00000	Belongs to the UPF0246 family
GEMNEGCL_00331	1.39e-180	-	-	-	S	ko:K06889	-	ko00000	Alpha/beta hydrolase family
GEMNEGCL_00333	1.93e-143	-	-	-	G	-	-	-	phosphoglycerate mutase
GEMNEGCL_00334	2.41e-118	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
GEMNEGCL_00335	1.05e-233	yxeA	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
GEMNEGCL_00336	2.12e-132	lolD	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_00337	0.0	pepD4	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
GEMNEGCL_00338	3.84e-179	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
GEMNEGCL_00339	3.77e-122	-	-	-	S	-	-	-	SNARE associated Golgi protein
GEMNEGCL_00340	0.0	mycA	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
GEMNEGCL_00341	7.96e-221	rluD2	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
GEMNEGCL_00342	1.91e-195	nadK	2.7.1.23	-	F	ko:K00858	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
GEMNEGCL_00343	1.7e-147	yjbM	2.7.6.5	-	S	ko:K07816	ko00230,map00230	ko00000,ko00001,ko01000	RelA SpoT domain protein
GEMNEGCL_00344	1.71e-143	-	-	-	S	-	-	-	CYTH
GEMNEGCL_00345	5.74e-148	yjbH	-	-	Q	-	-	-	Thioredoxin
GEMNEGCL_00346	3.83e-17	coiA	-	-	S	ko:K06198	-	ko00000	Competence protein
GEMNEGCL_00347	7.37e-158	coiA	-	-	S	ko:K06198	-	ko00000	Competence protein
GEMNEGCL_00348	1.5e-178	mecA	-	-	NOT	ko:K16511	-	ko00000	Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
GEMNEGCL_00349	6.28e-87	spxA	-	-	K	ko:K16509	-	ko00000	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
GEMNEGCL_00350	0.0	ptsI	2.7.3.9	-	G	ko:K08483	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
GEMNEGCL_00351	1.29e-54	ptsH	-	-	G	ko:K11189	-	ko00000,ko02000	phosphocarrier protein HPR
GEMNEGCL_00352	0.0	clpE	-	-	O	ko:K03697	-	ko00000,ko03110	Belongs to the ClpA ClpB family
GEMNEGCL_00353	8.42e-60	XK27_09445	-	-	S	-	-	-	Domain of unknown function (DUF1827)
GEMNEGCL_00354	0.0	prfC	-	-	J	ko:K02837	-	ko00000,ko03012	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
GEMNEGCL_00355	1.51e-182	hlyX	-	-	S	ko:K03699	-	ko00000,ko02042	Transporter associated domain
GEMNEGCL_00356	3.85e-98	-	-	-	-	-	-	-	-
GEMNEGCL_00357	1.43e-110	-	-	-	-	-	-	-	-
GEMNEGCL_00358	1.38e-185	recX	-	-	S	ko:K03565	-	ko00000,ko03400	Regulatory protein RecX
GEMNEGCL_00359	0.0	rumA_1	2.1.1.190, 2.1.1.35	-	J	ko:K00557,ko:K03215	-	ko00000,ko01000,ko03009,ko03016	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GEMNEGCL_00360	1.17e-151	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
GEMNEGCL_00361	1.52e-34	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
GEMNEGCL_00362	2.6e-59	-	-	-	-	-	-	-	-
GEMNEGCL_00363	7.15e-277	mvaS	2.3.3.10	-	I	ko:K01641	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Hydroxymethylglutaryl-CoA synthase
GEMNEGCL_00364	3.65e-273	mvaA	1.1.1.88, 2.3.1.9	-	C	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the HMG-CoA reductase family
GEMNEGCL_00365	8.62e-273	atoB	1.1.1.88, 2.3.1.9	-	I	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the thiolase family
GEMNEGCL_00366	1.6e-215	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
GEMNEGCL_00367	1.4e-208	rbn	-	-	S	ko:K07058	-	ko00000	Belongs to the UPF0761 family
GEMNEGCL_00368	2.45e-211	map	3.4.11.18	-	E	ko:K01265	-	ko00000,ko01000,ko01002	Methionine Aminopeptidase
GEMNEGCL_00369	5.14e-105	ykuP	-	-	C	ko:K03839	-	ko00000	Flavodoxin
GEMNEGCL_00370	3.7e-113	gtcA1	-	-	S	-	-	-	Teichoic acid glycosylation protein
GEMNEGCL_00371	3.37e-15	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_00372	3.69e-20	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	Sortase family
GEMNEGCL_00374	8.51e-10	-	-	-	M	-	-	-	oxidoreductase activity
GEMNEGCL_00379	2.46e-162	-	-	-	U	ko:K03205	ko03070,map03070	ko00000,ko00001,ko00002,ko02044	TraM recognition site of TraD and TraG
GEMNEGCL_00383	9.21e-194	-	-	-	S	-	-	-	COG0433 Predicted ATPase
GEMNEGCL_00384	8.52e-25	lysM	-	-	M	-	-	-	LysM domain
GEMNEGCL_00393	6.11e-33	-	-	-	L	-	-	-	four-way junction helicase activity
GEMNEGCL_00394	3.87e-23	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
GEMNEGCL_00395	1.11e-143	-	-	-	S	-	-	-	Fic/DOC family
GEMNEGCL_00396	1.42e-54	-	-	-	E	-	-	-	Pfam:DUF955
GEMNEGCL_00397	1.19e-31	-	-	-	L	ko:K07473	-	ko00000,ko02048	Addiction module antitoxin, RelB DinJ family
GEMNEGCL_00398	1.33e-22	-	-	-	S	-	-	-	PemK-like, MazF-like toxin of type II toxin-antitoxin system
GEMNEGCL_00399	3.24e-290	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
GEMNEGCL_00401	1.31e-231	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
GEMNEGCL_00404	1.91e-233	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase
GEMNEGCL_00405	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00406	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00407	3.74e-125	-	-	-	-	-	-	-	-
GEMNEGCL_00408	1.94e-96	-	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	UbiA prenyltransferase family
GEMNEGCL_00409	1.82e-05	-	-	-	-	-	-	-	-
GEMNEGCL_00410	1.38e-225	-	-	-	M	-	-	-	Rib/alpha-like repeat
GEMNEGCL_00411	4.21e-148	-	-	-	M	-	-	-	Rib/alpha-like repeat
GEMNEGCL_00412	1.89e-129	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
GEMNEGCL_00414	0.0	guaA	6.3.5.2	-	F	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the synthesis of GMP from XMP
GEMNEGCL_00415	1.1e-54	-	-	-	K	-	-	-	Helix-turn-helix
GEMNEGCL_00416	9.63e-136	xpt	2.4.2.22	-	F	ko:K03816	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
GEMNEGCL_00417	8.34e-294	pbuX	-	-	F	ko:K03458,ko:K16169	-	ko00000,ko02000	xanthine permease
GEMNEGCL_00418	2.07e-196	msmR	-	-	K	-	-	-	AraC-like ligand binding domain
GEMNEGCL_00419	0.0	pepDA	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
GEMNEGCL_00420	1.69e-61	-	-	-	F	-	-	-	AAA domain
GEMNEGCL_00421	4.61e-104	-	-	-	K	-	-	-	acetyltransferase
GEMNEGCL_00422	6.58e-311	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GEMNEGCL_00423	0.0	pyrG	6.3.4.2	-	F	ko:K01937	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
GEMNEGCL_00424	1.72e-90	rpoE	-	-	K	ko:K03048	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko03021,ko03400	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
GEMNEGCL_00425	1.44e-88	-	-	-	S	-	-	-	Domain of unknown function (DUF1934)
GEMNEGCL_00426	4.73e-32	-	-	-	S	-	-	-	Domain of unknown function (DUF4417)
GEMNEGCL_00427	2.72e-05	-	-	-	M	ko:K11021	-	ko00000,ko02042	COG3209 Rhs family protein
GEMNEGCL_00429	8.25e-16	-	-	-	S	-	-	-	Protein conserved in bacteria
GEMNEGCL_00430	4.26e-27	-	-	-	E	-	-	-	Pfam:DUF955
GEMNEGCL_00431	6.84e-70	-	-	-	-	-	-	-	-
GEMNEGCL_00432	7.22e-76	-	-	-	-	-	-	-	-
GEMNEGCL_00433	4.02e-11	-	-	-	-	-	-	-	-
GEMNEGCL_00434	1.29e-295	-	-	-	E	ko:K03294	-	ko00000	amino acid
GEMNEGCL_00435	0.0	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
GEMNEGCL_00436	5.83e-67	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
GEMNEGCL_00437	7.06e-114	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
GEMNEGCL_00438	0.0	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
GEMNEGCL_00439	8.59e-133	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
GEMNEGCL_00440	0.0	yhdP	-	-	S	-	-	-	Transporter associated domain
GEMNEGCL_00441	2.14e-154	-	-	-	C	-	-	-	nitroreductase
GEMNEGCL_00442	1.76e-52	-	-	-	-	-	-	-	-
GEMNEGCL_00443	1.96e-113	ptbA	2.7.1.208	-	G	ko:K02755,ko:K02777,ko:K20107,ko:K20108	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	ko00000,ko00001,ko00002,ko01000,ko02000	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
GEMNEGCL_00444	1.52e-103	-	-	-	-	-	-	-	-
GEMNEGCL_00445	6.89e-190	glvR	-	-	K	ko:K03481	-	ko00000,ko03000	Helix-turn-helix domain, rpiR family
GEMNEGCL_00446	0.0	glvC	2.7.1.208	-	G	ko:K02749,ko:K02750	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
GEMNEGCL_00447	7.44e-189	-	-	-	S	-	-	-	hydrolase
GEMNEGCL_00448	1.85e-205	-	-	-	S	-	-	-	Phospholipase, patatin family
GEMNEGCL_00449	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
GEMNEGCL_00450	6.3e-174	-	-	-	K	ko:K22103	-	ko00000,ko03000	DeoR C terminal sensor domain
GEMNEGCL_00451	2.9e-79	-	-	-	S	-	-	-	Enterocin A Immunity
GEMNEGCL_00452	7.49e-197	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
GEMNEGCL_00453	6.63e-174	gntR	-	-	K	-	-	-	UbiC transcription regulator-associated domain protein
GEMNEGCL_00454	1.01e-222	rihC	3.2.2.1	-	F	ko:K01239,ko:K01250,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	Nucleoside
GEMNEGCL_00455	0.0	kup	-	-	P	ko:K03549	-	ko00000,ko02000	Transport of potassium into the cell
GEMNEGCL_00456	6.36e-162	rpiA	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
GEMNEGCL_00457	7.3e-216	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
GEMNEGCL_00458	1.04e-208	-	-	-	C	-	-	-	Domain of unknown function (DUF4931)
GEMNEGCL_00459	3.81e-22	srrA1	-	-	G	ko:K02027,ko:K17244	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
GEMNEGCL_00460	7.24e-270	srrA1	-	-	G	ko:K02027,ko:K17244	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
GEMNEGCL_00461	4.77e-294	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2325)
GEMNEGCL_00462	2.18e-112	-	-	-	GKT	-	-	-	domain protein
GEMNEGCL_00463	0.0	-	3.2.1.170, 3.2.1.24	GH38	G	ko:K01191,ko:K15524	ko00511,map00511	ko00000,ko00001,ko01000,ko04131	Glycosyl hydrolases family 38 N-terminal domain
GEMNEGCL_00464	4.34e-198	fptC	-	-	U	ko:K02770	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	system, fructose-specific IIC component
GEMNEGCL_00465	5.84e-50	-	-	-	G	-	-	-	Psort location Cytoplasmic, score 9.98
GEMNEGCL_00466	2.4e-54	-	2.7.1.202	-	G	ko:K02768	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
GEMNEGCL_00467	2.77e-25	-	-	-	-	-	-	-	-
GEMNEGCL_00468	1.21e-40	-	-	-	-	-	-	-	-
GEMNEGCL_00469	1.05e-54	-	-	-	S	-	-	-	Protein of unknown function (DUF2922)
GEMNEGCL_00470	7.39e-165	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_00472	2.85e-54	-	-	-	-	-	-	-	-
GEMNEGCL_00473	3.6e-101	-	-	-	K	-	-	-	DNA-templated transcription, initiation
GEMNEGCL_00475	4.56e-191	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
GEMNEGCL_00476	6.87e-27	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
GEMNEGCL_00477	1.2e-89	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_00481	3.34e-63	sagD	-	-	S	-	-	-	YcaO cyclodehydratase, ATP-ad Mg2+-binding
GEMNEGCL_00482	2.18e-79	sagD	-	-	S	-	-	-	YcaO cyclodehydratase, ATP-ad Mg2+-binding
GEMNEGCL_00484	9.29e-86	sagB	-	-	C	-	-	-	Nitroreductase family
GEMNEGCL_00486	8.25e-65	-	-	-	V	ko:K01990,ko:K01992	-	ko00000,ko00002,ko02000	Transport permease protein
GEMNEGCL_00487	9.75e-80	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
GEMNEGCL_00489	3.5e-280	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
GEMNEGCL_00490	4.04e-36	-	-	-	-	-	-	-	-
GEMNEGCL_00491	1.33e-72	-	-	-	-	-	-	-	-
GEMNEGCL_00492	1.74e-185	-	-	-	S	-	-	-	Replication initiation factor
GEMNEGCL_00493	2.67e-180	-	-	-	D	-	-	-	Ftsk spoiiie family protein
GEMNEGCL_00494	6.59e-115	-	-	-	-	-	-	-	-
GEMNEGCL_00495	4.95e-98	-	-	-	-	-	-	-	-
GEMNEGCL_00496	6.48e-167	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_00498	3.92e-153	-	-	-	S	ko:K07507	-	ko00000,ko02000	MgtC family
GEMNEGCL_00499	1.37e-287	-	-	-	I	-	-	-	Protein of unknown function (DUF2974)
GEMNEGCL_00500	1.5e-90	-	-	-	-	-	-	-	-
GEMNEGCL_00501	4.36e-142	XK27_00160	-	-	S	-	-	-	Domain of unknown function (DUF5052)
GEMNEGCL_00502	3.35e-269	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
GEMNEGCL_00503	1.34e-34	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00504	3.76e-18	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
GEMNEGCL_00505	7.51e-16	-	-	-	L	-	-	-	Transposase
GEMNEGCL_00506	1.01e-22	-	-	-	L	-	-	-	Transposase
GEMNEGCL_00507	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
GEMNEGCL_00508	5.85e-86	nt5e	3.1.3.18	-	L	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	ko00000,ko00001,ko01000	haloacid dehalogenase-like hydrolase
GEMNEGCL_00509	1.52e-157	araD	5.1.3.4	-	G	ko:K03077	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
GEMNEGCL_00510	1.78e-163	sga	5.1.3.22	-	G	ko:K03079	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Xylose isomerase-like TIM barrel
GEMNEGCL_00511	2.85e-115	ulaD	4.1.1.85, 4.1.2.43	-	G	ko:K03078,ko:K08093	ko00030,ko00040,ko00053,ko00680,ko01100,ko01120,ko01200,ko01230,map00030,map00040,map00053,map00680,map01100,map01120,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Orotidine 5'-phosphate decarboxylase / HUMPS family
GEMNEGCL_00512	4.82e-42	ulaB	2.7.1.194	-	G	ko:K02822	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
GEMNEGCL_00513	6.58e-293	sgaT	-	-	S	ko:K03475	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
GEMNEGCL_00514	4.93e-80	-	2.7.1.194	-	G	ko:K02821	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
GEMNEGCL_00515	6.33e-221	ulaG	-	-	S	ko:K03476	ko00053,ko01100,ko01120,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Beta-lactamase superfamily domain
GEMNEGCL_00516	1.29e-190	-	-	-	P	ko:K02042	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
GEMNEGCL_00517	1.91e-168	phnB	-	-	P	ko:K02042	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
GEMNEGCL_00518	6.34e-180	phnC	3.6.3.28	-	P	ko:K02041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
GEMNEGCL_00519	1.78e-212	phnD	-	-	P	ko:K02044	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphonate ABC transporter
GEMNEGCL_00521	3.92e-110	usp5	-	-	T	-	-	-	universal stress protein
GEMNEGCL_00522	3.56e-191	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
GEMNEGCL_00523	7.6e-113	-	2.7.1.200, 2.7.1.204	-	G	ko:K02773,ko:K20112	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
GEMNEGCL_00524	1.14e-115	ntd	2.4.2.6	-	F	ko:K08728	ko00240,map00240	ko00000,ko00001,ko01000	Nucleoside
GEMNEGCL_00526	1.47e-13	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
GEMNEGCL_00527	1.11e-09	-	-	-	T	ko:K07172	-	ko00000,ko02048	SpoVT / AbrB like domain
GEMNEGCL_00529	5.55e-22	-	-	-	S	-	-	-	Domain of Unknown Function with PDB structure (DUF3850)
GEMNEGCL_00530	4.83e-125	-	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	VirC1 protein
GEMNEGCL_00532	3.54e-53	-	-	-	L	ko:K07473	-	ko00000,ko02048	RelB antitoxin
GEMNEGCL_00533	6.8e-48	-	-	-	S	ko:K19157	-	ko00000,ko01000,ko02048	Bacterial toxin of type II toxin-antitoxin system, YafQ
GEMNEGCL_00534	4.82e-102	-	-	-	V	-	-	-	Type I restriction modification DNA specificity domain
GEMNEGCL_00535	2.37e-214	-	-	-	V	-	-	-	N-6 DNA Methylase
GEMNEGCL_00536	2.61e-195	thiD	2.7.1.49, 2.7.4.7	-	H	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Phosphomethylpyrimidine kinase
GEMNEGCL_00537	1.3e-31	-	-	-	-	-	-	-	-
GEMNEGCL_00538	1.34e-175	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_00540	1.49e-151	-	-	-	V	-	-	-	Abi-like protein
GEMNEGCL_00542	5.38e-125	-	-	-	S	ko:K16924	-	ko00000,ko00002,ko02000	UPF0397 protein
GEMNEGCL_00543	0.0	ykoD	-	-	P	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_00544	3.51e-187	cbiQ	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	cobalt transport
GEMNEGCL_00545	1.46e-31	-	-	-	-	-	-	-	-
GEMNEGCL_00546	7.19e-93	ytwI	-	-	S	-	-	-	Protein of unknown function (DUF441)
GEMNEGCL_00547	0.0	citF	2.8.3.10	-	H	ko:K01643	ko02020,map02020	ko00000,ko00001,ko01000	Citrate (pro-3S)-lyase alpha chain
GEMNEGCL_00548	3.46e-212	citE	4.1.3.34	-	G	ko:K01644	ko02020,map02020	ko00000,ko00001,ko01000	Belongs to the HpcH HpaI aldolase family
GEMNEGCL_00549	1.6e-59	citD	-	-	C	ko:K01646	ko02020,map02020	ko00000,ko00001	Covalent carrier of the coenzyme of citrate lyase
GEMNEGCL_00550	5.17e-249	citC	6.2.1.22	-	H	ko:K01910	ko02020,map02020	ko00000,ko00001,ko01000	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
GEMNEGCL_00551	4.89e-196	-	-	-	I	-	-	-	Alpha/beta hydrolase family
GEMNEGCL_00552	0.0	citP	-	-	P	ko:K03319	-	ko00000	Sodium:sulfate symporter transmembrane region
GEMNEGCL_00553	5.26e-171	-	-	-	H	-	-	-	Aldolase/RraA
GEMNEGCL_00554	0.0	pepC4	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
GEMNEGCL_00555	1.66e-217	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
GEMNEGCL_00556	0.0	frdA	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
GEMNEGCL_00557	0.0	fumC	4.2.1.2	-	C	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	ko00000,ko00001,ko00002,ko01000	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
GEMNEGCL_00558	2.34e-122	metI	-	-	P	ko:K02072	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
GEMNEGCL_00559	5.74e-243	metN	-	-	P	ko:K02071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
GEMNEGCL_00560	4.37e-205	metQ	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
GEMNEGCL_00561	1.33e-225	-	-	-	F	ko:K15051	-	ko00000	DNA/RNA non-specific endonuclease
GEMNEGCL_00562	0.0	aha1	-	-	P	ko:K12952	-	ko00000,ko01000	E1-E2 ATPase
GEMNEGCL_00563	5.55e-119	folA	1.5.1.3	-	H	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
GEMNEGCL_00564	3.53e-228	thyA	2.1.1.45	-	F	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
GEMNEGCL_00565	0.0	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
GEMNEGCL_00566	8.44e-306	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
GEMNEGCL_00567	0.0	-	-	-	P	ko:K06148	-	ko00000,ko02000	ABC transporter
GEMNEGCL_00568	6.04e-49	-	-	-	-	-	-	-	-
GEMNEGCL_00570	1.46e-161	-	-	-	S	-	-	-	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
GEMNEGCL_00571	7.94e-114	-	-	-	K	-	-	-	GNAT family
GEMNEGCL_00572	3.7e-258	XK27_00915	-	-	C	-	-	-	Luciferase-like monooxygenase
GEMNEGCL_00573	3.8e-213	-	-	-	L	-	-	-	COG3385 FOG Transposase and inactivated derivatives
GEMNEGCL_00574	7.1e-136	ybbB	-	-	S	-	-	-	Protein of unknown function (DUF1211)
GEMNEGCL_00575	0.0	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
GEMNEGCL_00576	3.46e-32	-	-	-	S	-	-	-	Alpha beta hydrolase
GEMNEGCL_00577	1.47e-303	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
GEMNEGCL_00578	0.0	pulA	3.2.1.41	CBM48,GH13	G	ko:K01200	ko00500,ko01100,ko01110,map00500,map01100,map01110	ko00000,ko00001,ko01000	belongs to the glycosyl hydrolase 13 family
GEMNEGCL_00579	2.51e-52	-	-	-	K	ko:K03484	-	ko00000,ko03000	Periplasmic binding protein domain
GEMNEGCL_00580	7.63e-43	-	-	-	K	ko:K03484	-	ko00000,ko03000	Periplasmic binding protein domain
GEMNEGCL_00581	3.04e-45	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
GEMNEGCL_00582	2.16e-193	-	2.3.1.81	-	V	ko:K00662	-	ko00000,ko01000,ko01504	Aminoglycoside 3-N-acetyltransferase
GEMNEGCL_00583	6.64e-185	-	-	-	F	-	-	-	Phosphorylase superfamily
GEMNEGCL_00584	1.05e-176	-	-	-	F	-	-	-	Phosphorylase superfamily
GEMNEGCL_00585	4.89e-101	-	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Ham1 family
GEMNEGCL_00586	8.74e-146	rex	-	-	K	ko:K01926	-	ko00000,ko03000	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
GEMNEGCL_00587	0.0	ydiF	-	-	S	ko:K06158	-	ko00000,ko03012	ABC transporter, ATP-binding protein
GEMNEGCL_00588	0.0	spxB	1.2.3.3, 1.2.5.1, 2.2.1.6, 4.1.1.8	-	EH	ko:K00156,ko:K00158,ko:K01577,ko:K01652	ko00290,ko00620,ko00630,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00620,map00630,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TPP enzyme family
GEMNEGCL_00589	8.98e-214	frc	2.8.3.16	-	C	ko:K07749	-	ko00000,ko01000	Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate
GEMNEGCL_00590	2.44e-64	bbsF_1	2.8.3.19	-	C	ko:K18702	-	ko00000,ko01000	Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate
GEMNEGCL_00591	1.42e-247	tsaD	2.3.1.234	-	J	ko:K01409	-	ko00000,ko01000,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
GEMNEGCL_00592	4.59e-124	rimI	2.3.1.128	-	K	ko:K03789	-	ko00000,ko01000,ko03009	Ribosomal-protein-alanine acetyltransferase
GEMNEGCL_00593	1.83e-171	yeaZ	2.3.1.234	-	O	ko:K01409,ko:K14742	-	ko00000,ko01000,ko03016	Universal bacterial protein YeaZ
GEMNEGCL_00594	8.72e-111	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
GEMNEGCL_00595	3e-167	fat	3.1.2.21	-	I	ko:K01071	ko00061,ko01100,map00061,map01100	ko00000,ko00001,ko01000,ko01004	Acyl-ACP thioesterase
GEMNEGCL_00596	8.75e-200	rsmI	2.1.1.198	-	H	ko:K07056	-	ko00000,ko01000,ko03009	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
GEMNEGCL_00597	1.4e-80	yabA	-	-	L	-	-	-	Involved in initiation control of chromosome replication
GEMNEGCL_00598	3.99e-197	holB	2.7.7.7	-	L	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
GEMNEGCL_00599	7.55e-69	yaaQ	-	-	S	-	-	-	Cyclic-di-AMP receptor
GEMNEGCL_00600	1.29e-143	tmk	2.7.4.9	-	F	ko:K00943	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
GEMNEGCL_00601	1.18e-46	-	-	-	S	-	-	-	Protein of unknown function (DUF2508)
GEMNEGCL_00602	3.08e-140	recR	-	-	L	ko:K06187	ko03440,map03440	ko00000,ko00001,ko03400	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
GEMNEGCL_00603	1.55e-68	yaaK	-	-	S	ko:K09747	-	ko00000	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
GEMNEGCL_00604	1.15e-47	-	-	-	M	-	-	-	lipopolysaccharide 3-alpha-galactosyltransferase activity
GEMNEGCL_00605	1.12e-136	-	-	-	M	-	-	-	family 8
GEMNEGCL_00606	0.0	dnaX	2.7.7.7	-	L	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
GEMNEGCL_00607	1.44e-108	tadA	3.5.4.33	-	F	ko:K11991	-	ko00000,ko01000,ko03016	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
GEMNEGCL_00609	9.69e-25	-	-	-	-	-	-	-	-
GEMNEGCL_00610	1.42e-102	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Membrane domain of glycerophosphoryl diester phosphodiesterase
GEMNEGCL_00611	1.68e-274	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Membrane domain of glycerophosphoryl diester phosphodiesterase
GEMNEGCL_00612	1.94e-91	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
GEMNEGCL_00613	1.25e-244	ysdE	-	-	P	-	-	-	Citrate transporter
GEMNEGCL_00614	6.78e-124	lemA	-	-	S	ko:K03744	-	ko00000	LemA family
GEMNEGCL_00615	1.64e-207	htpX	-	-	O	ko:K03799	-	ko00000,ko00002,ko01000,ko01002	Belongs to the peptidase M48B family
GEMNEGCL_00616	1.05e-222	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
GEMNEGCL_00617	1.88e-63	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
GEMNEGCL_00618	6.89e-43	-	-	-	L	-	-	-	Transposase DDE domain
GEMNEGCL_00619	0.0	-	-	-	L	-	-	-	Transposase
GEMNEGCL_00620	0.0	nrdE	1.17.4.1	-	F	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GEMNEGCL_00621	1.82e-97	nrdI	-	-	F	ko:K03647	-	ko00000	NrdI Flavodoxin like
GEMNEGCL_00622	1e-247	nrdF	1.17.4.1	-	F	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GEMNEGCL_00623	0.0	phoR	2.7.13.3	-	T	ko:K07636	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
GEMNEGCL_00624	6.08e-153	phoB	-	-	T	ko:K07658	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	Transcriptional regulatory protein, C terminal
GEMNEGCL_00625	3.12e-135	-	-	-	P	ko:K02039	-	ko00000	Plays a role in the regulation of phosphate uptake
GEMNEGCL_00626	1.68e-177	pstB	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
GEMNEGCL_00627	4.1e-193	pstA	-	-	P	ko:K02038	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphate transport system permease protein PstA
GEMNEGCL_00628	3.26e-200	pstC	-	-	P	ko:K02037	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	probably responsible for the translocation of the substrate across the membrane
GEMNEGCL_00629	6.7e-187	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
GEMNEGCL_00630	5.68e-34	-	-	-	L	-	-	-	Phage integrase, N-terminal SAM-like domain
GEMNEGCL_00631	7.06e-102	yveB	-	-	I	-	-	-	PAP2 superfamily
GEMNEGCL_00633	1.38e-131	-	-	-	-	-	-	-	-
GEMNEGCL_00634	1.69e-49	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
GEMNEGCL_00635	2.2e-97	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_00636	6.1e-186	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_00637	2.26e-31	-	-	-	S	-	-	-	Transglycosylase associated protein
GEMNEGCL_00638	6.33e-17	-	-	-	S	-	-	-	CsbD-like
GEMNEGCL_00639	4.76e-213	scrK	2.7.1.4	-	GK	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	ROK family
GEMNEGCL_00640	6.11e-171	-	-	-	V	-	-	-	ABC transporter transmembrane region
GEMNEGCL_00641	2.36e-217	degV1	-	-	S	-	-	-	DegV family
GEMNEGCL_00642	5.56e-217	phnD	-	-	P	ko:K02044	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, phosphonate, periplasmic substrate-binding protein
GEMNEGCL_00643	0.0	dnaB	3.6.4.12	-	L	ko:K02314	ko03030,ko04112,map03030,map04112	ko00000,ko00001,ko01000,ko03032	Participates in initiation and elongation during chromosome replication
GEMNEGCL_00644	3.87e-97	rplI	-	-	J	ko:K02939	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
GEMNEGCL_00645	0.0	yybT	-	-	T	-	-	-	signaling protein consisting of a modified GGDEF domain and a DHH domain
GEMNEGCL_00646	1.89e-47	rpsR	-	-	J	ko:K02963	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
GEMNEGCL_00647	4.83e-104	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
GEMNEGCL_00648	2.74e-65	rpsF	-	-	J	ko:K02990	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Binds together with S18 to 16S ribosomal RNA
GEMNEGCL_00649	0.0	gyrA	5.99.1.3	-	L	ko:K02469	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
GEMNEGCL_00650	0.0	gyrB	5.99.1.3	-	L	ko:K02470	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
GEMNEGCL_00651	5.14e-268	recF	-	-	L	ko:K03629	ko03440,map03440	ko00000,ko00001,ko03400	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
GEMNEGCL_00652	1.13e-48	yaaA	-	-	S	ko:K14761	-	ko00000,ko03009	S4 domain protein YaaA
GEMNEGCL_00653	7.25e-309	cydA	1.10.3.14	-	C	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	ubiquinol oxidase
GEMNEGCL_00654	4.87e-236	cydB	1.10.3.14	-	C	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	Cytochrome d ubiquinol oxidase subunit II
GEMNEGCL_00655	0.0	cydC	-	-	CO	ko:K16013	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydD
GEMNEGCL_00656	0.0	cydD	-	-	CO	ko:K16012	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
GEMNEGCL_00657	1.76e-165	menG	2.1.1.163, 2.1.1.201	-	H	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
GEMNEGCL_00658	1.38e-226	hepT	2.5.1.30	-	H	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
GEMNEGCL_00659	4e-204	menA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	1,4-dihydroxy-2-naphthoate
GEMNEGCL_00660	1.74e-293	yumB	1.6.99.3	-	C	ko:K03885	ko00190,map00190	ko00000,ko00001,ko01000	NADH dehydrogenase
GEMNEGCL_00661	3.16e-52	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
GEMNEGCL_00662	4.91e-111	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
GEMNEGCL_00663	5.79e-217	-	-	-	K	-	-	-	LysR substrate binding domain
GEMNEGCL_00664	4.86e-157	yodM	3.6.1.27	-	I	ko:K19302	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	Acid phosphatase homologues
GEMNEGCL_00665	0.0	leuS	6.1.1.4	-	J	ko:K01869	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Belongs to the class-I aminoacyl-tRNA synthetase family
GEMNEGCL_00666	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
GEMNEGCL_00667	1.47e-66	pspC	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	PspC domain
GEMNEGCL_00669	2.71e-297	dacA	3.4.16.4	-	M	ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
GEMNEGCL_00670	1.23e-194	nnrD	4.2.1.136, 5.1.99.6	-	H	ko:K17758,ko:K17759	-	ko00000,ko01000	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
GEMNEGCL_00671	5.86e-131	-	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
GEMNEGCL_00672	0.0	argS	6.1.1.19	-	J	ko:K01887	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Arginyl-tRNA synthetase
GEMNEGCL_00673	7.33e-218	fba	4.1.2.13, 4.1.2.29	-	G	ko:K01624,ko:K03339	ko00010,ko00030,ko00051,ko00562,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00562,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-1,6-bisphosphate aldolase, class II
GEMNEGCL_00674	1.29e-115	-	-	-	EGP	-	-	-	Major Facilitator
GEMNEGCL_00675	3.73e-300	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
GEMNEGCL_00676	7.14e-91	-	-	-	EGP	-	-	-	Major Facilitator
GEMNEGCL_00677	2.58e-45	-	-	-	-	-	-	-	-
GEMNEGCL_00678	3.62e-272	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
GEMNEGCL_00679	1.18e-95	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	domain protein
GEMNEGCL_00681	5.89e-316	ade	3.5.4.2	-	F	ko:K01486	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000	Adenine deaminase C-terminal domain
GEMNEGCL_00682	1.22e-195	-	-	-	P	ko:K02055	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter
GEMNEGCL_00683	4.48e-174	potA11	3.6.3.30	-	P	ko:K02010,ko:K02052	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
GEMNEGCL_00684	7.05e-146	potC3	-	-	E	ko:K02053	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
GEMNEGCL_00685	5.29e-164	-	-	-	S	-	-	-	Alpha/beta hydrolase family
GEMNEGCL_00686	2.62e-199	epsV	-	-	S	-	-	-	glycosyl transferase family 2
GEMNEGCL_00687	9.18e-187	-	-	-	S	-	-	-	Protein of unknown function (DUF1002)
GEMNEGCL_00688	5.07e-190	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
GEMNEGCL_00689	1.24e-232	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
GEMNEGCL_00690	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GEMNEGCL_00691	1.32e-57	-	-	-	-	-	-	-	-
GEMNEGCL_00692	6.07e-223	ydhF	-	-	S	-	-	-	Aldo keto reductase
GEMNEGCL_00693	0.0	ykpA	-	-	S	-	-	-	ABC transporter, ATP-binding protein
GEMNEGCL_00694	4.37e-266	pepA	-	-	E	-	-	-	M42 glutamyl aminopeptidase
GEMNEGCL_00695	1.14e-55	-	-	-	-	-	-	-	-
GEMNEGCL_00696	2.2e-171	-	-	-	-	-	-	-	-
GEMNEGCL_00697	1.38e-275	pmrA	-	-	EGP	ko:K08161	-	ko00000,ko02000	MFS_1 like family
GEMNEGCL_00698	0.0	qacA	-	-	EGP	-	-	-	Major Facilitator
GEMNEGCL_00699	1.51e-117	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
GEMNEGCL_00700	1.66e-303	pyrP	-	-	F	ko:K02824	-	ko00000,ko02000	Permease
GEMNEGCL_00701	0.0	-	3.6.4.12	-	K	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Putative DNA-binding domain
GEMNEGCL_00702	1.05e-45	-	-	-	-	-	-	-	-
GEMNEGCL_00703	1.2e-199	-	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
GEMNEGCL_00704	6.13e-110	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
GEMNEGCL_00705	4.64e-296	-	-	-	L	-	-	-	Transposase DDE domain
GEMNEGCL_00706	1.84e-151	cas1	-	-	L	ko:K15342	-	ko00000,ko02048,ko03400	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
GEMNEGCL_00707	4.67e-54	cas2	-	-	L	ko:K09951	-	ko00000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
GEMNEGCL_00708	9.07e-51	-	-	-	S	-	-	-	CRISPR-associated protein (Cas_Csn2)
GEMNEGCL_00709	0.0	ctrA	-	-	E	ko:K03294	-	ko00000	amino acid
GEMNEGCL_00710	1.66e-44	-	-	-	K	-	-	-	Transcriptional regulator
GEMNEGCL_00711	4.54e-213	-	-	-	EGP	-	-	-	Major Facilitator
GEMNEGCL_00712	1.34e-34	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00713	1.92e-212	cas9	-	-	L	ko:K09952	-	ko00000,ko01000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
GEMNEGCL_00715	0.0	lctP	-	-	C	ko:K03303	-	ko00000,ko02000	L-lactate permease
GEMNEGCL_00716	7.01e-32	-	-	-	K	-	-	-	Transcriptional regulator
GEMNEGCL_00718	8.66e-234	-	-	-	M	-	-	-	Glycosyl transferase
GEMNEGCL_00719	2.59e-225	-	-	-	G	-	-	-	Glycosyl hydrolases family 8
GEMNEGCL_00720	1.11e-154	yfbR	-	-	S	ko:K07023	-	ko00000	HD containing hydrolase-like enzyme
GEMNEGCL_00721	8.8e-207	-	-	-	L	-	-	-	HNH nucleases
GEMNEGCL_00722	3.43e-192	yhaH	-	-	S	-	-	-	Protein of unknown function (DUF805)
GEMNEGCL_00723	2.89e-173	glnQ	-	-	E	ko:K17076	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_00724	0.0	XK27_05795	-	-	P	ko:K17073,ko:K17074	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
GEMNEGCL_00725	1.41e-155	yxlJ	3.2.2.21	-	L	ko:K03652	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Belongs to the DNA glycosylase MPG family
GEMNEGCL_00726	7.63e-85	yeaO	-	-	S	-	-	-	Protein of unknown function, DUF488
GEMNEGCL_00727	1.14e-164	terC	-	-	P	-	-	-	Integral membrane protein TerC family
GEMNEGCL_00728	1.25e-119	adaB	2.1.1.63	-	L	ko:K00567,ko:K10778,ko:K13531	-	ko00000,ko01000,ko03000,ko03400	6-O-methylguanine DNA methyltransferase, DNA binding domain
GEMNEGCL_00729	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00730	1.13e-201	-	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter transmembrane region
GEMNEGCL_00731	2.91e-83	-	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter transmembrane region
GEMNEGCL_00732	8.64e-85	yybA	-	-	K	-	-	-	Transcriptional regulator
GEMNEGCL_00733	8e-108	XK27_03150	2.3.1.57	-	K	ko:K22441	-	ko00000,ko01000	Acetyltransferase (GNAT) domain
GEMNEGCL_00734	5.59e-109	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
GEMNEGCL_00735	5.81e-98	ykoJ	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
GEMNEGCL_00736	2.37e-242	-	-	-	T	-	-	-	GHKL domain
GEMNEGCL_00737	1.75e-168	-	-	-	T	-	-	-	Transcriptional regulatory protein, C terminal
GEMNEGCL_00738	1.28e-228	pepR	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
GEMNEGCL_00739	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
GEMNEGCL_00740	0.0	-	-	-	S	-	-	-	Fibronectin type III domain
GEMNEGCL_00741	7.03e-307	tyrS	6.1.1.1	-	J	ko:K01866	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
GEMNEGCL_00743	0.0	pepC2	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
GEMNEGCL_00744	1.77e-157	ypgQ	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
GEMNEGCL_00745	0.0	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
GEMNEGCL_00746	0.0	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
GEMNEGCL_00747	0.0	-	-	-	L	-	-	-	Transposase DDE domain
GEMNEGCL_00748	2.64e-266	guaB	1.1.1.205	-	F	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
GEMNEGCL_00749	1.34e-191	oppB	-	-	P	ko:K15581	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC-type dipeptide oligopeptide nickel transport systems, permease components
GEMNEGCL_00750	7.82e-240	oppC	-	-	EP	ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC-type dipeptide oligopeptide nickel transport systems, permease components
GEMNEGCL_00751	4.79e-250	oppD	-	-	P	ko:K02031,ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
GEMNEGCL_00752	6.54e-222	oppF	-	-	P	ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
GEMNEGCL_00753	0.0	pepE	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
GEMNEGCL_00754	3.4e-93	hsp	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
GEMNEGCL_00755	8.08e-100	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
GEMNEGCL_00756	1.17e-143	-	-	-	-	-	-	-	-
GEMNEGCL_00758	7.04e-145	-	-	-	E	-	-	-	Belongs to the SOS response-associated peptidase family
GEMNEGCL_00760	1.31e-71	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
GEMNEGCL_00761	1e-210	dnaA	-	-	L	ko:K02313	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko03032,ko03036	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GEMNEGCL_00762	2.99e-114	tpx	1.11.1.15	-	O	ko:K11065	-	ko00000,ko01000	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
GEMNEGCL_00764	1.27e-42	-	-	-	K	-	-	-	Bacterial regulatory helix-turn-helix protein, lysR family
GEMNEGCL_00765	2.49e-145	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
GEMNEGCL_00767	4.3e-175	-	-	-	S	-	-	-	Alpha/beta hydrolase family
GEMNEGCL_00768	1.34e-34	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00771	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00772	6.59e-160	-	-	-	S	-	-	-	Protein of unknown function (DUF1275)
GEMNEGCL_00774	2.75e-43	-	-	-	G	ko:K03491	-	ko00000,ko03000	Mga helix-turn-helix domain
GEMNEGCL_00775	0.0	mngB	3.2.1.170	GH38	G	ko:K15524	-	ko00000,ko01000	Glycosyl hydrolases family 38 N-terminal domain
GEMNEGCL_00776	5.5e-64	-	-	-	V	-	-	-	N-6 DNA Methylase
GEMNEGCL_00778	2.19e-87	doc	-	-	S	ko:K07341	-	ko00000,ko02048	Fic/DOC family
GEMNEGCL_00779	2.78e-45	-	-	-	-	-	-	-	-
GEMNEGCL_00781	4.97e-29	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
GEMNEGCL_00783	2.62e-155	-	-	-	L	-	-	-	This gene contains a nucleotide ambiguity which may be the result of a sequencing error
GEMNEGCL_00785	5.73e-153	-	-	-	-	-	-	-	-
GEMNEGCL_00786	5.04e-154	-	-	-	G	-	-	-	Antibiotic biosynthesis monooxygenase
GEMNEGCL_00787	1.13e-126	-	-	-	-	-	-	-	-
GEMNEGCL_00788	6.93e-140	-	-	-	K	-	-	-	LysR substrate binding domain
GEMNEGCL_00789	4.04e-29	-	-	-	-	-	-	-	-
GEMNEGCL_00790	1.07e-287	-	-	-	S	-	-	-	Sterol carrier protein domain
GEMNEGCL_00791	1.76e-122	citX	2.7.7.61	-	HI	ko:K05964	ko02020,map02020	ko00000,ko00001,ko01000	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
GEMNEGCL_00792	2.01e-135	arcC	2.7.2.2	-	E	ko:K00926	ko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200	ko00000,ko00001,ko01000	Belongs to the carbamate kinase family
GEMNEGCL_00793	5.39e-84	argF	2.1.3.3	-	E	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
GEMNEGCL_00794	2.06e-298	arcA	3.5.3.6	-	E	ko:K01478	ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130	ko00000,ko00001,ko01000	Arginine
GEMNEGCL_00795	6.12e-177	lysR5	-	-	K	-	-	-	LysR substrate binding domain
GEMNEGCL_00796	0.0	-	-	-	P	-	-	-	Cation transporter/ATPase, N-terminus
GEMNEGCL_00797	4.97e-64	-	-	-	S	-	-	-	Metal binding domain of Ada
GEMNEGCL_00798	4.78e-261	-	-	-	S	-	-	-	Domain of unknown function (DUF389)
GEMNEGCL_00799	1.08e-223	-	2.7.7.47	-	H	ko:K00984	-	ko00000,ko01000,ko01504	Domain of unknown function (DUF4111)
GEMNEGCL_00800	0.000386	-	-	-	T	ko:K07720	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	Psort location Cytoplasmic, score 9.98
GEMNEGCL_00803	4.82e-144	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_00804	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00805	5.01e-55	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
GEMNEGCL_00807	4.39e-268	-	-	-	S	ko:K09963	-	ko00000	Bacterial protein of unknown function (DUF871)
GEMNEGCL_00808	4.95e-164	citG	2.4.2.52	-	H	ko:K05966	ko02020,map02020	ko00000,ko00001,ko01000	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
GEMNEGCL_00809	0.0	dtpT	-	-	U	ko:K03305	-	ko00000	amino acid peptide transporter
GEMNEGCL_00810	2.97e-163	-	-	-	S	-	-	-	PAS domain
GEMNEGCL_00812	4.83e-114	-	-	-	S	-	-	-	PFAM Archaeal ATPase
GEMNEGCL_00813	2.92e-115	-	-	-	S	-	-	-	PFAM Archaeal ATPase
GEMNEGCL_00814	7.02e-36	-	-	-	-	-	-	-	-
GEMNEGCL_00815	2.34e-105	menA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	UbiA prenyltransferase family
GEMNEGCL_00816	2.34e-76	mscL	-	-	M	ko:K03282	-	ko00000,ko02000	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
GEMNEGCL_00817	5.37e-72	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
GEMNEGCL_00818	0.0	mutS2	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
GEMNEGCL_00819	1.18e-66	yrzB	-	-	S	-	-	-	Belongs to the UPF0473 family
GEMNEGCL_00820	9.37e-96	yrrK	-	-	J	ko:K07447	-	ko00000,ko01000	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
GEMNEGCL_00821	5.32e-57	yrzL	-	-	S	-	-	-	Belongs to the UPF0297 family
GEMNEGCL_00822	0.0	alaS	6.1.1.7	-	J	ko:K01872	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
GEMNEGCL_00823	1.32e-305	cshB	3.6.4.13	-	JKL	ko:K05592,ko:K18692	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
GEMNEGCL_00824	3.16e-231	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHHA1 domain protein
GEMNEGCL_00825	4.29e-275	dinB	2.7.7.7	-	L	ko:K02346	-	ko00000,ko01000,ko03400	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
GEMNEGCL_00826	0.0	zwf	1.1.1.363, 1.1.1.49	-	G	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
GEMNEGCL_00827	7.58e-69	yajC	-	-	U	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
GEMNEGCL_00828	1.39e-237	ruvB	3.6.4.12	-	L	ko:K03551	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
GEMNEGCL_00829	3.89e-132	ruvA	3.6.4.12	-	L	ko:K03550	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
GEMNEGCL_00830	0.0	mutL	-	-	L	ko:K03572	ko03430,map03430	ko00000,ko00001,ko03400	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
GEMNEGCL_00831	0.0	mutS	-	-	L	ko:K03555	ko03430,map03430	ko00000,ko00001,ko03400	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
GEMNEGCL_00832	0.0	groL	-	-	O	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
GEMNEGCL_00833	1.06e-58	groS	-	-	O	ko:K04078	-	ko00000,ko03029,ko03110	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
GEMNEGCL_00834	2.79e-102	-	-	-	-	-	-	-	-
GEMNEGCL_00835	2.14e-231	-	-	-	M	-	-	-	CHAP domain
GEMNEGCL_00836	0.0	scrA	2.7.1.211	-	G	ko:K02808,ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
GEMNEGCL_00837	0.0	scrB	3.2.1.26	GH32	G	ko:K01193	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	invertase
GEMNEGCL_00838	2.14e-234	scrR	-	-	K	ko:K03484	-	ko00000,ko03000	helix_turn _helix lactose operon repressor
GEMNEGCL_00839	3.47e-285	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00840	3.85e-180	pnuC	-	-	H	ko:K03811	-	ko00000,ko02000	nicotinamide mononucleotide transporter
GEMNEGCL_00841	7.8e-10	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
GEMNEGCL_00842	3.43e-187	-	-	-	S	ko:K09704	-	ko00000	Metal-independent alpha-mannosidase (GH125)
GEMNEGCL_00843	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
GEMNEGCL_00845	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00846	1.24e-169	cobB	-	-	K	ko:K12410	-	ko00000,ko01000	SIR2 family
GEMNEGCL_00848	1.68e-52	-	-	-	S	-	-	-	Transglycosylase associated protein
GEMNEGCL_00849	7.05e-100	ltrA	-	-	S	-	-	-	Bacterial low temperature requirement A protein (LtrA)
GEMNEGCL_00850	1.23e-119	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
GEMNEGCL_00851	3.41e-85	-	-	-	I	-	-	-	Acyl-transferase
GEMNEGCL_00852	1.24e-78	arbx	-	-	M	-	-	-	Glycosyl transferase family 8
GEMNEGCL_00853	2.97e-110	-	-	-	-	-	-	-	-
GEMNEGCL_00854	3.94e-157	-	-	-	V	-	-	-	HNH endonuclease
GEMNEGCL_00856	1.15e-64	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
GEMNEGCL_00857	6.8e-50	-	-	-	S	-	-	-	Cytochrome B5
GEMNEGCL_00858	1.12e-214	arbZ	-	-	I	-	-	-	Phosphate acyltransferases
GEMNEGCL_00859	3.04e-232	-	-	-	M	-	-	-	Glycosyl transferase family 8
GEMNEGCL_00860	2.04e-183	-	-	-	M	-	-	-	Glycosyl transferase family 8
GEMNEGCL_00861	2e-16	der	-	-	S	ko:K03977	-	ko00000,ko03009	GTPase that plays an essential role in the late steps of ribosome biogenesis
GEMNEGCL_00862	4.44e-16	-	-	-	S	-	-	-	peptidoglycan catabolic process
GEMNEGCL_00863	4.42e-30	lepA	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
GEMNEGCL_00864	1.6e-33	fusA	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
GEMNEGCL_00865	7.4e-44	rpoC	2.7.7.6	-	K	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
GEMNEGCL_00866	1.21e-119	-	-	-	F	-	-	-	Nucleoside 2-deoxyribosyltransferase
GEMNEGCL_00867	1.01e-87	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
GEMNEGCL_00868	1.17e-11	ytoP	3.4.11.7	-	G	ko:K01261	-	ko00000,ko01000,ko01002	aminopeptidase
GEMNEGCL_00869	1.98e-49	-	-	-	-	-	-	-	-
GEMNEGCL_00870	6.33e-52	gyrB	5.99.1.3	-	L	ko:K02470	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
GEMNEGCL_00871	6.12e-48	rbtT	-	-	P	ko:K13021	-	ko00000,ko02000	Major Facilitator Superfamily
GEMNEGCL_00872	8.63e-61	sdaAA	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
GEMNEGCL_00873	1.93e-100	-	-	-	S	-	-	-	helix_turn_helix, Deoxyribose operon repressor
GEMNEGCL_00874	6.72e-177	-	-	-	EP	-	-	-	Plasmid replication protein
GEMNEGCL_00875	4.63e-32	-	-	-	-	-	-	-	-
GEMNEGCL_00876	1.04e-24	-	-	-	V	-	-	-	N-6 DNA Methylase
GEMNEGCL_00877	2.96e-22	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
GEMNEGCL_00905	1.72e-286	-	2.4.1.337	GT4	M	ko:K19002	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyl transferase 4-like domain
GEMNEGCL_00906	9.03e-257	cpoA	2.4.1.208	GT4	M	ko:K13677,ko:K13678	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
GEMNEGCL_00907	2.91e-217	mprF	-	-	S	ko:K07027	-	ko00000,ko02000	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
GEMNEGCL_00910	3.3e-42	-	-	-	-	-	-	-	-
GEMNEGCL_00911	3.98e-97	-	-	-	M	-	-	-	LysM domain
GEMNEGCL_00912	1.81e-31	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_00913	1.45e-116	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_00914	4.03e-75	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
GEMNEGCL_00915	1.91e-97	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
GEMNEGCL_00916	6.82e-292	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
GEMNEGCL_00917	4.24e-178	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
GEMNEGCL_00918	6.64e-94	-	-	-	-	-	-	-	-
GEMNEGCL_00919	1.06e-159	dgk2	2.7.1.76	-	F	ko:K10353	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000	deoxynucleoside kinase
GEMNEGCL_00920	9.85e-154	dak	2.7.1.76	-	F	ko:K10353	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000	deoxynucleoside kinase
GEMNEGCL_00921	1.15e-173	nagB	3.5.99.6	-	G	ko:K02564	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
GEMNEGCL_00922	4.04e-99	-	-	-	S	-	-	-	Aldo/keto reductase family
GEMNEGCL_00923	9.99e-89	-	-	-	S	-	-	-	Aldo/keto reductase family
GEMNEGCL_00924	3.63e-221	yufQ	-	-	S	ko:K02057	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
GEMNEGCL_00925	8.8e-262	mglC	-	-	S	ko:K02057	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
GEMNEGCL_00926	0.0	mglA	3.6.3.17	-	S	ko:K02056,ko:K06400	-	ko00000,ko00002,ko01000,ko02000	ABC transporter
GEMNEGCL_00927	4.57e-232	tcsA	-	-	S	ko:K02058,ko:K07335	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein PnrA-like
GEMNEGCL_00928	9.76e-256	tcsA	-	-	S	ko:K02058,ko:K07335	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein PnrA-like
GEMNEGCL_00929	5.9e-130	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
GEMNEGCL_00930	0.0	ppc	4.1.1.31	-	H	ko:K01595	ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
GEMNEGCL_00931	0.0	-	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_00932	5.26e-244	-	-	-	S	-	-	-	DUF218 domain
GEMNEGCL_00933	1.2e-155	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
GEMNEGCL_00934	2.86e-139	ywdE	-	-	K	ko:K20375	ko02024,map02024	ko00000,ko00001,ko03000	Transcriptional regulator
GEMNEGCL_00935	3.62e-202	-	-	-	EGP	-	-	-	Major facilitator Superfamily
GEMNEGCL_00936	1.05e-67	-	-	-	-	-	-	-	-
GEMNEGCL_00937	1.91e-200	mutR	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_00938	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
GEMNEGCL_00939	1.68e-55	yoeB	-	-	S	ko:K19158	-	ko00000,ko01000,ko02048	YoeB-like toxin of bacterial type II toxin-antitoxin system
GEMNEGCL_00940	2.49e-63	-	-	-	D	ko:K19159	-	ko00000,ko02048	Antitoxin component of a toxin-antitoxin (TA) module
GEMNEGCL_00941	5.71e-263	napA	-	-	P	-	-	-	Sodium/hydrogen exchanger family
GEMNEGCL_00942	0.0	cadA	-	-	P	-	-	-	P-type ATPase
GEMNEGCL_00943	3.41e-107	ykuL	-	-	S	-	-	-	(CBS) domain
GEMNEGCL_00944	5.11e-265	-	-	-	S	-	-	-	Membrane
GEMNEGCL_00945	1.42e-58	-	-	-	-	-	-	-	-
GEMNEGCL_00946	1.3e-26	-	-	-	S	-	-	-	D-Ala-teichoic acid biosynthesis protein
GEMNEGCL_00947	0.0	dltA	6.1.1.13	-	H	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
GEMNEGCL_00948	2.95e-304	dltB	-	-	M	ko:K03739	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	MBOAT, membrane-bound O-acyltransferase family
GEMNEGCL_00949	4.98e-48	dltC	6.1.1.13	-	J	ko:K14188	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
GEMNEGCL_00950	6.8e-316	dltD	-	-	M	ko:K03740	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
GEMNEGCL_00951	1.97e-227	pbpX2	-	-	V	-	-	-	Beta-lactamase
GEMNEGCL_00952	2.5e-172	-	-	-	S	-	-	-	Protein of unknown function (DUF975)
GEMNEGCL_00953	1.34e-183	lysA2	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
GEMNEGCL_00954	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
GEMNEGCL_00955	1.96e-49	-	-	-	-	-	-	-	-
GEMNEGCL_00956	0.0	ylbB	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
GEMNEGCL_00957	1.68e-161	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_00958	1.26e-303	pts13C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
GEMNEGCL_00959	7.86e-212	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
GEMNEGCL_00960	0.0	clpE	-	-	O	ko:K03697,ko:K04086	-	ko00000,ko03110	AAA domain (Cdc48 subfamily)
GEMNEGCL_00961	5.08e-149	sipS3	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
GEMNEGCL_00962	2.58e-310	aapA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
GEMNEGCL_00963	5.27e-314	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
GEMNEGCL_00964	1.28e-174	-	-	-	S	-	-	-	PFAM Archaeal ATPase
GEMNEGCL_00965	1.11e-59	-	-	-	S	-	-	-	PFAM Archaeal ATPase
GEMNEGCL_00966	7.29e-26	-	-	-	V	-	-	-	HNH endonuclease
GEMNEGCL_00967	1.62e-250	purD	6.3.4.13	-	F	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the GARS family
GEMNEGCL_00968	2.27e-191	hflC	-	-	O	ko:K04087	-	ko00000,ko00002,ko01000	prohibitin homologues
GEMNEGCL_00969	1.8e-66	-	-	-	L	ko:K07473	-	ko00000,ko02048	RelB antitoxin
GEMNEGCL_00970	2.39e-26	-	-	-	-	-	-	-	-
GEMNEGCL_00971	1.79e-245	-	-	-	S	-	-	-	Bacteriocin helveticin-J
GEMNEGCL_00972	1.86e-197	-	-	-	M	-	-	-	Peptidase family M1 domain
GEMNEGCL_00973	9.84e-108	-	-	-	L	-	-	-	Resolvase, N-terminal
GEMNEGCL_00974	4.5e-107	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
GEMNEGCL_00975	4.2e-93	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
GEMNEGCL_00976	7.29e-220	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_00977	3.31e-299	mepA	-	-	V	ko:K18908	-	ko00000,ko00002,ko01504,ko02000	MATE efflux family protein
GEMNEGCL_00978	3.8e-315	murC	6.3.2.8	-	M	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Belongs to the MurCDEF family
GEMNEGCL_00979	2.05e-248	-	-	-	-	-	-	-	-
GEMNEGCL_00980	4.18e-155	XK27_10290	-	-	J	ko:K06878	-	ko00000	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
GEMNEGCL_00981	1.35e-71	ytpP	-	-	CO	-	-	-	Thioredoxin
GEMNEGCL_00982	0.0	pepN	3.4.11.2	-	E	ko:K01256	ko00480,ko01100,map00480,map01100	ko00000,ko00001,ko01000,ko01002	aminopeptidase
GEMNEGCL_00983	2.2e-79	lysM	-	-	M	-	-	-	LysM domain
GEMNEGCL_00984	7.62e-223	-	-	-	-	-	-	-	-
GEMNEGCL_00985	7.61e-288	mdtG2	-	-	EGP	ko:K08161	-	ko00000,ko02000	Transporter, major facilitator family protein
GEMNEGCL_00986	5.95e-114	ymdB	-	-	S	-	-	-	Macro domain protein
GEMNEGCL_00992	1.45e-74	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_00993	1.39e-197	malG	-	-	P	ko:K15772	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
GEMNEGCL_00994	0.0	malF	-	-	P	ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
GEMNEGCL_00995	5.5e-282	-	-	-	G	ko:K15770	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
GEMNEGCL_00996	7e-267	msmX	-	-	P	ko:K10112	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
GEMNEGCL_00997	1.89e-149	pgmB	5.4.2.6	-	S	ko:K01838	ko00500,map00500	ko00000,ko00001,ko01000	beta-phosphoglucomutase
GEMNEGCL_00998	0.0	mapA	2.4.1.8	GH65	G	ko:K00691	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	hydrolase, family 65, central catalytic
GEMNEGCL_00999	0.0	nplT	3.2.1.133, 3.2.1.135, 3.2.1.54	GH13	G	ko:K01208	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 13 family
GEMNEGCL_01000	0.0	malA1	3.2.1.10, 3.2.1.20	GH13,GH31	G	ko:K01182,ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain
GEMNEGCL_01001	2.91e-99	XK27_04775	-	-	S	ko:K09155	-	ko00000	PAS domain
GEMNEGCL_01002	3.15e-259	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
GEMNEGCL_01003	5.23e-229	yvdE	-	-	K	-	-	-	helix_turn _helix lactose operon repressor
GEMNEGCL_01004	3.56e-186	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
GEMNEGCL_01005	0.0	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
GEMNEGCL_01006	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_01007	6.09e-121	-	-	-	-	-	-	-	-
GEMNEGCL_01009	7.04e-159	-	-	-	M	ko:K14193	ko05150,map05150	ko00000,ko00001	Iron Transport-associated domain
GEMNEGCL_01010	2.07e-203	isdE	-	-	P	ko:K02016	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Periplasmic binding protein
GEMNEGCL_01011	1.55e-201	isdF	-	-	U	ko:K02015	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
GEMNEGCL_01012	1.49e-178	-	3.6.3.34	-	HP	ko:K02013	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	abc transporter atp-binding protein
GEMNEGCL_01013	2.22e-60	hupB2	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
GEMNEGCL_01014	2.74e-69	-	-	-	S	ko:K19157	-	ko00000,ko01000,ko02048	Bacterial toxin of type II toxin-antitoxin system, YafQ
GEMNEGCL_01015	9.43e-52	-	-	-	S	ko:K07473	-	ko00000,ko02048	RelB antitoxin
GEMNEGCL_01016	7.04e-218	-	-	-	G	-	-	-	BadF/BadG/BcrA/BcrD ATPase family
GEMNEGCL_01017	0.0	-	-	-	S	-	-	-	membrane
GEMNEGCL_01018	0.0	pbp2b	-	-	M	ko:K00687,ko:K12553,ko:K21465,ko:K21466	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
GEMNEGCL_01019	6.25e-29	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
GEMNEGCL_01020	7.92e-126	fthC	6.3.3.2	-	H	ko:K01934	ko00670,ko01100,map00670,map01100	ko00000,ko00001,ko01000	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
GEMNEGCL_01021	9.32e-154	gluP	3.4.21.105	-	S	ko:K19225	-	ko00000,ko01000,ko01002	Rhomboid family
GEMNEGCL_01022	1e-47	yqgQ	-	-	S	-	-	-	Bacterial protein of unknown function (DUF910)
GEMNEGCL_01023	4.95e-89	yqhL	-	-	P	-	-	-	Rhodanese-like protein
GEMNEGCL_01024	1.82e-214	miaA	2.5.1.75	-	F	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	ko00000,ko00001,ko01000,ko01006,ko03016	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
GEMNEGCL_01025	5.88e-286	ynbB	-	-	P	-	-	-	aluminum resistance
GEMNEGCL_01026	0.0	glnA	6.3.1.2	-	E	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	ko00000,ko00001,ko01000,ko04147	glutamine synthetase
GEMNEGCL_01027	1.37e-218	-	-	-	-	-	-	-	-
GEMNEGCL_01028	3.46e-204	-	-	-	-	-	-	-	-
GEMNEGCL_01029	2.79e-19	-	-	-	S	-	-	-	HicA toxin of bacterial toxin-antitoxin,
GEMNEGCL_01030	7.81e-42	-	-	-	S	-	-	-	protein encoded in hypervariable junctions of pilus gene clusters
GEMNEGCL_01032	6.78e-47	-	-	-	-	-	-	-	-
GEMNEGCL_01033	2.48e-197	-	-	-	S	-	-	-	interspecies interaction between organisms
GEMNEGCL_01034	1.28e-09	-	-	-	S	-	-	-	PFAM HicB family
GEMNEGCL_01035	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
GEMNEGCL_01036	1.57e-84	-	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
GEMNEGCL_01037	5.61e-156	nanA	4.1.3.3	-	EM	ko:K01639	ko00520,map00520	ko00000,ko00001,ko01000	Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate
GEMNEGCL_01038	1.03e-112	nanK	-	-	GK	-	-	-	ROK family
GEMNEGCL_01039	3.74e-70	-	-	-	G	-	-	-	Xylose isomerase domain protein TIM barrel
GEMNEGCL_01040	6.95e-165	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
GEMNEGCL_01041	6.48e-279	-	-	-	E	ko:K03307	-	ko00000	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
GEMNEGCL_01042	2.82e-84	cah	3.1.1.41	-	Q	ko:K01060	ko00311,ko01130,map00311,map01130	ko00000,ko00001,ko01000	Acetyl xylan esterase (AXE1)
GEMNEGCL_01043	1.48e-28	axe1	3.1.1.41	-	Q	ko:K01060	ko00311,ko01130,map00311,map01130	ko00000,ko00001,ko01000	acetyl xylan esterase
GEMNEGCL_01044	1.19e-141	nanE	5.1.3.9	-	G	ko:K01788	ko00520,map00520	ko00000,ko00001,ko01000	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
GEMNEGCL_01045	1.1e-155	nagA	3.5.1.25	-	G	ko:K01443	ko00520,ko01130,map00520,map01130	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. NagA family
GEMNEGCL_01046	3.07e-136	-	-	-	S	-	-	-	Alpha/beta hydrolase family
GEMNEGCL_01047	6.81e-140	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
GEMNEGCL_01048	5.34e-143	crt	4.2.1.17	-	I	ko:K01715	ko00650,ko01200,map00650,map01200	ko00000,ko00001,ko01000	Enoyl-CoA hydratase/isomerase
GEMNEGCL_01049	1.02e-192	fabK	1.3.1.9	-	S	ko:K02371	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Nitronate monooxygenase
GEMNEGCL_01050	8.45e-102	pct	2.8.3.1	-	I	ko:K01026	ko00620,ko00640,ko00643,ko01100,ko01120,map00620,map00640,map00643,map01100,map01120	ko00000,ko00001,ko01000	Coenzyme A transferase
GEMNEGCL_01051	5.53e-203	pct	2.8.3.1	-	I	ko:K01026	ko00620,ko00640,ko00643,ko01100,ko01120,map00620,map00640,map00643,map01100,map01120	ko00000,ko00001,ko01000	Coenzyme A transferase
GEMNEGCL_01052	5.38e-184	-	-	-	K	-	-	-	LysR substrate binding domain
GEMNEGCL_01053	1.47e-70	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
GEMNEGCL_01054	1.41e-97	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
GEMNEGCL_01056	1.69e-94	coaA	2.7.1.33	-	F	ko:K00867	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Pantothenic acid kinase
GEMNEGCL_01057	5.56e-72	ylxM	-	-	S	ko:K09787	-	ko00000	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
GEMNEGCL_01058	5.7e-291	ffh	3.6.5.4	-	U	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko01000,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
GEMNEGCL_01059	6.78e-60	rpsP	-	-	J	ko:K02959	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bS16 family
GEMNEGCL_01060	1.71e-121	rimM	-	-	J	ko:K02860	-	ko00000,ko03009	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
GEMNEGCL_01061	6.91e-175	trmD	2.1.1.228	-	J	ko:K00554	-	ko00000,ko01000,ko03016	Belongs to the RNA methyltransferase TrmD family
GEMNEGCL_01062	1.64e-74	rplS	-	-	J	ko:K02884	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
GEMNEGCL_01063	1.66e-268	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_01064	6.64e-154	ung2	3.2.2.27	-	L	ko:K21929	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Uracil-DNA glycosylase
GEMNEGCL_01065	6.01e-147	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase family
GEMNEGCL_01066	3.45e-144	-	-	-	L	-	-	-	Resolvase, N-terminal
GEMNEGCL_01067	2.58e-259	-	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
GEMNEGCL_01069	9.86e-146	lexA	3.4.21.88	-	K	ko:K01356	-	ko00000,ko00002,ko01000,ko01002,ko03400	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
GEMNEGCL_01070	4.16e-51	ynzC	-	-	S	-	-	-	UPF0291 protein
GEMNEGCL_01071	1.3e-40	XK26_06720	-	-	S	ko:K09976	-	ko00000	Uncharacterised protein family (UPF0154)
GEMNEGCL_01072	0.0	mdlA	-	-	V	ko:K06148,ko:K18889	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
GEMNEGCL_01073	0.0	mdlB	-	-	V	ko:K06147,ko:K18890	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
GEMNEGCL_01074	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
GEMNEGCL_01075	4.94e-292	cfa	2.1.1.79	-	M	ko:K00574	-	ko00000,ko01000	cyclopropane-fatty-acyl-phospholipid synthase
GEMNEGCL_01076	1.65e-151	plsC	2.3.1.51	-	I	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Acyltransferase
GEMNEGCL_01077	2.03e-251	yabB	2.1.1.223	-	L	ko:K07461,ko:K15460	-	ko00000,ko01000,ko03016	Methyltransferase small domain
GEMNEGCL_01078	2.21e-180	rpsB	-	-	J	ko:K02967	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS2 family
GEMNEGCL_01079	1.76e-235	tsf	-	-	J	ko:K02357	-	ko00000,ko03012,ko03029	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
GEMNEGCL_01080	5.86e-168	pyrH	2.7.4.22	-	F	ko:K09903	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphorylation of UMP to UDP
GEMNEGCL_01081	1.22e-121	frr	-	-	J	ko:K02838	-	ko00000,ko03012	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
GEMNEGCL_01082	6.38e-178	uppS	2.5.1.31	-	H	ko:K00806	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
GEMNEGCL_01083	3.93e-181	cdsA	2.7.7.41	-	I	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the CDS family
GEMNEGCL_01084	6.38e-254	rseP	-	-	M	ko:K11749	ko02024,ko04112,map02024,map04112	ko00000,ko00001,ko01000,ko01002	zinc metalloprotease
GEMNEGCL_01085	0.0	proS	6.1.1.15	-	J	ko:K01881	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
GEMNEGCL_01086	0.0	polC	2.7.7.7	-	L	ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
GEMNEGCL_01087	3.4e-108	rimP	-	-	J	ko:K09748	-	ko00000,ko03009	Required for maturation of 30S ribosomal subunits
GEMNEGCL_01088	1.19e-259	nusA	-	-	K	ko:K02600	-	ko00000,ko03009,ko03021	Participates in both transcription termination and antitermination
GEMNEGCL_01089	3.75e-63	ylxR	-	-	K	ko:K07742	-	ko00000	Protein of unknown function (DUF448)
GEMNEGCL_01090	1.61e-64	ylxQ	-	-	J	-	-	-	ribosomal protein
GEMNEGCL_01091	0.0	infB	-	-	J	ko:K02519	-	ko00000,ko03012,ko03029	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
GEMNEGCL_01092	1.67e-79	rbfA	-	-	J	ko:K02834	-	ko00000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
GEMNEGCL_01093	1.64e-198	truB	5.4.99.25	-	J	ko:K03177,ko:K03483	-	ko00000,ko01000,ko03000,ko03016	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
GEMNEGCL_01094	5.35e-223	ribF	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the ribF family
GEMNEGCL_01095	2.56e-248	hrcA	-	-	K	ko:K03705	-	ko00000,ko03000	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
GEMNEGCL_01096	3.74e-109	grpE	-	-	O	ko:K03687	-	ko00000,ko03029,ko03110	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
GEMNEGCL_01097	0.0	dnaK	-	-	O	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Heat shock 70 kDa protein
GEMNEGCL_01098	5.88e-278	dnaJ	-	-	O	ko:K03686	-	ko00000,ko03029,ko03110	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
GEMNEGCL_01099	2.57e-108	licC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
GEMNEGCL_01100	8.08e-160	licC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
GEMNEGCL_01101	1.25e-17	-	-	-	-	-	-	-	-
GEMNEGCL_01102	2.77e-220	pphA	3.1.3.16	-	T	ko:K07313	-	ko00000,ko01000	Calcineurin-like phosphoesterase
GEMNEGCL_01103	1.04e-41	-	-	-	-	-	-	-	-
GEMNEGCL_01105	3.65e-90	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
GEMNEGCL_01106	1.08e-145	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose acetyltransferase
GEMNEGCL_01107	4.51e-77	psiE	-	-	S	ko:K13256	-	ko00000	Phosphate-starvation-inducible E
GEMNEGCL_01109	6.58e-175	nfrA	1.5.1.38	-	C	ko:K19285	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	nitroreductase
GEMNEGCL_01110	1.58e-284	amt	-	-	P	ko:K03320	-	ko00000,ko02000	ammonium transporter
GEMNEGCL_01111	7.82e-80	-	-	-	-	-	-	-	-
GEMNEGCL_01112	0.0	-	-	-	L	ko:K03724	-	ko00000,ko01000,ko03400	DEAD DEAH box helicase
GEMNEGCL_01113	4.13e-310	-	-	-	P	-	-	-	P-loop Domain of unknown function (DUF2791)
GEMNEGCL_01114	0.0	-	-	-	S	-	-	-	TerB-C domain
GEMNEGCL_01115	0.0	pckA	4.1.1.49	-	H	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Phosphoenolpyruvate carboxykinase
GEMNEGCL_01116	0.0	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
GEMNEGCL_01117	6.94e-202	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_01118	9.05e-78	apfA	3.6.1.61	-	F	ko:K18445	ko00230,map00230	ko00000,ko00001,ko01000	Nudix hydrolase
GEMNEGCL_01119	3.36e-42	-	-	-	-	-	-	-	-
GEMNEGCL_01120	2.53e-100	-	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Carboxymuconolactone decarboxylase family
GEMNEGCL_01121	5.26e-36	-	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Carboxymuconolactone decarboxylase family
GEMNEGCL_01122	2.7e-277	mtlD	1.1.1.17	-	C	ko:K00009	ko00051,map00051	ko00000,ko00001,ko01000	mannitol-1-phosphate 5-dehydrogenase activity
GEMNEGCL_01123	5.75e-103	mtlF	2.7.1.197	-	G	ko:K02798	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
GEMNEGCL_01124	2.34e-147	mtlA	2.7.1.197	-	G	ko:K02799,ko:K02800	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
GEMNEGCL_01125	3.13e-249	mtlA	2.7.1.197	-	G	ko:K02799,ko:K02800	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
GEMNEGCL_01126	0.0	mtlR	-	-	K	ko:K03483	-	ko00000,ko03000	Mga helix-turn-helix domain
GEMNEGCL_01127	0.0	glmS	2.6.1.16	-	M	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	ko00000,ko00001,ko01000,ko01002	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
GEMNEGCL_01128	1.56e-112	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
GEMNEGCL_01129	2.7e-133	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
GEMNEGCL_01130	0.0	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
GEMNEGCL_01131	1.13e-308	cycA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
GEMNEGCL_01132	7.06e-111	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
GEMNEGCL_01133	2.07e-203	-	-	-	K	-	-	-	Transcriptional regulator
GEMNEGCL_01134	1.31e-81	-	-	-	S	-	-	-	Domain of unknown function (DUF956)
GEMNEGCL_01135	3.51e-222	manN	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	system, mannose fructose sorbose family IID component
GEMNEGCL_01136	9.65e-181	manY	-	-	G	ko:K02746,ko:K02795	ko00051,ko00052,ko00520,ko01100,ko02060,map00051,map00052,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system
GEMNEGCL_01137	4.5e-235	manL	2.7.1.191	-	G	ko:K02793,ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
GEMNEGCL_01139	2.78e-32	-	-	-	S	-	-	-	Domain of unknown function (DUF771)
GEMNEGCL_01142	8.12e-08	-	-	-	K	-	-	-	Tetratricopeptide repeat
GEMNEGCL_01144	2.2e-68	-	-	-	S	-	-	-	Protein of unknown function (DUF1351)
GEMNEGCL_01145	3.7e-55	-	-	-	S	-	-	-	ERF superfamily
GEMNEGCL_01147	3.8e-13	ansR	-	-	K	-	-	-	Transcriptional regulator
GEMNEGCL_01149	2.02e-20	radC	-	-	E	ko:K03630	-	ko00000	Belongs to the UPF0758 family
GEMNEGCL_01158	5.03e-88	-	-	-	S	-	-	-	ORF6C domain
GEMNEGCL_01160	4.03e-47	-	-	-	S	-	-	-	VRR_NUC
GEMNEGCL_01167	3.48e-27	-	-	-	S	-	-	-	N-methyltransferase activity
GEMNEGCL_01170	1.16e-231	-	-	-	S	-	-	-	Terminase-like family
GEMNEGCL_01171	8.21e-111	-	-	-	S	ko:K09961	-	ko00000	Protein of unknown function (DUF1073)
GEMNEGCL_01172	7.62e-69	-	-	-	S	-	-	-	Phage Mu protein F like protein
GEMNEGCL_01173	9.61e-28	-	-	-	S	-	-	-	Lysin motif
GEMNEGCL_01174	4.2e-72	-	-	-	S	ko:K09960	-	ko00000	Uncharacterized protein conserved in bacteria (DUF2213)
GEMNEGCL_01175	6.37e-25	-	-	-	-	-	-	-	-
GEMNEGCL_01177	5.49e-36	-	-	-	S	-	-	-	Protein of unknown function (DUF4054)
GEMNEGCL_01178	5.56e-22	-	-	-	-	-	-	-	-
GEMNEGCL_01181	2.86e-168	-	-	-	S	-	-	-	Protein of unknown function (DUF3383)
GEMNEGCL_01184	1.69e-236	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
GEMNEGCL_01185	3.85e-54	-	-	-	M	-	-	-	LysM domain
GEMNEGCL_01186	9.82e-61	-	-	-	-	-	-	-	-
GEMNEGCL_01187	2.3e-128	-	-	-	-	-	-	-	-
GEMNEGCL_01188	4.1e-49	-	-	-	-	-	-	-	-
GEMNEGCL_01189	1.55e-40	-	-	-	-	-	-	-	-
GEMNEGCL_01190	8.27e-140	-	-	-	S	-	-	-	Baseplate J-like protein
GEMNEGCL_01192	3.95e-17	-	-	-	S	-	-	-	N-acetylmuramoyl-L-alanine amidase activity
GEMNEGCL_01195	4.17e-54	-	-	-	-	-	-	-	-
GEMNEGCL_01196	2.12e-27	-	-	-	S	-	-	-	Phage uncharacterised protein (Phage_XkdX)
GEMNEGCL_01199	1.81e-26	-	-	-	-	-	-	-	-
GEMNEGCL_01200	1.24e-38	-	-	-	-	-	-	-	-
GEMNEGCL_01201	6.18e-220	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
GEMNEGCL_01202	5.3e-32	-	-	-	-	-	-	-	-
GEMNEGCL_01203	7.96e-46	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
GEMNEGCL_01204	2.63e-194	int3	-	-	L	-	-	-	Belongs to the 'phage' integrase family
GEMNEGCL_01207	3.05e-19	-	-	-	K	-	-	-	Helix-turn-helix domain
GEMNEGCL_01208	1.15e-121	apt	2.4.2.7	-	F	ko:K00759	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000,ko04147	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
GEMNEGCL_01209	0.0	recJ	-	-	L	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	ko00000,ko00001,ko01000,ko03400	Single-stranded-DNA-specific exonuclease RecJ
GEMNEGCL_01210	7e-131	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	sortase family
GEMNEGCL_01214	2.16e-220	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
GEMNEGCL_01215	2.65e-40	-	-	-	-	-	-	-	-
GEMNEGCL_01216	1.81e-24	-	-	-	-	-	-	-	-
GEMNEGCL_01219	6.09e-29	-	-	-	S	-	-	-	Phage uncharacterised protein (Phage_XkdX)
GEMNEGCL_01220	1.6e-89	-	-	-	-	-	-	-	-
GEMNEGCL_01227	3.02e-87	-	-	-	-	-	-	-	-
GEMNEGCL_01228	8.74e-33	-	-	-	-	-	-	-	-
GEMNEGCL_01231	5.96e-158	-	-	-	S	-	-	-	Baseplate J-like protein
GEMNEGCL_01232	2.75e-42	-	-	-	-	-	-	-	-
GEMNEGCL_01233	1.68e-58	-	-	-	-	-	-	-	-
GEMNEGCL_01234	9.61e-130	-	-	-	-	-	-	-	-
GEMNEGCL_01235	6.91e-61	-	-	-	-	-	-	-	-
GEMNEGCL_01236	7.54e-70	-	-	-	M	-	-	-	LysM domain
GEMNEGCL_01237	0.0	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
GEMNEGCL_01240	3.14e-72	-	-	-	-	-	-	-	-
GEMNEGCL_01241	6.1e-191	-	-	-	S	-	-	-	Protein of unknown function (DUF3383)
GEMNEGCL_01242	1.6e-68	-	-	-	-	-	-	-	-
GEMNEGCL_01243	4.42e-60	-	-	-	-	-	-	-	-
GEMNEGCL_01244	2.18e-96	-	-	-	-	-	-	-	-
GEMNEGCL_01246	1.11e-182	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2184)
GEMNEGCL_01247	3.08e-76	-	-	-	-	-	-	-	-
GEMNEGCL_01248	3.82e-132	-	-	-	S	ko:K09960	-	ko00000	Uncharacterized protein conserved in bacteria (DUF2213)
GEMNEGCL_01249	3.12e-35	-	-	-	S	-	-	-	Lysin motif
GEMNEGCL_01250	3.94e-125	-	-	-	S	-	-	-	Phage Mu protein F like protein
GEMNEGCL_01251	7.5e-177	-	-	-	S	ko:K09961	-	ko00000	Protein of unknown function (DUF1073)
GEMNEGCL_01252	2.4e-291	-	-	-	S	-	-	-	Terminase-like family
GEMNEGCL_01253	7.11e-50	-	-	-	L	ko:K07474	-	ko00000	Terminase small subunit
GEMNEGCL_01255	1.04e-39	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.87
GEMNEGCL_01264	1.51e-10	-	-	-	-	-	-	-	-
GEMNEGCL_01265	2.98e-52	-	-	-	L	-	-	-	Endodeoxyribonuclease RusA
GEMNEGCL_01273	5.53e-81	-	-	-	Q	-	-	-	DNA (cytosine-5-)-methyltransferase activity
GEMNEGCL_01279	1.89e-22	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
GEMNEGCL_01280	3.55e-51	-	-	-	S	-	-	-	Protein of unknown function (DUF1071)
GEMNEGCL_01284	1.08e-05	-	-	-	K	-	-	-	Helix-turn-helix domain
GEMNEGCL_01288	9.34e-109	-	-	-	S	-	-	-	DNA binding
GEMNEGCL_01291	8.77e-22	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
GEMNEGCL_01294	2.37e-13	-	-	-	S	-	-	-	Membrane
GEMNEGCL_01295	2.57e-225	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
GEMNEGCL_01296	1.57e-275	-	-	-	M	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
GEMNEGCL_01297	4.13e-38	-	-	-	M	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
GEMNEGCL_01299	2.23e-189	-	-	-	S	-	-	-	Putative ABC-transporter type IV
GEMNEGCL_01301	4.11e-124	potE	-	-	E	-	-	-	thought to be involved in transport amino acids across the membrane
GEMNEGCL_01303	2.67e-35	-	-	-	K	ko:K07729	-	ko00000,ko03000	Helix-turn-helix XRE-family like proteins
GEMNEGCL_01304	6.66e-27	-	-	-	S	-	-	-	CAAX protease self-immunity
GEMNEGCL_01306	1.25e-94	-	-	-	K	-	-	-	Helix-turn-helix domain
GEMNEGCL_01307	2.72e-15	-	-	-	-	-	-	-	-
GEMNEGCL_01308	4.56e-78	celC	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose Cellobiose specific IIA subunit
GEMNEGCL_01309	1.32e-74	pts20B	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
GEMNEGCL_01310	1.33e-165	-	-	-	K	ko:K03492	-	ko00000,ko03000	UTRA domain
GEMNEGCL_01311	0.0	pbg4	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
GEMNEGCL_01312	2.49e-117	alkD	-	-	L	-	-	-	DNA alkylation repair enzyme
GEMNEGCL_01313	7.39e-225	iunH	3.2.2.1	-	F	ko:K01239	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	inosine-uridine preferring nucleoside hydrolase
GEMNEGCL_01314	3.85e-109	-	-	-	-	-	-	-	-
GEMNEGCL_01315	3.04e-53	-	-	-	C	-	-	-	FMN_bind
GEMNEGCL_01316	0.0	-	-	-	I	-	-	-	Protein of unknown function (DUF2974)
GEMNEGCL_01317	4.2e-249	pbpX1	-	-	V	-	-	-	Beta-lactamase
GEMNEGCL_01318	1.05e-253	asd	1.2.1.11	-	E	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
GEMNEGCL_01319	7.42e-276	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
GEMNEGCL_01320	6.89e-185	dapB	1.17.1.8	-	E	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
GEMNEGCL_01321	3.66e-225	dapA	4.3.3.7	-	E	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
GEMNEGCL_01322	8.08e-281	hipO	3.5.1.47	-	E	ko:K05823	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
GEMNEGCL_01323	8.62e-105	dapH	2.3.1.117, 2.3.1.89	-	E	ko:K00674,ko:K05822	ko00300,ko01100,ko01110,ko01120,ko01230,map00300,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
GEMNEGCL_01324	1.39e-312	lysA	4.1.1.20	-	E	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
GEMNEGCL_01325	0.0	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
GEMNEGCL_01326	6.25e-246	dapF	5.1.1.7	-	E	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
GEMNEGCL_01327	1.27e-220	potE	-	-	E	-	-	-	Amino Acid
GEMNEGCL_01328	2.58e-48	potE	-	-	E	-	-	-	Amino Acid
GEMNEGCL_01329	1.59e-136	engB	-	-	D	ko:K03978	-	ko00000,ko03036	Necessary for normal cell division and for the maintenance of normal septation
GEMNEGCL_01330	3.04e-297	clpX	-	-	O	ko:K03544	ko04112,map04112	ko00000,ko00001,ko03110	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
GEMNEGCL_01331	1.09e-292	tig	-	-	D	ko:K03545	-	ko00000	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
GEMNEGCL_01332	5.76e-287	tuf	-	-	J	ko:K02358,ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03012,ko03029,ko04147	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GEMNEGCL_01333	5.43e-191	-	-	-	-	-	-	-	-
GEMNEGCL_01334	0.0	rnjB	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
GEMNEGCL_01335	7.11e-57	rpsO	-	-	J	ko:K02956	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
GEMNEGCL_01336	6.28e-47	rpsT	-	-	J	ko:K02968	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 16S ribosomal RNA
GEMNEGCL_01337	2.57e-226	holA	2.7.7.7	-	L	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III delta subunit
GEMNEGCL_01338	0.0	comEC	-	-	S	ko:K02238	-	ko00000,ko00002,ko02044	Competence protein ComEC
GEMNEGCL_01339	2.7e-126	comEA	-	-	L	ko:K02237	-	ko00000,ko00002,ko02044	Competence protein ComEA
GEMNEGCL_01340	1.16e-243	lon	-	-	T	ko:K07177	ko02024,map02024	ko00000,ko00001,ko01002	Belongs to the peptidase S16 family
GEMNEGCL_01341	2.88e-106	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
GEMNEGCL_01342	2.12e-125	rsmD	2.1.1.171	-	L	ko:K08316	-	ko00000,ko01000,ko03009	RNA methyltransferase, RsmD family
GEMNEGCL_01343	9.94e-71	ylbG	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2129)
GEMNEGCL_01344	9.6e-269	ftsW	-	-	D	ko:K03588	ko04112,map04112	ko00000,ko00001,ko02000,ko03036	Belongs to the SEDS family
GEMNEGCL_01345	0.0	typA	-	-	T	ko:K06207	-	ko00000	GTP-binding protein TypA
GEMNEGCL_01346	9.73e-132	def	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
GEMNEGCL_01347	1.27e-311	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
GEMNEGCL_01348	8.12e-60	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
GEMNEGCL_01349	0.0	sufB	-	-	O	ko:K07033,ko:K09014	-	ko00000	assembly protein SufB
GEMNEGCL_01350	6.98e-78	nifU	-	-	C	ko:K04488	-	ko00000	SUF system FeS assembly protein, NifU family
GEMNEGCL_01351	1.39e-224	sufS	2.8.1.7, 4.4.1.16	-	E	ko:K11717	ko00450,ko01100,map00450,map01100	ko00000,ko00001,ko01000	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
GEMNEGCL_01352	6.22e-232	sufD	-	-	O	ko:K07033,ko:K09015	-	ko00000	FeS assembly protein SufD
GEMNEGCL_01353	4.43e-179	sufC	-	-	O	ko:K09013	-	ko00000,ko02000	FeS assembly ATPase SufC
GEMNEGCL_01354	1.51e-154	-	-	-	C	-	-	-	2Fe-2S iron-sulfur cluster binding domain
GEMNEGCL_01355	1.24e-188	-	5.2.1.13	-	Q	ko:K09835	ko00906,ko01100,ko01110,map00906,map01100,map01110	ko00000,ko00001,ko00002,ko01000	HI0933-like protein
GEMNEGCL_01356	7.13e-67	-	-	-	K	-	-	-	helix_turn_helix gluconate operon transcriptional repressor
GEMNEGCL_01357	5.71e-230	-	3.6.4.12	-	K	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Putative ATP-dependent DNA helicase recG C-terminal
GEMNEGCL_01358	2.36e-213	adh2	1.1.1.1	-	E	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	alcohol dehydrogenase
GEMNEGCL_01359	2.24e-71	ykoJ	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
GEMNEGCL_01360	1.5e-176	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
GEMNEGCL_01362	3.68e-176	ribD	1.1.1.193, 3.5.4.26	-	H	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	ko00000,ko00001,ko00002,ko01000	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GEMNEGCL_01363	3.05e-110	ribE	2.5.1.9	-	H	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Riboflavin synthase
GEMNEGCL_01364	3.61e-288	ribBA	3.5.4.25, 4.1.99.12	-	H	ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate
GEMNEGCL_01365	1.91e-103	ribH	2.5.1.78	-	H	ko:K00794	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin
GEMNEGCL_01366	2.43e-118	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
GEMNEGCL_01367	1.16e-13	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
GEMNEGCL_01368	1.04e-211	-	-	-	S	-	-	-	Protein of unknown function (DUF2974)
GEMNEGCL_01369	8.58e-140	glnP	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
GEMNEGCL_01370	7.42e-123	glnM	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
GEMNEGCL_01371	1.5e-190	glnH	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_01372	1.19e-174	glnQ	-	-	E	ko:K10041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_01373	6.42e-147	udk	2.7.1.48	-	F	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Zeta toxin
GEMNEGCL_01374	6.3e-191	-	-	-	G	-	-	-	MFS/sugar transport protein
GEMNEGCL_01375	1.34e-106	-	-	-	G	-	-	-	MFS/sugar transport protein
GEMNEGCL_01376	7.3e-131	ykoE	-	-	S	ko:K16925	-	ko00000,ko00002,ko02000	ABC-type cobalt transport system, permease component
GEMNEGCL_01377	0.0	XK27_09605	-	-	V	ko:K18892	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter transmembrane region
GEMNEGCL_01378	0.0	XK27_09600	-	-	V	ko:K06147,ko:K18891	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_01379	2.53e-106	-	-	-	K	-	-	-	Transcriptional regulator, MarR family
GEMNEGCL_01380	2.05e-188	peb1A	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
GEMNEGCL_01381	6.43e-167	-	-	-	F	-	-	-	glutamine amidotransferase
GEMNEGCL_01382	3.41e-312	steT	-	-	E	ko:K03294	-	ko00000	amino acid
GEMNEGCL_01383	7.64e-307	steT	-	-	E	ko:K03294	-	ko00000	amino acid
GEMNEGCL_01384	1.13e-177	-	-	-	-	-	-	-	-
GEMNEGCL_01385	8.85e-121	-	-	-	M	-	-	-	LysM domain protein
GEMNEGCL_01386	6.42e-110	-	-	-	C	-	-	-	Aldo keto reductase
GEMNEGCL_01387	9.4e-232	lacX	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Aldose 1-epimerase
GEMNEGCL_01388	1.4e-313	hslU	-	-	O	ko:K03667	-	ko00000,ko03110	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
GEMNEGCL_01389	4.67e-116	hslV	3.4.25.2	-	O	ko:K01419	-	ko00000,ko01000,ko01002	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
GEMNEGCL_01390	5.99e-180	xerC	-	-	D	ko:K03733,ko:K04763	-	ko00000,ko03036	Phage integrase, N-terminal SAM-like domain
GEMNEGCL_01391	8.35e-315	trmFO	2.1.1.74	-	J	ko:K04094	-	ko00000,ko01000,ko03016,ko03036	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
GEMNEGCL_01392	0.0	topA	5.99.1.2	-	L	ko:K03168	-	ko00000,ko01000,ko03032,ko03400	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
GEMNEGCL_01393	1.5e-195	dprA	-	-	LU	ko:K04096	-	ko00000	DNA protecting protein DprA
GEMNEGCL_01394	1e-168	rnhB	3.1.26.4	-	L	ko:K03470	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
GEMNEGCL_01395	2.15e-198	rbgA	-	-	S	ko:K14540	-	ko00000,ko03009	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
GEMNEGCL_01396	2.4e-118	nhaP4	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
GEMNEGCL_01397	7.2e-49	nhaP4	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
GEMNEGCL_01398	3.67e-88	-	-	-	P	-	-	-	NhaP-type Na H and K H
GEMNEGCL_01399	9.85e-49	yozE	-	-	S	-	-	-	Belongs to the UPF0346 family
GEMNEGCL_01400	8.83e-187	degV3	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
GEMNEGCL_01401	1.8e-143	hlyIII	-	-	S	ko:K11068	-	ko00000,ko02042	protein, hemolysin III
GEMNEGCL_01402	5.13e-287	cca	2.7.7.72	-	J	ko:K00974	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
GEMNEGCL_01403	1.15e-205	XK27_10395	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
GEMNEGCL_01404	9.58e-112	-	3.4.21.96	-	S	ko:K01361	-	ko00000,ko01000,ko01002,ko03110	SLAP domain
GEMNEGCL_01405	6.08e-161	yagE	-	-	E	-	-	-	Amino acid permease
GEMNEGCL_01406	8.49e-85	-	-	-	E	-	-	-	amino acid
GEMNEGCL_01407	0.0	treC	3.2.1.93	GH13	G	ko:K01226	ko00500,map00500	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
GEMNEGCL_01408	2.09e-129	treR	-	-	K	ko:K03486	-	ko00000,ko03000	UTRA
GEMNEGCL_01409	0.0	treB	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
GEMNEGCL_01410	2.76e-86	spxA	-	-	K	ko:K16509	-	ko00000	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
GEMNEGCL_01411	1.13e-241	-	-	-	L	ko:K07478	-	ko00000	AAA C-terminal domain
GEMNEGCL_01412	0.0	yqjE	3.4.11.14, 3.4.11.4	-	E	ko:K01258,ko:K01263	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
GEMNEGCL_01413	5.74e-108	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
GEMNEGCL_01414	1.87e-290	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
GEMNEGCL_01415	7.89e-124	-	-	-	S	-	-	-	ECF-type riboflavin transporter, S component
GEMNEGCL_01416	3.1e-127	pdxK	2.7.1.35	-	H	ko:K00868	ko00750,ko01100,map00750,map01100	ko00000,ko00001,ko01000	Phosphomethylpyrimidine kinase
GEMNEGCL_01417	1.59e-259	pbpX1	-	-	V	-	-	-	Beta-lactamase
GEMNEGCL_01418	1.12e-149	maa3	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
GEMNEGCL_01419	1.12e-104	yvbK	-	-	K	-	-	-	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
GEMNEGCL_01420	3.57e-170	-	-	-	L	-	-	-	Phage integrase family
GEMNEGCL_01421	3.94e-85	rpsI	-	-	J	ko:K02996	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS9 family
GEMNEGCL_01422	3.22e-103	rplM	-	-	J	ko:K02871	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
GEMNEGCL_01423	1.06e-185	truA	5.4.99.12	-	J	ko:K06173	-	ko00000,ko01000,ko03016	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
GEMNEGCL_01424	5.12e-174	ecfT	-	-	U	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
GEMNEGCL_01425	5.5e-202	ecfA2	-	-	P	ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
GEMNEGCL_01426	1.02e-198	ecfA1	-	-	P	ko:K16786	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
GEMNEGCL_01427	2.23e-80	rplQ	-	-	J	ko:K02879	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L17
GEMNEGCL_01428	3.62e-218	rpoA	2.7.7.6	-	K	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
GEMNEGCL_01429	3.82e-82	rpsK	-	-	J	ko:K02948	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
GEMNEGCL_01430	3.44e-72	rpsM	-	-	J	ko:K02952	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
GEMNEGCL_01431	1.89e-21	rpmJ	-	-	J	ko:K02919	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL36 family
GEMNEGCL_01432	3.13e-46	infA	-	-	J	ko:K02518	-	ko00000,ko03012	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
GEMNEGCL_01433	3.7e-155	adk	2.7.4.3	-	F	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
GEMNEGCL_01434	1.25e-301	secY	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
GEMNEGCL_01435	4.95e-93	rplO	-	-	J	ko:K02876	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
GEMNEGCL_01436	2.22e-34	rpmD	-	-	J	ko:K02907	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L30
GEMNEGCL_01437	3.73e-110	rpsE	-	-	J	ko:K02988	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
GEMNEGCL_01438	2.8e-72	rplR	-	-	J	ko:K02881	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
GEMNEGCL_01439	7.18e-121	rplF	-	-	J	ko:K02933	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
GEMNEGCL_01440	7.94e-90	rpsH	-	-	J	ko:K02994	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
GEMNEGCL_01441	1e-39	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
GEMNEGCL_01442	1.23e-123	rplE	-	-	J	ko:K02931	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
GEMNEGCL_01443	3.03e-44	rplX	-	-	J	ko:K02895	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
GEMNEGCL_01444	3.62e-79	rplN	-	-	J	ko:K02874	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
GEMNEGCL_01445	1.56e-55	rpsQ	-	-	J	ko:K02961	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
GEMNEGCL_01446	1.45e-34	rpmC	-	-	J	ko:K02904	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uL29 family
GEMNEGCL_01447	1.66e-100	rplP	-	-	J	ko:K02878	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
GEMNEGCL_01448	8.7e-157	rpsC	-	-	J	ko:K02982	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
GEMNEGCL_01449	9.07e-73	rplV	-	-	J	ko:K02890	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
GEMNEGCL_01450	1.14e-62	rpsS	-	-	J	ko:K02965	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
GEMNEGCL_01451	4.01e-198	rplB	-	-	J	ko:K02886	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
GEMNEGCL_01452	1.14e-63	rplW	-	-	J	ko:K02892	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
GEMNEGCL_01453	4.68e-138	rplD	-	-	J	ko:K02926	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the polypeptide exit tunnel
GEMNEGCL_01454	6.64e-146	rplC	-	-	J	ko:K02906	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
GEMNEGCL_01455	4.46e-66	rpsJ	-	-	J	ko:K02946	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Involved in the binding of tRNA to the ribosomes
GEMNEGCL_01456	0.0	fusA	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
GEMNEGCL_01457	1.39e-106	rpsG	-	-	J	ko:K02992	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
GEMNEGCL_01458	1.47e-91	rpsL	-	-	J	ko:K02950	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
GEMNEGCL_01459	7.71e-157	comC	3.4.23.43	-	NOU	ko:K02236	-	ko00000,ko00002,ko01000,ko02044	Bacterial Peptidase A24 N-terminal domain
GEMNEGCL_01460	0.0	rpoC	2.7.7.6	-	K	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
GEMNEGCL_01461	0.0	rpoB	2.7.7.6	-	K	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
GEMNEGCL_01462	0.0	clpC	-	-	O	ko:K03696	ko01100,map01100	ko00000,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
GEMNEGCL_01463	1.92e-106	ytsP	1.8.4.14	-	T	ko:K08968	ko00270,map00270	ko00000,ko00001,ko01000	GAF domain-containing protein
GEMNEGCL_01467	2.84e-108	-	-	-	K	-	-	-	FR47-like protein
GEMNEGCL_01468	6.6e-219	-	-	-	L	-	-	-	Bifunctional protein
GEMNEGCL_01470	1.1e-128	-	-	-	E	ko:K02054	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
GEMNEGCL_01471	6.18e-123	rihC	3.2.2.1	-	F	ko:K01239,ko:K01250,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	Nucleoside
GEMNEGCL_01472	1.07e-93	infC	-	-	J	ko:K02520	-	ko00000,ko03012,ko03029	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
GEMNEGCL_01473	9.64e-38	rpmI	-	-	J	ko:K02916	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL35 family
GEMNEGCL_01474	8.69e-76	rplT	-	-	J	ko:K02887	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
GEMNEGCL_01475	1.52e-193	add	3.5.4.2, 3.5.4.4	-	F	ko:K01488,ko:K02029,ko:K21053	ko00230,ko01100,ko05340,map00230,map01100,map05340	ko00000,ko00001,ko00002,ko01000,ko02000	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
GEMNEGCL_01476	5.81e-253	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
GEMNEGCL_01477	6.85e-109	yqeG	-	-	S	ko:K07015	-	ko00000	HAD phosphatase, family IIIA
GEMNEGCL_01478	5.03e-256	yqeH	-	-	S	ko:K06948	-	ko00000,ko03009	Ribosome biogenesis GTPase YqeH
GEMNEGCL_01479	1.77e-157	nadD	2.7.7.18	-	H	ko:K00969	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
GEMNEGCL_01480	9.22e-141	yqeK	-	-	H	-	-	-	Hydrolase, HD family
GEMNEGCL_01481	5.09e-78	rsfS	-	-	J	ko:K09710	-	ko00000,ko03009	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
GEMNEGCL_01482	8.01e-276	ylbM	-	-	S	-	-	-	Belongs to the UPF0348 family
GEMNEGCL_01483	2.19e-125	ylbN	-	-	S	ko:K07040	-	ko00000	Uncharacterized ACR, COG1399
GEMNEGCL_01484	3.52e-163	csrR	-	-	K	-	-	-	response regulator
GEMNEGCL_01485	0.0	arlS	2.7.13.3	-	T	ko:K18940	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
GEMNEGCL_01486	2.19e-18	-	-	-	-	-	-	-	-
GEMNEGCL_01487	4.28e-125	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
GEMNEGCL_01488	2.95e-283	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_01489	3.23e-108	-	-	-	S	ko:K19055	-	ko00000,ko01000,ko03016	Aminoacyl-tRNA editing domain
GEMNEGCL_01490	2.43e-216	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
GEMNEGCL_01491	1.32e-57	acyP	3.6.1.7	-	C	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	ko00000,ko00001,ko01000	Belongs to the acylphosphatase family
GEMNEGCL_01492	1.37e-173	spoU	-	-	J	ko:K03437	-	ko00000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GEMNEGCL_01493	3.71e-76	yodB	-	-	K	-	-	-	Transcriptional regulator, HxlR family
GEMNEGCL_01495	5.18e-139	glnP9	-	-	P	ko:K02029	-	ko00000,ko00002,ko02000	ABC transporter, permease protein
GEMNEGCL_01496	1.68e-149	glnP7	-	-	P	ko:K02029	-	ko00000,ko00002,ko02000	ABC transporter permease
GEMNEGCL_01497	4.57e-163	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_01498	3.72e-202	cjaA	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_01499	2.9e-254	pheS	6.1.1.20	-	J	ko:K01889	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
GEMNEGCL_01500	0.0	pheT	6.1.1.20	-	J	ko:K01890	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
GEMNEGCL_01501	2.55e-94	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
GEMNEGCL_01502	6.74e-214	ldh3	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	lactate/malate dehydrogenase, alpha/beta C-terminal domain
GEMNEGCL_01503	2.91e-181	metQ	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
GEMNEGCL_01504	1.8e-34	-	-	-	-	-	-	-	-
GEMNEGCL_01505	0.0	sufI	-	-	Q	-	-	-	Multicopper oxidase
GEMNEGCL_01506	1.76e-193	-	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
GEMNEGCL_01507	0.0	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter
GEMNEGCL_01508	8.29e-294	-	-	-	Q	-	-	-	Imidazolonepropionase and related amidohydrolases
GEMNEGCL_01509	2.48e-313	-	-	-	S	ko:K12941	-	ko00000,ko01002	Peptidase dimerisation domain
GEMNEGCL_01510	1.3e-175	-	-	-	S	-	-	-	Protein of unknown function (DUF3100)
GEMNEGCL_01511	2.04e-60	-	-	-	S	-	-	-	An automated process has identified a potential problem with this gene model
GEMNEGCL_01512	6.91e-67	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
GEMNEGCL_01513	1.29e-164	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_01514	3.66e-43	-	-	-	-	-	-	-	-
GEMNEGCL_01515	7.51e-145	-	-	-	K	-	-	-	WHG domain
GEMNEGCL_01516	3.41e-125	azo1	1.5.1.36, 1.7.1.6	-	S	ko:K03206,ko:K19784,ko:K22393	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	NADPH-dependent FMN reductase
GEMNEGCL_01517	2.58e-126	azr	1.5.1.36	-	S	ko:K22394	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	NADPH-dependent FMN reductase
GEMNEGCL_01518	9.48e-194	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
GEMNEGCL_01519	5.24e-230	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
GEMNEGCL_01521	2.99e-75	cvpA	-	-	S	-	-	-	Colicin V production protein
GEMNEGCL_01522	3.66e-166	rsmG	2.1.1.170	-	J	ko:K03501	-	ko00000,ko01000,ko03009,ko03036	Specifically methylates the N7 position of a guanine in 16S rRNA
GEMNEGCL_01523	5.86e-191	noc	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
GEMNEGCL_01524	4.99e-178	soj	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	Sporulation initiation inhibitor
GEMNEGCL_01525	4.28e-197	spo0J	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
GEMNEGCL_01526	4.49e-59	yyzM	-	-	S	-	-	-	Bacterial protein of unknown function (DUF951)
GEMNEGCL_01527	6.88e-257	ychF	-	-	J	ko:K06942	-	ko00000,ko03009	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
GEMNEGCL_01528	3.93e-176	-	-	-	S	-	-	-	Protein of unknown function (DUF1129)
GEMNEGCL_01529	1.22e-190	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_01530	1.68e-179	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_01531	0.0	ndvA	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
GEMNEGCL_01532	8.32e-157	vanR	-	-	K	-	-	-	response regulator
GEMNEGCL_01533	2.18e-269	-	-	-	T	-	-	-	His Kinase A (phosphoacceptor) domain
GEMNEGCL_01534	0.0	murE	6.3.2.13, 6.3.2.7	-	M	ko:K01928,ko:K05362	ko00300,ko00550,ko01100,map00300,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
GEMNEGCL_01535	7.79e-186	racD	5.1.1.13	-	M	ko:K01779	ko00250,ko01054,map00250,map01054	ko00000,ko00001,ko01000	Belongs to the aspartate glutamate racemases family
GEMNEGCL_01536	6.94e-70	-	-	-	S	-	-	-	Enterocin A Immunity
GEMNEGCL_01537	1.95e-45	-	-	-	-	-	-	-	-
GEMNEGCL_01538	1.07e-35	-	-	-	-	-	-	-	-
GEMNEGCL_01539	4.48e-34	-	-	-	-	-	-	-	-
GEMNEGCL_01540	1.72e-127	-	-	-	M	-	-	-	Protein of unknown function (DUF3737)
GEMNEGCL_01541	1.72e-288	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase, class I
GEMNEGCL_01542	1.93e-242	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase
GEMNEGCL_01543	9.01e-90	-	-	-	S	-	-	-	SdpI/YhfL protein family
GEMNEGCL_01544	4.96e-167	-	-	-	K	-	-	-	Transcriptional regulatory protein, C terminal
GEMNEGCL_01545	0.0	yclK	-	-	T	-	-	-	Histidine kinase
GEMNEGCL_01546	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
GEMNEGCL_01547	5.3e-137	vanZ	-	-	V	-	-	-	VanZ like family
GEMNEGCL_01548	0.0	pgi	5.3.1.9	-	G	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the GPI family
GEMNEGCL_01549	1.33e-273	-	-	-	EGP	-	-	-	Major Facilitator
GEMNEGCL_01550	7.95e-250	ampC	-	-	V	-	-	-	Beta-lactamase
GEMNEGCL_01553	0.0	murE2	6.3.2.13	-	M	ko:K01928	ko00300,ko00550,map00300,map00550	ko00000,ko00001,ko01000,ko01011	Domain of unknown function (DUF1727)
GEMNEGCL_01554	7.02e-146	tdk	2.7.1.21	-	F	ko:K00857	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	thymidine kinase
GEMNEGCL_01555	6.6e-237	prfA	-	-	J	ko:K02835	-	ko00000,ko03012	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
GEMNEGCL_01556	1.24e-198	prmC	2.1.1.297	-	J	ko:K02493	-	ko00000,ko01000,ko03012	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
GEMNEGCL_01557	1.66e-243	ywlC	2.7.7.87	-	J	ko:K07566	-	ko00000,ko01000,ko03009,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
GEMNEGCL_01558	5.28e-146	upp	2.4.2.9	-	F	ko:K00761	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
GEMNEGCL_01559	5.87e-166	atpB	-	-	C	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko03110	it plays a direct role in the translocation of protons across the membrane
GEMNEGCL_01560	4.83e-37	atpE	-	-	C	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
GEMNEGCL_01561	2.48e-83	atpF	-	-	C	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
GEMNEGCL_01562	5.38e-119	atpH	-	-	C	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
GEMNEGCL_01563	0.0	atpA	3.6.3.14	-	C	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
GEMNEGCL_01564	1.48e-221	atpG	-	-	C	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
GEMNEGCL_01565	0.0	atpD	3.6.3.14	-	C	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
GEMNEGCL_01566	2.45e-93	atpC	-	-	C	ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane
GEMNEGCL_01567	2.54e-42	-	-	-	S	-	-	-	Protein of unknown function (DUF1146)
GEMNEGCL_01568	4.81e-227	mbl	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	Cell shape determining protein MreB Mrl
GEMNEGCL_01569	1.59e-68	ytjA	-	-	S	ko:K08998	-	ko00000	Could be involved in insertion of integral membrane proteins into the membrane
GEMNEGCL_01570	5.13e-46	-	-	-	S	-	-	-	Protein of unknown function (DUF2969)
GEMNEGCL_01571	1.18e-275	rodA	-	-	D	ko:K05837	-	ko00000,ko03036	Belongs to the SEDS family
GEMNEGCL_01572	9.45e-104	uspA	-	-	T	-	-	-	universal stress protein
GEMNEGCL_01573	1.35e-56	-	-	-	-	-	-	-	-
GEMNEGCL_01574	1.47e-302	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
GEMNEGCL_01575	8.08e-110	-	-	-	S	-	-	-	Protein of unknown function (DUF1694)
GEMNEGCL_01576	3.07e-142	rpsD	-	-	J	ko:K02986	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
GEMNEGCL_01577	0.0	ezrA	-	-	D	ko:K06286	-	ko00000,ko03036	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
GEMNEGCL_01578	1.13e-272	iscS2	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
GEMNEGCL_01579	2.86e-287	thiI	2.8.1.4	-	H	ko:K03151	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GEMNEGCL_01580	2.1e-232	-	3.6.4.12	-	K	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Putative ATP-dependent DNA helicase recG C-terminal
GEMNEGCL_01581	6.01e-153	rsuA	5.4.99.19	-	J	ko:K06183	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
GEMNEGCL_01582	3.97e-57	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
GEMNEGCL_01583	1.06e-86	-	-	-	S	-	-	-	GtrA-like protein
GEMNEGCL_01584	1.73e-219	yfdH	-	GT2	M	ko:K12999	-	ko00000,ko01000,ko01003,ko01005	Glycosyltransferase, group 2 family protein
GEMNEGCL_01585	3.33e-123	-	-	-	S	-	-	-	Protein of unknown function (DUF3990)
GEMNEGCL_01586	2.09e-59	-	-	-	-	-	-	-	-
GEMNEGCL_01587	9.25e-13	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
GEMNEGCL_01588	0.0	yoaB	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
GEMNEGCL_01589	1.73e-165	-	-	-	S	ko:K06926	-	ko00000	AAA domain, putative AbiEii toxin, Type IV TA system
GEMNEGCL_01590	2.91e-67	-	-	-	-	-	-	-	-
GEMNEGCL_01591	0.0	valS	6.1.1.9	-	J	ko:K01873	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
GEMNEGCL_01592	1.22e-306	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
GEMNEGCL_01593	1.06e-162	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
GEMNEGCL_01594	6.18e-150	radC	-	-	L	ko:K03630	-	ko00000	DNA repair protein
GEMNEGCL_01595	8.26e-226	mreB	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	cell shape determining protein MreB
GEMNEGCL_01596	8.27e-189	mreC	-	-	M	ko:K03570	-	ko00000,ko03036	Involved in formation and maintenance of cell shape
GEMNEGCL_01597	5.43e-122	mreD	-	-	-	ko:K03571	-	ko00000,ko03036	-
GEMNEGCL_01598	1.4e-09	-	-	-	S	-	-	-	Protein of unknown function (DUF4044)
GEMNEGCL_01599	1.02e-72	-	-	-	S	-	-	-	Protein of unknown function (DUF3397)
GEMNEGCL_01600	5.63e-102	mraZ	-	-	K	ko:K03925	-	ko00000	Belongs to the MraZ family
GEMNEGCL_01601	1.49e-223	rsmH	2.1.1.199	-	J	ko:K03438	-	ko00000,ko01000,ko03009	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
GEMNEGCL_01602	6.55e-72	ftsL	-	-	D	-	-	-	Cell division protein FtsL
GEMNEGCL_01603	0.0	pbpX	-	-	M	ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
GEMNEGCL_01604	4.43e-224	mraY	2.7.8.13	-	M	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
GEMNEGCL_01605	0.0	murD	6.3.2.9	-	M	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
GEMNEGCL_01606	1.65e-265	murG	2.4.1.227	GT28	M	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
GEMNEGCL_01607	3.14e-194	divIB	-	-	D	ko:K03589	ko04112,map04112	ko00000,ko00001,ko03036	Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
GEMNEGCL_01608	1.91e-314	ftsA	-	-	D	ko:K03590	ko04112,map04112	ko00000,ko00001,ko03036,ko04812	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
GEMNEGCL_01609	2.52e-300	ftsZ	-	-	D	ko:K03531	ko04112,map04112	ko00000,ko00001,ko02048,ko03036,ko04812	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
GEMNEGCL_01610	1.43e-96	sepF	-	-	D	ko:K09772	-	ko00000,ko03036	Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
GEMNEGCL_01611	2.42e-60	yggT	-	-	S	ko:K02221	-	ko00000,ko02044	YGGT family
GEMNEGCL_01612	1.9e-190	ylmH	-	-	S	-	-	-	S4 domain protein
GEMNEGCL_01613	6.3e-138	divIVA	-	-	D	ko:K04074	-	ko00000,ko03036	DivIVA domain protein
GEMNEGCL_01614	0.0	ileS	6.1.1.5	-	J	ko:K01870	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
GEMNEGCL_01615	2.32e-43	cspA	-	-	K	ko:K03704	-	ko00000,ko03000	'Cold-shock' DNA-binding domain
GEMNEGCL_01616	4.26e-133	nudF	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	ADP-ribose pyrophosphatase
GEMNEGCL_01617	7.05e-55	-	-	-	-	-	-	-	-
GEMNEGCL_01618	2.05e-163	mtnN	3.2.2.9	-	E	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
GEMNEGCL_01619	1.62e-276	iscS	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
GEMNEGCL_01620	9.98e-75	XK27_04120	-	-	S	-	-	-	Putative amino acid metabolism
GEMNEGCL_01621	4.47e-278	mnmA	2.8.1.13	-	J	ko:K00566	ko04122,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
GEMNEGCL_01622	4.7e-163	pgm	-	-	G	-	-	-	Phosphoglycerate mutase family
GEMNEGCL_01623	2.31e-148	-	-	-	S	-	-	-	repeat protein
GEMNEGCL_01624	0.0	recD2	3.1.11.5	-	L	ko:K03581	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
GEMNEGCL_01625	0.0	-	-	-	L	-	-	-	Nuclease-related domain
GEMNEGCL_01626	3.07e-235	ytlR	-	-	I	-	-	-	Diacylglycerol kinase catalytic domain
GEMNEGCL_01627	0.0	rnjA	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
GEMNEGCL_01628	5.22e-45	ykzG	-	-	S	-	-	-	Belongs to the UPF0356 family
GEMNEGCL_01629	9.67e-104	-	-	-	-	-	-	-	-
GEMNEGCL_01630	6.74e-309	cpdA	-	-	S	-	-	-	Calcineurin-like phosphoesterase
GEMNEGCL_01631	5.87e-278	ypsC	-	-	L	ko:K07444	-	ko00000,ko01000	Belongs to the methyltransferase superfamily
GEMNEGCL_01632	1.85e-90	gpsB	-	-	D	-	-	-	Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
GEMNEGCL_01633	1.18e-139	ypsA	-	-	S	-	-	-	Belongs to the UPF0398 family
GEMNEGCL_01634	8.47e-152	recU	-	-	L	ko:K03700	-	ko00000,ko03400	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
GEMNEGCL_01635	0.0	ponA	2.4.1.129, 3.4.16.4	GT51	M	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein 1A
GEMNEGCL_01636	2.24e-147	nth	4.2.99.18	-	L	ko:K10773	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
GEMNEGCL_01637	6.91e-149	dnaD	-	-	L	ko:K02086	-	ko00000	DnaD domain protein
GEMNEGCL_01638	0.0	asnS	6.1.1.22	-	J	ko:K01893	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Asparaginyl-tRNA synthetase
GEMNEGCL_01639	9.62e-116	ypmB	-	-	S	-	-	-	Protein conserved in bacteria
GEMNEGCL_01640	0.0	dinG	3.6.4.12	-	L	ko:K03722	-	ko00000,ko01000,ko03400	helicase involved in DNA repair and perhaps also replication
GEMNEGCL_01641	0.0	addA	3.6.4.12	-	L	ko:K16898	-	ko00000,ko01000,ko03400	ATP-dependent helicase nuclease subunit A
GEMNEGCL_01642	0.0	rexB	3.6.4.12	-	L	ko:K16899	-	ko00000,ko01000,ko03400	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
GEMNEGCL_01643	2.12e-173	mvk	2.7.1.36	-	I	ko:K00869	ko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146	ko00000,ko00001,ko00002,ko01000	GHMP kinases N terminal domain
GEMNEGCL_01644	5.87e-228	mvaD	4.1.1.33	-	I	ko:K01597	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	diphosphomevalonate decarboxylase
GEMNEGCL_01645	6.67e-261	mvaK2	2.7.4.2	-	I	ko:K00938	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	phosphomevalonate kinase
GEMNEGCL_01646	4.87e-236	fni	5.3.3.2	-	C	ko:K01823	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
GEMNEGCL_01647	1.28e-150	-	3.1.3.102, 3.1.3.104, 3.1.3.23	-	G	ko:K07757,ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Sucrose-6F-phosphate phosphohydrolase
GEMNEGCL_01648	0.0	rsmF	-	-	J	-	-	-	NOL1 NOP2 sun family protein
GEMNEGCL_01649	4.4e-215	-	-	-	-	-	-	-	-
GEMNEGCL_01650	4.01e-184	-	-	-	-	-	-	-	-
GEMNEGCL_01651	1.27e-133	lepB	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
GEMNEGCL_01652	3.49e-36	-	-	-	-	-	-	-	-
GEMNEGCL_01653	3.85e-193	-	-	-	-	-	-	-	-
GEMNEGCL_01654	9.63e-50	-	-	-	-	-	-	-	-
GEMNEGCL_01655	5.91e-113	-	-	-	-	-	-	-	-
GEMNEGCL_01656	1.65e-180	-	-	-	-	-	-	-	-
GEMNEGCL_01657	5.4e-161	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
GEMNEGCL_01658	1.25e-80	lexA	-	-	K	ko:K07979	-	ko00000,ko03000	Transcriptional regulator, GntR family
GEMNEGCL_01659	2.86e-307	pepT	3.4.11.4	-	E	ko:K01258	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
GEMNEGCL_01660	8.12e-196	yqfO	-	-	S	-	-	-	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
GEMNEGCL_01661	2.8e-159	trmK	2.1.1.217	-	S	ko:K06967	-	ko00000,ko01000,ko03016	SAM-dependent methyltransferase
GEMNEGCL_01662	5.37e-106	-	3.6.1.55	-	F	ko:K03574	-	ko00000,ko01000,ko03400	NUDIX domain
GEMNEGCL_01663	4.34e-166	-	-	-	S	-	-	-	Peptidase family M23
GEMNEGCL_01664	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_01665	3.39e-88	-	-	-	S	ko:K06915	-	ko00000	cog cog0433
GEMNEGCL_01666	9.86e-146	-	-	-	F	ko:K15051	-	ko00000	DNA/RNA non-specific endonuclease
GEMNEGCL_01667	8.81e-40	-	-	-	M	-	-	-	Mycoplasma protein of unknown function, DUF285
GEMNEGCL_01669	1.61e-70	-	-	-	-	-	-	-	-
GEMNEGCL_01670	0.0	fhs	6.3.4.3	-	F	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the formate--tetrahydrofolate ligase family
GEMNEGCL_01671	9.07e-102	lspA	3.4.23.36	-	MU	ko:K03101	ko03060,map03060	ko00000,ko00001,ko01000,ko01002	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
GEMNEGCL_01672	2.28e-221	rluD	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
GEMNEGCL_01673	4.13e-255	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
GEMNEGCL_01674	0.0	carB1	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
GEMNEGCL_01675	0.0	FbpA	-	-	K	-	-	-	Fibronectin-binding protein
GEMNEGCL_01676	2.06e-88	-	-	-	-	-	-	-	-
GEMNEGCL_01677	2.23e-202	-	-	-	S	-	-	-	EDD domain protein, DegV family
GEMNEGCL_01678	5.59e-98	-	-	-	-	-	-	-	-
GEMNEGCL_01679	0.0	thrS	6.1.1.3	-	J	ko:K01868	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
GEMNEGCL_01680	1.31e-215	dnaI	-	-	L	ko:K11144	-	ko00000,ko03032	Primosomal protein DnaI
GEMNEGCL_01681	0.0	dnaB2	-	-	L	ko:K03346	-	ko00000,ko03032	Replication initiation and membrane attachment
GEMNEGCL_01682	3.04e-105	nrdR	-	-	K	ko:K07738	-	ko00000,ko03000	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
GEMNEGCL_01683	2.16e-136	coaE	2.7.1.24	-	F	ko:K00859	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
GEMNEGCL_01684	2.24e-198	fpg	3.2.2.23, 4.2.99.18	-	L	ko:K10563	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
GEMNEGCL_01685	0.0	polA	2.7.7.7	-	L	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	ko00000,ko00001,ko01000,ko03032,ko03400	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
GEMNEGCL_01686	1.05e-40	-	-	-	-	-	-	-	-
GEMNEGCL_01687	1.72e-23	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_01688	0.0	gabD	1.2.1.16, 1.2.1.20, 1.2.1.79	-	C	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Belongs to the aldehyde dehydrogenase family
GEMNEGCL_01689	5.36e-289	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
GEMNEGCL_01690	4.76e-140	-	-	-	-	-	-	-	-
GEMNEGCL_01691	0.0	ydgH	-	-	S	ko:K06994	-	ko00000	MMPL family
GEMNEGCL_01692	1.53e-127	yobS	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
GEMNEGCL_01693	1.33e-205	-	3.5.2.6	-	V	ko:K17836	ko00311,ko01130,ko01501,map00311,map01130,map01501	ko00000,ko00001,ko00002,ko01000,ko01504	Beta-lactamase enzyme family
GEMNEGCL_01694	1.4e-207	corA	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
GEMNEGCL_01695	6.07e-310	-	-	-	G	ko:K02027	-	ko00000,ko00002,ko02000	Bacterial extracellular solute-binding protein
GEMNEGCL_01696	0.0	-	-	-	S	-	-	-	Zn-dependent metallo-hydrolase RNA specificity domain
GEMNEGCL_01697	5.62e-187	-	-	-	P	ko:K02026	-	ko00000,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
GEMNEGCL_01698	4.69e-202	-	-	-	P	ko:K02025	-	ko00000,ko00002,ko02000	ABC-type sugar transport systems, permease components
GEMNEGCL_01699	8.72e-258	malK	-	-	P	ko:K10112,ko:K17240	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ATPases associated with a variety of cellular activities
GEMNEGCL_01700	0.0	pepD1	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
GEMNEGCL_01701	7.24e-204	endA	-	-	F	ko:K15051	-	ko00000	DNA RNA non-specific endonuclease
GEMNEGCL_01702	1.83e-230	-	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	EXOIII
GEMNEGCL_01703	3.45e-201	-	-	-	K	-	-	-	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
GEMNEGCL_01704	2.23e-150	yviA	-	-	S	-	-	-	Protein of unknown function (DUF421)
GEMNEGCL_01705	2.94e-74	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
GEMNEGCL_01706	3.6e-106	-	-	-	C	-	-	-	Flavodoxin
GEMNEGCL_01707	0.0	uvrA2	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	excinuclease ABC, A subunit
GEMNEGCL_01708	2.25e-241	mmuM	2.1.1.10	-	H	ko:K00547	ko00270,ko01100,ko01110,map00270,map01100,map01110	ko00000,ko00001,ko01000	homocysteine S-methyltransferase
GEMNEGCL_01709	5.94e-148	-	-	-	I	-	-	-	Acid phosphatase homologues
GEMNEGCL_01710	2.91e-103	-	-	-	S	-	-	-	Phage portal protein
GEMNEGCL_01711	2.67e-95	-	3.4.21.92	-	OU	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S14 family
GEMNEGCL_01712	7.4e-57	-	-	-	S	-	-	-	Phage capsid family
GEMNEGCL_01713	1.2e-23	-	-	-	S	-	-	-	Phage gp6-like head-tail connector protein
GEMNEGCL_01715	1.42e-23	-	-	-	S	-	-	-	Bacteriophage HK97-gp10, putative tail-component
GEMNEGCL_01720	9.77e-175	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
GEMNEGCL_01721	3.54e-36	-	-	-	S	-	-	-	phage tail
GEMNEGCL_01722	2.37e-194	-	-	-	S	-	-	-	Phage minor structural protein
GEMNEGCL_01729	7.99e-87	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
GEMNEGCL_01730	3.01e-137	msrA	1.8.4.11, 1.8.4.12	-	O	ko:K07304,ko:K12267	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GEMNEGCL_01731	1.71e-150	-	-	-	S	-	-	-	Peptidase family M23
GEMNEGCL_01732	1.34e-34	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_01733	2.01e-32	-	-	-	G	-	-	-	Peptidase_C39 like family
GEMNEGCL_01734	2.16e-207	-	-	-	M	-	-	-	NlpC/P60 family
GEMNEGCL_01735	6.67e-115	-	-	-	G	-	-	-	Peptidase_C39 like family
GEMNEGCL_01736	1.09e-223	pepI	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
GEMNEGCL_01737	2.05e-115	-	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Cobalt transport protein
GEMNEGCL_01738	0.0	-	-	-	S	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_01741	4.06e-132	-	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
GEMNEGCL_01742	8.32e-171	-	-	-	-	-	-	-	-
GEMNEGCL_01743	3.18e-126	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
GEMNEGCL_01744	7.4e-188	ykuT	-	-	M	ko:K16052,ko:K22044	-	ko00000,ko02000	mechanosensitive ion channel
GEMNEGCL_01745	2.96e-23	ytxG	-	-	S	-	-	-	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
GEMNEGCL_01746	3.09e-71	-	-	-	-	-	-	-	-
GEMNEGCL_01747	5.62e-95	yslB	-	-	S	-	-	-	Protein of unknown function (DUF2507)
GEMNEGCL_01748	2.91e-186	murI	3.6.1.66, 5.1.1.3	-	M	ko:K01776,ko:K02428	ko00230,ko00471,ko01100,map00230,map00471,map01100	ko00000,ko00001,ko01000,ko01011	Provides the (R)-glutamate required for cell wall biosynthesis
GEMNEGCL_01749	8.12e-144	rdgB	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
GEMNEGCL_01750	1.06e-38	-	-	-	-	-	-	-	-
GEMNEGCL_01752	1.02e-19	-	-	-	S	-	-	-	Phage portal protein
GEMNEGCL_01754	8.56e-221	-	-	-	S	-	-	-	Phage Terminase
GEMNEGCL_01755	1.84e-38	-	-	-	S	-	-	-	Phage Terminase
GEMNEGCL_01758	9.87e-71	-	-	-	L	-	-	-	Phage terminase, small subunit
GEMNEGCL_01759	3.73e-80	-	-	-	L	-	-	-	HNH nucleases
GEMNEGCL_01760	2.55e-09	-	-	-	-	-	-	-	-
GEMNEGCL_01766	1.21e-106	-	-	-	K	ko:K07741	-	ko00000	AntA/AntB antirepressor
GEMNEGCL_01772	9.66e-13	-	-	-	-	-	-	-	-
GEMNEGCL_01775	5.65e-23	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
GEMNEGCL_01783	2.86e-15	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_01784	5.53e-95	-	-	-	K	-	-	-	Peptidase S24-like
GEMNEGCL_01785	1.25e-24	-	-	-	S	-	-	-	Hypothetical protein (DUF2513)
GEMNEGCL_01788	8.96e-231	-	-	-	V	-	-	-	Abi-like protein
GEMNEGCL_01789	4.87e-154	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
GEMNEGCL_01790	2.48e-12	msrA	1.8.4.11, 1.8.4.12	-	O	ko:K07304,ko:K12267	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GEMNEGCL_01792	2.83e-205	yitT	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
GEMNEGCL_01793	1.34e-151	-	-	-	-	-	-	-	-
GEMNEGCL_01794	3.06e-202	thrB	2.7.1.39	-	F	ko:K00872	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
GEMNEGCL_01795	2.95e-283	hom	1.1.1.3	-	E	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	homoserine dehydrogenase
GEMNEGCL_01796	0.0	thrC	4.2.3.1	-	E	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Threonine synthase
GEMNEGCL_01797	0.0	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
GEMNEGCL_01798	6.83e-133	yrgI	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Histidine phosphatase superfamily (branch 1)
GEMNEGCL_01799	0.0	-	-	-	L	-	-	-	PLD-like domain
GEMNEGCL_01800	5.97e-55	-	-	-	S	-	-	-	SnoaL-like domain
GEMNEGCL_01801	6.13e-70	-	-	-	K	-	-	-	sequence-specific DNA binding
GEMNEGCL_01802	8.71e-31	-	-	-	G	-	-	-	Ribose/Galactose Isomerase
GEMNEGCL_01803	5.51e-35	-	-	-	-	-	-	-	-
GEMNEGCL_01804	8.1e-87	-	-	-	S	-	-	-	Domain of unknown function DUF1828
GEMNEGCL_01805	7.91e-14	-	-	-	-	-	-	-	-
GEMNEGCL_01806	2.93e-67	-	-	-	-	-	-	-	-
GEMNEGCL_01807	1.05e-226	citR	-	-	K	-	-	-	Putative sugar-binding domain
GEMNEGCL_01808	0.0	-	-	-	S	-	-	-	Putative threonine/serine exporter
GEMNEGCL_01810	1.13e-45	-	-	-	-	-	-	-	-
GEMNEGCL_01811	7.7e-21	-	-	-	-	-	-	-	-
GEMNEGCL_01812	1.85e-115	ybaK	-	-	S	ko:K03976	-	ko00000,ko01000,ko03016	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
GEMNEGCL_01813	1.38e-223	prmA	-	-	J	ko:K02687	-	ko00000,ko01000,ko03009	Ribosomal protein L11 methyltransferase
GEMNEGCL_01814	6.77e-49	-	-	-	-	-	-	-	-
GEMNEGCL_01815	0.0	relA	2.7.6.5	-	KT	ko:K00951	ko00230,map00230	ko00000,ko00001,ko01000	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GEMNEGCL_01816	1.8e-99	dtd	-	-	J	ko:K07560	-	ko00000,ko01000,ko03016	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
GEMNEGCL_01817	2.03e-310	hisS	6.1.1.21	-	J	ko:K01892	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	histidyl-tRNA synthetase
GEMNEGCL_01818	0.0	aspS	6.1.1.12	-	J	ko:K01876	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
GEMNEGCL_01819	9.14e-283	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
GEMNEGCL_01821	3.82e-276	coaBC	4.1.1.36, 6.3.2.5	-	H	ko:K01598,ko:K13038	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
GEMNEGCL_01822	1.19e-43	-	-	-	S	-	-	-	reductase
GEMNEGCL_01823	2.98e-50	-	-	-	S	-	-	-	reductase
GEMNEGCL_01824	6.32e-41	-	-	-	S	-	-	-	reductase
GEMNEGCL_01825	2.13e-189	yxeH	-	-	S	-	-	-	hydrolase
GEMNEGCL_01826	1.14e-230	gyaR	1.1.1.26, 1.1.1.399, 1.1.1.95	-	CH	ko:K00015,ko:K00058	ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
GEMNEGCL_01827	0.0	yhdG	-	-	E	ko:K03294	-	ko00000	Amino Acid
GEMNEGCL_01828	1.58e-140	yngC	-	-	S	-	-	-	SNARE associated Golgi protein
GEMNEGCL_01829	0.0	uvrC	-	-	L	ko:K03703	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
GEMNEGCL_01830	1.88e-309	obg	-	-	S	ko:K03979	-	ko00000,ko01000,ko03009	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
GEMNEGCL_01831	0.0	oatA	-	-	I	-	-	-	Acyltransferase
GEMNEGCL_01832	6.82e-223	rnz	3.1.26.11	-	J	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
GEMNEGCL_01833	6.84e-183	-	-	-	S	ko:K07124	-	ko00000	Belongs to the short-chain dehydrogenases reductases (SDR) family
GEMNEGCL_01834	3.57e-47	-	-	-	S	-	-	-	Lipopolysaccharide assembly protein A domain
GEMNEGCL_01835	5.14e-38	rpmF	-	-	J	ko:K02911	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bL32 family
GEMNEGCL_01836	2.22e-166	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
GEMNEGCL_01839	1.29e-32	-	-	-	S	-	-	-	Hypothetical protein (DUF2513)
GEMNEGCL_01841	1.8e-20	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
GEMNEGCL_01844	1.7e-23	-	-	-	-	-	-	-	-
GEMNEGCL_01845	6.73e-97	-	-	-	K	ko:K07741	-	ko00000	AntA/AntB antirepressor
GEMNEGCL_01852	2.83e-90	-	-	-	S	-	-	-	AAA domain
GEMNEGCL_01854	9.75e-189	-	-	-	L	-	-	-	Helicase C-terminal domain protein
GEMNEGCL_01857	0.0	-	-	-	S	ko:K06919	-	ko00000	Phage plasmid primase, P4
GEMNEGCL_01869	2.71e-49	-	-	-	S	-	-	-	VRR_NUC
GEMNEGCL_01872	3.2e-61	-	-	-	S	-	-	-	HNH endonuclease
GEMNEGCL_01873	1.71e-72	-	-	-	S	-	-	-	Phage terminase, small subunit
GEMNEGCL_01875	1.06e-264	-	-	-	S	-	-	-	Phage Terminase
GEMNEGCL_01877	5.08e-161	-	-	-	S	-	-	-	Phage portal protein
GEMNEGCL_01878	7.51e-51	-	3.4.21.92	-	OU	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S14 family
GEMNEGCL_01879	4.16e-150	-	-	-	S	-	-	-	peptidase activity
GEMNEGCL_01887	2e-202	-	-	-	D	-	-	-	domain protein
GEMNEGCL_01889	1.49e-162	-	-	-	S	-	-	-	Phage minor structural protein
GEMNEGCL_01898	5.77e-39	-	-	-	S	-	-	-	Bacteriophage holin of superfamily 6 (Holin_LLH)
GEMNEGCL_01899	5.45e-106	-	-	-	S	-	-	-	N-acetylmuramoyl-L-alanine amidase activity
GEMNEGCL_01901	9.67e-15	-	-	-	-	-	-	-	-
GEMNEGCL_01902	0.0	yfkN	3.1.3.6, 3.1.4.16	-	F	ko:K01119	ko00230,ko00240,map00230,map00240	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
GEMNEGCL_01903	1.25e-38	-	-	-	S	-	-	-	Protein of unknown function (DUF2929)
GEMNEGCL_01904	0.0	dnaE	2.7.7.7	-	L	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase
GEMNEGCL_01905	5.46e-233	pfkA	2.7.1.11	-	F	ko:K00850	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230	ko00000,ko00001,ko00002,ko01000,ko01009,ko03019	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
GEMNEGCL_01906	0.0	pyk	2.7.1.40	-	G	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the pyruvate kinase family
GEMNEGCL_01907	1.21e-213	yitL	-	-	S	ko:K00243	-	ko00000	S1 domain
GEMNEGCL_01908	6.74e-213	xerD	-	-	D	ko:K04763	-	ko00000,ko03036	recombinase XerD
GEMNEGCL_01909	3.25e-81	ribT	-	-	K	ko:K02859	-	ko00000	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
GEMNEGCL_01910	1.81e-169	scpA	-	-	D	ko:K05896	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
GEMNEGCL_01911	7.57e-135	scpB	-	-	D	ko:K06024	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
GEMNEGCL_01912	4.65e-168	rluB	5.4.99.22	-	J	ko:K06178	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
GEMNEGCL_01913	8.49e-146	ribU	-	-	U	-	-	-	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
GEMNEGCL_01914	1.13e-41	-	-	-	M	-	-	-	Lysin motif
GEMNEGCL_01915	5.6e-148	cmk	2.7.4.25	-	F	ko:K00945	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the cytidylate kinase family. Type 1 subfamily
GEMNEGCL_01916	1.4e-281	rpsA	-	-	J	ko:K02945	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein S1
GEMNEGCL_01917	1.34e-314	der	-	-	S	ko:K03977	-	ko00000,ko03009	GTPase that plays an essential role in the late steps of ribosome biogenesis
GEMNEGCL_01918	8.21e-57	hup	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
GEMNEGCL_01919	7.11e-293	XK27_05225	-	-	S	-	-	-	Tetratricopeptide repeat protein
GEMNEGCL_01920	2e-299	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GEMNEGCL_01921	8.88e-178	-	-	-	P	-	-	-	Voltage gated chloride channel
GEMNEGCL_01922	3.44e-238	-	-	-	C	-	-	-	FMN-dependent dehydrogenase
GEMNEGCL_01923	8.68e-69	-	-	-	-	-	-	-	-
GEMNEGCL_01924	1.17e-56	-	-	-	-	-	-	-	-
GEMNEGCL_01925	1.33e-295	glyA	2.1.2.1	-	E	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
GEMNEGCL_01926	0.0	-	-	-	E	-	-	-	amino acid
GEMNEGCL_01927	1.64e-200	yhaX	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
GEMNEGCL_01928	0.0	dexB	3.2.1.70	-	G	ko:K01215	-	ko00000,ko01000	Alpha amylase, catalytic domain protein
GEMNEGCL_01929	1.07e-52	rpmE	-	-	J	ko:K02909	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L31
GEMNEGCL_01930	0.0	murF	6.3.2.10	-	M	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
GEMNEGCL_01931	0.0	cshA	3.6.4.13	-	F	ko:K05592	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
GEMNEGCL_01932	9.39e-80	acpS	2.7.8.7	-	I	ko:K00997	ko00770,map00770	ko00000,ko00001,ko01000	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
GEMNEGCL_01933	1.55e-274	alr	5.1.1.1, 5.1.1.5	-	E	ko:K01775,ko:K20707	ko00473,ko01100,ko01502,map00473,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
GEMNEGCL_01934	1.23e-166	-	-	-	S	-	-	-	(CBS) domain
GEMNEGCL_01935	2.93e-234	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
GEMNEGCL_01936	1.89e-134	pth	3.1.1.29	-	J	ko:K01056	-	ko00000,ko01000,ko03012	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
GEMNEGCL_01937	0.0	mfd	-	-	L	ko:K03723	ko03420,map03420	ko00000,ko00001,ko01000,ko03400	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
GEMNEGCL_01938	7.32e-46	yabO	-	-	J	-	-	-	S4 domain protein
GEMNEGCL_01939	7.52e-78	divIC	-	-	D	ko:K13052	-	ko00000,ko03036	Septum formation initiator
GEMNEGCL_01940	1.61e-81	-	-	-	J	ko:K07571	-	ko00000	S1 RNA binding domain
GEMNEGCL_01941	3.35e-308	tilS	2.4.2.8, 6.3.4.19	-	J	ko:K04075,ko:K15780	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000,ko03016	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
GEMNEGCL_01942	0.0	ftsH	-	-	O	ko:K03798	-	ko00000,ko00002,ko01000,ko01002,ko03110	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GEMNEGCL_01943	3.91e-214	hslO	-	-	O	ko:K04083	-	ko00000,ko03110	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
GEMNEGCL_01944	2.77e-248	dus	-	-	J	ko:K05540	-	ko00000,ko01000,ko03016	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
GEMNEGCL_01945	0.0	lysS	6.1.1.6	-	J	ko:K04567	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family
GEMNEGCL_01946	1.06e-247	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
GEMNEGCL_01947	8.64e-107	rlmH	2.1.1.177	-	J	ko:K00783	-	ko00000,ko01000,ko03009	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
GEMNEGCL_01948	3.17e-224	htrA	3.4.21.107	-	O	ko:K04771	ko01503,ko02020,map01503,map02020	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	serine protease
GEMNEGCL_01949	1.19e-188	vicX	3.1.26.11	-	S	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	domain protein
GEMNEGCL_01950	7.44e-192	yycI	-	-	S	-	-	-	YycH protein
GEMNEGCL_01951	0.0	yycH	-	-	S	-	-	-	YycH protein
GEMNEGCL_01952	0.0	vicK	2.7.13.3	-	T	ko:K07652	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
GEMNEGCL_01953	3.98e-169	yycF	-	-	K	ko:K07668	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator
GEMNEGCL_01955	4.42e-87	crcB1	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
GEMNEGCL_01956	2.95e-84	crcB	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
GEMNEGCL_01957	1.31e-16	mmuM	2.1.1.10	-	H	ko:K00547	ko00270,ko01100,ko01110,map00270,map01100,map01110	ko00000,ko00001,ko01000	homocysteine S-methyltransferase
GEMNEGCL_01958	3.03e-145	ybgF	-	-	E	ko:K02205,ko:K03293,ko:K16235,ko:K16236	-	ko00000,ko02000	amino acid
GEMNEGCL_01959	0.0	pepV	3.5.1.18	-	E	ko:K01270,ko:K01274,ko:K01439	ko00300,ko00480,ko01100,ko01120,ko01230,map00300,map00480,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	dipeptidase PepV
GEMNEGCL_01960	9.58e-122	-	-	-	C	-	-	-	Pyridoxamine 5'-phosphate oxidase
GEMNEGCL_01961	0.0	-	-	-	E	-	-	-	Amino acid permease
GEMNEGCL_01962	0.0	speA	4.1.1.17, 4.1.1.18, 4.1.1.19	-	E	ko:K01581,ko:K01582,ko:K01585	ko00310,ko00330,ko00480,ko00960,ko01100,ko01110,ko01130,map00310,map00330,map00480,map00960,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Orn/Lys/Arg decarboxylase, C-terminal domain
GEMNEGCL_01963	1.43e-310	ynbB	-	-	P	-	-	-	aluminum resistance
GEMNEGCL_01964	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
GEMNEGCL_01965	1.51e-198	-	-	-	I	-	-	-	transferase activity, transferring acyl groups other than amino-acyl groups
GEMNEGCL_01966	0.0	glcD	1.1.3.15	-	C	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	ko00000,ko00001,ko01000	FAD linked oxidases, C-terminal domain
GEMNEGCL_01967	0.0	agl	3.2.1.20	GH31	G	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 31 family
GEMNEGCL_01968	0.0	-	-	-	S	ko:K06921	-	ko00000	Archaea bacterial proteins of unknown function
GEMNEGCL_01969	1.89e-23	-	-	-	-	-	-	-	-
GEMNEGCL_01970	7.34e-178	-	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
GEMNEGCL_01971	2.08e-164	-	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
GEMNEGCL_01972	0.0	comA	-	-	V	ko:K06147,ko:K06148,ko:K12292,ko:K20344	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko01000,ko02000	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
GEMNEGCL_01973	7.86e-138	mesE	-	-	M	ko:K12293,ko:K20345	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko02000	Transport protein ComB
GEMNEGCL_01974	5.02e-180	blpT	-	-	-	-	-	-	-
GEMNEGCL_01978	7.87e-30	-	-	-	-	-	-	-	-
GEMNEGCL_01979	4.74e-107	-	-	-	-	-	-	-	-
GEMNEGCL_01980	6.32e-42	-	-	-	K	ko:K07727	-	ko00000,ko03000	Transcriptional regulator
GEMNEGCL_01981	2.52e-32	-	-	-	-	-	-	-	-
GEMNEGCL_01982	3.41e-88	-	-	-	-	-	-	-	-
GEMNEGCL_01983	3.09e-212	natA	-	-	S	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_01984	6.39e-279	natB	-	-	CP	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
GEMNEGCL_01985	3.14e-175	fruR	-	-	K	ko:K03436	-	ko00000,ko03000	DeoR C terminal sensor domain
GEMNEGCL_01986	2.18e-215	pfkB	2.7.1.56	-	H	ko:K00882	ko00051,map00051	ko00000,ko00001,ko01000	Belongs to the carbohydrate kinase PfkB family. LacC subfamily
GEMNEGCL_01987	0.0	fruA	2.7.1.202	-	GT	ko:K02768,ko:K02769,ko:K02770	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphotransferase System
GEMNEGCL_01988	4.47e-56	-	-	-	K	ko:K21903	-	ko00000,ko03000	helix_turn_helix, Arsenical Resistance Operon Repressor
GEMNEGCL_01989	2.96e-210	-	-	-	P	ko:K02077	-	ko00000,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
GEMNEGCL_01990	1.63e-152	adcC	-	-	P	ko:K02074,ko:K09817,ko:K11710	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
GEMNEGCL_01991	1.59e-172	znuB	-	-	U	ko:K02075,ko:K09816	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC 3 transport family
GEMNEGCL_01992	5.22e-226	-	-	-	S	-	-	-	PFAM Archaeal ATPase
GEMNEGCL_01993	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_01994	6.16e-14	-	-	-	-	-	-	-	-
GEMNEGCL_01995	5.45e-121	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
GEMNEGCL_01996	2.77e-135	-	-	-	K	ko:K06977	-	ko00000	acetyltransferase
GEMNEGCL_01998	7.26e-287	lacE	2.7.1.207	-	G	ko:K02761,ko:K02787,ko:K02788	ko00052,ko00500,ko01100,ko02060,map00052,map00500,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
GEMNEGCL_01999	1.52e-105	-	-	-	L	-	-	-	MgsA AAA+ ATPase C terminal
GEMNEGCL_02000	1.88e-132	-	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
GEMNEGCL_02001	1.47e-243	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
GEMNEGCL_02002	3.05e-184	epsB	-	-	M	-	-	-	biosynthesis protein
GEMNEGCL_02003	5.61e-160	ywqD	-	-	D	-	-	-	Capsular exopolysaccharide family
GEMNEGCL_02004	6.64e-186	ywqE	3.1.3.48	-	GM	ko:K01104	-	ko00000,ko01000	PHP domain protein
GEMNEGCL_02005	1.26e-41	epsE2	-	-	M	-	-	-	Bacterial sugar transferase
GEMNEGCL_02006	7.59e-97	epsE2	-	-	M	-	-	-	Bacterial sugar transferase
GEMNEGCL_02007	1.68e-199	-	-	-	M	-	-	-	Glycosyltransferase
GEMNEGCL_02008	1.53e-102	-	-	-	M	-	-	-	Oligosaccharide biosynthesis protein Alg14 like
GEMNEGCL_02009	4.88e-98	-	-	-	S	-	-	-	Glycosyltransferase family 28 C-terminal domain
GEMNEGCL_02010	2.38e-130	-	-	GT4	M	ko:K19424	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
GEMNEGCL_02011	2.56e-66	-	-	-	M	-	-	-	Domain of unknown function (DUF1919)
GEMNEGCL_02012	5.18e-109	-	-	-	M	-	-	-	Glycosyltransferase like family 2
GEMNEGCL_02013	2.94e-94	-	-	-	S	-	-	-	Bacterial transferase hexapeptide (six repeats)
GEMNEGCL_02015	5.03e-76	-	-	-	K	-	-	-	Helix-turn-helix domain
GEMNEGCL_02016	1.17e-144	ppiB	5.2.1.8	-	G	ko:K03768	-	ko00000,ko01000,ko03110	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
GEMNEGCL_02017	1.05e-221	ppaC	3.6.1.1	-	C	ko:K15986	ko00190,map00190	ko00000,ko00001,ko01000	inorganic pyrophosphatase
GEMNEGCL_02018	1.11e-234	-	-	-	K	-	-	-	Transcriptional regulator
GEMNEGCL_02019	0.0	parC	-	-	L	ko:K02621	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
GEMNEGCL_02020	0.0	parE	-	-	L	ko:K02622	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
GEMNEGCL_02021	9.39e-141	plsY	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
GEMNEGCL_02022	0.0	snf	-	-	KL	-	-	-	domain protein
GEMNEGCL_02023	2.9e-48	-	-	-	-	-	-	-	-
GEMNEGCL_02024	1.24e-08	-	-	-	-	-	-	-	-
GEMNEGCL_02025	4.83e-136	pncA	-	-	Q	-	-	-	Isochorismatase family
GEMNEGCL_02026	1.51e-159	-	-	-	-	-	-	-	-
GEMNEGCL_02029	4.13e-83	-	-	-	-	-	-	-	-
GEMNEGCL_02030	3.56e-47	-	-	-	-	-	-	-	-
GEMNEGCL_02031	4.07e-245	trpS	6.1.1.2	-	J	ko:K01867	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
GEMNEGCL_02032	1.5e-116	comEB	3.5.4.12	-	F	ko:K01493	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko02044	MafB19-like deaminase
GEMNEGCL_02033	4.57e-135	-	-	-	S	ko:K06872	-	ko00000	TPM domain
GEMNEGCL_02034	1.71e-173	mgtA	3.6.3.2	-	P	ko:K01531	-	ko00000,ko01000	COG0474 Cation transport ATPase
GEMNEGCL_02035	0.0	mgtA	3.6.3.2	-	P	ko:K01531	-	ko00000,ko01000	COG0474 Cation transport ATPase
GEMNEGCL_02036	0.0	metG	6.1.1.10	-	J	ko:K01874	ko00450,ko00970,map00450,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GEMNEGCL_02037	2.72e-189	tatD	-	-	L	ko:K03424	-	ko00000,ko01000	hydrolase, TatD family
GEMNEGCL_02038	5.17e-129	rnmV	3.1.26.8	-	J	ko:K05985	-	ko00000,ko01000	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
GEMNEGCL_02039	8.93e-194	ksgA	2.1.1.182	-	J	ko:K02528	-	ko00000,ko01000,ko03009	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
GEMNEGCL_02040	9.99e-53	veg	-	-	S	-	-	-	Biofilm formation stimulator VEG
GEMNEGCL_02041	2.05e-190	purR	-	-	F	ko:K09685	-	ko00000,ko03000	pur operon repressor
GEMNEGCL_02042	1.81e-307	glmU	2.3.1.157, 2.7.7.23	-	M	ko:K04042	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
GEMNEGCL_02044	6.45e-93	-	-	-	K	-	-	-	LytTr DNA-binding domain
GEMNEGCL_02045	1.05e-119	-	-	-	S	-	-	-	membrane
GEMNEGCL_02046	2.61e-23	-	-	-	-	-	-	-	-
GEMNEGCL_02047	7.9e-255	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
GEMNEGCL_02051	7.95e-61	-	-	-	M	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
GEMNEGCL_02052	3.82e-149	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
GEMNEGCL_02053	5.14e-264	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_02054	1.82e-135	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_02055	4.4e-226	ydbI	-	-	K	-	-	-	AI-2E family transporter
GEMNEGCL_02056	3.93e-134	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase
GEMNEGCL_02057	2.55e-26	-	-	-	-	-	-	-	-
GEMNEGCL_02058	1.59e-315	-	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
GEMNEGCL_02059	8.64e-176	XK27_08845	-	-	S	ko:K05833	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_02060	4.76e-168	XK27_08840	-	-	U	ko:K05832	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
GEMNEGCL_02061	3.35e-223	ABC-SBP	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
GEMNEGCL_02062	7.75e-170	ysaA	3.1.3.5, 3.8.1.2	-	S	ko:K01560,ko:K07025,ko:K08723	ko00230,ko00240,ko00361,ko00625,ko00760,ko01100,ko01110,ko01120,map00230,map00240,map00361,map00625,map00760,map01100,map01110,map01120	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
GEMNEGCL_02063	7.2e-202	-	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
GEMNEGCL_02064	1.65e-205	yvgN	-	-	C	-	-	-	Aldo keto reductase
GEMNEGCL_02065	0.0	fusA1	-	-	J	-	-	-	elongation factor G
GEMNEGCL_02066	3.16e-192	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	haloacid dehalogenase-like hydrolase
GEMNEGCL_02067	1.07e-179	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
GEMNEGCL_02068	9.62e-247	ldhA	1.1.1.28	-	C	ko:K03778,ko:K18347	ko00620,ko01120,ko01502,ko02020,map00620,map01120,map01502,map02020	ko00000,ko00001,ko00002,ko01000,ko01504	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
GEMNEGCL_02069	1.44e-07	-	-	-	S	-	-	-	YSIRK type signal peptide
GEMNEGCL_02071	1.2e-202	xth	3.1.11.2	-	L	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	exodeoxyribonuclease III
GEMNEGCL_02072	0.0	-	-	-	E	ko:K20265	ko02024,map02024	ko00000,ko00001,ko02000	amino acid
GEMNEGCL_02073	0.0	-	-	-	L	-	-	-	Helicase C-terminal domain protein
GEMNEGCL_02074	1.03e-258	pbpX	-	-	V	-	-	-	Beta-lactamase
GEMNEGCL_02075	1.05e-289	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
GEMNEGCL_02076	4.19e-92	def2	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins
GEMNEGCL_02077	3.61e-60	-	-	-	-	-	-	-	-
GEMNEGCL_02078	4.53e-76	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
GEMNEGCL_02080	3.75e-48	-	-	-	S	-	-	-	PFAM Archaeal ATPase
GEMNEGCL_02081	6.55e-97	-	-	-	-	-	-	-	-
GEMNEGCL_02082	0.0	kup	-	-	P	ko:K03549	-	ko00000,ko02000	Transport of potassium into the cell
GEMNEGCL_02083	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
GEMNEGCL_02084	6.15e-36	-	-	-	-	-	-	-	-
GEMNEGCL_02085	5.31e-149	rsmC	2.1.1.172	-	J	ko:K00564	-	ko00000,ko01000,ko03009	Methyltransferase
GEMNEGCL_02086	1.04e-187	-	2.1.1.172	-	J	ko:K00564,ko:K10716	-	ko00000,ko01000,ko02000,ko03009	Ion channel
GEMNEGCL_02087	1.61e-72	rplL	-	-	J	ko:K02935	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
GEMNEGCL_02088	3.72e-111	rplJ	-	-	J	ko:K02864	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
GEMNEGCL_02090	5.61e-118	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
GEMNEGCL_02091	2.89e-151	phoU	-	-	P	ko:K02039	-	ko00000	Plays a role in the regulation of phosphate uptake
GEMNEGCL_02092	3.83e-178	pstB1	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
GEMNEGCL_02093	5.24e-187	pstB2	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
GEMNEGCL_02094	3.01e-197	pstA	-	-	P	ko:K02038	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphate transport system permease protein PstA
GEMNEGCL_02095	2.29e-210	pstC	-	-	P	ko:K02037	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	probably responsible for the translocation of the substrate across the membrane
GEMNEGCL_02096	5.48e-201	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
GEMNEGCL_02097	1.05e-160	rplA	-	-	J	ko:K02863	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
GEMNEGCL_02098	3.82e-90	rplK	-	-	J	ko:K02867	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
GEMNEGCL_02099	1.23e-130	nusG	-	-	K	ko:K02601	-	ko00000,ko03009,ko03021	Participates in transcription elongation, termination and antitermination
GEMNEGCL_02100	3.73e-33	secE	-	-	U	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
GEMNEGCL_02101	1.1e-309	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
GEMNEGCL_02102	1.52e-87	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
GEMNEGCL_02103	0.0	gntK	2.7.1.12	-	G	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko01000	Belongs to the FGGY kinase family
GEMNEGCL_02104	1.19e-45	-	-	-	-	-	-	-	-
GEMNEGCL_02105	1.09e-122	comX	-	-	K	ko:K03088,ko:K03091,ko:K12296	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko03000,ko03021	Belongs to the sigma-70 factor family
GEMNEGCL_02106	1.56e-177	trmH	2.1.1.185	-	J	ko:K03218	-	ko00000,ko01000,ko03009	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GEMNEGCL_02107	4.95e-98	mrnC	-	-	J	ko:K11145	-	ko00000,ko01000,ko03009	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
GEMNEGCL_02108	0.0	cysS	6.1.1.16	-	J	ko:K01883	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
GEMNEGCL_02109	0.0	gltX	6.1.1.24	-	J	ko:K09698	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GEMNEGCL_02110	0.0	radA	-	-	O	ko:K04485	-	ko00000,ko03400	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
GEMNEGCL_02111	5.22e-131	dut	3.6.1.23	-	F	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	dUTP diphosphatase
GEMNEGCL_02112	2.39e-136	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
GEMNEGCL_02113	5.34e-77	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
GEMNEGCL_02114	1.01e-33	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GEMNEGCL_02115	7.44e-129	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
GEMNEGCL_02116	7.01e-160	aapA	-	-	M	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
GEMNEGCL_02117	2.26e-153	yjhB	3.6.1.13	-	F	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	NUDIX domain
GEMNEGCL_02118	9.69e-177	oppC5	-	-	P	ko:K02034	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
GEMNEGCL_02119	1.6e-220	oppB	-	-	P	ko:K02033,ko:K02034	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
GEMNEGCL_02120	2.2e-227	oppF	-	-	P	ko:K02032	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
GEMNEGCL_02121	5.15e-247	oppD	-	-	P	ko:K02031,ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
GEMNEGCL_02122	4.4e-47	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GEMNEGCL_02123	3.69e-233	plsX	2.3.1.15	-	I	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
GEMNEGCL_02124	0.0	recG	3.6.4.12	-	L	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
GEMNEGCL_02125	0.0	yloV	-	-	S	ko:K07030	-	ko00000	DAK2 domain fusion protein YloV
GEMNEGCL_02126	8.29e-75	yloU	-	-	S	-	-	-	Asp23 family, cell envelope-related function
GEMNEGCL_02127	1.33e-35	rpmB	-	-	J	ko:K02902	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL28 family
GEMNEGCL_02128	3.12e-41	-	-	-	-	-	-	-	-
GEMNEGCL_02129	3.84e-160	thiN	2.7.6.2	-	H	ko:K00949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000	thiamine pyrophosphokinase
GEMNEGCL_02130	2.61e-154	rpe	5.1.3.1	-	G	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ribulose-phosphate 3-epimerase family
GEMNEGCL_02131	1.03e-209	rsgA	3.1.3.100	-	S	ko:K06949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
GEMNEGCL_02132	0.0	prkC	2.7.11.1	-	KLT	ko:K08884,ko:K12132	-	ko00000,ko01000,ko01001	serine threonine protein kinase
GEMNEGCL_02133	1.98e-180	stp	3.1.3.16	-	T	ko:K20074	-	ko00000,ko01000,ko01009	phosphatase
GEMNEGCL_02134	7.82e-311	sun	2.1.1.176	-	J	ko:K03500	-	ko00000,ko01000,ko03009	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
GEMNEGCL_02135	5.15e-219	fmt	2.1.2.9	-	J	ko:K00604	ko00670,ko00970,map00670,map00970	ko00000,ko00001,ko01000	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
GEMNEGCL_02136	0.0	priA	-	-	L	ko:K04066	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
GEMNEGCL_02137	2.37e-46	rpoZ	2.7.7.6	-	K	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
GEMNEGCL_02138	5.97e-145	gmk	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Essential for recycling GMP and indirectly, cGMP
GEMNEGCL_02139	2.19e-100	-	-	-	S	-	-	-	ASCH
GEMNEGCL_02140	0.0	recN	-	-	L	ko:K03631	-	ko00000,ko03400	May be involved in recombinational repair of damaged DNA
GEMNEGCL_02141	1.83e-190	rrmJ	2.1.1.226, 2.1.1.227	-	J	ko:K06442	-	ko00000,ko01000,ko03009	Ribosomal RNA large subunit methyltransferase J
GEMNEGCL_02142	4.47e-196	ispA	2.5.1.1, 2.5.1.10, 2.5.1.29	-	H	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01006	Belongs to the FPP GGPP synthase family
GEMNEGCL_02143	4.4e-47	xseB	3.1.11.6	-	L	ko:K03602	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
GEMNEGCL_02144	1.08e-238	xseA	3.1.11.6	-	L	ko:K03601	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
GEMNEGCL_02145	8.47e-182	folD	1.5.1.5, 3.5.4.9	-	F	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
GEMNEGCL_02146	3.38e-86	nusB	-	-	K	ko:K03625	-	ko00000,ko03009,ko03021	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
GEMNEGCL_02147	7.98e-93	WQ51_04310	-	-	S	ko:K10947	-	ko00000,ko03000	Asp23 family, cell envelope-related function
GEMNEGCL_02148	2.11e-133	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
GEMNEGCL_02149	2.14e-257	pepP	3.4.11.9, 3.4.13.9	-	E	ko:K01262,ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
GEMNEGCL_02150	3.94e-64	rpmA	-	-	J	ko:K02899	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL27 family
GEMNEGCL_02151	6.82e-66	rplU	-	-	J	ko:K02888	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to 23S rRNA in the presence of protein L20
GEMNEGCL_02152	5.24e-194	-	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
GEMNEGCL_02153	0.0	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2325)
GEMNEGCL_02154	0.0	-	-	-	L	-	-	-	Transposase
GEMNEGCL_02157	2.07e-38	dmpI	5.3.2.6	-	G	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Belongs to the 4-oxalocrotonate tautomerase family
GEMNEGCL_02158	0.0	-	-	-	S	-	-	-	Predicted membrane protein (DUF2207)
GEMNEGCL_02159	2.99e-202	cinI	-	-	S	ko:K06889	-	ko00000	Serine hydrolase (FSH1)
GEMNEGCL_02160	5.27e-266	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
GEMNEGCL_02162	3.02e-228	lipA	-	-	I	-	-	-	Carboxylesterase family
GEMNEGCL_02163	1.82e-86	yusI	1.20.4.1	-	P	ko:K00537	-	ko00000,ko01000	Belongs to the ArsC family
GEMNEGCL_02164	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
GEMNEGCL_02165	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
GEMNEGCL_02166	6.92e-145	supH	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
GEMNEGCL_02167	4.33e-69	-	-	-	-	-	-	-	-
GEMNEGCL_02168	8.51e-50	-	-	-	-	-	-	-	-
GEMNEGCL_02169	2.1e-82	-	-	-	S	-	-	-	Alpha beta hydrolase
GEMNEGCL_02170	2.19e-49	-	-	-	S	-	-	-	Alpha beta hydrolase
GEMNEGCL_02171	0.0	pepX	3.4.14.11	-	E	ko:K01281	-	ko00000,ko01000,ko01002	Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
GEMNEGCL_02172	2.88e-105	msrB	1.8.4.12	-	O	ko:K07305	-	ko00000,ko01000	peptide methionine sulfoxide reductase
GEMNEGCL_02173	8.74e-62	-	-	-	-	-	-	-	-
GEMNEGCL_02174	2.37e-190	-	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
GEMNEGCL_02175	0.0	lctP	-	-	C	ko:K03303	-	ko00000,ko02000	L-lactate permease
GEMNEGCL_02176	5.52e-113	-	-	-	-	-	-	-	-
GEMNEGCL_02177	0.0	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_02178	3.49e-222	prs	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
GEMNEGCL_02179	1.13e-218	-	-	-	GK	-	-	-	ROK family
GEMNEGCL_02180	4.19e-57	-	-	-	-	-	-	-	-
GEMNEGCL_02181	0.0	-	-	-	S	ko:K06885	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
GEMNEGCL_02182	1.33e-130	-	-	-	M	-	-	-	LysM domain protein
GEMNEGCL_02183	5.68e-211	-	-	-	D	-	-	-	nuclear chromosome segregation
GEMNEGCL_02184	8.92e-136	-	-	-	G	-	-	-	Phosphoglycerate mutase family
GEMNEGCL_02185	9.01e-115	-	-	-	G	-	-	-	Histidine phosphatase superfamily (branch 1)
GEMNEGCL_02186	1.9e-153	-	-	-	G	-	-	-	Antibiotic biosynthesis monooxygenase
GEMNEGCL_02187	2.67e-148	glpQ1	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
GEMNEGCL_02189	0.0	mgtA	3.6.3.2	-	P	ko:K01531	-	ko00000,ko01000	COG0474 Cation transport ATPase
GEMNEGCL_02191	1.93e-266	araT	2.6.1.57	-	E	ko:K00832,ko:K00841	ko00270,ko00300,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
GEMNEGCL_02192	1.03e-237	XK27_10475	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
GEMNEGCL_02193	3.01e-154	rpiA1	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
GEMNEGCL_02194	1.17e-185	-	-	-	K	-	-	-	SIS domain
GEMNEGCL_02195	9.6e-309	slpX	-	-	S	-	-	-	SLAP domain
GEMNEGCL_02196	5.24e-31	-	-	-	S	-	-	-	transposase or invertase
GEMNEGCL_02197	1.48e-14	-	-	-	-	-	-	-	-
GEMNEGCL_02198	7.62e-306	npr	1.11.1.1	-	C	ko:K05910	-	ko00000,ko01000	NADH oxidase
GEMNEGCL_02201	0.0	oppA2	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
GEMNEGCL_02202	1.53e-232	-	-	-	-	-	-	-	-
GEMNEGCL_02203	1.87e-159	gntR1	-	-	K	ko:K03710	-	ko00000,ko03000	UTRA
GEMNEGCL_02204	3.68e-93	tagD	2.7.7.39	-	IM	ko:K00980	ko00564,map00564	ko00000,ko00001,ko01000	Glycerol-3-phosphate cytidylyltransferase
GEMNEGCL_02205	3.81e-275	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
GEMNEGCL_02206	1.39e-160	-	-	-	S	ko:K07150	-	ko00000	Protein of unknown function (DUF554)
GEMNEGCL_02207	3.75e-79	-	-	-	-	-	-	-	-
GEMNEGCL_02208	6.04e-26	-	-	-	-	-	-	-	-
GEMNEGCL_02209	4.4e-132	rimL	-	-	J	ko:K03817	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
GEMNEGCL_02210	2.52e-76	-	-	-	-	-	-	-	-
GEMNEGCL_02211	0.0	-	-	-	S	-	-	-	ABC transporter
GEMNEGCL_02212	7.35e-174	-	-	-	S	-	-	-	Putative threonine/serine exporter
GEMNEGCL_02213	7.36e-109	-	-	-	S	-	-	-	Threonine/Serine exporter, ThrE
GEMNEGCL_02214	1.58e-143	-	-	-	S	-	-	-	Peptidase_C39 like family
GEMNEGCL_02215	1.16e-101	-	-	-	-	-	-	-	-
GEMNEGCL_02216	1.96e-226	nrdF	1.17.4.1	-	F	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GEMNEGCL_02217	4.75e-101	nrdI	-	-	F	ko:K03647	-	ko00000	NrdI Flavodoxin like
GEMNEGCL_02218	6.96e-286	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
GEMNEGCL_02219	8.77e-144	-	-	-	-	-	-	-	-
GEMNEGCL_02220	0.0	-	-	-	S	-	-	-	O-antigen ligase like membrane protein
GEMNEGCL_02221	4.52e-56	-	-	-	-	-	-	-	-
GEMNEGCL_02222	2.11e-115	gmk2	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Guanylate kinase homologues.
GEMNEGCL_02223	4.39e-116	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC/P60 family
GEMNEGCL_02224	1.28e-174	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC P60 family protein
GEMNEGCL_02225	1.73e-167	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC/P60 family
GEMNEGCL_02226	3.01e-54	-	-	-	-	-	-	-	-
GEMNEGCL_02227	1.26e-223	-	-	-	S	-	-	-	Cysteine-rich secretory protein family
GEMNEGCL_02228	1.3e-282	hflX	-	-	S	ko:K03665	-	ko00000,ko03009	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
GEMNEGCL_02232	9e-255	sigA	-	-	K	ko:K03086	-	ko00000,ko03021	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
GEMNEGCL_02233	0.0	dnaG	-	-	L	ko:K02316	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
GEMNEGCL_02234	0.0	glyS	6.1.1.14	-	J	ko:K01879	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Glycyl-tRNA synthetase beta subunit
GEMNEGCL_02235	9.03e-229	glyQ	6.1.1.14	-	J	ko:K01878	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	glycyl-tRNA synthetase alpha subunit
GEMNEGCL_02236	4.11e-173	recO	-	-	L	ko:K03584	ko03440,map03440	ko00000,ko00001,ko03400	Involved in DNA repair and RecF pathway recombination
GEMNEGCL_02237	1.37e-216	era	-	-	S	ko:K03595	-	ko00000,ko03009,ko03029	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
GEMNEGCL_02238	3.58e-129	ybeY	-	-	S	ko:K07042	-	ko00000,ko03009	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
GEMNEGCL_02239	3.51e-224	phoH	-	-	T	ko:K06217	-	ko00000	phosphate starvation-inducible protein PhoH
GEMNEGCL_02240	1.08e-92	yqeY	-	-	S	ko:K09117	-	ko00000	YqeY-like protein
GEMNEGCL_02241	4.83e-30	rpsU	-	-	J	ko:K02970	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bS21 family
GEMNEGCL_02242	6.94e-199	yqfL	2.7.11.33, 2.7.4.28	-	F	ko:K09773	-	ko00000,ko01000	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation
GEMNEGCL_02243	1.34e-22	-	-	-	S	-	-	-	CRISPR-associated protein (Cas_Csn2)
GEMNEGCL_02244	1.34e-34	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_02245	3.49e-50	-	-	-	-	-	-	-	-
GEMNEGCL_02246	1.76e-233	prs2	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
GEMNEGCL_02247	8.37e-161	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
GEMNEGCL_02248	1.11e-177	-	-	-	-	-	-	-	-
GEMNEGCL_02249	0.0	glnPH2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
GEMNEGCL_02250	1.01e-170	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_02251	7.36e-291	-	-	-	S	-	-	-	Cysteine-rich secretory protein family
GEMNEGCL_02252	2.43e-263	ddl	6.3.2.4	-	F	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Belongs to the D-alanine--D-alanine ligase family
GEMNEGCL_02253	2.45e-164	-	-	-	-	-	-	-	-
GEMNEGCL_02254	1.69e-258	yibE	-	-	S	-	-	-	overlaps another CDS with the same product name
GEMNEGCL_02255	2.23e-166	yibF	-	-	S	-	-	-	overlaps another CDS with the same product name
GEMNEGCL_02256	8.08e-201	-	-	-	I	-	-	-	alpha/beta hydrolase fold
GEMNEGCL_02257	0.0	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 31 family
GEMNEGCL_02258	3.75e-278	nagA	3.5.1.25	-	G	ko:K01443	ko00520,ko01130,map00520,map01130	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. NagA family
GEMNEGCL_02259	1.42e-18	-	-	-	-	ko:K07473	-	ko00000,ko02048	-
GEMNEGCL_02260	0.0	lepA	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
GEMNEGCL_02261	0.0	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
GEMNEGCL_02262	1.87e-58	-	-	-	-	-	-	-	-
GEMNEGCL_02263	1.63e-159	-	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	Serine dehydratase beta chain
GEMNEGCL_02264	1.56e-198	sdaAA	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
GEMNEGCL_02265	1.6e-69	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
GEMNEGCL_02266	3.32e-207	-	-	-	L	-	-	-	Transposase
GEMNEGCL_02267	2.83e-115	-	-	-	L	-	-	-	Transposase
GEMNEGCL_02268	5.17e-169	dapE	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
GEMNEGCL_02269	4.78e-308	lctO	1.13.12.4	-	C	ko:K00467,ko:K10530	ko00620,map00620	ko00000,ko00001,ko01000	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
GEMNEGCL_02270	6.69e-283	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
GEMNEGCL_02271	0.0	potE	-	-	E	-	-	-	Amino Acid
GEMNEGCL_02272	9.84e-63	-	-	-	S	-	-	-	Fic/DOC family
GEMNEGCL_02274	0.0	-	-	-	-	-	-	-	-
GEMNEGCL_02275	5.87e-110	-	-	-	-	-	-	-	-
GEMNEGCL_02276	1.92e-113	yhaH	-	-	S	-	-	-	Protein of unknown function (DUF805)
GEMNEGCL_02277	2.65e-89	-	-	-	O	-	-	-	OsmC-like protein
GEMNEGCL_02278	5.3e-264	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
GEMNEGCL_02279	3e-290	sptS	-	-	T	-	-	-	Histidine kinase
GEMNEGCL_02280	2.14e-85	dltr	-	-	K	-	-	-	response regulator
GEMNEGCL_02281	4.52e-35	dltr	-	-	K	-	-	-	response regulator
GEMNEGCL_02282	6.17e-140	-	-	-	T	-	-	-	Region found in RelA / SpoT proteins
GEMNEGCL_02283	0.0	gtfA	2.4.1.7	GH13	G	ko:K00690	ko00500,map00500	ko00000,ko00001,ko01000	Sucrose glucosyltransferase
GEMNEGCL_02284	0.0	melA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
GEMNEGCL_02285	1.72e-268	msmX	-	-	P	ko:K10112	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
GEMNEGCL_02286	1.02e-195	-	-	-	P	ko:K10119	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
GEMNEGCL_02287	8.41e-202	msmF	-	-	P	ko:K10118	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
GEMNEGCL_02288	3.19e-302	msmE	-	-	G	ko:K10117	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
GEMNEGCL_02289	3.13e-206	-	-	-	K	ko:K03484	-	ko00000,ko03000	Periplasmic binding protein domain
GEMNEGCL_02290	2.14e-48	-	-	-	-	-	-	-	-
GEMNEGCL_02291	8.29e-254	galM	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of alpha and beta anomers of maltose
GEMNEGCL_02293	1.65e-303	-	-	-	G	ko:K02027	-	ko00000,ko00002,ko02000	Bacterial extracellular solute-binding protein
GEMNEGCL_02294	1.43e-80	-	-	-	S	ko:K07006	-	ko00000	Pyridoxamine 5'-phosphate oxidase
GEMNEGCL_02295	5.93e-302	XK27_01810	-	-	S	-	-	-	Calcineurin-like phosphoesterase
GEMNEGCL_02297	0.0	-	-	-	S	-	-	-	SLAP domain
GEMNEGCL_02298	0.0	hsdR	3.1.21.3	-	L	ko:K01153	-	ko00000,ko01000,ko02048	DEAD/DEAH box helicase
GEMNEGCL_02299	1.35e-208	-	-	-	S	ko:K06926	-	ko00000	AAA domain, putative AbiEii toxin, Type IV TA system
GEMNEGCL_02300	5.22e-54	-	-	-	S	-	-	-	RloB-like protein
GEMNEGCL_02301	0.0	hsdM	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	type I restriction-modification system
GEMNEGCL_02302	5.88e-118	-	3.1.21.3	-	V	ko:K01154	-	ko00000,ko01000,ko02048	Type I restriction modification DNA specificity domain
GEMNEGCL_02303	4.81e-77	-	-	-	S	-	-	-	SIR2-like domain
GEMNEGCL_02305	1.28e-168	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902
GEMNEGCL_02306	4.81e-228	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
GEMNEGCL_02307	4.53e-209	msmX	-	-	P	ko:K10112	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
GEMNEGCL_02308	2.17e-174	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_02309	5.12e-178	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
GEMNEGCL_02310	2.85e-27	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_02311	1.75e-10	-	-	-	S	-	-	-	HicA toxin of bacterial toxin-antitoxin,
GEMNEGCL_02312	2.27e-71	-	-	-	S	-	-	-	protein encoded in hypervariable junctions of pilus gene clusters
GEMNEGCL_02313	7.26e-35	-	-	-	S	-	-	-	Protein conserved in bacteria
GEMNEGCL_02314	1.09e-74	-	-	-	-	-	-	-	-
GEMNEGCL_02315	8.23e-112	-	-	-	-	-	-	-	-
GEMNEGCL_02316	0.0	yheS_2	-	-	S	ko:K18231,ko:K19349	ko02010,map02010	br01600,ko00000,ko00001,ko01504,ko02000	ATPases associated with a variety of cellular activities
GEMNEGCL_02317	2.39e-182	-	-	-	S	-	-	-	DUF218 domain
GEMNEGCL_02318	1.06e-141	-	-	-	-	-	-	-	-
GEMNEGCL_02319	7.81e-107	-	-	-	-	-	-	-	-
GEMNEGCL_02320	1.28e-106	yicL	-	-	EG	-	-	-	EamA-like transporter family
GEMNEGCL_02321	6.7e-211	-	-	-	EG	-	-	-	EamA-like transporter family
GEMNEGCL_02322	5.7e-209	-	-	-	EG	-	-	-	EamA-like transporter family
GEMNEGCL_02323	2.52e-52	-	-	-	-	-	-	-	-
GEMNEGCL_02324	1.15e-180	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
GEMNEGCL_02326	4.26e-108	-	-	-	M	-	-	-	NlpC/P60 family
GEMNEGCL_02327	1.51e-168	cobQ	-	-	S	ko:K07009	-	ko00000	glutamine amidotransferase
GEMNEGCL_02328	6.69e-84	-	-	-	L	-	-	-	RelB antitoxin
GEMNEGCL_02329	4.91e-253	-	-	-	V	-	-	-	ABC transporter transmembrane region
GEMNEGCL_02330	5.19e-248	-	-	-	G	-	-	-	Transmembrane secretion effector
GEMNEGCL_02331	1.03e-262	-	-	-	G	-	-	-	Glycosyl hydrolases family 8
GEMNEGCL_02332	3.25e-315	-	-	-	M	-	-	-	Glycosyl transferase
GEMNEGCL_02334	9.39e-195	-	-	-	-	-	-	-	-
GEMNEGCL_02335	2.13e-171	tagA	2.4.1.187	GT26	F	ko:K05946	ko05111,map05111	ko00000,ko00001,ko01000,ko01003	Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid
GEMNEGCL_02336	2.94e-261	-	-	-	M	-	-	-	Glycosyl transferases group 1
GEMNEGCL_02337	0.0	pncB	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
GEMNEGCL_02338	1.91e-195	nadE	6.3.1.5	-	F	ko:K01916	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
GEMNEGCL_02339	2.7e-258	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
GEMNEGCL_02340	0.0	pacL	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
GEMNEGCL_02341	9.16e-287	-	-	-	M	-	-	-	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
GEMNEGCL_02342	0.0	epsU	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
GEMNEGCL_02343	5.48e-173	-	-	-	M	-	-	-	Glycosyltransferase sugar-binding region containing DXD motif
GEMNEGCL_02344	2.24e-110	ydcK	-	-	S	ko:K03095	-	ko00000	Belongs to the SprT family
GEMNEGCL_02346	3.29e-127	acmA	3.2.1.17, 3.2.1.96	-	NU	ko:K01185,ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	mannosyl-glycoprotein
GEMNEGCL_02347	0.0	pcrA	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase
GEMNEGCL_02348	0.0	ligA	6.5.1.2	-	L	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	ko00000,ko00001,ko01000,ko03032,ko03400	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
GEMNEGCL_02349	6.25e-268	camS	-	-	S	-	-	-	sex pheromone
GEMNEGCL_02350	5.42e-67	gatC	6.3.5.6, 6.3.5.7	-	J	ko:K02435	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GEMNEGCL_02351	0.0	gatA	6.3.5.6, 6.3.5.7	-	J	ko:K02433	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
GEMNEGCL_02352	0.0	gatB	6.3.5.6, 6.3.5.7	-	J	ko:K02434	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GEMNEGCL_02353	3.93e-219	dagK	2.7.1.107	-	G	ko:K07029	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko01000	Lipid kinase
GEMNEGCL_02355	1.47e-82	-	-	-	K	-	-	-	transcriptional regulator
GEMNEGCL_02356	4.83e-144	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
GEMNEGCL_02357	1.64e-65	-	-	-	-	-	-	-	-
GEMNEGCL_02358	7.58e-291	nhaC	-	-	C	ko:K03315	-	ko00000,ko02000	Na H antiporter NhaC
GEMNEGCL_02359	6.85e-255	flp	-	-	V	-	-	-	Beta-lactamase
GEMNEGCL_02360	0.0	rumA_2	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GEMNEGCL_02361	1.42e-122	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
GEMNEGCL_02366	0.0	qacA	-	-	EGP	-	-	-	Major Facilitator
GEMNEGCL_02367	1.46e-117	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
GEMNEGCL_02368	2.93e-223	-	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
GEMNEGCL_02369	2.5e-203	-	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
GEMNEGCL_02370	1.58e-101	smpB	-	-	J	ko:K03664	-	ko00000	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
GEMNEGCL_02371	0.0	rnr	-	-	J	ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko03016,ko03019	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
GEMNEGCL_02372	1.3e-40	secG	-	-	U	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
GEMNEGCL_02373	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
GEMNEGCL_02374	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
GEMNEGCL_02375	3.47e-268	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
GEMNEGCL_02376	2.04e-313	pyrC	3.5.2.3	-	F	ko:K01465	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
GEMNEGCL_02377	9.05e-231	pyrB	2.1.3.2	-	F	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the ATCase OTCase family
GEMNEGCL_02378	1.68e-121	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
GEMNEGCL_02379	1.52e-212	pyrD	1.3.1.14, 1.3.98.1	-	F	ko:K00226,ko:K17828	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
GEMNEGCL_02380	6.35e-164	pyrF	4.1.1.23	-	F	ko:K01591	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
GEMNEGCL_02381	5.5e-154	pyrE	2.4.2.10	-	F	ko:K00762	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
GEMNEGCL_02382	4.37e-132	-	-	-	GM	-	-	-	NmrA-like family
GEMNEGCL_02383	1.43e-19	-	-	-	K	-	-	-	FCD
GEMNEGCL_02384	1.45e-34	-	-	-	K	-	-	-	FCD
GEMNEGCL_02385	6.55e-76	eriC	-	-	P	ko:K03281	-	ko00000	chloride
GEMNEGCL_02386	6.08e-148	eriC	-	-	P	ko:K03281	-	ko00000	chloride
GEMNEGCL_02387	1.4e-127	-	-	-	L	-	-	-	PFAM Integrase catalytic
GEMNEGCL_02388	3.52e-71	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_02389	4.52e-196	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_02390	9e-132	-	-	-	L	-	-	-	Integrase
GEMNEGCL_02391	2.72e-89	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	Toxin-antitoxin system, toxin component, MazF family
GEMNEGCL_02392	5.32e-42	-	-	-	-	ko:K18829	-	ko00000,ko02048	-
GEMNEGCL_02393	1.24e-258	xerS	-	-	L	ko:K03733	-	ko00000,ko03036	Belongs to the 'phage' integrase family
GEMNEGCL_02394	0.0	mutS1	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
GEMNEGCL_02395	1.28e-292	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
GEMNEGCL_02396	8.73e-187	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
GEMNEGCL_02397	9.01e-287	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
GEMNEGCL_02398	3.87e-80	yneE	-	-	K	-	-	-	Transcriptional regulator
GEMNEGCL_02399	2.18e-122	yneE	-	-	K	-	-	-	Transcriptional regulator
GEMNEGCL_02400	3.58e-61	-	-	-	S	ko:K07124	-	ko00000	Enoyl-(Acyl carrier protein) reductase
GEMNEGCL_02401	5.05e-11	-	-	-	-	-	-	-	-
GEMNEGCL_02402	3.69e-54	-	-	-	L	ko:K07473	-	ko00000,ko02048	Addiction module antitoxin, RelB DinJ family
GEMNEGCL_02403	2.29e-162	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
GEMNEGCL_02404	8.06e-110	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
GEMNEGCL_02405	3.31e-154	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
GEMNEGCL_02406	3.3e-72	-	-	-	-	-	-	-	-
GEMNEGCL_02407	0.0	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	FtsX-like permease family
GEMNEGCL_02408	5.41e-172	cysA	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
GEMNEGCL_02409	2.1e-31	-	-	-	-	-	-	-	-
GEMNEGCL_02410	1.69e-06	-	-	-	-	-	-	-	-
GEMNEGCL_02411	0.0	pepD2	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
GEMNEGCL_02412	3.25e-231	ftsY	-	-	U	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
GEMNEGCL_02413	0.0	smc	-	-	D	ko:K03529	-	ko00000,ko03036	Required for chromosome condensation and partitioning
GEMNEGCL_02414	8.03e-160	rnc	3.1.26.3	-	J	ko:K03685	ko03008,ko05205,map03008,map05205	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
GEMNEGCL_02415	0.0	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_02416	1.21e-19	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_02417	5.76e-144	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_02418	2.26e-148	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
GEMNEGCL_02420	1.29e-41	-	-	-	O	-	-	-	OsmC-like protein
GEMNEGCL_02421	1.18e-78	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
GEMNEGCL_02423	3.98e-116	luxS	4.4.1.21	-	H	ko:K07173	ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111	ko00000,ko00001,ko00002,ko01000	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
GEMNEGCL_02424	2.29e-274	metE	2.1.1.14	-	E	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	methionine synthase, vitamin-B12 independent
GEMNEGCL_02425	9.66e-12	-	-	-	-	-	-	-	-
GEMNEGCL_02426	1.95e-33	-	-	-	K	ko:K07729	-	ko00000,ko03000	Helix-turn-helix XRE-family like proteins
GEMNEGCL_02429	1.72e-97	-	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
GEMNEGCL_02430	1.64e-101	-	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
GEMNEGCL_02431	0.0	comA	-	-	V	ko:K06147,ko:K06148,ko:K12292,ko:K20344	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko01000,ko02000	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
GEMNEGCL_02432	6.21e-60	-	-	-	V	ko:K20345	ko02024,map02024	ko00000,ko00001,ko02000	HlyD family secretion protein
GEMNEGCL_02436	1.71e-172	-	-	-	S	ko:K07052	-	ko00000	CAAX amino terminal protease
GEMNEGCL_02437	8.61e-54	-	-	-	S	-	-	-	Enterocin A Immunity
GEMNEGCL_02438	0.0	pepF	-	-	E	ko:K08602	-	ko00000,ko01000,ko01002	oligoendopeptidase F
GEMNEGCL_02439	5.68e-110	dps	-	-	P	ko:K04047	-	ko00000,ko03036	Belongs to the Dps family
GEMNEGCL_02440	5.61e-72	-	-	-	S	-	-	-	pyridoxamine 5-phosphate
GEMNEGCL_02441	1.85e-164	yobV3	-	-	K	-	-	-	WYL domain
GEMNEGCL_02442	2.6e-110	fnr	-	-	K	ko:K21562	-	ko00000,ko03000	Transcriptional regulator, Crp Fnr family
GEMNEGCL_02443	1.45e-102	dpsB	-	-	P	-	-	-	Belongs to the Dps family
GEMNEGCL_02444	4.22e-41	-	-	-	C	-	-	-	Heavy-metal-associated domain
GEMNEGCL_02445	0.0	cadA	3.6.3.3, 3.6.3.5	-	P	ko:K01534	-	ko00000,ko01000	E1-E2 ATPase
GEMNEGCL_02446	6.34e-40	-	-	-	S	-	-	-	Pyridoxamine 5'-phosphate oxidase
GEMNEGCL_02447	1.03e-34	-	-	-	S	-	-	-	Pyridoxamine 5'-phosphate oxidase
GEMNEGCL_02448	1.77e-220	-	-	-	S	-	-	-	Conserved hypothetical protein 698
GEMNEGCL_02450	5e-227	cbh	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
GEMNEGCL_02451	1.31e-128	-	-	-	I	-	-	-	PAP2 superfamily
GEMNEGCL_02452	1.14e-192	-	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
GEMNEGCL_02453	3.52e-311	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
GEMNEGCL_02454	2.32e-127	-	-	-	S	-	-	-	Domain of unknown function (DUF4767)
GEMNEGCL_02455	3.47e-49	yfhC	-	-	C	-	-	-	nitroreductase
GEMNEGCL_02456	8.12e-48	yfhC	-	-	C	-	-	-	nitroreductase
GEMNEGCL_02457	1.22e-174	ypbG	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	ROK family
GEMNEGCL_02458	0.0	pbg6	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
GEMNEGCL_02459	1.8e-284	pts23C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
GEMNEGCL_02460	9.5e-153	-	-	-	K	ko:K03492	-	ko00000,ko03000	UTRA
GEMNEGCL_02461	0.0	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
GEMNEGCL_02462	4.04e-94	-	-	-	S	-	-	-	Domain of unknown function (DUF3284)
GEMNEGCL_02463	0.0	celD	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
GEMNEGCL_02464	2.92e-79	-	-	-	-	-	-	-	-
GEMNEGCL_02465	2.16e-240	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
GEMNEGCL_02466	7.5e-194	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model