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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	KEGG_ko	KEGG_Pathway	BRITE	Description
CLAINKJO_00001	0.0	dnaA	-	-	L	ko:K02313	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko03032,ko03036	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CLAINKJO_00002	5.98e-265	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
CLAINKJO_00003	5.41e-47	yaaA	-	-	S	ko:K14761	-	ko00000,ko03009	S4 domain protein YaaA
CLAINKJO_00004	2.95e-262	recF	-	-	L	ko:K03629	ko03440,map03440	ko00000,ko00001,ko03400	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CLAINKJO_00005	0.0	gyrB	5.99.1.3	-	L	ko:K02470	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLAINKJO_00006	0.0	gyrA	5.99.1.3	-	L	ko:K02469	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLAINKJO_00007	4.55e-64	rpsF	-	-	J	ko:K02990	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Binds together with S18 to 16S ribosomal RNA
CLAINKJO_00008	9.42e-111	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
CLAINKJO_00009	9.36e-48	rpsR	-	-	J	ko:K02963	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CLAINKJO_00010	0.0	yybT	-	-	T	-	-	-	signaling protein consisting of a modified GGDEF domain and a DHH domain
CLAINKJO_00011	1.25e-97	rplI	-	-	J	ko:K02939	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
CLAINKJO_00012	3.65e-308	dnaB	3.6.4.12	-	L	ko:K02314	ko03030,ko04112,map03030,map04112	ko00000,ko00001,ko01000,ko03032	Participates in initiation and elongation during chromosome replication
CLAINKJO_00013	7.59e-269	yttB	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_00014	1.5e-78	-	-	-	-	-	-	-	-
CLAINKJO_00015	1.36e-212	-	-	-	S	-	-	-	Polyphosphate nucleotide phosphotransferase, PPK2 family
CLAINKJO_00016	3.52e-130	-	-	-	K	-	-	-	DNA-binding helix-turn-helix protein
CLAINKJO_00018	1.27e-94	-	-	-	K	ko:K18909	-	ko00000,ko00002,ko01504,ko03000	helix_turn_helix multiple antibiotic resistance protein
CLAINKJO_00019	0.0	lmrA	3.6.3.44	-	V	ko:K02021,ko:K18104	ko01501,ko02010,map01501,map02010	ko00000,ko00001,ko00002,ko01000,ko01504,ko02000	ABC transporter
CLAINKJO_00021	1.29e-168	yycF	-	-	K	ko:K07668	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator
CLAINKJO_00022	0.0	vicK	2.7.13.3	-	T	ko:K07652	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
CLAINKJO_00023	8.68e-316	yycH	-	-	S	-	-	-	YycH protein
CLAINKJO_00024	3.54e-193	yycI	-	-	S	-	-	-	YycH protein
CLAINKJO_00025	4.35e-197	vicX	3.1.26.11	-	S	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	domain protein
CLAINKJO_00026	1.12e-287	htrA	3.4.21.107	-	O	ko:K04771	ko01503,ko02020,map01503,map02020	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	serine protease
CLAINKJO_00027	6.77e-116	pgpA	-	-	I	-	-	-	Phosphatidylglycerophosphatase A
CLAINKJO_00028	2.57e-226	ABC-SBP	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
CLAINKJO_00029	2.63e-115	rlmH	2.1.1.177	-	J	ko:K00783	-	ko00000,ko01000,ko03009	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CLAINKJO_00031	9.06e-125	-	-	-	S	-	-	-	reductase
CLAINKJO_00032	8.85e-288	dhaT	1.1.1.202	-	C	ko:K00086	ko00561,ko00640,map00561,map00640	ko00000,ko00001,ko01000	Dehydrogenase
CLAINKJO_00033	8.4e-200	-	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
CLAINKJO_00034	1.46e-190	-	-	-	E	-	-	-	Glyoxalase-like domain
CLAINKJO_00035	2.91e-187	-	1.5.1.2	-	E	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CLAINKJO_00036	0.0	gabD	1.2.1.16, 1.2.1.20, 1.2.1.79	-	C	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Belongs to the aldehyde dehydrogenase family
CLAINKJO_00037	1.36e-198	hlyD3	-	-	M	ko:K02005	-	ko00000	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLAINKJO_00038	1.62e-165	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter
CLAINKJO_00039	8.83e-269	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	MacB-like periplasmic core domain
CLAINKJO_00040	1.16e-50	-	-	-	-	-	-	-	-
CLAINKJO_00041	0.0	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
CLAINKJO_00044	0.0	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
CLAINKJO_00045	3.65e-244	-	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
CLAINKJO_00046	9.46e-161	-	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
CLAINKJO_00049	6.86e-303	comA	-	-	V	ko:K06147,ko:K06148,ko:K12292,ko:K20344	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko01000,ko02000	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
CLAINKJO_00050	3.2e-242	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_00052	3.97e-97	-	-	-	O	-	-	-	OsmC-like protein
CLAINKJO_00053	3.11e-224	ldhD	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLAINKJO_00054	1.75e-276	-	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLAINKJO_00055	2.49e-43	-	-	-	-	-	-	-	-
CLAINKJO_00056	0.0	clpE	-	-	O	ko:K03697,ko:K04086	-	ko00000,ko03110	associated with various cellular activities
CLAINKJO_00057	5.1e-264	menC	4.2.1.113	-	H	ko:K02549	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB)
CLAINKJO_00059	1.22e-139	-	-	-	K	-	-	-	PFAM GCN5-related N-acetyltransferase
CLAINKJO_00060	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLAINKJO_00061	0.0	rexB	3.6.4.12	-	L	ko:K16899	-	ko00000,ko01000,ko03400	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
CLAINKJO_00062	0.0	addA	3.6.4.12	-	L	ko:K16898	-	ko00000,ko01000,ko03400	ATP-dependent helicase nuclease subunit A
CLAINKJO_00063	6.31e-223	malR1	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator, LacI family
CLAINKJO_00064	3.98e-276	atoB	1.1.1.88, 2.3.1.9	-	I	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the thiolase family
CLAINKJO_00065	0.0	malT	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
CLAINKJO_00066	0.0	mapA	2.4.1.8	GH65	G	ko:K00691	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	hydrolase, family 65, central catalytic
CLAINKJO_00067	5.89e-153	pgmB	5.4.2.6	-	S	ko:K01838	ko00500,map00500	ko00000,ko00001,ko01000	beta-phosphoglucomutase
CLAINKJO_00068	5.97e-92	-	-	-	-	-	-	-	-
CLAINKJO_00069	3.55e-112	-	-	-	T	-	-	-	Region found in RelA / SpoT proteins
CLAINKJO_00070	1.13e-146	dltr	-	-	K	-	-	-	response regulator
CLAINKJO_00071	4.03e-283	sptS	-	-	T	-	-	-	Histidine kinase
CLAINKJO_00072	1.72e-266	-	-	-	P	-	-	-	Voltage gated chloride channel
CLAINKJO_00073	0.0	gshAB	6.3.2.2	-	H	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the glutamate--cysteine ligase type 1 family
CLAINKJO_00074	6.13e-175	puuD	-	-	S	ko:K07010	-	ko00000,ko01002	peptidase C26
CLAINKJO_00075	1.73e-213	-	-	-	C	-	-	-	Aldo keto reductase
CLAINKJO_00076	0.0	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
CLAINKJO_00077	0.0	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Membrane domain of glycerophosphoryl diester phosphodiesterase
CLAINKJO_00078	6.51e-114	-	-	-	S	-	-	-	ECF-type riboflavin transporter, S component
CLAINKJO_00079	0.0	nox	1.6.3.4	-	C	ko:K17869	-	ko00000,ko01000	NADH oxidase
CLAINKJO_00080	6.39e-234	guaC	1.7.1.7	-	F	ko:K00364	ko00230,map00230	ko00000,ko00001,ko01000	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
CLAINKJO_00081	0.0	purA	6.3.4.4	-	F	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CLAINKJO_00082	2.86e-120	-	-	-	-	-	-	-	-
CLAINKJO_00083	1.82e-122	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CLAINKJO_00085	2.8e-143	-	-	-	K	-	-	-	Transcriptional regulator, TetR family
CLAINKJO_00086	1.94e-91	-	-	-	-	-	-	-	-
CLAINKJO_00087	0.0	tagE6	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
CLAINKJO_00088	0.0	-	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Poly(Glycerol-phosphate) alpha-glucosyltransferase
CLAINKJO_00089	0.0	-	-	-	M	-	-	-	domain protein
CLAINKJO_00090	0.0	malL	3.2.1.10	GH13	G	ko:K01182	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
CLAINKJO_00091	0.0	-	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
CLAINKJO_00092	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
CLAINKJO_00093	1.47e-265	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
CLAINKJO_00094	0.0	-	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
CLAINKJO_00095	6.91e-235	cytR	-	-	K	ko:K02529,ko:K03604	-	ko00000,ko03000	Transcriptional regulator, LacI family
CLAINKJO_00096	0.0	rumA_1	2.1.1.190, 2.1.1.35	-	J	ko:K00557,ko:K03215	-	ko00000,ko01000,ko03009,ko03016	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CLAINKJO_00097	8.9e-131	-	1.5.1.36	-	S	ko:K19784,ko:K22393	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	reductase
CLAINKJO_00098	1.89e-277	-	1.5.1.36	-	S	ko:K19784,ko:K22393,ko:K22394	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	reductase
CLAINKJO_00099	9.77e-230	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
CLAINKJO_00100	0.0	-	-	-	M	-	-	-	Rib/alpha-like repeat
CLAINKJO_00101	0.0	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_00102	0.0	serS	6.1.1.11	-	J	ko:K01875	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CLAINKJO_00103	0.0	glnP	-	-	P	ko:K02029,ko:K02030,ko:K10036	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLAINKJO_00104	5.67e-178	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_00106	7.52e-287	aapA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
CLAINKJO_00107	1.69e-278	nupG	-	-	F	ko:K03317,ko:K11535,ko:K16323	-	ko00000,ko02000	Nucleoside transporter
CLAINKJO_00108	2.47e-220	rihA	3.2.2.1	-	F	ko:K01239,ko:K01250,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	Nucleoside
CLAINKJO_00109	1.03e-208	-	1.1.1.157	-	I	ko:K00074	ko00360,ko00362,ko00650,ko01100,ko01120,map00360,map00362,map00650,map01100,map01120	ko00000,ko00001,ko01000	3-hydroxyacyl-CoA dehydrogenase
CLAINKJO_00110	1.13e-165	rsmG	2.1.1.170	-	J	ko:K03501	-	ko00000,ko01000,ko03009,ko03036	Specifically methylates the N7 position of a guanine in 16S rRNA
CLAINKJO_00111	3.57e-198	noc	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
CLAINKJO_00112	2.79e-178	soj	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	Sporulation initiation inhibitor
CLAINKJO_00113	5.63e-197	spo0J	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
CLAINKJO_00114	5.8e-43	yyzM	-	-	S	-	-	-	Bacterial protein of unknown function (DUF951)
CLAINKJO_00115	6.1e-255	ychF	-	-	J	ko:K06942	-	ko00000,ko03009	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
CLAINKJO_00116	4.44e-175	-	-	-	S	-	-	-	Protein of unknown function (DUF1129)
CLAINKJO_00117	3.97e-153	deoC	4.1.2.4	-	F	ko:K01619	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CLAINKJO_00118	1.62e-298	deoB	5.4.2.7	-	G	ko:K01839	ko00030,ko00230,map00030,map00230	ko00000,ko00001,ko01000	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CLAINKJO_00119	2.45e-304	pdp	2.4.2.2	-	F	ko:K00756	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	pyrimidine-nucleoside phosphorylase
CLAINKJO_00120	3.27e-167	deoD	2.4.2.1	-	F	ko:K03784	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Purine nucleoside phosphorylase
CLAINKJO_00121	8.26e-219	deoR	-	-	K	ko:K05346	-	ko00000,ko03000	sugar-binding domain protein
CLAINKJO_00122	8.49e-265	guaB	1.1.1.205	-	F	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
CLAINKJO_00123	9.76e-161	vanR	-	-	K	-	-	-	response regulator
CLAINKJO_00124	2.25e-265	hpk31	-	-	T	-	-	-	Histidine kinase
CLAINKJO_00125	4.83e-186	-	-	-	E	-	-	-	AzlC protein
CLAINKJO_00126	8.18e-70	-	-	-	S	-	-	-	branched-chain amino acid
CLAINKJO_00127	2.98e-174	-	-	-	K	-	-	-	LysR substrate binding domain
CLAINKJO_00128	1e-218	pyrB	2.1.3.2	-	F	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the ATCase OTCase family
CLAINKJO_00129	1.29e-314	pyrC	3.5.2.3	-	F	ko:K01465	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
CLAINKJO_00130	3.62e-216	pyrD	1.3.1.14, 1.3.98.1	-	F	ko:K00226,ko:K17828	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
CLAINKJO_00131	3.95e-167	pyrF	4.1.1.23	-	F	ko:K01591	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
CLAINKJO_00132	1.51e-147	pyrE	2.4.2.10	-	F	ko:K00762	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CLAINKJO_00133	4.32e-147	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
CLAINKJO_00134	2.62e-122	ribB	3.5.4.25, 4.1.99.12	-	H	ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CLAINKJO_00135	6.97e-293	cfa	2.1.1.79	-	M	ko:K00574	-	ko00000,ko01000	cyclopropane-fatty-acyl-phospholipid synthase
CLAINKJO_00136	6.76e-227	ydbI	-	-	K	-	-	-	AI-2E family transporter
CLAINKJO_00137	0.0	fhs	6.3.4.3	-	F	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the formate--tetrahydrofolate ligase family
CLAINKJO_00138	0.0	alsS	2.2.1.6	-	EH	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TPP enzyme family
CLAINKJO_00139	3.82e-167	budA	4.1.1.5	-	H	ko:K01575	ko00650,ko00660,map00650,map00660	ko00000,ko00001,ko01000	Belongs to the alpha-acetolactate decarboxylase family
CLAINKJO_00140	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00141	1.27e-109	purE	5.4.99.18	-	F	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CLAINKJO_00142	7.62e-270	purK	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CLAINKJO_00143	0.0	purB	4.3.2.2	-	F	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CLAINKJO_00144	2.04e-167	purC	6.3.2.6	-	F	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the SAICAR synthetase family
CLAINKJO_00145	7.76e-51	purS	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CLAINKJO_00146	5.24e-159	purQ	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CLAINKJO_00147	0.0	purL	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CLAINKJO_00148	0.0	purF	2.4.2.14	-	F	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CLAINKJO_00149	5.15e-246	purM	6.3.3.1	-	F	ko:K01933	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoribosylformylglycinamidine cyclo-ligase
CLAINKJO_00150	4.59e-133	purN	2.1.2.2	-	F	ko:K11175	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CLAINKJO_00151	0.0	purH	2.1.2.3, 3.5.4.10	-	F	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	ko00000,ko00001,ko00002,ko01000,ko04147	Bifunctional purine biosynthesis protein PurH
CLAINKJO_00152	1.6e-307	purD	6.3.4.13	-	F	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the GARS family
CLAINKJO_00153	5.27e-169	gpmA	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CLAINKJO_00154	5.43e-234	-	-	-	-	-	-	-	-
CLAINKJO_00155	1.21e-305	tyrS	6.1.1.1	-	J	ko:K01866	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CLAINKJO_00158	2.21e-87	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_00159	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_00160	2.97e-303	isp	-	-	L	-	-	-	Transposase
CLAINKJO_00161	7.42e-204	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
CLAINKJO_00162	1.69e-170	-	-	-	F	-	-	-	NUDIX domain
CLAINKJO_00163	0.0	nadC2	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CLAINKJO_00164	6.59e-131	pncA	-	-	Q	-	-	-	Isochorismatase family
CLAINKJO_00165	1.3e-263	-	-	-	O	-	-	-	ADP-ribosylglycohydrolase
CLAINKJO_00166	0.0	-	-	-	F	ko:K03457	-	ko00000	Belongs to the purine-cytosine permease (2.A.39) family
CLAINKJO_00167	1.11e-208	-	-	-	G	-	-	-	Belongs to the carbohydrate kinase PfkB family
CLAINKJO_00168	4.41e-49	hxlR	-	-	K	-	-	-	regulation of RNA biosynthetic process
CLAINKJO_00169	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00170	4.57e-304	-	-	-	EGP	-	-	-	MFS transporter, metabolite H symporter (MHS) family protein
CLAINKJO_00171	6.06e-168	-	-	-	IQ	-	-	-	dehydrogenase reductase
CLAINKJO_00172	3.2e-49	-	-	-	-	-	-	-	-
CLAINKJO_00173	1.14e-148	-	-	-	S	ko:K07118	-	ko00000	NAD(P)H-binding
CLAINKJO_00174	2.3e-52	-	-	-	S	-	-	-	Cytochrome b5-like Heme/Steroid binding domain
CLAINKJO_00175	0.0	nhaC	-	-	C	ko:K03315	-	ko00000,ko02000	Na H antiporter NhaC
CLAINKJO_00176	9.76e-233	yeaB	-	-	P	-	-	-	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CLAINKJO_00178	5.44e-127	-	-	-	S	ko:K07002	-	ko00000	Serine hydrolase
CLAINKJO_00179	1.26e-82	psiE	-	-	S	ko:K13256	-	ko00000	Phosphate-starvation-inducible E
CLAINKJO_00180	1.75e-181	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
CLAINKJO_00182	1.81e-225	ydhF	-	-	S	-	-	-	Aldo keto reductase
CLAINKJO_00183	7.26e-107	-	3.6.1.27	-	I	ko:K19302	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	PAP2 superfamily
CLAINKJO_00184	0.0	-	-	-	L	-	-	-	Helicase C-terminal domain protein
CLAINKJO_00186	0.0	-	-	-	L	-	-	-	Transposase
CLAINKJO_00187	3.67e-311	-	1.8.1.7	-	C	ko:K00383,ko:K21739	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Pyridine nucleotide-disulfide oxidoreductase
CLAINKJO_00188	1.3e-69	-	-	-	S	-	-	-	Sugar efflux transporter for intercellular exchange
CLAINKJO_00189	4.68e-160	-	-	-	-	-	-	-	-
CLAINKJO_00190	4.27e-167	XK27_08875	-	-	O	-	-	-	PFAM peptidase M10A and M12B, matrixin and adamalysin
CLAINKJO_00191	0.0	cadA	-	-	P	-	-	-	P-type ATPase
CLAINKJO_00192	1.21e-267	-	5.4.2.7	-	G	ko:K01839	ko00030,ko00230,map00030,map00230	ko00000,ko00001,ko01000	Metalloenzyme superfamily
CLAINKJO_00193	0.0	-	-	-	L	-	-	-	Transposase
CLAINKJO_00194	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00195	4.44e-11	-	-	-	-	-	-	-	-
CLAINKJO_00196	3.69e-197	-	-	-	GM	-	-	-	NAD(P)H-binding
CLAINKJO_00197	3.87e-97	ywnA	-	-	K	-	-	-	Transcriptional regulator
CLAINKJO_00198	7.22e-207	proWY	-	-	M	ko:K05845	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, substrate-binding protein, QAT family
CLAINKJO_00199	4.74e-139	proWZ	-	-	P	ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLAINKJO_00200	1.96e-178	proV	-	-	E	ko:K05847	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_00201	1.98e-127	-	-	-	P	ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, permease protein
CLAINKJO_00202	4.29e-101	msrB	1.8.4.12	-	O	ko:K07305	-	ko00000,ko01000	peptide methionine sulfoxide reductase
CLAINKJO_00203	0.0	eriC	-	-	P	ko:K03281	-	ko00000	chloride
CLAINKJO_00204	8.7e-279	-	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
CLAINKJO_00205	5.25e-140	metI	-	-	P	ko:K02072	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLAINKJO_00206	1.04e-245	metN	-	-	P	ko:K02071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLAINKJO_00207	2.51e-199	metQ	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
CLAINKJO_00208	3.47e-215	hdhL	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
CLAINKJO_00209	3.2e-242	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_00210	1.7e-280	blt	-	-	EGP	ko:K08153	-	ko00000,ko00002,ko02000	transporter
CLAINKJO_00211	1.3e-58	-	1.3.5.4	-	S	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FMN binding
CLAINKJO_00212	2.83e-152	nth	4.2.99.18	-	L	ko:K10773	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CLAINKJO_00213	0.0	ctrA	-	-	E	ko:K03294	-	ko00000	amino acid
CLAINKJO_00214	0.0	gabT	2.6.1.19, 5.1.1.21	-	E	ko:K00823,ko:K20708	ko00250,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00410,map00640,map00650,map01100,map01120	ko00000,ko00001,ko00002,ko01000,ko01007	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CLAINKJO_00216	1.1e-260	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
CLAINKJO_00217	0.0	-	-	-	L	-	-	-	DNA helicase
CLAINKJO_00218	7.04e-107	ndk	2.7.4.6	-	F	ko:K00940	ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016	ko00000,ko00001,ko00002,ko01000,ko04131	Belongs to the NDK family
CLAINKJO_00219	0.0	-	-	-	L	-	-	-	Transposase
CLAINKJO_00220	7.18e-233	-	2.1.1.72	-	L	ko:K00571	-	ko00000,ko01000,ko02048	Belongs to the N(4) N(6)-methyltransferase family
CLAINKJO_00221	1.3e-241	trpS	6.1.1.2	-	J	ko:K01867	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
CLAINKJO_00222	2.53e-214	ppx	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
CLAINKJO_00223	1.37e-288	mvaA	1.1.1.88, 2.3.1.9	-	C	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the HMG-CoA reductase family
CLAINKJO_00224	1.67e-222	-	-	-	-	-	-	-	-
CLAINKJO_00225	1.39e-166	cobB	-	-	K	ko:K12410	-	ko00000,ko01000	SIR2 family
CLAINKJO_00227	3.2e-206	yunF	-	-	F	-	-	-	Protein of unknown function DUF72
CLAINKJO_00228	0.0	metG	6.1.1.10	-	J	ko:K01874	ko00450,ko00970,map00450,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLAINKJO_00229	7.52e-200	tatD	-	-	L	ko:K03424	-	ko00000,ko01000	hydrolase, TatD family
CLAINKJO_00230	6.03e-128	rnmV	3.1.26.8	-	J	ko:K05985	-	ko00000,ko01000	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CLAINKJO_00231	1.46e-205	ksgA	2.1.1.182	-	J	ko:K02528	-	ko00000,ko01000,ko03009	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
CLAINKJO_00232	1.12e-49	veg	-	-	S	-	-	-	Biofilm formation stimulator VEG
CLAINKJO_00233	1.71e-206	ispE	2.7.1.148	-	F	ko:K00919,ko:K16924	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko02000	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CLAINKJO_00234	2.16e-210	psaA	-	-	P	ko:K02077,ko:K11707	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
CLAINKJO_00235	6.9e-158	adcC	-	-	P	ko:K02074,ko:K09817,ko:K11710	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
CLAINKJO_00236	2.49e-165	-	-	-	U	ko:K02075	-	ko00000,ko00002,ko02000	ABC 3 transport family
CLAINKJO_00237	2.09e-190	purR	-	-	F	ko:K09685	-	ko00000,ko03000	pur operon repressor
CLAINKJO_00238	1.37e-315	glmU	2.3.1.157, 2.7.7.23	-	M	ko:K04042	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CLAINKJO_00239	3.53e-229	prs	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CLAINKJO_00240	3.22e-100	-	-	-	-	-	-	-	-
CLAINKJO_00241	1.52e-14	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
CLAINKJO_00242	3.14e-150	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
CLAINKJO_00243	2.37e-31	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
CLAINKJO_00244	7.39e-187	yidA	-	-	S	-	-	-	hydrolase
CLAINKJO_00245	0.0	ywfO	-	-	S	ko:K06885	-	ko00000	HD domain protein
CLAINKJO_00246	3.43e-197	lipL	2.3.1.200, 2.3.1.204	-	H	ko:K16869,ko:K18821	-	ko00000,ko01000	biotin lipoate A B protein ligase
CLAINKJO_00247	4.91e-80	-	-	-	L	ko:K07491	-	ko00000	PFAM transposase IS200-family protein
CLAINKJO_00248	7.32e-292	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_00249	5.59e-90	ywiB	-	-	S	-	-	-	Domain of unknown function (DUF1934)
CLAINKJO_00250	5.94e-77	rpoE	-	-	K	ko:K03048	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko03021,ko03400	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
CLAINKJO_00251	0.0	pyrG	6.3.4.2	-	F	ko:K01937	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
CLAINKJO_00252	3.89e-302	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CLAINKJO_00253	9.43e-56	rpmE2	-	-	J	ko:K02909	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L31
CLAINKJO_00254	2.07e-299	pts13C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLAINKJO_00255	1.31e-212	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
CLAINKJO_00256	2.48e-161	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	sortase family
CLAINKJO_00257	4.1e-177	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
CLAINKJO_00258	5.32e-208	fba	4.1.2.13, 4.1.2.29	-	G	ko:K01624,ko:K03339	ko00010,ko00030,ko00051,ko00562,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00562,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-1,6-bisphosphate aldolase, class II
CLAINKJO_00259	3.04e-154	-	-	-	G	-	-	-	Belongs to the phosphoglycerate mutase family
CLAINKJO_00260	3.86e-112	ptpA	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLAINKJO_00261	1.41e-122	lemA	-	-	S	ko:K03744	-	ko00000	LemA family
CLAINKJO_00262	2.61e-204	htpX	-	-	O	ko:K03799	-	ko00000,ko00002,ko01000,ko01002	Belongs to the peptidase M48B family
CLAINKJO_00263	0.0	murF	6.3.2.10	-	M	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
CLAINKJO_00264	0.0	cshA	3.6.4.13	-	F	ko:K05592	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
CLAINKJO_00265	0.0	-	-	-	D	-	-	-	Domain of Unknown Function (DUF1542)
CLAINKJO_00266	0.0	-	-	-	D	-	-	-	Domain of Unknown Function (DUF1542)
CLAINKJO_00267	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_00268	2.21e-87	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_00270	5.64e-211	glsA	3.5.1.2	-	E	ko:K01425	ko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230	ko00000,ko00001,ko01000	Belongs to the glutaminase family
CLAINKJO_00271	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00272	0.0	dltD	-	-	M	ko:K03740	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
CLAINKJO_00273	1e-47	dltC	6.1.1.13	-	J	ko:K14188	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
CLAINKJO_00274	2.6e-299	dltB	-	-	M	ko:K03739	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	MBOAT, membrane-bound O-acyltransferase family
CLAINKJO_00275	0.0	dltA	6.1.1.13	-	H	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
CLAINKJO_00276	2.63e-08	dltX	-	-	S	-	-	-	D-Ala-teichoic acid biosynthesis protein
CLAINKJO_00277	7.67e-80	acpS	2.7.8.7	-	I	ko:K00997	ko00770,map00770	ko00000,ko00001,ko01000	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
CLAINKJO_00278	2.09e-267	alr	5.1.1.1, 5.1.1.5	-	E	ko:K01775,ko:K20707	ko00473,ko01100,ko01502,map00473,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLAINKJO_00279	5.31e-82	ndoA	-	-	L	ko:K07171	-	ko00000,ko01000,ko02048	Toxic component of a toxin-antitoxin (TA) module
CLAINKJO_00280	0.0	-	-	-	U	-	-	-	Belongs to the purine-cytosine permease (2.A.39) family
CLAINKJO_00281	6.48e-308	codA	3.5.4.1	-	F	ko:K01485	ko00240,ko00330,ko01100,map00240,map00330,map01100	ko00000,ko00001,ko01000	cytosine deaminase
CLAINKJO_00282	4.85e-187	mhpD	-	-	Q	ko:K02509	ko00350,ko01120,map00350,map01120	ko00000,ko00001,ko01000	hydratase
CLAINKJO_00283	3.29e-146	-	-	-	S	-	-	-	(CBS) domain
CLAINKJO_00284	1.13e-131	pth	3.1.1.29	-	J	ko:K01056	-	ko00000,ko01000,ko03012	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
CLAINKJO_00285	0.0	mfd	-	-	L	ko:K03723	ko03420,map03420	ko00000,ko00001,ko01000,ko03400	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CLAINKJO_00286	1.01e-52	yabO	-	-	J	-	-	-	S4 domain protein
CLAINKJO_00287	1.44e-74	divIC	-	-	D	ko:K13052	-	ko00000,ko03036	Septum formation initiator
CLAINKJO_00288	5.75e-103	yabR	-	-	J	ko:K07571	-	ko00000	RNA binding
CLAINKJO_00289	0.0	tilS	2.4.2.8, 6.3.4.19	-	J	ko:K04075,ko:K15780	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000,ko03016	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
CLAINKJO_00290	3.68e-125	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLAINKJO_00291	0.0	ftsH	-	-	O	ko:K03798	-	ko00000,ko00002,ko01000,ko01002,ko03110	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLAINKJO_00292	1.87e-217	hslO	-	-	O	ko:K04083	-	ko00000,ko03110	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CLAINKJO_00293	5.32e-242	dus	-	-	J	ko:K05540	-	ko00000,ko01000,ko03016	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLAINKJO_00294	0.0	lysS	6.1.1.6	-	J	ko:K04567	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family
CLAINKJO_00295	0.0	-	-	-	O	-	-	-	Arylsulfotransferase (ASST)
CLAINKJO_00299	2.8e-81	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_00300	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_00302	3.81e-88	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_00303	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_00304	5.14e-216	-	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
CLAINKJO_00305	5.29e-126	-	-	-	K	-	-	-	PFAM GCN5-related N-acetyltransferase
CLAINKJO_00306	6.66e-262	thiP	-	-	U	-	-	-	Belongs to the purine-cytosine permease (2.A.39) family
CLAINKJO_00307	3.7e-19	-	-	-	-	-	-	-	-
CLAINKJO_00308	1.26e-113	-	-	-	S	-	-	-	Domain of unknown function (DUF4767)
CLAINKJO_00309	4.43e-250	-	1.1.1.1	-	E	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	alcohol dehydrogenase
CLAINKJO_00310	2.26e-149	-	-	-	S	-	-	-	Membrane
CLAINKJO_00311	1.06e-159	-	-	-	O	-	-	-	Zinc-dependent metalloprotease
CLAINKJO_00312	3.82e-114	luxS	4.4.1.21	-	H	ko:K07173	ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111	ko00000,ko00001,ko00002,ko01000	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
CLAINKJO_00313	1.51e-202	metQ1	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
CLAINKJO_00314	0.0	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_00315	3.16e-148	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_00316	0.0	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_00317	0.0	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_00318	0.0	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_00319	9.52e-231	-	-	-	S	ko:K07035	-	ko00000	Phosphotransferase system, EIIC
CLAINKJO_00320	4.8e-128	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CLAINKJO_00321	8.77e-239	-	-	-	-	-	-	-	-
CLAINKJO_00322	4.25e-84	ptpA	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLAINKJO_00323	4.53e-263	-	1.1.1.90	-	C	ko:K00055	ko00350,ko00360,ko00622,ko00623,ko01100,ko01120,ko01220,map00350,map00360,map00622,map00623,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Zn-dependent alcohol dehydrogenases, class III
CLAINKJO_00324	4.87e-204	-	-	-	K	-	-	-	LysR substrate binding domain
CLAINKJO_00325	1.04e-134	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase
CLAINKJO_00326	9.08e-29	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase
CLAINKJO_00327	9.45e-126	-	-	-	K	-	-	-	acetyltransferase
CLAINKJO_00328	2.14e-234	-	-	-	-	-	-	-	-
CLAINKJO_00330	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00331	3.75e-286	amt	-	-	P	ko:K03320	-	ko00000,ko02000	ammonium transporter
CLAINKJO_00332	1.03e-127	-	-	-	S	-	-	-	AmiS/UreI family transporter
CLAINKJO_00333	3.71e-64	ureA	3.5.1.5	-	E	ko:K01430	ko00220,ko00230,ko00791,ko01100,ko01120,map00220,map00230,map00791,map01100,map01120	ko00000,ko00001,ko01000	Urease, gamma subunit
CLAINKJO_00334	6.94e-92	ureB	3.5.1.5	-	E	ko:K01429	ko00220,ko00230,ko00791,ko01100,ko01120,map00220,map00230,map00791,map01100,map01120	ko00000,ko00001,ko01000	Urease beta subunit
CLAINKJO_00335	0.0	ureC	3.5.1.5	-	E	ko:K01428	ko00220,ko00230,ko00791,ko01100,ko01120,ko05120,map00220,map00230,map00791,map01100,map01120,map05120	ko00000,ko00001,ko01000	Amidohydrolase family
CLAINKJO_00336	3.08e-102	ureE	-	-	O	ko:K03187	-	ko00000	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
CLAINKJO_00337	1.45e-170	ureF	-	-	O	ko:K03188	-	ko00000	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
CLAINKJO_00338	1.4e-145	ureG	-	-	KO	ko:K03189	-	ko00000	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CLAINKJO_00339	4.23e-212	ureD	-	-	O	ko:K03190	-	ko00000	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
CLAINKJO_00340	1.35e-237	cbiM	-	-	P	ko:K02007	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	PDGLE domain
CLAINKJO_00341	2.86e-184	-	-	-	P	ko:K02008	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Cobalt transport protein
CLAINKJO_00342	6.63e-174	-	-	-	P	ko:K02006	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLAINKJO_00343	2.14e-172	-	-	-	K	ko:K07658	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	Transcriptional regulatory protein, C-terminal domain protein
CLAINKJO_00344	4.19e-206	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
CLAINKJO_00345	9.65e-196	pstC	-	-	P	ko:K02037	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	probably responsible for the translocation of the substrate across the membrane
CLAINKJO_00346	2.58e-197	pstA	-	-	P	ko:K02038	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphate transport system permease protein PstA
CLAINKJO_00347	3.14e-177	pstB	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
CLAINKJO_00348	3.02e-162	phoU	-	-	P	ko:K02039	-	ko00000	Plays a role in the regulation of phosphate uptake
CLAINKJO_00349	2.12e-193	-	-	-	-	-	-	-	-
CLAINKJO_00350	1.18e-308	-	-	-	M	-	-	-	Glycosyl transferase
CLAINKJO_00351	4.68e-282	-	-	-	G	-	-	-	Glycosyl hydrolases family 8
CLAINKJO_00352	1.56e-178	nfrA	1.5.1.38	-	C	ko:K19285	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	nitroreductase
CLAINKJO_00353	0.0	mycA	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
CLAINKJO_00354	9.2e-303	ktrB	-	-	P	ko:K03498	-	ko00000,ko02000	Potassium uptake protein
CLAINKJO_00355	2.8e-152	ktrA	-	-	P	ko:K03499	-	ko00000,ko02000	domain protein
CLAINKJO_00356	7.87e-113	-	-	-	Q	-	-	-	Methyltransferase
CLAINKJO_00357	3.2e-242	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_00358	6.6e-294	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
CLAINKJO_00359	3.14e-227	hemH	4.99.1.1, 4.99.1.9	-	H	ko:K01772	ko00860,ko01100,ko01110,map00860,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the ferrous insertion into protoporphyrin IX
CLAINKJO_00360	5.58e-218	mccA	2.5.1.134, 2.5.1.47	-	E	ko:K01738,ko:K17216	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the cysteine synthase cystathionine beta- synthase family
CLAINKJO_00361	2.14e-123	-	-	-	S	-	-	-	NADPH-dependent FMN reductase
CLAINKJO_00362	2.04e-230	-	-	-	S	-	-	-	Conserved hypothetical protein 698
CLAINKJO_00363	4.5e-175	-	-	-	I	-	-	-	alpha/beta hydrolase fold
CLAINKJO_00364	2.93e-216	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
CLAINKJO_00365	5.22e-228	ywbN	-	-	P	ko:K07223,ko:K16301	-	ko00000,ko01000,ko02000	Peroxidase
CLAINKJO_00366	0.0	arcD	-	-	S	-	-	-	C4-dicarboxylate anaerobic carrier
CLAINKJO_00367	0.0	arcT	-	-	E	-	-	-	Dipeptidase
CLAINKJO_00368	1.49e-273	-	-	-	EGP	-	-	-	Transporter, major facilitator family protein
CLAINKJO_00369	0.0	gtfA	2.4.1.7	GH13	G	ko:K00690	ko00500,map00500	ko00000,ko00001,ko01000	Sucrose glucosyltransferase
CLAINKJO_00370	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00371	5.58e-178	-	-	-	V	-	-	-	Beta-lactamase enzyme family
CLAINKJO_00372	3.84e-280	dacA	3.4.16.4	-	M	ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
CLAINKJO_00373	7.62e-97	-	-	-	-	-	-	-	-
CLAINKJO_00374	4.47e-256	galM	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of alpha and beta anomers of maltose
CLAINKJO_00375	2.41e-31	-	-	-	-	-	-	-	-
CLAINKJO_00378	0.0	-	-	-	S	ko:K13730	ko05100,map05100	ko00000,ko00001	Uncharacterized protein conserved in bacteria (DUF2252)
CLAINKJO_00379	3.68e-214	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_00380	0.0	-	-	-	L	-	-	-	PFAM plasmid pRiA4b ORF-3 family protein
CLAINKJO_00381	3.17e-262	adh	1.1.1.1	-	C	ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	Zinc-binding alcohol dehydrogenase family protein
CLAINKJO_00382	1.66e-143	ppiB	5.2.1.8	-	G	ko:K03768	-	ko00000,ko01000,ko03110	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CLAINKJO_00383	5.85e-202	mleR	-	-	K	-	-	-	LysR family
CLAINKJO_00384	0.0	mleS	1.1.1.38, 4.1.1.101	-	C	ko:K00027,ko:K22212	ko00620,ko01120,ko01200,ko02020,map00620,map01120,map01200,map02020	ko00000,ko00001,ko01000	Malic enzyme
CLAINKJO_00385	0.0	fumC	4.2.1.2	-	C	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	ko00000,ko00001,ko00002,ko01000	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
CLAINKJO_00386	0.0	frdA	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
CLAINKJO_00387	2.2e-168	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLAINKJO_00388	3.72e-217	citP	-	-	P	ko:K03319	-	ko00000	Sodium:sulfate symporter transmembrane region
CLAINKJO_00389	1.07e-158	citR	-	-	K	-	-	-	sugar-binding domain protein
CLAINKJO_00390	9.44e-223	mae	1.1.1.38	-	C	ko:K00027	ko00620,ko01200,ko02020,map00620,map01200,map02020	ko00000,ko00001,ko01000	Malic enzyme, NAD binding domain
CLAINKJO_00391	2.31e-188	citC	6.2.1.22	-	H	ko:K01910	ko02020,map02020	ko00000,ko00001,ko01000	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
CLAINKJO_00392	2.56e-56	citD	-	-	C	ko:K01646	ko02020,map02020	ko00000,ko00001	Covalent carrier of the coenzyme of citrate lyase
CLAINKJO_00393	3.29e-204	citE	4.1.3.34	-	G	ko:K01644	ko02020,map02020	ko00000,ko00001,ko01000	Belongs to the HpcH HpaI aldolase family
CLAINKJO_00394	0.0	citF	2.8.3.10	-	H	ko:K01643	ko02020,map02020	ko00000,ko00001,ko01000	Citrate (pro-3S)-lyase alpha chain
CLAINKJO_00395	1.27e-192	citG	2.4.2.52	-	H	ko:K05966	ko02020,map02020	ko00000,ko00001,ko01000	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
CLAINKJO_00396	8.83e-144	-	-	-	I	-	-	-	Alpha/beta hydrolase family
CLAINKJO_00397	5.93e-204	-	-	-	K	-	-	-	LysR family
CLAINKJO_00398	0.0	-	-	-	S	-	-	-	Putative threonine/serine exporter
CLAINKJO_00399	6.38e-151	-	3.2.2.27	-	L	ko:K21929	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Uracil-DNA glycosylase
CLAINKJO_00400	0.0	qacA	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_00401	2.52e-237	-	-	-	I	-	-	-	Alpha beta
CLAINKJO_00402	1.3e-120	-	3.5.1.124	-	S	ko:K03152	-	ko00000,ko01000,ko01002	DJ-1/PfpI family
CLAINKJO_00403	0.0	mprF	2.3.2.3	-	S	ko:K14205	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CLAINKJO_00405	1.76e-202	yjbO	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
CLAINKJO_00406	6.4e-152	-	-	-	S	-	-	-	Domain of unknown function (DUF4811)
CLAINKJO_00407	0.0	ycnB	-	-	U	-	-	-	Belongs to the major facilitator superfamily
CLAINKJO_00408	3.21e-99	-	-	-	K	-	-	-	MerR HTH family regulatory protein
CLAINKJO_00409	2e-75	-	-	-	-	-	-	-	-
CLAINKJO_00410	0.0	rnjA	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLAINKJO_00411	1.34e-280	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
CLAINKJO_00412	3.65e-141	glnP	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLAINKJO_00413	1.01e-140	glnM	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLAINKJO_00414	5.46e-195	peb1A	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLAINKJO_00415	1.97e-173	glnQ	-	-	E	ko:K10041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_00416	4.83e-108	-	-	-	T	-	-	-	Belongs to the universal stress protein A family
CLAINKJO_00417	2.72e-141	-	-	-	S	-	-	-	VIT family
CLAINKJO_00418	7.33e-152	-	-	-	S	-	-	-	membrane
CLAINKJO_00419	1.65e-211	-	-	-	P	ko:K16264	-	ko00000,ko02000	cation diffusion facilitator family transporter
CLAINKJO_00420	2.22e-159	mntR	-	-	K	ko:K03709	-	ko00000,ko03000	iron dependent repressor
CLAINKJO_00421	2.54e-42	cspC	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock protein
CLAINKJO_00422	3.62e-167	-	-	-	S	-	-	-	Putative threonine/serine exporter
CLAINKJO_00423	1.06e-106	-	-	-	S	-	-	-	Threonine/Serine exporter, ThrE
CLAINKJO_00424	2.68e-151	-	-	-	I	-	-	-	phosphatase
CLAINKJO_00425	1.69e-07	-	2.3.1.128	-	J	ko:K03790	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
CLAINKJO_00426	0.0	lysP	-	-	E	ko:K03293,ko:K11733	-	ko00000,ko02000	amino acid
CLAINKJO_00427	7.47e-148	dgk2	-	-	F	-	-	-	deoxynucleoside kinase
CLAINKJO_00433	0.0	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
CLAINKJO_00434	5.43e-228	-	-	-	S	ko:K06889	-	ko00000	Hydrolases of the alpha beta superfamily
CLAINKJO_00435	1.8e-249	adhP	1.1.1.1	-	C	ko:K00001,ko:K13953	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	alcohol dehydrogenase
CLAINKJO_00436	2.81e-101	ctsR	-	-	K	ko:K03708	-	ko00000,ko03000	Belongs to the CtsR family
CLAINKJO_00437	0.0	clpC	-	-	O	ko:K03696	ko01100,map01100	ko00000,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
CLAINKJO_00438	2.09e-143	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
CLAINKJO_00439	0.0	rpoB	2.7.7.6	-	K	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLAINKJO_00440	0.0	rpoC	2.7.7.6	-	K	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLAINKJO_00441	5.02e-258	-	-	-	-	-	-	-	-
CLAINKJO_00442	4.83e-154	comC	3.4.23.43	-	NOU	ko:K02236	-	ko00000,ko00002,ko01000,ko02044	Bacterial Peptidase A24 N-terminal domain
CLAINKJO_00443	2.51e-94	rpsL	-	-	J	ko:K02950	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CLAINKJO_00444	2.4e-107	rpsG	-	-	J	ko:K02992	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
CLAINKJO_00445	0.0	fusA	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CLAINKJO_00446	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00447	1.28e-65	rpsJ	-	-	J	ko:K02946	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Involved in the binding of tRNA to the ribosomes
CLAINKJO_00448	5.45e-153	rplC	-	-	J	ko:K02906	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CLAINKJO_00449	6.64e-139	rplD	-	-	J	ko:K02926	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the polypeptide exit tunnel
CLAINKJO_00450	1.04e-60	rplW	-	-	J	ko:K02892	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
CLAINKJO_00451	1.16e-203	rplB	-	-	J	ko:K02886	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CLAINKJO_00452	5.72e-62	rpsS	-	-	J	ko:K02965	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CLAINKJO_00453	4.36e-70	rplV	-	-	J	ko:K02890	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CLAINKJO_00454	6.9e-157	rpsC	-	-	J	ko:K02982	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CLAINKJO_00455	1.96e-98	rplP	-	-	J	ko:K02878	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CLAINKJO_00456	5.49e-38	rpmC	-	-	J	ko:K02904	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uL29 family
CLAINKJO_00457	1.1e-55	rpsQ	-	-	J	ko:K02961	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CLAINKJO_00458	3.62e-79	rplN	-	-	J	ko:K02874	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CLAINKJO_00459	2.58e-65	rplX	-	-	J	ko:K02895	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CLAINKJO_00460	7.42e-125	rplE	-	-	J	ko:K02931	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CLAINKJO_00461	1.54e-87	rpsH	-	-	J	ko:K02994	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CLAINKJO_00462	8.7e-123	rplF	-	-	J	ko:K02933	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CLAINKJO_00463	5.03e-75	rplR	-	-	J	ko:K02881	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CLAINKJO_00464	5.95e-112	rpsE	-	-	J	ko:K02988	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CLAINKJO_00465	5.94e-34	rpmD	-	-	J	ko:K02907	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L30
CLAINKJO_00466	6.05e-93	rplO	-	-	J	ko:K02876	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
CLAINKJO_00467	2.88e-306	secY	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
CLAINKJO_00468	3.72e-160	adk	2.7.4.3	-	F	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
CLAINKJO_00469	2.41e-45	infA	-	-	J	ko:K02518	-	ko00000,ko03012	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CLAINKJO_00470	5.79e-21	rpmJ	-	-	J	ko:K02919	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL36 family
CLAINKJO_00471	1.54e-75	rpsM	-	-	J	ko:K02952	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CLAINKJO_00472	1.62e-83	rpsK	-	-	J	ko:K02948	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CLAINKJO_00473	2.19e-220	rpoA	2.7.7.6	-	K	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLAINKJO_00474	8.08e-83	rplQ	-	-	J	ko:K02879	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L17
CLAINKJO_00475	4.1e-185	ecfA1	-	-	P	ko:K16786	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLAINKJO_00476	1.18e-195	ecfA2	-	-	P	ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLAINKJO_00477	2.03e-181	ecfT	-	-	U	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLAINKJO_00478	1.5e-182	truA	5.4.99.12	-	J	ko:K06173	-	ko00000,ko01000,ko03016	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
CLAINKJO_00479	9.25e-103	rplM	-	-	J	ko:K02871	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CLAINKJO_00480	3.94e-85	rpsI	-	-	J	ko:K02996	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS9 family
CLAINKJO_00481	4.46e-180	budC	1.1.1.304, 1.1.1.76	-	IQ	ko:K03366	ko00650,map00650	ko00000,ko00001,ko01000	reductase
CLAINKJO_00482	5.09e-148	acmA	3.2.1.17, 3.2.1.96	-	NU	ko:K01185,ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	mannosyl-glycoprotein
CLAINKJO_00483	4.76e-131	xpt	2.4.2.22	-	F	ko:K03816	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
CLAINKJO_00484	9.29e-272	purK2	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
CLAINKJO_00485	0.0	pcrA	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase
CLAINKJO_00486	0.0	ligA	6.5.1.2	-	L	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	ko00000,ko00001,ko01000,ko03032,ko03400	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CLAINKJO_00487	1.11e-260	camS	-	-	S	-	-	-	sex pheromone
CLAINKJO_00488	6.49e-65	gatC	6.3.5.6, 6.3.5.7	-	J	ko:K02435	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CLAINKJO_00489	0.0	gatA	6.3.5.6, 6.3.5.7	-	J	ko:K02433	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
CLAINKJO_00490	0.0	gatB	6.3.5.6, 6.3.5.7	-	J	ko:K02434	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CLAINKJO_00491	3.86e-237	dagK	2.7.1.107	-	G	ko:K07029	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko01000	Lipid kinase
CLAINKJO_00492	0.0	rumA_2	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CLAINKJO_00493	1.73e-113	tpx	1.11.1.15	-	O	ko:K11065	-	ko00000,ko01000	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CLAINKJO_00494	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00495	5.93e-55	-	-	-	K	-	-	-	transcriptional regulator
CLAINKJO_00496	5.58e-75	-	-	-	K	-	-	-	transcriptional regulator
CLAINKJO_00497	0.0	cadA	3.6.3.3, 3.6.3.5	-	P	ko:K01534	-	ko00000,ko01000	E1-E2 ATPase
CLAINKJO_00498	2.79e-49	copZ	-	-	P	ko:K07213	ko04978,map04978	ko00000,ko00001	PFAM Heavy metal transport detoxification protein
CLAINKJO_00499	8.34e-127	dpsB	-	-	P	-	-	-	Belongs to the Dps family
CLAINKJO_00500	1.83e-143	fnr	-	-	K	ko:K21562	-	ko00000,ko03000	Transcriptional regulator, Crp Fnr family
CLAINKJO_00502	1.11e-215	-	-	-	L	-	-	-	Plasmid pRiA4b ORF-3-like protein
CLAINKJO_00504	9.77e-80	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
CLAINKJO_00505	3.2e-100	-	-	-	K	-	-	-	LytTr DNA-binding domain
CLAINKJO_00506	1.67e-188	cylB	-	-	V	ko:K11051	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC-2 type transporter
CLAINKJO_00507	9.8e-197	-	-	-	V	ko:K11050	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLAINKJO_00508	1.6e-69	-	-	-	-	-	-	-	-
CLAINKJO_00509	0.0	XK27_08510	-	-	L	-	-	-	Type III restriction protein res subunit
CLAINKJO_00510	3.2e-242	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_00511	2.08e-63	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLAINKJO_00512	1.99e-33	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLAINKJO_00513	5e-91	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLAINKJO_00514	8.38e-112	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLAINKJO_00515	1.54e-269	amt	-	-	P	ko:K03320	-	ko00000,ko02000	ammonium transporter
CLAINKJO_00516	0.0	-	1.8.1.7	-	C	ko:K00383	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	pyridine nucleotide-disulfide oxidoreductase
CLAINKJO_00517	1.43e-101	yvbK	-	-	K	-	-	-	GNAT family
CLAINKJO_00518	4.54e-52	-	-	-	-	-	-	-	-
CLAINKJO_00519	3.87e-161	pnb	-	-	C	-	-	-	nitroreductase
CLAINKJO_00520	1.49e-35	XK27_00915	-	-	C	-	-	-	Luciferase-like monooxygenase
CLAINKJO_00521	1.34e-91	XK27_00915	-	-	C	-	-	-	Luciferase-like monooxygenase
CLAINKJO_00522	1.46e-41	XK27_00915	-	-	C	-	-	-	Luciferase-like monooxygenase
CLAINKJO_00523	5.55e-215	-	3.2.1.96, 3.5.1.28	GH73	M	ko:K01227,ko:K01447,ko:K13714,ko:K13731	ko00511,ko05100,map00511,map05100	ko00000,ko00001,ko01000	N-acetylmuramoyl-L-alanine amidase
CLAINKJO_00524	1.47e-95	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
CLAINKJO_00525	1.43e-100	-	-	-	K	-	-	-	LytTr DNA-binding domain
CLAINKJO_00526	1.7e-26	-	-	-	-	-	-	-	-
CLAINKJO_00527	4.8e-256	-	-	-	P	-	-	-	Major Facilitator Superfamily
CLAINKJO_00528	9.21e-153	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
CLAINKJO_00529	5.3e-104	yjcF	3.5.4.33, 4.4.1.8	-	K	ko:K02348,ko:K07000,ko:K11991,ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007,ko03016	protein acetylation
CLAINKJO_00530	2.95e-243	-	-	-	S	-	-	-	Protein of unknown function (DUF3114)
CLAINKJO_00531	0.0	gshA	6.3.2.2	-	H	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the glutamate--cysteine ligase type 1 family
CLAINKJO_00532	2.64e-213	-	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
CLAINKJO_00533	1.25e-136	-	3.2.2.10	-	S	ko:K06966	ko00230,ko00240,map00230,map00240	ko00000,ko00001,ko01000	Belongs to the LOG family
CLAINKJO_00534	4.62e-81	-	-	-	S	-	-	-	Domain of unknown function (DUF4828)
CLAINKJO_00535	5.34e-245	mocA	-	-	S	-	-	-	Oxidoreductase
CLAINKJO_00536	2.32e-298	yfmL	-	-	L	-	-	-	DEAD DEAH box helicase
CLAINKJO_00538	4.92e-265	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
CLAINKJO_00539	8.59e-98	gtcA	-	-	S	-	-	-	Teichoic acid glycosylation protein
CLAINKJO_00540	2.72e-102	ykuP	-	-	C	ko:K03839	-	ko00000	Flavodoxin
CLAINKJO_00541	4.96e-216	map	3.4.11.18	-	E	ko:K01265	-	ko00000,ko01000,ko01002	Methionine Aminopeptidase
CLAINKJO_00542	6.6e-279	arcT	-	-	E	-	-	-	Aminotransferase
CLAINKJO_00543	0.0	arcD	-	-	E	ko:K03758	-	ko00000,ko02000	Arginine ornithine antiporter
CLAINKJO_00544	0.0	potE	-	-	E	-	-	-	Amino Acid
CLAINKJO_00545	1.44e-200	rbn	-	-	S	ko:K07058	-	ko00000	Belongs to the UPF0761 family
CLAINKJO_00546	6.23e-47	-	-	-	S	-	-	-	Protein of unknown function (DUF2922)
CLAINKJO_00547	8.83e-43	-	-	-	-	-	-	-	-
CLAINKJO_00548	1.86e-173	recX	-	-	S	ko:K03565	-	ko00000,ko03400	Regulatory protein RecX
CLAINKJO_00549	4.51e-188	cps1D	-	-	M	-	-	-	Domain of unknown function (DUF4422)
CLAINKJO_00550	5.4e-223	yfdH	-	GT2	M	ko:K12999	-	ko00000,ko01000,ko01003,ko01005	Glycosyltransferase, group 2 family protein
CLAINKJO_00551	1.46e-155	-	-	-	M	-	-	-	Bacterial sugar transferase
CLAINKJO_00552	0.0	spoIIQ	-	-	M	ko:K06386	-	ko00000	Peptidase family M23
CLAINKJO_00553	0.0	-	-	-	G	-	-	-	Peptidase_C39 like family
CLAINKJO_00554	3.89e-47	-	-	-	-	-	-	-	-
CLAINKJO_00556	2.8e-81	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_00557	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_00558	6.1e-279	glf	5.4.99.9	-	M	ko:K01854	ko00052,ko00520,map00052,map00520	ko00000,ko00001,ko01000	UDP-galactopyranose mutase
CLAINKJO_00559	1.13e-309	cps1C	-	-	S	ko:K03328	-	ko00000	Membrane protein involved in the export of O-antigen and teichoic acid
CLAINKJO_00560	7.28e-84	-	-	-	-	-	-	-	-
CLAINKJO_00561	3.48e-61	-	-	-	M	-	-	-	biosynthesis protein
CLAINKJO_00562	6.55e-179	rgpB	-	GT2	M	ko:K12997	-	ko00000,ko01000,ko01003,ko01005	Glycosyltransferase, group 2 family protein
CLAINKJO_00563	5.21e-159	-	-	-	M	-	-	-	Domain of unknown function (DUF4422)
CLAINKJO_00564	4.74e-177	-	-	-	S	-	-	-	Glycosyltransferase like family
CLAINKJO_00565	1.24e-11	-	-	-	-	-	-	-	-
CLAINKJO_00566	2.52e-99	-	-	-	S	-	-	-	Bacterial membrane protein, YfhO
CLAINKJO_00567	3.12e-24	-	-	-	-	-	-	-	-
CLAINKJO_00568	3.2e-242	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_00570	0.0	-	-	CBM50	NU	ko:K02395,ko:K19223	-	ko00000,ko01000,ko01002,ko01011,ko02035	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CLAINKJO_00571	4.34e-203	rfbA	2.7.7.24	-	H	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CLAINKJO_00572	2.27e-139	rfbC	5.1.3.13	-	M	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
CLAINKJO_00573	2.32e-263	rfbB	4.2.1.46	-	M	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
CLAINKJO_00574	4.52e-200	rfbD	1.1.1.133	-	M	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
CLAINKJO_00575	0.0	-	-	-	G	-	-	-	Peptidase_C39 like family
CLAINKJO_00576	2.16e-231	yueF	-	-	S	-	-	-	AI-2E family transporter
CLAINKJO_00577	9.71e-301	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
CLAINKJO_00578	0.0	prfC	-	-	J	ko:K02837	-	ko00000,ko03012	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CLAINKJO_00579	0.0	-	-	-	M	-	-	-	NlpC/P60 family
CLAINKJO_00580	0.0	-	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
CLAINKJO_00581	0.0	bamA	-	-	GM	ko:K07277,ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko02000,ko03016,ko03019,ko03029	domain, Protein
CLAINKJO_00582	0.0	bamA	-	-	GM	ko:K07277,ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko02000,ko03016,ko03019,ko03029	domain, Protein
CLAINKJO_00583	5.91e-85	-	-	-	K	-	-	-	Transcriptional regulator, GntR family
CLAINKJO_00584	9.47e-202	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_00585	1.12e-145	-	-	-	-	-	-	-	-
CLAINKJO_00586	9.48e-183	-	-	-	G	-	-	-	MucBP domain
CLAINKJO_00587	1.56e-130	-	-	-	S	-	-	-	Pfam:DUF3816
CLAINKJO_00588	0.0	clpE	-	-	O	ko:K03697,ko:K04086	-	ko00000,ko03110	Belongs to the ClpA ClpB family
CLAINKJO_00589	1.38e-37	-	-	-	-	-	-	-	-
CLAINKJO_00590	3.69e-54	ptsH	-	-	G	ko:K11189	-	ko00000,ko02000	phosphocarrier protein HPR
CLAINKJO_00591	0.0	ptsI	2.7.3.9	-	G	ko:K08483	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLAINKJO_00592	3.64e-290	pimB	2.4.1.337	GT4	M	ko:K19002	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
CLAINKJO_00593	7.98e-253	cpoA	2.4.1.208	GT4	M	ko:K13677,ko:K13678	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
CLAINKJO_00594	1.61e-229	mprF	-	-	I	ko:K07027	-	ko00000,ko02000	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CLAINKJO_00595	2.31e-52	-	-	-	S	-	-	-	Protein of unknown function (DUF1797)
CLAINKJO_00607	1.04e-191	int2	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLAINKJO_00608	3.98e-33	-	-	-	M	-	-	-	Host cell surface-exposed lipoprotein
CLAINKJO_00610	4.5e-25	-	-	-	E	-	-	-	Zn peptidase
CLAINKJO_00611	1.24e-18	-	-	-	K	-	-	-	Peptidase S24-like
CLAINKJO_00613	1.7e-66	-	-	-	-	-	-	-	-
CLAINKJO_00616	3.72e-33	-	-	-	-	-	-	-	-
CLAINKJO_00619	3.12e-100	-	-	-	S	-	-	-	Siphovirus Gp157
CLAINKJO_00620	4.78e-307	-	-	-	L	-	-	-	Helicase C-terminal domain protein
CLAINKJO_00621	6.04e-172	-	-	-	L	-	-	-	AAA domain
CLAINKJO_00622	9.44e-110	-	-	-	-	-	-	-	-
CLAINKJO_00623	1.11e-167	-	-	-	S	-	-	-	Bifunctional DNA primase/polymerase, N-terminal
CLAINKJO_00624	2.85e-283	-	-	-	S	ko:K06919	-	ko00000	Virulence-associated protein E
CLAINKJO_00625	4.08e-13	-	-	-	K	-	-	-	sequence-specific DNA binding
CLAINKJO_00626	1.76e-74	-	-	-	S	-	-	-	VRR_NUC
CLAINKJO_00633	5.6e-84	-	-	-	S	-	-	-	Phage transcriptional regulator, ArpU family
CLAINKJO_00634	3.2e-242	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_00635	0.0	nrdD	1.1.98.6	-	F	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Ribonucleoside-triphosphate reductase
CLAINKJO_00636	3.94e-144	nrdG	1.97.1.4	-	O	ko:K04068	-	ko00000,ko01000	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CLAINKJO_00637	2.23e-204	-	-	-	O	-	-	-	Uncharacterized protein family (UPF0051)
CLAINKJO_00638	1.29e-137	-	-	-	M	-	-	-	LysM domain protein
CLAINKJO_00639	0.0	-	-	-	EP	-	-	-	Psort location Cytoplasmic, score
CLAINKJO_00640	2.13e-142	-	-	-	M	-	-	-	LysM domain protein
CLAINKJO_00641	0.0	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00642	1.2e-191	exoA	3.1.11.2	-	L	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	exodeoxyribonuclease III
CLAINKJO_00643	5.68e-298	-	1.3.1.1	-	E	ko:K17722	ko00240,ko00410,ko00770,ko01100,map00240,map00410,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CLAINKJO_00644	3.25e-309	-	1.3.1.1	-	C	ko:K17723	ko00240,ko00410,ko00770,ko01100,map00240,map00410,map00770,map01100	ko00000,ko00001,ko00002,ko01000	4Fe-4S dicluster domain
CLAINKJO_00645	1.29e-196	yeaE	-	-	S	-	-	-	Aldo keto
CLAINKJO_00646	3.13e-99	hsp	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
CLAINKJO_00647	0.0	umuC	-	-	L	ko:K03502	-	ko00000,ko03400	impB/mucB/samB family C-terminal domain
CLAINKJO_00648	9.25e-103	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
CLAINKJO_00649	2.39e-109	-	-	-	S	-	-	-	Short repeat of unknown function (DUF308)
CLAINKJO_00650	7.03e-33	-	-	-	-	-	-	-	-
CLAINKJO_00651	1.41e-134	-	-	-	V	-	-	-	VanZ like family
CLAINKJO_00652	2.01e-302	cycA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
CLAINKJO_00653	1.2e-109	perR	-	-	P	ko:K03711,ko:K09825	-	ko00000,ko03000	Belongs to the Fur family
CLAINKJO_00654	0.0	-	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_00655	9.77e-125	tag1	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	glycosylase
CLAINKJO_00656	6.66e-281	metK	2.5.1.6	-	H	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CLAINKJO_00657	0.0	leuS	6.1.1.4	-	J	ko:K01869	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Belongs to the class-I aminoacyl-tRNA synthetase family
CLAINKJO_00658	3.56e-56	-	-	-	-	-	-	-	-
CLAINKJO_00659	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
CLAINKJO_00660	9.73e-194	nnrD	4.2.1.136, 5.1.99.6	-	H	ko:K17758,ko:K17759	-	ko00000,ko01000	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CLAINKJO_00661	0.0	pepV	3.5.1.18	-	E	ko:K01270,ko:K01274,ko:K01439	ko00300,ko00480,ko01100,ko01120,ko01230,map00300,map00480,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	dipeptidase PepV
CLAINKJO_00662	4.4e-112	-	-	-	T	-	-	-	Belongs to the universal stress protein A family
CLAINKJO_00663	8.48e-227	-	-	-	NU	-	-	-	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CLAINKJO_00664	3.06e-150	dgk2	-	-	F	-	-	-	deoxynucleoside kinase
CLAINKJO_00665	1.53e-146	-	-	-	-	-	-	-	-
CLAINKJO_00666	2.41e-236	rbsR	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding proteins and sugar binding domain of LacI family
CLAINKJO_00667	5.7e-208	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLAINKJO_00668	1.78e-42	-	-	-	-	-	-	-	-
CLAINKJO_00669	1.17e-148	XK27_07085	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
CLAINKJO_00670	9.17e-59	-	-	-	-	-	-	-	-
CLAINKJO_00672	1.54e-293	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_00673	6.09e-86	-	-	-	L	ko:K07491	-	ko00000	PFAM transposase IS200-family protein
CLAINKJO_00674	5.83e-73	folB	1.13.11.81, 4.1.2.25, 5.1.99.8	-	H	ko:K01633	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CLAINKJO_00675	6.46e-121	folK	2.7.6.3	-	H	ko:K00950	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
CLAINKJO_00676	1.17e-136	folE	2.7.6.3, 3.5.4.16	-	F	ko:K00950,ko:K01495	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	GTP cyclohydrolase 1
CLAINKJO_00677	1.11e-282	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
CLAINKJO_00678	1.72e-135	folQ	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Ham1 family
CLAINKJO_00679	7.08e-272	folP	2.5.1.15	-	H	ko:K00796	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	dihydropteroate synthase
CLAINKJO_00680	5.38e-60	-	-	-	-	-	-	-	-
CLAINKJO_00681	1.22e-53	-	-	-	-	-	-	-	-
CLAINKJO_00683	2.85e-215	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLAINKJO_00684	1.45e-192	thiD	2.7.1.49, 2.7.4.7	-	H	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Phosphomethylpyrimidine kinase
CLAINKJO_00685	0.0	argS	6.1.1.19	-	J	ko:K01887	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Arginyl-tRNA synthetase
CLAINKJO_00686	0.0	pbp2A	2.4.1.129, 3.4.16.4	GT51	M	ko:K12555	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein
CLAINKJO_00687	2.42e-64	yheA	-	-	S	-	-	-	Belongs to the UPF0342 family
CLAINKJO_00688	1.3e-282	yhaO	-	-	L	ko:K03547	-	ko00000,ko03400	Ser Thr phosphatase family protein
CLAINKJO_00689	0.0	yhaN	-	-	L	-	-	-	AAA domain
CLAINKJO_00690	3.1e-175	prsA	5.2.1.8	-	M	ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
CLAINKJO_00692	1.22e-101	hit	-	-	FG	ko:K02503	-	ko00000,ko04147	histidine triad
CLAINKJO_00693	3.15e-174	ecsA	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_00694	5.69e-280	ecsB	-	-	U	ko:K01992	-	ko00000,ko00002,ko02000	ABC transporter
CLAINKJO_00695	5.3e-157	trmB	2.1.1.33	-	J	ko:K03439	-	ko00000,ko01000,ko03016	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
CLAINKJO_00696	0.0	-	-	-	D	-	-	-	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CLAINKJO_00697	0.0	tagE3	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
CLAINKJO_00698	1.01e-229	iolS	-	-	C	ko:K06607	-	ko00000,ko01000	Aldo keto reductase
CLAINKJO_00699	4.22e-214	glsA	3.5.1.2	-	E	ko:K01425	ko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230	ko00000,ko00001,ko01000	Belongs to the glutaminase family
CLAINKJO_00700	2.27e-75	-	-	-	S	-	-	-	Small secreted protein
CLAINKJO_00701	2.95e-75	ytpP	-	-	CO	-	-	-	Thioredoxin
CLAINKJO_00702	1.63e-152	ytpR	-	-	J	ko:K06878	-	ko00000	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
CLAINKJO_00703	1.49e-63	-	-	-	S	-	-	-	Bacterial toxin of type II toxin-antitoxin system, YafQ
CLAINKJO_00704	2.07e-37	-	-	-	D	ko:K19159	-	ko00000,ko02048	Antitoxin component of a toxin-antitoxin (TA) module
CLAINKJO_00705	0.0	murC	6.3.2.8	-	M	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Belongs to the MurCDEF family
CLAINKJO_00706	3.74e-153	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
CLAINKJO_00707	2.79e-153	-	-	-	S	-	-	-	Protein of unknown function (DUF1275)
CLAINKJO_00708	0.0	polA	2.7.7.7	-	L	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	ko00000,ko00001,ko01000,ko03032,ko03400	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLAINKJO_00709	2.74e-204	fpg	3.2.2.23, 4.2.99.18	-	L	ko:K10563	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
CLAINKJO_00710	1.02e-129	coaE	2.7.1.24	-	F	ko:K00859	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CLAINKJO_00711	1.63e-104	nrdR	-	-	K	ko:K07738	-	ko00000,ko03000	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CLAINKJO_00712	9.44e-298	dnaB	-	-	L	ko:K03346	-	ko00000,ko03032	replication initiation and membrane attachment
CLAINKJO_00713	2.36e-219	dnaI	-	-	L	ko:K11144	-	ko00000,ko03032	Primosomal protein DnaI
CLAINKJO_00714	1.07e-110	infC	-	-	J	ko:K02520	-	ko00000,ko03012,ko03029	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CLAINKJO_00715	1.82e-37	rpmI	-	-	J	ko:K02916	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL35 family
CLAINKJO_00716	5.46e-74	rplT	-	-	J	ko:K02887	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CLAINKJO_00717	2.23e-124	yqeG	-	-	S	ko:K07015	-	ko00000	HAD phosphatase, family IIIA
CLAINKJO_00718	9.01e-278	yqeH	-	-	S	ko:K06948	-	ko00000,ko03009	Ribosome biogenesis GTPase YqeH
CLAINKJO_00719	5.4e-63	yhbY	-	-	J	ko:K07574	-	ko00000,ko03009	RNA-binding protein
CLAINKJO_00720	8.13e-157	nadD	2.7.7.18	-	H	ko:K00969	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CLAINKJO_00721	8.14e-143	yqeK	-	-	H	-	-	-	Hydrolase, HD family
CLAINKJO_00722	1.9e-79	rsfS	-	-	J	ko:K09710	-	ko00000,ko03009	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
CLAINKJO_00723	1.69e-174	yqeM	-	-	Q	-	-	-	Methyltransferase
CLAINKJO_00724	3.47e-267	ylbM	-	-	S	-	-	-	Belongs to the UPF0348 family
CLAINKJO_00725	1.01e-129	ylbN	-	-	S	ko:K07040	-	ko00000	Uncharacterized ACR, COG1399
CLAINKJO_00726	7.21e-39	rpmF	-	-	J	ko:K02911	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bL32 family
CLAINKJO_00727	9.72e-156	csrR	-	-	K	-	-	-	response regulator
CLAINKJO_00728	0.0	arlS	2.7.13.3	-	T	ko:K18940	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
CLAINKJO_00729	9.25e-248	potE	-	-	E	-	-	-	Amino Acid
CLAINKJO_00730	6.14e-94	potE	-	-	E	-	-	-	Amino Acid
CLAINKJO_00731	1.44e-295	-	-	-	V	-	-	-	MatE
CLAINKJO_00732	9.16e-91	def2	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins
CLAINKJO_00733	5.52e-215	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
CLAINKJO_00734	6.76e-56	acyP	3.6.1.7	-	C	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	ko00000,ko00001,ko01000	Belongs to the acylphosphatase family
CLAINKJO_00735	7.76e-186	spoU	-	-	J	ko:K03437	-	ko00000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLAINKJO_00736	4.38e-118	XK27_09705	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLAINKJO_00737	5.79e-78	yodB	-	-	K	-	-	-	Transcriptional regulator, HxlR family
CLAINKJO_00738	3.66e-252	pheS	6.1.1.20	-	J	ko:K01889	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CLAINKJO_00739	0.0	pheT	6.1.1.20	-	J	ko:K01890	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
CLAINKJO_00740	2.41e-148	-	-	-	M	-	-	-	PFAM NLP P60 protein
CLAINKJO_00741	4.85e-151	udk	2.7.1.48	-	F	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Cytidine monophosphokinase
CLAINKJO_00742	6.08e-102	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
CLAINKJO_00743	7.13e-87	yneR	-	-	S	-	-	-	Belongs to the HesB IscA family
CLAINKJO_00744	0.0	-	-	-	S	-	-	-	membrane
CLAINKJO_00745	0.0	pbp2b	-	-	M	ko:K00687,ko:K12553,ko:K21465,ko:K21466	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
CLAINKJO_00746	1.53e-29	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
CLAINKJO_00747	3.96e-131	fthC	6.3.3.2	-	H	ko:K01934	ko00670,ko01100,map00670,map01100	ko00000,ko00001,ko01000	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CLAINKJO_00748	2.02e-139	gluP	3.4.21.105	-	S	ko:K19225	-	ko00000,ko01000,ko01002	Peptidase, S54 family
CLAINKJO_00749	7.07e-48	yqgQ	-	-	S	-	-	-	Bacterial protein of unknown function (DUF910)
CLAINKJO_00750	1.02e-234	glcK	2.7.1.2	-	G	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Glucokinase
CLAINKJO_00751	7.66e-88	yqhL	-	-	P	-	-	-	Rhodanese-like protein
CLAINKJO_00752	1.18e-30	-	-	-	S	-	-	-	Protein of unknown function (DUF3042)
CLAINKJO_00753	7.13e-227	miaA	2.5.1.75	-	F	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	ko00000,ko00001,ko01000,ko01006,ko03016	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CLAINKJO_00754	0.0	glnA	6.3.1.2	-	E	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	ko00000,ko00001,ko01000,ko04147	glutamine synthetase
CLAINKJO_00755	0.0	gltX	6.1.1.24	-	J	ko:K09698	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CLAINKJO_00756	1.57e-278	araT	2.6.1.57	-	E	ko:K00832,ko:K00841	ko00270,ko00300,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLAINKJO_00757	1.28e-18	-	-	-	-	-	-	-	-
CLAINKJO_00758	4.16e-198	-	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
CLAINKJO_00759	1.15e-130	msrA	1.8.4.11	-	C	ko:K07304	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CLAINKJO_00760	1.27e-66	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
CLAINKJO_00761	4e-202	-	-	-	-	-	-	-	-
CLAINKJO_00762	4.48e-234	-	-	-	-	-	-	-	-
CLAINKJO_00763	8.5e-116	-	-	-	S	-	-	-	Protein conserved in bacteria
CLAINKJO_00764	0.0	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00767	1.99e-146	-	-	-	K	-	-	-	Transcriptional regulator
CLAINKJO_00768	2.68e-67	rplU	-	-	J	ko:K02888	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to 23S rRNA in the presence of protein L20
CLAINKJO_00769	2.94e-71	ysxB	-	-	J	ko:K07584	-	ko00000	Cysteine protease Prp
CLAINKJO_00770	4.17e-60	rpmA	-	-	J	ko:K02899	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL27 family
CLAINKJO_00771	1.9e-170	-	-	-	S	ko:K06997	-	ko00000	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CLAINKJO_00772	8.69e-256	pepP	3.4.11.9, 3.4.13.9	-	E	ko:K01262,ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
CLAINKJO_00773	1.05e-148	-	-	-	J	-	-	-	2'-5' RNA ligase superfamily
CLAINKJO_00774	2.27e-93	WQ51_04310	-	-	S	ko:K10947	-	ko00000,ko03000	Asp23 family, cell envelope-related function
CLAINKJO_00775	2.24e-92	nusB	-	-	K	ko:K03625	-	ko00000,ko03009,ko03021	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CLAINKJO_00776	7.99e-193	folD	1.5.1.5, 3.5.4.9	-	F	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CLAINKJO_00777	1.26e-276	xseA	3.1.11.6	-	L	ko:K03601	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
CLAINKJO_00778	2.33e-57	xseB	3.1.11.6	-	L	ko:K03602	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
CLAINKJO_00779	7.46e-200	ispA	2.5.1.1, 2.5.1.10, 2.5.1.29	-	H	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01006	Belongs to the FPP GGPP synthase family
CLAINKJO_00780	6.89e-192	rrmJ	2.1.1.226, 2.1.1.227	-	J	ko:K06442	-	ko00000,ko01000,ko03009	Ribosomal RNA large subunit methyltransferase J
CLAINKJO_00781	1.11e-100	argR2	-	-	K	ko:K03402	-	ko00000,ko03000	Regulates arginine biosynthesis genes
CLAINKJO_00782	0.0	recN	-	-	L	ko:K03631	-	ko00000,ko03400	May be involved in recombinational repair of damaged DNA
CLAINKJO_00783	8.66e-70	-	-	-	-	-	-	-	-
CLAINKJO_00784	4.37e-148	gmk	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Essential for recycling GMP and indirectly, cGMP
CLAINKJO_00785	6.66e-43	rpoZ	2.7.7.6	-	K	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
CLAINKJO_00786	1.42e-269	coaBC	4.1.1.36, 6.3.2.5	-	H	ko:K01598,ko:K13038	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CLAINKJO_00787	0.0	priA	-	-	L	ko:K04066	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CLAINKJO_00788	5.2e-225	fmt	2.1.2.9	-	J	ko:K00604	ko00670,ko00970,map00670,map00970	ko00000,ko00001,ko01000	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CLAINKJO_00789	0.0	sun	2.1.1.176	-	J	ko:K03500	-	ko00000,ko01000,ko03009	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CLAINKJO_00790	1.05e-168	stp	3.1.3.16	-	T	ko:K20074	-	ko00000,ko01000,ko01009	phosphatase
CLAINKJO_00791	0.0	prkC	2.7.11.1	-	KLT	ko:K08884,ko:K12132	-	ko00000,ko01000,ko01001	serine threonine protein kinase
CLAINKJO_00792	2.96e-209	rsgA	3.1.3.100	-	S	ko:K06949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
CLAINKJO_00793	5.46e-152	rpe	5.1.3.1	-	G	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ribulose-phosphate 3-epimerase family
CLAINKJO_00794	3.86e-156	thiN	2.7.6.2	-	H	ko:K00949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000	thiamine pyrophosphokinase
CLAINKJO_00795	1.1e-34	rpmB	-	-	J	ko:K02902	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL28 family
CLAINKJO_00796	1.22e-76	yloU	-	-	S	-	-	-	Asp23 family, cell envelope-related function
CLAINKJO_00797	0.0	yloV	-	-	S	ko:K07030	-	ko00000	DAK2 domain fusion protein YloV
CLAINKJO_00798	0.0	recG	3.6.4.12	-	L	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CLAINKJO_00799	1.92e-240	plsX	2.3.1.15	-	I	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
CLAINKJO_00800	1.81e-50	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLAINKJO_00801	1.57e-168	rnc	3.1.26.3	-	J	ko:K03685	ko03008,ko05205,map03008,map05205	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
CLAINKJO_00802	0.0	smc	-	-	D	ko:K03529	-	ko00000,ko03036	Required for chromosome condensation and partitioning
CLAINKJO_00803	7.6e-302	ftsY	-	-	U	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
CLAINKJO_00804	4.23e-76	ylxM	-	-	S	ko:K09787	-	ko00000	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
CLAINKJO_00805	0.0	ffh	3.6.5.4	-	U	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko01000,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CLAINKJO_00806	1.21e-58	rpsP	-	-	J	ko:K02959	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bS16 family
CLAINKJO_00807	1.81e-50	ylqC	-	-	S	ko:K06960	-	ko00000	Belongs to the UPF0109 family
CLAINKJO_00808	5.33e-119	rimM	-	-	J	ko:K02860	-	ko00000,ko03009	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CLAINKJO_00809	5.46e-183	trmD	2.1.1.228	-	J	ko:K00554	-	ko00000,ko01000,ko03016	Belongs to the RNA methyltransferase TrmD family
CLAINKJO_00810	0.0	-	-	-	E	ko:K03294	-	ko00000	amino acid
CLAINKJO_00811	3.03e-83	rplS	-	-	J	ko:K02884	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
CLAINKJO_00812	1.49e-217	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLAINKJO_00813	1.42e-59	-	-	-	-	-	-	-	-
CLAINKJO_00818	7.26e-27	-	-	-	-	-	-	-	-
CLAINKJO_00820	1.28e-46	-	-	-	-	-	-	-	-
CLAINKJO_00821	1.23e-69	-	-	-	S	-	-	-	Mazg nucleotide pyrophosphohydrolase
CLAINKJO_00822	3.75e-206	xth	3.1.11.2	-	L	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	exodeoxyribonuclease III
CLAINKJO_00823	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00824	5.42e-110	-	-	-	-	-	-	-	-
CLAINKJO_00825	4.51e-237	lacR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
CLAINKJO_00826	0.0	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
CLAINKJO_00827	0.0	lacZ	3.2.1.23	-	G	ko:K12308	ko00052,map00052	ko00000,ko00001,ko01000	-beta-galactosidase
CLAINKJO_00828	1.16e-276	-	-	-	D	-	-	-	transport
CLAINKJO_00829	5.66e-33	-	-	-	D	-	-	-	transport
CLAINKJO_00830	1.62e-228	hepT	2.5.1.30	-	H	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
CLAINKJO_00831	7.74e-202	menA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	1,4-dihydroxy-2-naphthoate
CLAINKJO_00832	4.31e-166	menG	2.1.1.163, 2.1.1.201	-	H	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
CLAINKJO_00833	1.81e-291	mdtG2	-	-	EGP	ko:K08161	-	ko00000,ko02000	Transporter, major facilitator family protein
CLAINKJO_00834	2.02e-214	prpA3	3.1.3.16	-	T	ko:K01090	-	ko00000,ko01000	Calcineurin-like phosphoesterase superfamily domain
CLAINKJO_00835	3.52e-57	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CLAINKJO_00837	1.24e-154	sdhB	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	Serine dehydratase beta chain
CLAINKJO_00838	4.1e-194	sdaAA	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
CLAINKJO_00839	3.25e-136	ahpC	1.11.1.15	-	O	ko:K03386	ko04214,map04214	ko00000,ko00001,ko01000,ko04147	Peroxiredoxin
CLAINKJO_00840	0.0	-	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Thioredoxin domain
CLAINKJO_00841	4.99e-108	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_00842	0.0	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_00843	2.48e-202	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
CLAINKJO_00844	6e-244	-	-	-	M	-	-	-	transferase activity, transferring glycosyl groups
CLAINKJO_00845	1.25e-265	secY2	-	-	U	-	-	-	Part of the accessory SecA2 SecY2 system specifically required for export of
CLAINKJO_00846	0.0	-	-	-	M	-	-	-	transferase activity, transferring glycosyl groups
CLAINKJO_00847	0.0	asp2	-	-	S	ko:K12269	-	ko00000,ko02044	Accessory Sec system GspB-transporter
CLAINKJO_00848	1.04e-213	asp3	-	-	S	ko:K12270	-	ko00000,ko02044	Accessory Sec secretory system ASP3
CLAINKJO_00849	0.0	secA2	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
CLAINKJO_00850	0.0	gtf1	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
CLAINKJO_00851	0.0	gtf2	-	-	M	-	-	-	A stabilizing protein that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon. Stabilizes the glycosylation activity of Gtf1
CLAINKJO_00853	0.0	-	-	-	M	-	-	-	family 8
CLAINKJO_00854	8.14e-42	-	-	-	M	-	-	-	family 8
CLAINKJO_00855	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_00858	3.2e-242	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_00859	3.43e-23	-	-	-	UW	-	-	-	Tetratricopeptide repeat
CLAINKJO_00864	0.0	pepD4	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLAINKJO_00865	0.0	yjbQ	-	-	P	ko:K03455,ko:K03499	-	ko00000,ko02000	TrkA C-terminal domain protein
CLAINKJO_00866	1.1e-34	dmpI	5.3.2.6	-	G	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Belongs to the 4-oxalocrotonate tautomerase family
CLAINKJO_00867	0.0	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CLAINKJO_00868	2.75e-116	-	-	-	-	-	-	-	-
CLAINKJO_00869	3.26e-48	-	-	-	-	-	-	-	-
CLAINKJO_00870	3.78e-80	-	-	-	K	-	-	-	DNA-templated transcription, initiation
CLAINKJO_00871	1.23e-26	-	-	-	K	-	-	-	DNA-templated transcription, initiation
CLAINKJO_00872	2.89e-163	-	-	-	-	-	-	-	-
CLAINKJO_00873	1.22e-84	-	-	-	K	-	-	-	Transcriptional regulator, HxlR family
CLAINKJO_00874	2.3e-212	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
CLAINKJO_00875	9.4e-181	epsB	-	-	M	-	-	-	biosynthesis protein
CLAINKJO_00876	1.39e-156	ywqD	-	-	D	-	-	-	Capsular exopolysaccharide family
CLAINKJO_00877	1.44e-177	cps2D	5.1.3.2, 5.1.3.25	-	M	ko:K01784,ko:K17947	ko00052,ko00520,ko00523,ko01100,ko01130,map00052,map00520,map00523,map01100,map01130	ko00000,ko00001,ko00002,ko01000	RmlD substrate binding domain
CLAINKJO_00878	2.35e-113	tuaA	-	-	M	-	-	-	Bacterial sugar transferase
CLAINKJO_00879	2.49e-47	-	-	-	M	-	-	-	Glycosyltransferase like family 2
CLAINKJO_00880	1.67e-39	-	-	-	M	-	-	-	Glycosyltransferase
CLAINKJO_00881	1.09e-23	-	-	-	S	-	-	-	EpsG family
CLAINKJO_00882	7.07e-89	-	-	-	M	-	-	-	Glycosyltransferase sugar-binding region containing DXD motif
CLAINKJO_00883	3.08e-184	-	-	-	S	ko:K03328	-	ko00000	Membrane protein involved in the export of O-antigen and teichoic acid
CLAINKJO_00884	3.65e-203	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_00886	0.000116	ansR	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
CLAINKJO_00887	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_00888	2.8e-81	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_00890	2.03e-17	gspA	-	-	M	-	-	-	lipopolysaccharide 3-alpha-galactosyltransferase activity
CLAINKJO_00891	0.0	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
CLAINKJO_00892	1.24e-189	-	-	-	S	-	-	-	Protein of unknown function (DUF3800)
CLAINKJO_00894	0.0	snf	-	-	KL	-	-	-	domain protein
CLAINKJO_00895	3.97e-183	ywqE	3.1.3.48	-	GM	ko:K01104	-	ko00000,ko01000	PHP domain protein
CLAINKJO_00896	1.38e-225	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
CLAINKJO_00897	1.52e-263	sbcD	-	-	L	ko:K03547	-	ko00000,ko03400	SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity
CLAINKJO_00898	0.0	sbcC	-	-	L	ko:K03546	-	ko00000,ko03400	Putative exonuclease SbcCD, C subunit
CLAINKJO_00899	4.14e-135	-	-	-	L	-	-	-	nuclease
CLAINKJO_00900	0.0	XK27_00340	3.1.3.5	-	F	ko:K01081	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
CLAINKJO_00901	7.16e-90	-	-	-	-	-	-	-	-
CLAINKJO_00902	8.29e-133	-	-	-	D	ko:K04095	-	ko00000,ko03036	Fic/DOC family
CLAINKJO_00903	9.29e-157	nagB	3.5.99.6	-	G	ko:K02564	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
CLAINKJO_00904	3.16e-195	-	-	-	G	-	-	-	Belongs to the phosphoglycerate mutase family
CLAINKJO_00905	2.39e-35	-	-	-	-	-	-	-	-
CLAINKJO_00906	1.59e-68	-	-	-	-	-	-	-	-
CLAINKJO_00909	2.21e-140	-	-	-	I	-	-	-	Acid phosphatase homologues
CLAINKJO_00910	0.0	agl	3.2.1.20	GH31	G	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 31 family
CLAINKJO_00911	6.05e-291	-	-	-	P	-	-	-	Chloride transporter, ClC family
CLAINKJO_00912	7.77e-151	thiE	2.5.1.3	-	H	ko:K00788	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
CLAINKJO_00913	2.65e-188	thiD	2.7.1.49, 2.7.4.7	-	H	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Phosphomethylpyrimidine kinase
CLAINKJO_00914	2.54e-176	thiM	2.7.1.50	-	H	ko:K00878	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
CLAINKJO_00915	2.05e-66	-	-	-	-	-	-	-	-
CLAINKJO_00916	0.0	-	-	-	S	-	-	-	SEC-C Motif Domain Protein
CLAINKJO_00918	2.8e-81	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_00919	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_00920	1.7e-157	-	-	-	K	ko:K21562	-	ko00000,ko03000	Transcriptional regulator, Crp Fnr family
CLAINKJO_00921	7.41e-94	-	-	-	-	-	-	-	-
CLAINKJO_00922	2.88e-223	-	-	-	-	-	-	-	-
CLAINKJO_00923	1.85e-220	fecB	-	-	P	ko:K02016	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Periplasmic binding protein
CLAINKJO_00924	1.17e-171	fecE	3.6.3.34	-	HP	ko:K02013	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	AAA domain, putative AbiEii toxin, Type IV TA system
CLAINKJO_00925	1.52e-69	fecD	-	-	P	ko:K02015	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLAINKJO_00926	4.79e-26	-	-	-	-	-	-	-	-
CLAINKJO_00927	1.78e-121	mobA	2.7.7.77	-	H	ko:K03752	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko01000	Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor
CLAINKJO_00928	4.55e-97	mobB	-	-	H	ko:K03753	-	ko00000	molybdopterin-guanine dinucleotide biosynthesis protein
CLAINKJO_00929	6.45e-284	moeA	2.10.1.1	-	H	ko:K03750	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko01000	MoeA N-terminal region (domain I and II)
CLAINKJO_00930	2.35e-107	moaB	2.7.7.75	-	H	ko:K03638	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko01000	May be involved in the biosynthesis of molybdopterin
CLAINKJO_00931	1.69e-234	moeB	2.7.7.80	-	H	ko:K21029	ko04122,map04122	ko00000,ko00001,ko01000	ThiF family
CLAINKJO_00932	0.0	narZ	1.7.5.1	-	C	ko:K00370	ko00910,ko01120,ko02020,map00910,map01120,map02020	ko00000,ko00001,ko00002,ko01000	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CLAINKJO_00933	0.0	narH	1.7.5.1	-	C	ko:K00371	ko00910,ko01120,ko02020,map00910,map01120,map02020	ko00000,ko00001,ko00002,ko01000	4Fe-4S dicluster domain
CLAINKJO_00934	7.01e-129	narJ	-	-	C	ko:K00373	ko02020,map02020	ko00000,ko00001	nitrate reductase molybdenum cofactor assembly chaperone
CLAINKJO_00935	9.45e-168	narI	1.7.5.1	-	C	ko:K00374	ko00910,ko01120,ko02020,map00910,map01120,map02020	ko00000,ko00001,ko00002,ko01000	Nitrate reductase
CLAINKJO_00936	8.56e-193	-	-	-	EG	-	-	-	EamA-like transporter family
CLAINKJO_00937	1.15e-152	-	-	-	L	-	-	-	Integrase
CLAINKJO_00938	1.03e-203	rssA	-	-	S	-	-	-	Phospholipase, patatin family
CLAINKJO_00939	9.8e-258	xerS	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLAINKJO_00941	1.1e-74	fabZ	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
CLAINKJO_00942	0.0	accC	6.3.4.14, 6.4.1.2	-	I	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Acetyl-CoA carboxylase biotin carboxylase subunit
CLAINKJO_00943	2.19e-173	accD	2.1.3.15, 6.4.1.2	-	I	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CLAINKJO_00944	4.43e-176	accA	2.1.3.15, 6.4.1.2	-	I	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	alpha subunit
CLAINKJO_00945	1.52e-165	fabI	1.3.1.10, 1.3.1.9	-	I	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl- acyl-carrier-protein reductase NADH
CLAINKJO_00954	1.29e-72	-	-	-	-	-	-	-	-
CLAINKJO_00955	3.55e-147	frnE	5.3.4.1	-	Q	ko:K01829	-	ko00000,ko01000	DSBA-like thioredoxin domain
CLAINKJO_00956	3.2e-242	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_00957	2.62e-211	-	-	-	I	-	-	-	alpha/beta hydrolase fold
CLAINKJO_00958	3.7e-11	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLAINKJO_00959	1.54e-05	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLAINKJO_00960	2.9e-29	-	-	-	S	-	-	-	Phage derived protein Gp49-like (DUF891)
CLAINKJO_00961	9.74e-60	int2	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLAINKJO_00962	0.0	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
CLAINKJO_00963	1.55e-187	lysA2	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
CLAINKJO_00964	1.26e-43	-	-	-	S	-	-	-	Bacteriophage holin of superfamily 6 (Holin_LLH)
CLAINKJO_00971	2.65e-47	-	-	-	LM	-	-	-	gp58-like protein
CLAINKJO_00972	9.85e-175	-	-	-	M	-	-	-	Prophage endopeptidase tail
CLAINKJO_00973	7.93e-104	-	-	-	S	-	-	-	Phage tail protein
CLAINKJO_00974	0.0	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
CLAINKJO_00976	1.21e-101	-	-	-	S	-	-	-	Phage tail tube protein
CLAINKJO_00980	9.09e-65	-	-	-	S	-	-	-	Phage gp6-like head-tail connector protein
CLAINKJO_00981	2.28e-217	-	-	-	S	-	-	-	Phage capsid family
CLAINKJO_00982	2.25e-82	-	-	-	S	-	-	-	Clp protease
CLAINKJO_00983	2.22e-246	-	-	-	S	-	-	-	Phage portal protein
CLAINKJO_00984	0.0	terL	-	-	S	-	-	-	overlaps another CDS with the same product name
CLAINKJO_00985	1.49e-85	-	-	-	L	-	-	-	Phage terminase, small subunit
CLAINKJO_00986	3.46e-104	-	-	-	L	-	-	-	HNH nucleases
CLAINKJO_00987	1.47e-220	bcgIA	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	site-specific DNA-methyltransferase (adenine-specific) activity
CLAINKJO_00988	1.11e-117	-	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	site-specific DNA-methyltransferase (adenine-specific) activity
CLAINKJO_00990	1.69e-08	-	-	-	-	-	-	-	-
CLAINKJO_00992	2.5e-99	-	-	-	-	-	-	-	-
CLAINKJO_00997	1.65e-90	-	-	-	Q	-	-	-	DNA (cytosine-5-)-methyltransferase activity
CLAINKJO_01002	3.45e-159	-	-	-	-	-	-	-	-
CLAINKJO_01004	7.71e-90	-	-	-	-	-	-	-	-
CLAINKJO_01006	1.5e-184	-	-	-	L	-	-	-	DnaD domain protein
CLAINKJO_01009	1.98e-27	-	-	-	-	-	-	-	-
CLAINKJO_01015	3.17e-15	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLAINKJO_01016	1.96e-100	-	-	-	K	-	-	-	Peptidase S24-like
CLAINKJO_01018	1.92e-29	-	-	-	-	-	-	-	-
CLAINKJO_01019	1.15e-97	-	-	-	-	-	-	-	-
CLAINKJO_01020	4.71e-112	-	-	-	L	ko:K07491	-	ko00000	PFAM transposase IS200-family protein
CLAINKJO_01021	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01022	9.96e-180	int2	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLAINKJO_01024	4.58e-63	-	-	-	S	-	-	-	Lipopolysaccharide assembly protein A domain
CLAINKJO_01025	2.28e-191	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
CLAINKJO_01026	4.63e-116	ntd	2.4.2.6	-	F	ko:K08728	ko00240,map00240	ko00000,ko00001,ko01000	Nucleoside
CLAINKJO_01027	1.63e-25	-	-	-	-	-	-	-	-
CLAINKJO_01028	2.65e-212	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
CLAINKJO_01029	1.7e-148	-	-	-	S	-	-	-	Protein of unknown function (DUF421)
CLAINKJO_01030	7.27e-91	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
CLAINKJO_01031	5.85e-56	-	-	-	S	ko:K09790	-	ko00000	Protein of unknown function (DUF454)
CLAINKJO_01032	0.0	-	-	-	I	-	-	-	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLAINKJO_01033	3.3e-200	endA	-	-	V	ko:K15051	-	ko00000	DNA/RNA non-specific endonuclease
CLAINKJO_01034	0.0	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
CLAINKJO_01036	0.0	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CLAINKJO_01037	9.36e-294	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
CLAINKJO_01038	3.39e-157	-	-	-	S	-	-	-	SNARE associated Golgi protein
CLAINKJO_01039	0.0	uvrA2	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	excinuclease ABC, A subunit
CLAINKJO_01040	3.5e-70	crcB	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLAINKJO_01041	5.08e-76	crcB	-	-	D	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLAINKJO_01042	3.39e-90	-	-	-	E	-	-	-	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CLAINKJO_01043	2.58e-186	-	-	-	S	-	-	-	DUF218 domain
CLAINKJO_01044	0.0	ubiB	-	-	S	ko:K03688	-	ko00000	ABC1 family
CLAINKJO_01045	1.84e-316	yhdP	-	-	S	-	-	-	Transporter associated domain
CLAINKJO_01046	3.27e-96	atkY	-	-	K	ko:K02171	ko01501,map01501	ko00000,ko00001,ko00002,ko01504,ko03000	Copper transport repressor CopY TcrY
CLAINKJO_01047	3.38e-308	-	-	-	U	-	-	-	Belongs to the major facilitator superfamily
CLAINKJO_01049	2.8e-81	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_01050	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_01051	4.7e-98	-	-	-	S	-	-	-	UPF0756 membrane protein
CLAINKJO_01052	5.67e-102	-	-	-	S	-	-	-	Cupin domain
CLAINKJO_01053	1.11e-123	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLAINKJO_01054	3.46e-205	-	-	-	S	-	-	-	Alpha beta hydrolase
CLAINKJO_01055	4.01e-200	gspA	-	-	M	-	-	-	family 8
CLAINKJO_01056	2.14e-154	yagB	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLAINKJO_01057	4.84e-124	-	-	-	-	-	-	-	-
CLAINKJO_01058	5.72e-205	-	-	-	S	-	-	-	EDD domain protein, DegV family
CLAINKJO_01059	0.0	FbpA	-	-	K	-	-	-	Fibronectin-binding protein
CLAINKJO_01060	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
CLAINKJO_01061	1.25e-261	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the CarA family
CLAINKJO_01062	5.85e-224	rluD	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
CLAINKJO_01063	1.47e-95	lspA	3.4.23.36	-	MU	ko:K03101	ko03060,map03060	ko00000,ko00001,ko01000,ko01002	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CLAINKJO_01064	2.58e-85	esbA	-	-	S	-	-	-	Family of unknown function (DUF5322)
CLAINKJO_01065	1.88e-92	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Ribonuclease HI
CLAINKJO_01066	1.2e-282	ypsC	-	-	L	ko:K07444	-	ko00000,ko01000	Belongs to the methyltransferase superfamily
CLAINKJO_01067	6.11e-111	-	-	-	F	ko:K03647	-	ko00000	Belongs to the NrdI family
CLAINKJO_01068	6.82e-74	gpsB	-	-	D	-	-	-	Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
CLAINKJO_01069	7.96e-129	ypsA	-	-	S	-	-	-	Belongs to the UPF0398 family
CLAINKJO_01070	7.01e-153	recU	-	-	L	ko:K03700	-	ko00000,ko03400	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
CLAINKJO_01071	0.0	ponA	2.4.1.129, 3.4.16.4	GT51	M	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein 1A
CLAINKJO_01072	2.42e-208	-	-	-	EG	-	-	-	EamA-like transporter family
CLAINKJO_01073	1.75e-161	dnaD	-	-	L	ko:K02086	-	ko00000	DnaD domain protein
CLAINKJO_01074	7.78e-114	ypmB	-	-	S	-	-	-	Protein conserved in bacteria
CLAINKJO_01075	0.0	dinG	3.6.4.12	-	L	ko:K03722	-	ko00000,ko01000,ko03400	helicase involved in DNA repair and perhaps also replication
CLAINKJO_01076	3.48e-218	mvk	2.7.1.36	-	I	ko:K00869	ko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146	ko00000,ko00001,ko00002,ko01000	mevalonate kinase
CLAINKJO_01077	6.68e-215	mvaD	4.1.1.33	-	I	ko:K01597	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	diphosphomevalonate decarboxylase
CLAINKJO_01078	4.11e-274	mvaK2	2.7.4.2	-	I	ko:K00938	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	phosphomevalonate kinase
CLAINKJO_01079	8.91e-248	fni	5.3.3.2	-	C	ko:K01823	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
CLAINKJO_01080	3.35e-121	-	-	-	S	ko:K08996	-	ko00000	Protein of unknown function (DUF1440)
CLAINKJO_01081	0.0	-	-	-	L	-	-	-	Transposase
CLAINKJO_01082	0.0	melA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
CLAINKJO_01083	1.11e-237	galR	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding protein-like domain
CLAINKJO_01084	4.07e-214	scrK	2.7.1.4	-	GK	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	ROK family
CLAINKJO_01085	2.39e-229	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLAINKJO_01086	3.6e-160	lrgB	-	-	M	ko:K05339	ko02020,map02020	ko00000,ko00001	LrgB-like family
CLAINKJO_01087	3.69e-87	lrgA	-	-	S	ko:K05338	ko02020,map02020	ko00000,ko00001,ko02000	LrgA family
CLAINKJO_01088	1.68e-168	lytT	-	-	K	ko:K07705	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator receiver
CLAINKJO_01089	0.0	lytS	2.7.13.3	-	T	ko:K07704	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	LytS YhcK-type transmembrane receptor domain protein
CLAINKJO_01090	3.12e-191	-	-	-	O	-	-	-	Band 7 protein
CLAINKJO_01091	0.0	rsmF	-	-	J	-	-	-	NOL1 NOP2 sun family protein
CLAINKJO_01092	3.73e-199	yitU	3.1.3.104	-	S	ko:K21064	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
CLAINKJO_01093	2.38e-50	-	-	-	S	-	-	-	Cytochrome B5
CLAINKJO_01094	1.61e-144	nreC	-	-	K	ko:K07696	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	PFAM regulatory protein LuxR
CLAINKJO_01095	6.68e-206	-	-	-	K	ko:K20480	ko02024,map02024	ko00000,ko00001,ko03000	Helix-turn-helix
CLAINKJO_01096	1.18e-76	-	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
CLAINKJO_01097	0.0	sufB	-	-	O	ko:K07033,ko:K09014	-	ko00000	assembly protein SufB
CLAINKJO_01098	9.11e-106	nifU	-	-	C	ko:K04488	-	ko00000	SUF system FeS assembly protein, NifU family
CLAINKJO_01099	7.46e-298	sufS	2.8.1.7, 4.4.1.16	-	E	ko:K11717	ko00450,ko01100,map00450,map01100	ko00000,ko00001,ko01000	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLAINKJO_01100	7.05e-307	sufD	-	-	O	ko:K07033,ko:K09015	-	ko00000	FeS assembly protein SufD
CLAINKJO_01101	1.56e-184	sufC	-	-	O	ko:K09013	-	ko00000,ko02000	FeS assembly ATPase SufC
CLAINKJO_01102	9.89e-43	feoA	-	-	P	ko:K04758	-	ko00000,ko02000	FeoA domain
CLAINKJO_01103	0.0	feoB	-	-	P	ko:K04759	-	ko00000,ko02000	transporter of a GTP-driven Fe(2 ) uptake system
CLAINKJO_01104	0.0	menE	6.2.1.26	-	H	ko:K01911	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily
CLAINKJO_01105	4.03e-200	menB	4.1.3.36	-	H	ko:K01661	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CLAINKJO_01106	4.73e-85	yuxO	-	-	Q	-	-	-	Thioesterase superfamily
CLAINKJO_01107	1.37e-139	yvrI	-	-	K	ko:K03091,ko:K03093	-	ko00000,ko03021	sigma factor activity
CLAINKJO_01108	4.87e-262	-	-	-	G	-	-	-	Transporter, major facilitator family protein
CLAINKJO_01109	0.0	yfhO	-	-	S	-	-	-	Bacterial membrane protein YfhO
CLAINKJO_01110	6.06e-145	-	-	-	T	ko:K10716	-	ko00000,ko02000	Ion transport 2 domain protein
CLAINKJO_01111	8.76e-99	ribH	2.5.1.78	-	H	ko:K00794	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin
CLAINKJO_01112	5.32e-286	ribBA	3.5.4.25, 4.1.99.12	-	H	ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate
CLAINKJO_01113	7.98e-123	ribE	2.5.1.9	-	H	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Riboflavin synthase
CLAINKJO_01114	3.47e-227	ribD	1.1.1.193, 3.5.4.26	-	H	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	ko00000,ko00001,ko00002,ko01000	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CLAINKJO_01115	2.59e-228	rihA	-	-	F	ko:K01250	-	ko00000,ko01000	Inosine-uridine preferring nucleoside hydrolase
CLAINKJO_01117	0.0	-	-	-	L	-	-	-	PLD-like domain
CLAINKJO_01118	1.5e-48	higA	-	-	K	ko:K21498	-	ko00000,ko02048	addiction module antidote protein HigA
CLAINKJO_01119	0.0	hsdR	3.1.21.3	-	V	ko:K01153	-	ko00000,ko01000,ko02048	Subunit R is required for both nuclease and ATPase activities, but not for modification
CLAINKJO_01120	6.17e-46	-	-	-	V	-	-	-	Type I restriction modification DNA specificity domain
CLAINKJO_01121	1.44e-230	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLAINKJO_01123	5e-117	-	3.1.21.3	-	V	ko:K01154	-	ko00000,ko01000,ko02048	Type I restriction modification DNA specificity domain
CLAINKJO_01124	0.0	hsdM	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	type I restriction-modification system
CLAINKJO_01125	2.75e-105	-	-	-	S	-	-	-	Protein of unknown function (DUF805)
CLAINKJO_01126	5.13e-60	-	-	-	-	-	-	-	-
CLAINKJO_01127	5.86e-17	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_01128	1.33e-17	-	-	-	-	-	-	-	-
CLAINKJO_01129	6.51e-160	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01130	1.04e-61	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01131	1.66e-30	-	-	-	S	-	-	-	Sulphur transport
CLAINKJO_01132	1.97e-121	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_01133	2.98e-255	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_01134	5.56e-32	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_01135	7.6e-26	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_01136	2.3e-37	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_01138	1.62e-48	-	-	-	-	-	-	-	-
CLAINKJO_01139	6.54e-181	-	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
CLAINKJO_01140	4.94e-272	tagE	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
CLAINKJO_01141	2.4e-37	-	-	-	-	-	-	-	-
CLAINKJO_01142	5.73e-211	iolT	-	-	EGP	ko:K06609	-	ko00000,ko02000	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
CLAINKJO_01143	1.32e-54	-	-	-	-	-	-	-	-
CLAINKJO_01144	1.98e-07	-	-	-	-	-	-	-	-
CLAINKJO_01145	5.95e-116	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLAINKJO_01146	0.0	gntK	2.7.1.12	-	G	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko01000	Belongs to the FGGY kinase family
CLAINKJO_01147	3e-292	gntP	-	-	EG	ko:K03299	-	ko00000,ko02000	Gluconate
CLAINKJO_01148	2.66e-117	-	-	-	K	ko:K02525	-	ko00000,ko03000	Transcriptional regulator, LacI family
CLAINKJO_01149	3.2e-242	-	-	-	L	-	-	-	PFAM Integrase catalytic region
CLAINKJO_01150	4.1e-49	-	-	-	K	ko:K02525	-	ko00000,ko03000	Transcriptional regulator, LacI family
CLAINKJO_01151	0.0	gntK	2.7.1.12	-	G	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko01000	Belongs to the FGGY kinase family
CLAINKJO_01152	9.36e-124	-	-	-	-	-	-	-	-
CLAINKJO_01153	1.04e-33	-	-	-	-	-	-	-	-
CLAINKJO_01154	8.08e-83	asp1	-	-	S	-	-	-	Asp23 family, cell envelope-related function
CLAINKJO_01155	3.63e-115	ywnH	2.3.1.183	-	M	ko:K03823	ko00440,ko01130,map00440,map01130	ko00000,ko00001,ko01000	Acetyltransferase (GNAT) domain
CLAINKJO_01157	3.19e-66	-	-	-	-	-	-	-	-
CLAINKJO_01158	1.5e-88	-	-	-	S	-	-	-	Belongs to the HesB IscA family
CLAINKJO_01159	1.05e-221	ppaC	3.6.1.1	-	C	ko:K15986	ko00190,map00190	ko00000,ko00001,ko01000	inorganic pyrophosphatase
CLAINKJO_01160	3.85e-108	-	-	-	F	-	-	-	NUDIX domain
CLAINKJO_01161	0.0	parC	-	-	L	ko:K02621	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
CLAINKJO_01162	0.0	parE	-	-	L	ko:K02622	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
CLAINKJO_01163	2.29e-137	plsY	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
CLAINKJO_01164	2.99e-216	lacX	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Aldose 1-epimerase
CLAINKJO_01165	0.0	topA	5.99.1.2	-	L	ko:K03168	-	ko00000,ko01000,ko03032,ko03400	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CLAINKJO_01166	9.94e-210	dprA	-	-	LU	ko:K04096	-	ko00000	DNA protecting protein DprA
CLAINKJO_01167	4.31e-182	rnhB	3.1.26.4	-	L	ko:K03470	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CLAINKJO_01168	7.25e-207	rbgA	-	-	S	ko:K14540	-	ko00000,ko03009	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CLAINKJO_01169	1.33e-47	yozE	-	-	S	-	-	-	Belongs to the UPF0346 family
CLAINKJO_01170	2.34e-140	ypmS	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2140)
CLAINKJO_01171	1.08e-217	-	-	-	E	-	-	-	lipolytic protein G-D-S-L family
CLAINKJO_01172	1.1e-196	WQ51_01275	-	-	S	-	-	-	EDD domain protein, DegV family
CLAINKJO_01173	2.59e-144	hlyIII	-	-	S	ko:K11068	-	ko00000,ko02042	protein, hemolysin III
CLAINKJO_01174	4.1e-120	folA	1.5.1.3	-	H	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CLAINKJO_01175	5.13e-247	thyA	2.1.1.45	-	F	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CLAINKJO_01176	0.0	yfmR	-	-	S	ko:K15738	-	ko00000,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_01177	2.55e-289	cca	2.7.7.72	-	J	ko:K00974	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
CLAINKJO_01178	1.11e-299	XK27_05225	-	-	S	-	-	-	Tetratricopeptide repeat protein
CLAINKJO_01179	1.6e-54	hup	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
CLAINKJO_01180	9.51e-317	der	-	-	S	ko:K03977	-	ko00000,ko03009	GTPase that plays an essential role in the late steps of ribosome biogenesis
CLAINKJO_01181	1.49e-274	rpsA	-	-	J	ko:K02945	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein S1
CLAINKJO_01182	1.55e-152	cmk	2.7.4.25	-	F	ko:K00945	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the cytidylate kinase family. Type 1 subfamily
CLAINKJO_01183	6.14e-64	-	-	-	M	-	-	-	Lysin motif
CLAINKJO_01184	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
CLAINKJO_01185	3.37e-249	-	-	-	S	-	-	-	Helix-turn-helix domain
CLAINKJO_01186	1.53e-132	ribU	-	-	U	-	-	-	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CLAINKJO_01187	1.23e-163	rluB	5.4.99.22	-	J	ko:K06178	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
CLAINKJO_01188	5.27e-133	scpB	-	-	D	ko:K06024	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CLAINKJO_01189	1.13e-176	scpA	-	-	D	ko:K05896	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CLAINKJO_01190	3.67e-86	ribT	-	-	K	ko:K02859	-	ko00000	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
CLAINKJO_01191	2.45e-213	xerD	-	-	D	ko:K04763	-	ko00000,ko03036	recombinase XerD
CLAINKJO_01192	1.32e-215	yitL	-	-	S	ko:K00243	-	ko00000	S1 domain
CLAINKJO_01193	0.0	pyk	2.7.1.40	-	G	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the pyruvate kinase family
CLAINKJO_01194	0.0	dnaE	2.7.7.7	-	L	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase
CLAINKJO_01195	2.28e-41	-	-	-	S	-	-	-	Protein of unknown function (DUF2929)
CLAINKJO_01196	1.35e-302	pepT	3.4.11.4	-	E	ko:K01258	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
CLAINKJO_01197	2.32e-195	yqfO	-	-	S	-	-	-	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CLAINKJO_01198	1.61e-162	trmK	2.1.1.217	-	S	ko:K06967	-	ko00000,ko01000,ko03016	SAM-dependent methyltransferase
CLAINKJO_01199	2.06e-279	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLAINKJO_01200	5.12e-266	sigA	-	-	K	ko:K03086	-	ko00000,ko03021	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
CLAINKJO_01201	0.0	dnaG	-	-	L	ko:K02316	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
CLAINKJO_01202	0.0	glyS	6.1.1.14	-	J	ko:K01879	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Glycyl-tRNA synthetase beta subunit
CLAINKJO_01203	2.14e-234	glyQ	6.1.1.14	-	J	ko:K01878	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	glycyl-tRNA synthetase alpha subunit
CLAINKJO_01204	2.5e-188	recO	-	-	L	ko:K03584	ko03440,map03440	ko00000,ko00001,ko03400	Involved in DNA repair and RecF pathway recombination
CLAINKJO_01205	1.04e-216	era	-	-	S	ko:K03595	-	ko00000,ko03009,ko03029	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CLAINKJO_01206	8.59e-80	dgkA	2.7.1.107, 2.7.1.66	-	M	ko:K00887,ko:K00901	ko00550,ko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00550,map00561,map00564,map01100,map01110,map04070,map04072,map05231	ko00000,ko00001,ko01000	Diacylglycerol kinase
CLAINKJO_01207	8.64e-107	ybeY	-	-	S	ko:K07042	-	ko00000,ko03009	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CLAINKJO_01208	6.39e-235	phoH	-	-	T	ko:K06217	-	ko00000	phosphate starvation-inducible protein PhoH
CLAINKJO_01209	4.59e-222	birA	6.3.4.15	-	H	ko:K03524	ko00780,ko01100,map00780,map01100	ko00000,ko00001,ko01000,ko03000	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
CLAINKJO_01210	4.19e-120	bioY	-	-	S	ko:K03523	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	BioY family
CLAINKJO_01211	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01212	0.0	argH	4.3.2.1	-	E	ko:K01755	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	argininosuccinate lyase
CLAINKJO_01213	1.7e-302	argG	6.3.4.5	-	E	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the argininosuccinate synthase family. Type 1 subfamily
CLAINKJO_01214	9.15e-239	cbh	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
CLAINKJO_01215	3.33e-92	yqeY	-	-	S	ko:K09117	-	ko00000	YqeY-like protein
CLAINKJO_01216	1e-31	rpsU	-	-	J	ko:K02970	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bS21 family
CLAINKJO_01217	0.0	glnPH2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
CLAINKJO_01218	4.45e-170	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_01219	0.0	aspS	6.1.1.12	-	J	ko:K01876	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
CLAINKJO_01220	8.25e-218	-	-	-	G	-	-	-	Phosphotransferase enzyme family
CLAINKJO_01221	1.54e-100	dtd	-	-	J	ko:K07560	-	ko00000,ko01000,ko03016	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
CLAINKJO_01222	0.0	relA	2.7.6.5	-	KT	ko:K00951	ko00230,map00230	ko00000,ko00001,ko01000	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CLAINKJO_01223	4.8e-72	-	-	-	-	-	-	-	-
CLAINKJO_01224	8.25e-166	rsmE	2.1.1.193	-	J	ko:K09761	-	ko00000,ko01000,ko03009	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
CLAINKJO_01225	3.98e-230	prmA	-	-	J	ko:K02687	-	ko00000,ko01000,ko03009	Ribosomal protein L11 methyltransferase
CLAINKJO_01226	3.36e-77	-	-	-	-	-	-	-	-
CLAINKJO_01227	7.92e-221	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLAINKJO_01229	5.24e-257	-	-	-	C	-	-	-	Belongs to the LDH2 MDH2 oxidoreductase family
CLAINKJO_01230	0.0	pepD3	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLAINKJO_01231	0.0	lepA	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
CLAINKJO_01232	3.26e-92	-	-	-	S	-	-	-	Metallo-beta-lactamase superfamily
CLAINKJO_01233	6.31e-273	dnaJ	-	-	O	ko:K03686	-	ko00000,ko03029,ko03110	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
CLAINKJO_01234	0.0	dnaK	-	-	O	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Heat shock 70 kDa protein
CLAINKJO_01235	1.1e-115	grpE	-	-	O	ko:K03687	-	ko00000,ko03029,ko03110	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CLAINKJO_01236	2.77e-248	hrcA	-	-	K	ko:K03705	-	ko00000,ko03000	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
CLAINKJO_01237	3.09e-85	-	-	-	-	-	-	-	-
CLAINKJO_01238	5.41e-226	ribF	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the ribF family
CLAINKJO_01239	9.98e-215	truB	5.4.99.25	-	J	ko:K03177,ko:K03483	-	ko00000,ko01000,ko03000,ko03016	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CLAINKJO_01240	1.38e-77	rbfA	-	-	J	ko:K02834	-	ko00000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CLAINKJO_01241	0.0	infB	-	-	J	ko:K02519	-	ko00000,ko03012,ko03029	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CLAINKJO_01242	5.61e-65	ylxQ	-	-	J	-	-	-	ribosomal protein
CLAINKJO_01243	5.93e-60	ylxR	-	-	K	ko:K07742	-	ko00000	Protein of unknown function (DUF448)
CLAINKJO_01244	1.01e-275	nusA	-	-	K	ko:K02600	-	ko00000,ko03009,ko03021	Participates in both transcription termination and antitermination
CLAINKJO_01245	1.1e-108	rimP	-	-	J	ko:K09748	-	ko00000,ko03009	Required for maturation of 30S ribosomal subunits
CLAINKJO_01246	0.0	polC	2.7.7.7	-	L	ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLAINKJO_01247	0.0	proS	6.1.1.15	-	J	ko:K01881	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
CLAINKJO_01248	8.1e-299	rseP	-	-	M	ko:K11749	ko02024,ko04112,map02024,map04112	ko00000,ko00001,ko01000,ko01002	zinc metalloprotease
CLAINKJO_01249	2.77e-176	cdsA	2.7.7.41	-	I	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the CDS family
CLAINKJO_01250	7.45e-182	uppS	2.5.1.31	-	H	ko:K00806	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CLAINKJO_01251	8.54e-123	frr	-	-	J	ko:K02838	-	ko00000,ko03012	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
CLAINKJO_01252	8.99e-167	pyrH	2.7.4.22	-	F	ko:K09903	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphorylation of UMP to UDP
CLAINKJO_01253	3.14e-197	tsf	-	-	J	ko:K02357	-	ko00000,ko03012,ko03029	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CLAINKJO_01254	3.54e-184	rpsB	-	-	J	ko:K02967	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS2 family
CLAINKJO_01255	3.56e-234	ldhD	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLAINKJO_01256	6.79e-65	yazA	-	-	L	ko:K07461	-	ko00000	GIY-YIG catalytic domain protein
CLAINKJO_01257	4.85e-181	yabB	2.1.1.223	-	L	ko:K07461,ko:K15460	-	ko00000,ko01000,ko03016	Methyltransferase small domain
CLAINKJO_01258	2.62e-152	plsC	2.3.1.51	-	I	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Acyltransferase
CLAINKJO_01259	1.6e-40	XK26_06720	-	-	S	ko:K09976	-	ko00000	Uncharacterised protein family (UPF0154)
CLAINKJO_01260	3.16e-46	ynzC	-	-	S	-	-	-	UPF0291 protein
CLAINKJO_01261	2.52e-148	lexA	3.4.21.88	-	K	ko:K01356	-	ko00000,ko00002,ko01000,ko01002,ko03400	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CLAINKJO_01262	4.08e-270	mvaS	2.3.3.10	-	I	ko:K01641	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Hydroxymethylglutaryl-CoA synthase
CLAINKJO_01263	2.07e-163	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CLAINKJO_01265	4.04e-100	-	-	-	S	-	-	-	Fic/DOC family
CLAINKJO_01272	1.69e-36	-	-	-	M	-	-	-	Bacteriophage peptidoglycan hydrolase
CLAINKJO_01274	8.28e-221	-	-	-	U	-	-	-	type IV secretory pathway VirB4
CLAINKJO_01277	5.09e-69	-	-	-	-	-	-	-	-
CLAINKJO_01278	1.8e-227	-	-	-	U	ko:K03205	ko03070,map03070	ko00000,ko00001,ko00002,ko02044	TraM recognition site of TraD and TraG
CLAINKJO_01283	3.12e-180	-	-	-	O	ko:K03696	ko01100,map01100	ko00000,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
CLAINKJO_01285	1.98e-161	topA2	5.99.1.2	-	G	ko:K03169	-	ko00000,ko01000,ko03032	Topoisomerase IA
CLAINKJO_01286	2.42e-63	-	-	-	L	-	-	-	Protein of unknown function (DUF3991)
CLAINKJO_01289	2.03e-34	-	-	-	D	-	-	-	Glucan-binding protein C
CLAINKJO_01291	1.05e-33	yoeB	-	-	S	ko:K19158	-	ko00000,ko01000,ko02048	YoeB-like toxin of bacterial type II toxin-antitoxin system
CLAINKJO_01292	1.1e-28	-	-	-	D	ko:K19159	-	ko00000,ko02048	Antitoxin component of a toxin-antitoxin (TA) module
CLAINKJO_01295	4.38e-122	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLAINKJO_01296	6.15e-26	-	-	-	D	-	-	-	nuclear chromosome segregation
CLAINKJO_01300	2.32e-46	lytE	-	-	M	-	-	-	Lysin motif
CLAINKJO_01302	3.27e-68	-	-	-	-	-	-	-	-
CLAINKJO_01304	2.84e-63	-	-	-	L	-	-	-	four-way junction helicase activity
CLAINKJO_01305	3.05e-32	-	-	-	S	-	-	-	YoeB-like toxin of bacterial type II toxin-antitoxin system
CLAINKJO_01306	5.56e-34	-	-	-	D	-	-	-	Antitoxin component of a toxin-antitoxin (TA) module
CLAINKJO_01311	7.36e-21	-	-	-	S	-	-	-	Domain of Unknown Function with PDB structure (DUF3850)
CLAINKJO_01312	8.31e-68	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	sortase family
CLAINKJO_01321	4.9e-05	-	-	-	S	-	-	-	YopX protein
CLAINKJO_01322	6.3e-215	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902 family
CLAINKJO_01337	5.67e-07	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
CLAINKJO_01338	4.35e-08	-	-	-	L	-	-	-	DnaD domain protein
CLAINKJO_01341	7.74e-19	-	-	-	K	-	-	-	Peptidase S24-like
CLAINKJO_01343	4.29e-115	int3	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLAINKJO_01345	1.53e-122	-	-	-	-	-	-	-	-
CLAINKJO_01346	1.25e-119	apt	2.4.2.7	-	F	ko:K00759	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000,ko04147	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CLAINKJO_01347	0.0	recJ	-	-	L	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	ko00000,ko00001,ko01000,ko03400	Single-stranded-DNA-specific exonuclease RecJ
CLAINKJO_01348	1.84e-198	fabG	1.1.1.100	-	S	ko:K00059,ko:K07124	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Belongs to the short-chain dehydrogenases reductases (SDR) family
CLAINKJO_01349	2.29e-224	rnz	3.1.26.11	-	J	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
CLAINKJO_01350	1.9e-316	obg	-	-	S	ko:K03979	-	ko00000,ko01000,ko03009	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CLAINKJO_01351	0.0	uvrC	-	-	L	ko:K03703	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
CLAINKJO_01352	2.44e-20	-	-	-	-	-	-	-	-
CLAINKJO_01353	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01354	1.11e-78	-	-	-	S	-	-	-	mazG nucleotide pyrophosphohydrolase
CLAINKJO_01355	2.01e-139	engB	-	-	D	ko:K03978	-	ko00000,ko03036	Necessary for normal cell division and for the maintenance of normal septation
CLAINKJO_01356	1.19e-296	clpX	-	-	O	ko:K03544	ko04112,map04112	ko00000,ko00001,ko03110	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CLAINKJO_01357	3.2e-302	tig	-	-	D	ko:K03545	-	ko00000	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
CLAINKJO_01358	4.94e-288	tuf	-	-	J	ko:K02358,ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03012,ko03029,ko04147	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CLAINKJO_01359	3.58e-208	-	-	-	S	-	-	-	Tetratricopeptide repeat
CLAINKJO_01360	0.0	rnjB	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLAINKJO_01361	1.74e-57	rpsO	-	-	J	ko:K02956	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CLAINKJO_01362	1.44e-47	rpsT	-	-	J	ko:K02968	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 16S ribosomal RNA
CLAINKJO_01363	0.0	-	-	-	L	-	-	-	Transposase
CLAINKJO_01364	4.36e-198	holA	2.7.7.7	-	L	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III delta subunit
CLAINKJO_01365	0.0	comEC	-	-	S	ko:K02238	-	ko00000,ko00002,ko02044	Competence protein ComEC
CLAINKJO_01366	2.47e-116	comEB	3.5.4.12	-	F	ko:K01493	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko02044	ComE operon protein 2
CLAINKJO_01367	3.26e-136	comEA	-	-	L	ko:K02237	-	ko00000,ko00002,ko02044	Competence protein ComEA
CLAINKJO_01368	2.58e-253	lon	-	-	T	ko:K07177	ko02024,map02024	ko00000,ko00001,ko01002	Belongs to the peptidase S16 family
CLAINKJO_01369	3.05e-116	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CLAINKJO_01370	3.23e-127	rsmD	2.1.1.171	-	L	ko:K08316	-	ko00000,ko01000,ko03009	RNA methyltransferase, RsmD family
CLAINKJO_01371	6.37e-60	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2129)
CLAINKJO_01372	8.8e-283	ftsW	-	-	D	ko:K03588	ko04112,map04112	ko00000,ko00001,ko02000,ko03036	Belongs to the SEDS family
CLAINKJO_01373	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01374	0.0	typA	-	-	T	ko:K06207	-	ko00000	GTP-binding protein TypA
CLAINKJO_01375	1.43e-176	suhB	3.1.3.25	-	G	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the inositol monophosphatase superfamily
CLAINKJO_01376	7.04e-63	yktA	-	-	S	-	-	-	Belongs to the UPF0223 family
CLAINKJO_01377	0.0	pdhD	1.8.1.4	-	C	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	Dehydrogenase
CLAINKJO_01378	9.05e-313	pdhC	2.3.1.12	-	C	ko:K00627	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
CLAINKJO_01379	3.28e-232	pdhB	1.2.4.1	-	C	ko:K00162	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	br01601,ko00000,ko00001,ko00002,ko01000	Transketolase, C-terminal domain protein
CLAINKJO_01380	3.33e-265	pdhA	1.2.4.1	-	C	ko:K00161	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	br01601,ko00000,ko00001,ko00002,ko01000	Dehydrogenase E1 component
CLAINKJO_01381	1.68e-133	def	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
CLAINKJO_01382	4.64e-106	-	-	-	-	-	-	-	-
CLAINKJO_01383	9.99e-44	ykzG	-	-	S	-	-	-	Belongs to the UPF0356 family
CLAINKJO_01384	1.51e-232	-	-	-	I	-	-	-	Diacylglycerol kinase catalytic
CLAINKJO_01385	4.37e-39	-	-	-	-	-	-	-	-
CLAINKJO_01386	2.03e-233	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC P60 family protein
CLAINKJO_01388	8.76e-75	-	-	-	-	-	-	-	-
CLAINKJO_01389	7.6e-153	glxK	2.7.1.165	-	G	ko:K00865	ko00260,ko00561,ko00630,ko01100,ko01120,ko01130,map00260,map00561,map00630,map01100,map01120,map01130	ko00000,ko00001,ko01000	Belongs to the glycerate kinase type-1 family
CLAINKJO_01390	2.32e-81	glxK	2.7.1.165	-	G	ko:K00865	ko00260,ko00561,ko00630,ko01100,ko01120,ko01130,map00260,map00561,map00630,map01100,map01120,map01130	ko00000,ko00001,ko01000	Belongs to the glycerate kinase type-1 family
CLAINKJO_01391	3.67e-254	asd	1.2.1.11	-	E	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CLAINKJO_01392	1.89e-275	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLAINKJO_01393	5.21e-180	dapB	1.17.1.8	-	E	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
CLAINKJO_01394	4.43e-221	dapA	4.3.3.7	-	E	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLAINKJO_01395	5.47e-282	hipO	3.5.1.47	-	E	ko:K05823	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
CLAINKJO_01396	1.26e-109	dapH	2.3.1.117, 2.3.1.89	-	E	ko:K00674,ko:K05822	ko00300,ko01100,ko01110,ko01120,ko01230,map00300,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
CLAINKJO_01397	1.72e-315	lysA	4.1.1.20	-	E	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
CLAINKJO_01398	0.0	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
CLAINKJO_01399	1.1e-234	dapF	5.1.1.7	-	E	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CLAINKJO_01400	0.0	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
CLAINKJO_01401	1.48e-223	prs2	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CLAINKJO_01402	0.0	recD2	3.1.11.5	-	L	ko:K03581	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
CLAINKJO_01403	3.82e-157	-	-	-	S	-	-	-	repeat protein
CLAINKJO_01404	1.64e-158	pgm6	-	-	G	-	-	-	phosphoglycerate mutase
CLAINKJO_01405	1.53e-276	mnmA	2.8.1.13	-	J	ko:K00566	ko04122,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
CLAINKJO_01406	2.27e-75	XK27_04120	-	-	S	-	-	-	Putative amino acid metabolism
CLAINKJO_01407	4.48e-278	iscS	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
CLAINKJO_01408	5.64e-161	mtnN	3.2.2.9	-	E	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CLAINKJO_01409	2.98e-31	-	-	-	-	-	-	-	-
CLAINKJO_01410	1.44e-128	nudF	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	ADP-ribose pyrophosphatase
CLAINKJO_01411	5.69e-44	cspB	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock protein
CLAINKJO_01412	0.0	ileS	6.1.1.5	-	J	ko:K01870	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CLAINKJO_01413	3.28e-103	divIVA	-	-	D	ko:K04074	-	ko00000,ko03036	DivIVA domain protein
CLAINKJO_01414	1.84e-190	ylmH	-	-	S	-	-	-	S4 domain protein
CLAINKJO_01415	3.2e-54	ylmG	-	-	S	ko:K02221	-	ko00000,ko02044	YGGT family
CLAINKJO_01416	1.11e-92	sepF	-	-	D	ko:K09772	-	ko00000,ko03036	Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
CLAINKJO_01417	8.87e-287	ftsZ	-	-	D	ko:K03531	ko04112,map04112	ko00000,ko00001,ko02048,ko03036,ko04812	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CLAINKJO_01418	0.0	ftsA	-	-	D	ko:K03590	ko04112,map04112	ko00000,ko00001,ko03036,ko04812	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
CLAINKJO_01419	1.16e-183	divIB	-	-	D	ko:K03589	ko04112,map04112	ko00000,ko00001,ko03036	Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
CLAINKJO_01420	9.81e-259	murG	2.4.1.227	GT28	M	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CLAINKJO_01421	0.0	murD	6.3.2.9	-	M	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CLAINKJO_01422	3.83e-230	mraY	2.7.8.13	-	M	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CLAINKJO_01423	0.0	pbpX	-	-	M	ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
CLAINKJO_01424	5.99e-74	ftsL	-	-	D	-	-	-	Cell division protein FtsL
CLAINKJO_01425	2.29e-224	rsmH	2.1.1.199	-	J	ko:K03438	-	ko00000,ko01000,ko03009	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
CLAINKJO_01426	3.53e-100	mraZ	-	-	K	ko:K03925	-	ko00000	Belongs to the MraZ family
CLAINKJO_01427	2.32e-75	-	-	-	-	-	-	-	-
CLAINKJO_01428	4.47e-16	-	-	-	S	-	-	-	Protein of unknown function (DUF4044)
CLAINKJO_01429	0.0	ftsK	-	-	D	ko:K03466	-	ko00000,ko03036	Belongs to the FtsK SpoIIIE SftA family
CLAINKJO_01430	3.75e-124	cspR	2.1.1.207	-	J	ko:K03216	-	ko00000,ko01000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
CLAINKJO_01431	1.21e-207	rrmA	2.1.1.187	-	H	ko:K00563,ko:K10947	-	ko00000,ko01000,ko03000,ko03009	Methyltransferase
CLAINKJO_01432	3.8e-251	pgl	3.1.1.31	-	G	ko:K07404	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Lactonase, 7-bladed beta-propeller
CLAINKJO_01434	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_01435	3.81e-88	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_01439	7.96e-221	yjbO	5.4.99.23	-	G	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
CLAINKJO_01440	1.25e-197	nadK	2.7.1.23	-	F	ko:K00858	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CLAINKJO_01441	1.29e-150	yjbM	2.7.6.5	-	S	ko:K07816	ko00230,map00230	ko00000,ko00001,ko01000	RelA SpoT domain protein
CLAINKJO_01442	1.63e-146	yjbH	-	-	Q	-	-	-	Thioredoxin
CLAINKJO_01443	0.0	pepDA	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLAINKJO_01444	2.6e-259	coiA	-	-	S	ko:K06198	-	ko00000	Competence protein
CLAINKJO_01445	5.67e-157	mecA	-	-	NOT	ko:K16511	-	ko00000	Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
CLAINKJO_01446	4.08e-88	spxA	-	-	K	ko:K16509	-	ko00000	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
CLAINKJO_01447	1.31e-103	traP	1.14.99.57	-	S	ko:K21481	-	ko00000,ko01000	enzyme involved in biosynthesis of extracellular polysaccharides
CLAINKJO_01448	3.68e-107	isp	-	-	L	-	-	-	Transposase
CLAINKJO_01449	2.28e-123	-	-	-	L	-	-	-	Transposase
CLAINKJO_01451	3.81e-88	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_01452	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_01453	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLAINKJO_01454	2.8e-81	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLAINKJO_01477	1.83e-149	dedA	-	-	S	ko:K03975	-	ko00000	SNARE-like domain protein
CLAINKJO_01478	4.18e-131	-	-	-	S	-	-	-	Protein of unknown function (DUF1461)
CLAINKJO_01479	9.6e-170	nagD	3.1.3.41	-	G	ko:K01101	ko00627,ko01120,map00627,map01120	ko00000,ko00001,ko01000	Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
CLAINKJO_01480	2.66e-120	yutD	-	-	S	-	-	-	Protein of unknown function (DUF1027)
CLAINKJO_01481	1.21e-143	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
CLAINKJO_01482	3.07e-283	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CLAINKJO_01483	5.09e-186	ytxK	2.1.1.72	-	L	ko:K00571	-	ko00000,ko01000,ko02048	N-6 DNA Methylase
CLAINKJO_01485	1.88e-91	-	-	-	-	ko:K02248	-	ko00000,ko00002,ko02044	-
CLAINKJO_01486	2.38e-56	-	-	-	-	-	-	-	-
CLAINKJO_01487	1.43e-100	-	-	-	NU	ko:K02246	-	ko00000,ko00002,ko02044	general secretion pathway protein
CLAINKJO_01488	2.3e-51	comGC	-	-	U	ko:K02245	-	ko00000,ko00002,ko02044	competence protein ComGC
CLAINKJO_01490	2.94e-181	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
CLAINKJO_01491	1.08e-42	-	-	-	S	-	-	-	Bacteriophage holin of superfamily 6 (Holin_LLH)
CLAINKJO_01492	6.17e-49	-	-	-	S	-	-	-	Bacteriophage holin family
CLAINKJO_01496	0.0	-	-	-	LM	-	-	-	gp58-like protein
CLAINKJO_01497	1.5e-76	-	-	-	-	-	-	-	-
CLAINKJO_01498	0.0	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
CLAINKJO_01499	3.23e-50	-	-	-	-	-	-	-	-
CLAINKJO_01500	5.07e-79	-	-	-	-	-	-	-	-
CLAINKJO_01501	9.36e-94	-	-	-	S	-	-	-	Phage tail tube protein, TTP
CLAINKJO_01502	1.04e-69	-	-	-	-	-	-	-	-
CLAINKJO_01503	1.49e-100	-	-	-	-	-	-	-	-
CLAINKJO_01504	1.45e-69	-	-	-	-	-	-	-	-
CLAINKJO_01505	6.92e-48	-	-	-	-	-	-	-	-
CLAINKJO_01506	7.22e-223	-	-	-	S	-	-	-	Phage major capsid protein E
CLAINKJO_01507	3.79e-70	-	-	-	-	-	-	-	-
CLAINKJO_01508	2.61e-97	-	-	-	S	-	-	-	Domain of unknown function (DUF4355)
CLAINKJO_01509	6.39e-188	-	-	-	S	-	-	-	Phage Mu protein F like protein
CLAINKJO_01510	8.75e-297	-	-	-	S	-	-	-	Phage portal protein, SPP1 Gp6-like
CLAINKJO_01511	1.29e-279	-	-	-	S	-	-	-	Terminase-like family
CLAINKJO_01512	1.3e-156	xtmA	-	-	L	ko:K07474	-	ko00000	Terminase small subunit
CLAINKJO_01513	2.3e-78	-	-	-	S	-	-	-	HicB_like antitoxin of bacterial toxin-antitoxin system
CLAINKJO_01514	1.71e-26	-	-	-	S	-	-	-	Type I restriction modification DNA specificity domain
CLAINKJO_01515	5.06e-08	-	-	-	S	-	-	-	Type I restriction modification DNA specificity domain
CLAINKJO_01516	1.02e-179	-	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	type I restriction-modification system
CLAINKJO_01517	1.68e-107	-	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	site-specific DNA-methyltransferase (adenine-specific) activity
CLAINKJO_01518	1.19e-83	-	-	-	L	-	-	-	DNA methylase
CLAINKJO_01524	1.06e-50	-	-	-	S	-	-	-	Protein of unknown function (DUF1064)
CLAINKJO_01526	5e-26	-	-	-	-	-	-	-	-
CLAINKJO_01527	4.47e-21	-	-	-	-	-	-	-	-
CLAINKJO_01531	6.65e-34	-	-	-	-	-	-	-	-
CLAINKJO_01534	3.91e-71	-	-	-	L	ko:K02315	-	ko00000,ko03032	IstB-like ATP binding protein
CLAINKJO_01535	3.79e-75	-	-	-	L	-	-	-	DnaD domain protein
CLAINKJO_01536	1.07e-79	-	-	-	S	-	-	-	Putative HNHc nuclease
CLAINKJO_01537	4.09e-110	-	-	-	S	-	-	-	Protein of unknown function (DUF669)
CLAINKJO_01538	1.33e-157	-	-	-	S	-	-	-	AAA domain
CLAINKJO_01539	1e-79	-	-	-	S	-	-	-	Bacteriophage Mu Gam like protein
CLAINKJO_01540	2.61e-19	-	-	-	S	ko:K09946	-	ko00000	Domain of unknown function (DUF1508)
CLAINKJO_01544	3.47e-84	-	-	-	S	-	-	-	DNA binding
CLAINKJO_01545	0.000496	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLAINKJO_01546	7.91e-48	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLAINKJO_01547	2.39e-55	-	-	-	E	-	-	-	Zn peptidase
CLAINKJO_01548	7.31e-25	-	-	-	-	-	-	-	-
CLAINKJO_01549	3.55e-51	-	-	-	-	-	-	-	-
CLAINKJO_01550	3.55e-113	-	-	-	S	-	-	-	Protein of unknown function (DUF3644)
CLAINKJO_01553	3.98e-156	int	-	-	L	ko:K06400	-	ko00000	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CLAINKJO_01554	1.34e-236	comGB	-	-	NU	ko:K02244	-	ko00000,ko00002,ko02044	type II secretion system
CLAINKJO_01555	3.57e-236	comGA	-	-	NU	ko:K02243	-	ko00000,ko00002,ko02044	Type II IV secretion system protein
CLAINKJO_01556	1.22e-168	yebC	-	-	K	-	-	-	Transcriptional regulatory protein
CLAINKJO_01557	3.24e-170	-	-	-	-	-	-	-	-
CLAINKJO_01558	1.9e-232	ccpA	-	-	K	ko:K02529	-	ko00000,ko03000	catabolite control protein A
CLAINKJO_01559	4.4e-269	pepQ	3.4.13.9	-	E	ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
CLAINKJO_01560	1.84e-75	-	-	-	-	-	-	-	-
CLAINKJO_01561	1.54e-71	ytxG	-	-	S	-	-	-	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
CLAINKJO_01562	5.34e-189	ykuT	-	-	M	ko:K16052,ko:K22044	-	ko00000,ko02000	mechanosensitive ion channel
CLAINKJO_01563	1.1e-195	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
CLAINKJO_01564	8.21e-97	ykuL	-	-	S	-	-	-	(CBS) domain
CLAINKJO_01565	6.71e-120	-	-	-	S	ko:K07095	-	ko00000	Phosphoesterase
CLAINKJO_01566	6e-136	rdgB	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CLAINKJO_01567	2.37e-180	murI	3.6.1.66, 5.1.1.3	-	M	ko:K01776,ko:K02428	ko00230,ko00471,ko01100,map00230,map00471,map01100	ko00000,ko00001,ko01000,ko01011	Provides the (R)-glutamate required for cell wall biosynthesis
CLAINKJO_01568	1.22e-125	yslB	-	-	S	-	-	-	Protein of unknown function (DUF2507)
CLAINKJO_01569	9.61e-71	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
CLAINKJO_01570	0.0	mutS2	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
CLAINKJO_01571	4.14e-121	cvpA	-	-	S	-	-	-	Colicin V production protein
CLAINKJO_01572	3.75e-63	yrzB	-	-	S	-	-	-	Belongs to the UPF0473 family
CLAINKJO_01573	3.62e-100	yrrK	-	-	J	ko:K07447	-	ko00000,ko01000	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CLAINKJO_01574	8.03e-58	yrzL	-	-	S	-	-	-	Belongs to the UPF0297 family
CLAINKJO_01575	0.0	alaS	6.1.1.7	-	J	ko:K01872	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CLAINKJO_01576	0.0	cshB	3.6.4.13	-	JKL	ko:K05592,ko:K18692	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
CLAINKJO_01577	2.15e-234	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHHA1 domain protein
CLAINKJO_01578	6.13e-61	yajC	-	-	U	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
CLAINKJO_01579	3.9e-245	tgt	2.4.2.29	-	F	ko:K00773	-	ko00000,ko01000,ko03016	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
CLAINKJO_01580	1.16e-243	ruvB	3.6.4.12	-	L	ko:K03551	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
CLAINKJO_01581	3.72e-132	ruvA	3.6.4.12	-	L	ko:K03550	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
CLAINKJO_01582	0.0	mutL	-	-	L	ko:K03572	ko03430,map03430	ko00000,ko00001,ko03400	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CLAINKJO_01583	0.0	mutS	-	-	L	ko:K03555	ko03430,map03430	ko00000,ko00001,ko03400	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CLAINKJO_01584	2.29e-276	rny	-	-	S	ko:K18682	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Endoribonuclease that initiates mRNA decay
CLAINKJO_01585	7.67e-252	recA	-	-	L	ko:K03553	ko03440,map03440	ko00000,ko00001,ko00002,ko03400	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CLAINKJO_01586	1.54e-287	cinA	3.5.1.42	-	S	ko:K03742,ko:K03743	ko00760,map00760	ko00000,ko00001,ko01000	Belongs to the CinA family
CLAINKJO_01587	1.16e-133	pgsA	2.7.8.5	-	I	ko:K00995	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CLAINKJO_01588	1.97e-195	-	-	-	S	-	-	-	Helix-turn-helix domain
CLAINKJO_01589	1.83e-315	ymfH	-	-	S	-	-	-	Peptidase M16
CLAINKJO_01590	1.43e-292	ymfF	-	-	S	-	-	-	Peptidase M16 inactive domain protein
CLAINKJO_01591	4.04e-205	aatB	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein
CLAINKJO_01592	2.06e-151	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_01593	3.13e-141	yecS_2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
CLAINKJO_01594	1.69e-120	mreD	-	-	M	ko:K03571	-	ko00000,ko03036	rod shape-determining protein MreD
CLAINKJO_01595	3.67e-193	mreC	-	-	M	ko:K03570	-	ko00000,ko03036	Involved in formation and maintenance of cell shape
CLAINKJO_01596	8.33e-230	mreB	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	cell shape determining protein MreB
CLAINKJO_01597	8.48e-157	radC	-	-	L	ko:K03630	-	ko00000	DNA repair protein
CLAINKJO_01598	4.6e-307	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
CLAINKJO_01599	6.33e-295	yumB	1.6.99.3	-	C	ko:K03885	ko00190,map00190	ko00000,ko00001,ko01000	NADH dehydrogenase
CLAINKJO_01600	0.0	cydD	-	-	CO	ko:K16012	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CLAINKJO_01601	0.0	cydC	-	-	CO	ko:K16013	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydD
CLAINKJO_01602	1.15e-234	cydB	1.10.3.14	-	C	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	Cytochrome d ubiquinol oxidase subunit II
CLAINKJO_01603	0.0	cydA	1.10.3.14	-	C	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	ubiquinol oxidase
CLAINKJO_01604	0.0	valS	6.1.1.9	-	J	ko:K01873	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
CLAINKJO_01605	5.83e-292	thiI	2.8.1.4	-	H	ko:K03151	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CLAINKJO_01606	1.74e-274	iscS2	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
CLAINKJO_01607	0.0	ezrA	-	-	D	ko:K06286	-	ko00000,ko03036	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
CLAINKJO_01608	5.96e-139	rpsD	-	-	J	ko:K02986	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CLAINKJO_01609	7.52e-299	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
CLAINKJO_01610	0.0	frc	2.8.3.16	-	C	ko:K07749	-	ko00000,ko01000	Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate
CLAINKJO_01611	0.0	spxB	1.2.3.3, 1.2.5.1, 2.2.1.6, 4.1.1.8	-	EH	ko:K00156,ko:K00158,ko:K01577,ko:K01652	ko00290,ko00620,ko00630,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00620,map00630,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TPP enzyme family
CLAINKJO_01612	9.4e-178	-	-	-	S	ko:K09861	-	ko00000	Belongs to the UPF0246 family
CLAINKJO_01613	4.16e-180	-	-	-	S	-	-	-	Membrane
CLAINKJO_01614	2e-98	-	4.4.1.5	-	E	ko:K01759	ko00620,map00620	ko00000,ko00001,ko01000	Glyoxalase
CLAINKJO_01615	9.79e-29	-	-	-	-	-	-	-	-
CLAINKJO_01616	4.1e-111	XK27_05190	-	-	S	-	-	-	Protein of unknown function (DUF1694)
CLAINKJO_01617	6.57e-310	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
CLAINKJO_01618	3.61e-61	-	-	-	-	-	-	-	-
CLAINKJO_01619	5.59e-109	uspA	-	-	T	-	-	-	universal stress protein
CLAINKJO_01620	6.93e-261	araR	-	-	K	ko:K02103	-	ko00000,ko03000	Transcriptional regulator
CLAINKJO_01621	2.32e-198	yvgN	-	-	S	-	-	-	Aldo keto reductase
CLAINKJO_01622	2.11e-133	maa	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose O-acetyltransferase
CLAINKJO_01623	0.0	araA	5.3.1.4	-	G	ko:K01804	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of L-arabinose to L-ribulose
CLAINKJO_01624	2.32e-179	araD	5.1.3.4	-	G	ko:K03077	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
CLAINKJO_01625	0.0	araB	2.7.1.16	-	G	ko:K00853	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko01000	carbohydrate kinase FGGY
CLAINKJO_01626	0.0	araP	-	-	U	-	-	-	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
CLAINKJO_01627	1.82e-191	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLAINKJO_01628	1.81e-274	ddl	6.3.2.4	-	F	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Belongs to the D-alanine--D-alanine ligase family
CLAINKJO_01629	8.55e-64	gcsH2	-	-	E	ko:K02437	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	ko00000,ko00001,ko00002	glycine cleavage
CLAINKJO_01630	9.49e-282	rodA	-	-	D	ko:K05837	-	ko00000,ko03036	Belongs to the SEDS family
CLAINKJO_01631	4.61e-44	-	-	-	S	-	-	-	Protein of unknown function (DUF2969)
CLAINKJO_01632	2.57e-227	mbl	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	Cell shape determining protein MreB Mrl
CLAINKJO_01633	1.05e-308	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CLAINKJO_01634	1.76e-45	ywzB	-	-	S	-	-	-	Protein of unknown function (DUF1146)
CLAINKJO_01635	0.0	-	-	-	L	-	-	-	Transposase
CLAINKJO_01636	7.36e-89	atpC	-	-	C	ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane
CLAINKJO_01637	0.0	atpD	3.6.3.14	-	C	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CLAINKJO_01638	1.3e-212	atpG	-	-	C	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CLAINKJO_01639	0.0	atpA	3.6.3.14	-	C	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CLAINKJO_01640	6.84e-121	atpH	-	-	C	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CLAINKJO_01641	1.07e-95	atpF	-	-	C	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CLAINKJO_01642	1.26e-29	atpE	-	-	C	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CLAINKJO_01643	5.4e-161	atpB	-	-	C	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko03110	it plays a direct role in the translocation of protons across the membrane
CLAINKJO_01644	9.76e-295	pyrP	-	-	F	ko:K02824	-	ko00000,ko02000	Permease
CLAINKJO_01645	6.99e-168	yibF	-	-	S	-	-	-	overlaps another CDS with the same product name
CLAINKJO_01646	5.51e-245	yibE	-	-	S	-	-	-	overlaps another CDS with the same product name
CLAINKJO_01647	0.0	ptsI	2.7.3.9	-	G	ko:K08483	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLAINKJO_01648	6.68e-150	upp	2.4.2.9	-	F	ko:K00761	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CLAINKJO_01649	9e-294	glyA	2.1.2.1	-	E	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CLAINKJO_01650	2.67e-251	ywlC	2.7.7.87	-	J	ko:K07566	-	ko00000,ko01000,ko03009,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
CLAINKJO_01651	1.17e-211	prmC	2.1.1.297	-	J	ko:K02493	-	ko00000,ko01000,ko03012	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
CLAINKJO_01652	1.73e-248	prfA	-	-	J	ko:K02835	-	ko00000,ko03012	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CLAINKJO_01653	6.8e-140	tdk	2.7.1.21	-	F	ko:K00857	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	thymidine kinase
CLAINKJO_01654	0.0	murE2	6.3.2.13	-	M	ko:K01928	ko00300,ko00550,map00300,map00550	ko00000,ko00001,ko01000,ko01011	Mur ligase, middle domain
CLAINKJO_01655	2.41e-173	-	-	-	S	ko:K07009	-	ko00000	CobB/CobQ-like glutamine amidotransferase domain
CLAINKJO_01657	1.61e-296	potE	-	-	U	ko:K03756,ko:K03758	-	ko00000,ko02000	Amino acid permease
CLAINKJO_01658	0.0	arcD	-	-	E	ko:K03758	-	ko00000,ko02000	Arginine ornithine antiporter
CLAINKJO_01659	6.17e-104	argR	-	-	K	ko:K03402	-	ko00000,ko03000	Regulates arginine biosynthesis genes
CLAINKJO_01660	2.07e-303	arcA	3.5.3.6	-	E	ko:K01478	ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130	ko00000,ko00001,ko01000	Arginine
CLAINKJO_01661	7.8e-238	ampC	-	-	V	-	-	-	Beta-lactamase
CLAINKJO_01662	3.85e-73	-	-	-	-	-	-	-	-
CLAINKJO_01663	0.0	-	-	-	M	-	-	-	domain protein
CLAINKJO_01664	7.8e-136	-	-	-	-	-	-	-	-
CLAINKJO_01665	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01666	2.03e-168	int2	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLAINKJO_01667	0.000219	-	-	-	K	-	-	-	Helix-turn-helix
CLAINKJO_01668	1.4e-28	-	-	-	S	-	-	-	Helix-turn-helix domain
CLAINKJO_01673	2.57e-57	-	-	-	-	-	-	-	-
CLAINKJO_01674	4.82e-130	-	-	-	S	ko:K06919	-	ko00000	D5 N terminal like
CLAINKJO_01683	1.28e-75	-	-	-	-	-	-	-	-
CLAINKJO_01685	5.22e-112	-	-	-	-	-	-	-	-
CLAINKJO_01686	0.0	copA	3.6.3.3, 3.6.3.5, 3.6.3.54	-	P	ko:K01534,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	P-type ATPase
CLAINKJO_01687	8.97e-65	-	-	-	S	-	-	-	Cupredoxin-like domain
CLAINKJO_01688	5.13e-70	-	-	-	S	-	-	-	Cupredoxin-like domain
CLAINKJO_01689	2.01e-133	XK27_08875	-	-	O	-	-	-	PFAM peptidase M10A and M12B, matrixin and adamalysin
CLAINKJO_01690	6.42e-208	-	-	-	EG	-	-	-	EamA-like transporter family
CLAINKJO_01691	4.6e-220	arcC	2.7.2.2	-	E	ko:K00926	ko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200	ko00000,ko00001,ko01000	Belongs to the carbamate kinase family
CLAINKJO_01692	9.21e-244	argF	2.1.3.3	-	E	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CLAINKJO_01693	1.51e-198	-	-	-	KT	ko:K07719	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	YcbB domain
CLAINKJO_01694	6.11e-44	xylB	2.7.1.17, 2.7.1.53	-	G	ko:K00854,ko:K00880	ko00040,ko00053,ko01100,map00040,map00053,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the FGGY kinase family
CLAINKJO_01696	1.83e-34	-	-	-	-	-	-	-	-
CLAINKJO_01697	0.0	pgi	5.3.1.9	-	G	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the GPI family
CLAINKJO_01698	6.73e-151	maa3	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
CLAINKJO_01699	9.07e-199	-	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
CLAINKJO_01700	0.0	yclK	-	-	T	-	-	-	Histidine kinase
CLAINKJO_01701	2.81e-174	yclJ	-	-	K	ko:K02483	-	ko00000,ko02022	response regulator
CLAINKJO_01703	1.27e-109	lytE	-	-	M	-	-	-	Lysin motif
CLAINKJO_01704	6.37e-190	-	-	-	S	-	-	-	Cof-like hydrolase
CLAINKJO_01705	6.2e-103	-	-	-	K	-	-	-	Transcriptional regulator
CLAINKJO_01706	0.0	oatA	-	-	I	-	-	-	Acyltransferase
CLAINKJO_01707	1.22e-68	-	-	-	-	-	-	-	-
CLAINKJO_01708	0.0	glmS	2.6.1.16	-	M	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	ko00000,ko00001,ko01000,ko01002	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
CLAINKJO_01709	0.0	glmM	5.4.2.10	-	G	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko01000	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CLAINKJO_01710	3.69e-163	ybbR	-	-	S	-	-	-	YbbR-like protein
CLAINKJO_01711	6.61e-195	dacA	2.7.7.85	-	S	ko:K18672	-	ko00000,ko01000	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CLAINKJO_01712	0.0	fucP	-	-	G	ko:K02429	-	ko00000,ko02000	Major Facilitator Superfamily
CLAINKJO_01713	2.03e-87	rbsD	5.4.99.62	-	G	ko:K06726	ko02010,map02010	ko00000,ko00001,ko01000	Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose
CLAINKJO_01714	1.31e-213	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLAINKJO_01715	2.76e-215	murB	1.3.1.98	-	M	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation
CLAINKJO_01716	1.24e-131	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
CLAINKJO_01717	4.85e-97	XK27_04775	-	-	S	ko:K09155	-	ko00000	PAS domain
CLAINKJO_01718	2.63e-115	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLAINKJO_01719	1.2e-105	ydiB	-	-	O	ko:K06925	-	ko00000,ko03016	Hydrolase, P-loop family
CLAINKJO_01720	1.97e-228	pta	2.3.1.8, 3.6.3.21	-	C	ko:K00625,ko:K02028	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000,ko02000	phosphate acetyltransferase
CLAINKJO_01721	7.51e-174	ung	3.2.2.27	-	L	ko:K03648	ko03410,ko05340,map03410,map05340	ko00000,ko00001,ko01000,ko03400	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CLAINKJO_01722	9.61e-137	-	-	-	-	-	-	-	-
CLAINKJO_01723	9.03e-108	smpB	-	-	J	ko:K03664	-	ko00000	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
CLAINKJO_01724	0.0	rnr	-	-	J	ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko03016,ko03019	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
CLAINKJO_01725	1.49e-171	est	3.1.1.1	-	S	ko:K03928	-	ko00000,ko01000	Serine aminopeptidase, S33
CLAINKJO_01726	1.43e-47	secG	-	-	U	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
CLAINKJO_01727	0.0	eriC	-	-	P	ko:K03281	-	ko00000	chloride
CLAINKJO_01728	0.0	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
CLAINKJO_01729	0.0	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
CLAINKJO_01730	2.4e-180	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
CLAINKJO_01731	4.41e-289	pgk	2.7.2.3	-	F	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the phosphoglycerate kinase family
CLAINKJO_01732	1.31e-243	gap	1.2.1.12	-	G	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
CLAINKJO_01734	4.72e-134	clpP	3.4.21.92	-	O	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
CLAINKJO_01735	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01736	2.04e-263	glpT	-	-	G	ko:K02445	-	ko00000,ko02000	Major Facilitator Superfamily
CLAINKJO_01737	1.83e-21	-	-	-	-	-	-	-	-
CLAINKJO_01739	1.37e-218	whiA	-	-	K	ko:K09762	-	ko00000	May be required for sporulation
CLAINKJO_01740	6.97e-240	yvcK	-	-	S	-	-	-	Required for morphogenesis under gluconeogenic growth conditions
CLAINKJO_01741	2.69e-206	yvcJ	-	-	S	ko:K06958	-	ko00000,ko03019	Displays ATPase and GTPase activities
CLAINKJO_01742	9.18e-317	steT	-	-	E	ko:K03294	-	ko00000	amino acid
CLAINKJO_01743	0.0	uvrA	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
CLAINKJO_01744	0.0	uvrB	-	-	L	ko:K03702	ko03420,map03420	ko00000,ko00001,ko03400	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
CLAINKJO_01745	1.03e-19	-	-	-	-	-	-	-	-
CLAINKJO_01746	4.17e-149	yfbR	-	-	S	ko:K07023	-	ko00000	HD containing hydrolase-like enzyme
CLAINKJO_01747	0.0	pgm	5.4.2.2	-	G	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
CLAINKJO_01748	9.93e-115	ykhA	3.1.2.20	-	I	ko:K01073	-	ko00000,ko01000	Thioesterase superfamily
CLAINKJO_01749	2.83e-206	-	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	PFAM extracellular solute-binding protein, family 3
CLAINKJO_01750	1.75e-257	-	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
CLAINKJO_01751	3.94e-221	trxB	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
CLAINKJO_01752	2.76e-215	lutA	-	-	C	ko:K18928	-	ko00000	Cysteine-rich domain
CLAINKJO_01753	0.0	lutB	-	-	C	ko:K18929	-	ko00000	4Fe-4S dicluster domain
CLAINKJO_01754	4.49e-178	lutC	-	-	S	ko:K00782	-	ko00000	LUD domain
CLAINKJO_01755	4.4e-215	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
CLAINKJO_01756	2.31e-234	gpsA	1.1.1.94	-	I	ko:K00057	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	Glycerol-3-phosphate dehydrogenase
CLAINKJO_01757	1.41e-201	lgt	-	-	M	ko:K13292	-	ko00000,ko01000	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CLAINKJO_01758	1.38e-226	hprK	-	-	F	ko:K06023	-	ko00000,ko01000	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CLAINKJO_01759	1.88e-68	yvlD	-	-	S	ko:K08972	-	ko00000	Mycobacterial 4 TMS phage holin, superfamily IV
CLAINKJO_01760	2.11e-66	-	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	PspC domain protein
CLAINKJO_01761	3.72e-237	prfB	-	-	J	ko:K02836	-	ko00000,ko03012	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CLAINKJO_01762	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
CLAINKJO_01763	3.01e-125	hpf	-	-	J	ko:K05808	-	ko00000,ko03009	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CLAINKJO_01764	1.38e-154	comFC	-	-	S	ko:K02242	-	ko00000,ko00002,ko02044	Competence protein
CLAINKJO_01765	6.19e-315	comFA	-	-	L	ko:K02240	-	ko00000,ko00002,ko02044	Helicase C-terminal domain protein
CLAINKJO_01766	3.16e-143	yvyE	3.4.13.9	-	S	ko:K01271	-	ko00000,ko01000,ko01002	YigZ family
CLAINKJO_01767	5.55e-47	-	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_01768	5.92e-199	-	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_01769	3.74e-88	-	-	-	K	-	-	-	Transcriptional regulator
CLAINKJO_01770	1.53e-52	-	-	-	-	-	-	-	-
CLAINKJO_01771	0.0	ydaO	-	-	E	-	-	-	amino acid
CLAINKJO_01772	0.0	-	-	-	E	-	-	-	amino acid
CLAINKJO_01773	1.89e-79	-	-	-	S	ko:K19055	-	ko00000,ko01000,ko03016	Aminoacyl-tRNA editing domain
CLAINKJO_01774	0.0	groL	-	-	O	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
CLAINKJO_01775	1.83e-59	groS	-	-	O	ko:K04078	-	ko00000,ko03029,ko03110	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CLAINKJO_01776	7.74e-146	rex	-	-	K	ko:K01926	-	ko00000,ko03000	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
CLAINKJO_01777	0.0	ydiF	-	-	S	ko:K06158	-	ko00000,ko03012	ABC transporter, ATP-binding protein
CLAINKJO_01778	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01779	1.02e-233	ykpB	1.1.1.169	-	H	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLAINKJO_01780	1.53e-289	mtnE	-	-	E	ko:K08969	ko00270,ko01100,map00270,map01100	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLAINKJO_01781	6.34e-182	mtnU	3.5.1.3	-	S	ko:K13566	ko00250,map00250	ko00000,ko00001,ko01000	Carbon-nitrogen hydrolase
CLAINKJO_01782	2.56e-177	proB	2.7.2.11	-	F	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CLAINKJO_01783	8.57e-289	proA	1.2.1.41	-	E	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CLAINKJO_01784	4.4e-171	proC	1.5.1.2	-	E	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CLAINKJO_01785	8.28e-251	tsaD	2.3.1.234	-	J	ko:K01409	-	ko00000,ko01000,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CLAINKJO_01786	8.66e-135	rimI	2.3.1.128	-	K	ko:K03789	-	ko00000,ko01000,ko03009	Ribosomal-protein-alanine acetyltransferase
CLAINKJO_01787	4.43e-163	yeaZ	2.3.1.234	-	O	ko:K01409,ko:K14742	-	ko00000,ko01000,ko03016	Universal bacterial protein YeaZ
CLAINKJO_01788	1.21e-246	galE	5.1.3.2	-	M	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family
CLAINKJO_01789	1.13e-222	ppx	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
CLAINKJO_01790	0.0	ppk	2.7.4.1	-	P	ko:K00937	ko00190,ko03018,map00190,map03018	ko00000,ko00001,ko01000,ko03019	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CLAINKJO_01791	0.0	ppx3	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
CLAINKJO_01792	3.67e-177	fat	3.1.2.21	-	I	ko:K01071	ko00061,ko01100,map00061,map01100	ko00000,ko00001,ko01000,ko01004	Acyl-ACP thioesterase
CLAINKJO_01793	9.87e-204	rsmI	2.1.1.198	-	H	ko:K07056	-	ko00000,ko01000,ko03009	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CLAINKJO_01794	6.41e-77	yabA	-	-	L	-	-	-	Involved in initiation control of chromosome replication
CLAINKJO_01795	2.72e-237	holB	2.7.7.7	-	L	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
CLAINKJO_01796	4.02e-69	yaaQ	-	-	S	-	-	-	Cyclic-di-AMP receptor
CLAINKJO_01797	6.4e-149	tmk	2.7.4.9	-	F	ko:K00943	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CLAINKJO_01798	4.67e-52	-	-	-	S	-	-	-	Protein of unknown function (DUF2508)
CLAINKJO_01799	4.92e-142	recR	-	-	L	ko:K06187	ko03440,map03440	ko00000,ko00001,ko03400	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CLAINKJO_01800	5.87e-62	yaaK	-	-	S	ko:K09747	-	ko00000	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CLAINKJO_01801	0.0	dnaX	2.7.7.7	-	L	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLAINKJO_01802	6.21e-119	tadA	3.5.4.33	-	F	ko:K11991	-	ko00000,ko01000,ko03016	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
CLAINKJO_01803	9.33e-48	nrdH	-	-	O	ko:K06191	-	ko00000	Glutaredoxin
CLAINKJO_01804	0.0	nrdE	1.17.4.1	-	F	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLAINKJO_01805	9.35e-255	nrdF	1.17.4.1	-	F	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLAINKJO_01806	0.0	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
CLAINKJO_01807	5.22e-176	-	-	-	S	ko:K11621	ko02020,map02020	ko00000,ko00001	Putative adhesin
CLAINKJO_01808	3.26e-128	-	-	-	S	-	-	-	Protein of unknown function (DUF1700)
CLAINKJO_01809	1.14e-74	XK27_06915	-	-	K	ko:K10947	-	ko00000,ko03000	transcriptional regulator PadR family
CLAINKJO_01810	1.2e-64	mscL	-	-	M	ko:K03282	-	ko00000,ko02000	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
CLAINKJO_01812	8.34e-65	-	-	-	-	-	-	-	-
CLAINKJO_01813	2.46e-72	rplL	-	-	J	ko:K02935	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
CLAINKJO_01814	3.6e-107	rplJ	-	-	J	ko:K02864	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CLAINKJO_01815	4.4e-268	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
CLAINKJO_01816	4.44e-310	-	-	-	M	-	-	-	Glycosyl transferase family group 2
CLAINKJO_01818	3.22e-289	aadAT	-	-	EK	ko:K05825	ko00300,ko01100,ko01130,ko01210,map00300,map01100,map01130,map01210	ko00000,ko00001,ko01000	Aminotransferase, class I
CLAINKJO_01819	8.31e-158	rplA	-	-	J	ko:K02863	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
CLAINKJO_01820	1.39e-92	rplK	-	-	J	ko:K02867	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CLAINKJO_01821	1.1e-126	nusG	-	-	K	ko:K02601	-	ko00000,ko03009,ko03021	Participates in transcription elongation, termination and antitermination
CLAINKJO_01822	7.11e-32	secE	-	-	U	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
CLAINKJO_01823	9.18e-31	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
CLAINKJO_01824	2.12e-174	trmH	2.1.1.185	-	J	ko:K03218	-	ko00000,ko01000,ko03009	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLAINKJO_01825	3.58e-93	mrnC	-	-	J	ko:K11145	-	ko00000,ko01000,ko03009	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
CLAINKJO_01826	0.0	cysS	6.1.1.16	-	J	ko:K01883	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
CLAINKJO_01827	6.97e-264	yacL	-	-	S	-	-	-	domain protein
CLAINKJO_01828	0.0	radA	-	-	O	ko:K04485	-	ko00000,ko03400	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CLAINKJO_01829	1.39e-128	dut	3.6.1.23	-	F	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	dUTP diphosphatase
CLAINKJO_01830	4.04e-67	yjdJ	-	-	S	ko:K06975	-	ko00000	GCN5-related N-acetyl-transferase
CLAINKJO_01831	3.41e-160	rpiA	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CLAINKJO_01832	0.0	pepC	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
CLAINKJO_01833	7.09e-180	tcyA	-	-	ET	ko:K02424	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko02035	Belongs to the bacterial solute-binding protein 3 family
CLAINKJO_01834	9.69e-171	-	-	-	E	ko:K10010	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_01835	9.62e-154	tcyB	-	-	E	ko:K10009	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLAINKJO_01836	2.89e-272	mccB	4.4.1.1, 4.4.1.2, 4.4.1.8	-	E	ko:K01760,ko:K17217	ko00260,ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00260,map00270,map00450,map00920,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	cystathionine
CLAINKJO_01837	4.24e-214	-	-	-	I	-	-	-	alpha/beta hydrolase fold
CLAINKJO_01838	3.04e-172	gpmA1	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CLAINKJO_01839	0.0	-	-	-	S	-	-	-	Bacterial membrane protein, YfhO
CLAINKJO_01840	3.56e-233	lacM	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	beta-galactosidase
CLAINKJO_01841	0.0	lacL	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
CLAINKJO_01843	1.12e-109	ydcK	-	-	S	ko:K03095	-	ko00000	Belongs to the SprT family
CLAINKJO_01844	0.0	tex	-	-	K	ko:K06959	-	ko00000	Tex-like protein N-terminal domain protein
CLAINKJO_01845	1.51e-196	nadE	6.3.1.5	-	F	ko:K01916	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
CLAINKJO_01846	0.0	pncB	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CLAINKJO_01847	3.54e-165	yvoA_2	-	-	K	ko:K03710	-	ko00000,ko03000	UbiC transcription regulator-associated domain protein
CLAINKJO_01848	9.04e-171	racX	5.1.1.13	-	M	ko:K01779	ko00250,ko01054,map00250,map01054	ko00000,ko00001,ko01000	Belongs to the aspartate glutamate racemases family
CLAINKJO_01849	0.0	-	-	-	P	ko:K07085	-	ko00000	Predicted Permease Membrane Region
CLAINKJO_01850	0.0	-	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_01851	7.38e-142	-	-	-	-	-	-	-	-
CLAINKJO_01854	4.82e-189	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
CLAINKJO_01855	0.0	dtpT	-	-	U	ko:K03305	-	ko00000	amino acid peptide transporter
CLAINKJO_01858	2.68e-05	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLAINKJO_01859	5.05e-104	-	-	-	L	ko:K07491	-	ko00000	PFAM transposase IS200-family protein
CLAINKJO_01860	2.82e-105	-	-	-	-	-	-	-	-
CLAINKJO_01861	4.63e-166	-	-	-	M	-	-	-	Lysin motif
CLAINKJO_01862	2.34e-249	-	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_01863	1.87e-133	ywlG	-	-	S	-	-	-	Belongs to the UPF0340 family
CLAINKJO_01864	1.64e-203	-	-	-	J	-	-	-	Methyltransferase
CLAINKJO_01865	2.98e-288	oxlT	-	-	P	ko:K08177	-	ko00000,ko02000	Major Facilitator Superfamily
CLAINKJO_01866	0.0	guaA	6.3.5.2	-	F	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the synthesis of GMP from XMP
CLAINKJO_01868	2.62e-283	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
CLAINKJO_01869	8.32e-226	coaA	2.7.1.33	-	F	ko:K00867	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Pantothenic acid kinase
CLAINKJO_01870	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
CLAINKJO_01871	2.73e-206	-	-	-	EG	-	-	-	EamA-like transporter family
CLAINKJO_01872	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01873	0.0	nox	1.6.3.4	-	C	ko:K17869	-	ko00000,ko01000	NADH oxidase
CLAINKJO_01874	0.0	nox	1.6.3.4	-	C	ko:K17869	-	ko00000,ko01000	NADH oxidase
CLAINKJO_01875	0.0	helD	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	DNA helicase
CLAINKJO_01876	1.9e-147	-	-	-	S	ko:K03975	-	ko00000	SNARE associated Golgi protein
CLAINKJO_01877	1.64e-162	pgm3	-	-	G	-	-	-	phosphoglycerate mutase
CLAINKJO_01878	2.46e-289	hflX	-	-	S	ko:K03665	-	ko00000,ko03009	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CLAINKJO_01879	1.02e-13	-	-	-	-	-	-	-	-
CLAINKJO_01880	1.98e-42	-	-	-	S	-	-	-	Transglycosylase associated protein
CLAINKJO_01881	6.47e-10	-	-	-	S	-	-	-	CsbD-like
CLAINKJO_01882	2.3e-230	-	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLAINKJO_01883	0.0	yhgE	-	-	V	ko:K01421	-	ko00000	domain protein
CLAINKJO_01884	6.12e-123	-	-	-	K	-	-	-	Transcriptional regulator (TetR family)
CLAINKJO_01885	1.44e-51	pspC	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	PspC domain protein
CLAINKJO_01886	1.98e-194	-	-	-	-	-	-	-	-
CLAINKJO_01887	5.09e-30	-	3.2.1.14	GH18	-	ko:K01183	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	-
CLAINKJO_01888	1.27e-108	zur	-	-	P	ko:K02076,ko:K03711	-	ko00000,ko03000	Belongs to the Fur family
CLAINKJO_01889	1.08e-131	gmk2	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Guanylate kinase
CLAINKJO_01890	3.46e-95	-	-	-	F	-	-	-	Nudix hydrolase
CLAINKJO_01891	0.0	yhdG	-	-	E	ko:K03294	-	ko00000	Amino Acid
CLAINKJO_01892	2.02e-288	-	-	-	EGP	ko:K08368	-	ko00000,ko02000	Sugar (and other) transporter
CLAINKJO_01893	1.54e-290	-	-	-	-	-	-	-	-
CLAINKJO_01894	6.98e-266	potD	-	-	P	ko:K11069	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLAINKJO_01895	4.43e-183	potC	-	-	P	ko:K11070	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLAINKJO_01896	1.44e-186	potB	-	-	P	ko:K11071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLAINKJO_01897	1.25e-262	potA	3.6.3.30, 3.6.3.31	-	P	ko:K02010,ko:K11072	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
CLAINKJO_01898	0.0	pepX	3.4.14.11	-	E	ko:K01281	-	ko00000,ko01000,ko01002	Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
CLAINKJO_01899	1.23e-225	pepR	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
CLAINKJO_01900	0.0	atp2C1	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
CLAINKJO_01901	2.93e-112	dps	-	-	P	ko:K04047	-	ko00000,ko03036	Belongs to the Dps family
CLAINKJO_01902	0.0	yagE	-	-	E	-	-	-	amino acid
CLAINKJO_01903	9.07e-150	-	-	-	S	-	-	-	HAD hydrolase, family IA, variant
CLAINKJO_01904	7.3e-192	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLAINKJO_01906	6.91e-29	-	-	-	S	-	-	-	Domain of unknown function (DUF4767)
CLAINKJO_01908	5.66e-232	yumC	1.18.1.2, 1.19.1.1	-	C	ko:K21567	-	ko00000,ko01000	Ferredoxin--NADP reductase
CLAINKJO_01909	6.38e-232	iunH1	3.2.2.1	-	F	ko:K01239	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	nucleoside hydrolase
CLAINKJO_01910	1.28e-176	-	-	-	IQ	-	-	-	KR domain
CLAINKJO_01911	2.09e-171	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
CLAINKJO_01912	2.57e-128	ykoE	-	-	S	ko:K16925	-	ko00000,ko00002,ko02000	ABC-type cobalt transport system, permease component
CLAINKJO_01913	0.0	-	-	-	S	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_01914	8.69e-149	-	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Cobalt transport protein
CLAINKJO_01915	1.31e-70	-	-	-	-	-	-	-	-
CLAINKJO_01916	0.0	nhaK	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
CLAINKJO_01917	2.59e-68	-	-	-	S	ko:K08987	-	ko00000	Protein of unknown function (DUF1304)
CLAINKJO_01918	1.03e-240	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
CLAINKJO_01919	1.3e-95	-	-	-	K	-	-	-	Transcriptional regulator
CLAINKJO_01920	3.88e-204	-	-	-	-	-	-	-	-
CLAINKJO_01921	7.56e-170	-	-	-	C	-	-	-	Zinc-binding dehydrogenase
CLAINKJO_01922	3.11e-42	-	-	-	C	-	-	-	Zinc-binding dehydrogenase
CLAINKJO_01923	0.0	-	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system Galactitol-specific IIC component
CLAINKJO_01924	1.37e-270	-	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_01925	2.25e-46	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
CLAINKJO_01926	0.0	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
CLAINKJO_01927	5.33e-116	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
CLAINKJO_01928	1.16e-151	-	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
CLAINKJO_01929	3.18e-11	-	-	-	-	-	-	-	-
CLAINKJO_01930	1.78e-83	-	-	-	-	-	-	-	-
CLAINKJO_01931	4.97e-249	lplA	6.3.1.20	-	H	ko:K03800	ko00785,ko01100,map00785,map01100	ko00000,ko00001,ko01000	Lipoate-protein ligase
CLAINKJO_01932	7.46e-106	uspA3	-	-	T	-	-	-	universal stress protein
CLAINKJO_01933	0.0	fusA1	-	-	J	-	-	-	elongation factor G
CLAINKJO_01934	1.53e-213	-	-	-	GK	-	-	-	ROK family
CLAINKJO_01935	1.02e-312	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
CLAINKJO_01936	1.5e-178	yfhR3	-	-	S	ko:K06889	-	ko00000	Serine hydrolase (FSH1)
CLAINKJO_01937	1.5e-310	-	-	-	E	-	-	-	amino acid
CLAINKJO_01938	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
CLAINKJO_01939	1.82e-172	gntR	-	-	K	-	-	-	UbiC transcription regulator-associated domain protein
CLAINKJO_01940	6.71e-113	ebsC	-	-	J	ko:K03976	-	ko00000,ko01000,ko03016	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CLAINKJO_01941	0.0	pepD2	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLAINKJO_01942	0.0	yfiC	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
CLAINKJO_01943	0.0	ycfI	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_01944	1.92e-240	ldhA	1.1.1.28	-	C	ko:K03778,ko:K18347	ko00620,ko01120,ko01502,ko02020,map00620,map01120,map01502,map02020	ko00000,ko00001,ko00002,ko01000,ko01504	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLAINKJO_01945	4.17e-174	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
CLAINKJO_01946	7.93e-197	-	-	-	-	-	-	-	-
CLAINKJO_01947	1.77e-198	-	-	-	G	-	-	-	Xylose isomerase domain protein TIM barrel
CLAINKJO_01948	4.81e-239	XK27_12525	-	-	S	-	-	-	AI-2E family transporter
CLAINKJO_01949	1.75e-169	XK27_07210	-	-	S	-	-	-	B3 4 domain
CLAINKJO_01950	6.71e-102	yybA	-	-	K	-	-	-	Transcriptional regulator
CLAINKJO_01951	5.25e-118	-	-	-	K	-	-	-	Domain of unknown function (DUF1836)
CLAINKJO_01952	8.08e-117	-	-	-	GM	-	-	-	epimerase
CLAINKJO_01953	3.83e-196	-	-	-	V	-	-	-	(ABC) transporter
CLAINKJO_01954	9.66e-307	yhdP	-	-	S	-	-	-	Transporter associated domain
CLAINKJO_01955	4e-110	nrdI	-	-	F	ko:K03647	-	ko00000	Belongs to the NrdI family
CLAINKJO_01956	1.76e-84	-	-	-	S	ko:K04750	-	ko00000	3-demethylubiquinone-9 3-methyltransferase
CLAINKJO_01957	3.59e-244	yycB	-	-	P	ko:K03449	-	ko00000,ko02000	Transporter, major facilitator family protein
CLAINKJO_01958	0.0	zwf	1.1.1.363, 1.1.1.49	-	G	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CLAINKJO_01959	0.0	gnd	1.1.1.343, 1.1.1.44	-	H	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CLAINKJO_01960	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01961	1.06e-53	-	-	-	-	-	-	-	-
CLAINKJO_01962	0.0	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
CLAINKJO_01963	1.57e-102	usp5	-	-	T	-	-	-	universal stress protein
CLAINKJO_01964	6.62e-105	-	-	-	K	ko:K03719	-	ko00000,ko03000,ko03036	AsnC family
CLAINKJO_01965	0.0	-	-	-	L	-	-	-	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLAINKJO_01966	5.61e-292	gltT	-	-	U	ko:K03309,ko:K11102	-	ko00000,ko02000	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family
CLAINKJO_01967	1.57e-135	apl	3.1.3.1	-	S	ko:K01077	ko00730,ko00790,ko01100,ko02020,map00730,map00790,map01100,map02020	ko00000,ko00001,ko00002,ko00537,ko01000,ko04147	SNARE associated Golgi protein
CLAINKJO_01968	2.92e-233	galR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
CLAINKJO_01969	0.0	galT	2.7.7.12	-	G	ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	ko00000,ko00001,ko00002,ko01000	UDP-glucose--hexose-1-phosphate uridylyltransferase
CLAINKJO_01970	5.13e-288	galK	2.7.1.6	-	F	ko:K00849	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CLAINKJO_01971	2.91e-229	celE3	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase family
CLAINKJO_01972	4.87e-190	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
CLAINKJO_01973	6.48e-120	-	-	-	S	ko:K06910	-	ko00000	Phosphatidylethanolamine-binding protein
CLAINKJO_01974	1.21e-48	-	-	-	-	-	-	-	-
CLAINKJO_01975	1.76e-68	-	-	-	-	-	-	-	-
CLAINKJO_01976	5.27e-260	-	-	-	-	-	-	-	-
CLAINKJO_01977	4.74e-107	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
CLAINKJO_01978	6.86e-176	pnuC	-	-	H	ko:K03811	-	ko00000,ko02000	nicotinamide mononucleotide transporter
CLAINKJO_01979	6.94e-200	yvgN	-	-	S	-	-	-	Aldo keto reductase
CLAINKJO_01980	4.33e-161	XK27_10500	-	-	K	-	-	-	response regulator
CLAINKJO_01981	1.84e-234	kinG	-	-	T	-	-	-	Histidine kinase-like ATPases
CLAINKJO_01982	9.68e-172	XK27_05695	-	-	V	ko:K02003,ko:K19083	ko02010,ko02020,map02010,map02020	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_01983	0.0	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	FtsX-like permease family
CLAINKJO_01984	2e-201	metA	2.3.1.46	-	E	ko:K00651	ko00270,ko00920,ko01100,ko01110,ko01230,map00270,map00920,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Transfers an acetyl group from acetyl-CoA to
CLAINKJO_01985	6.47e-214	cysK	2.5.1.47	-	E	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the cysteine synthase cystathionine beta- synthase family
CLAINKJO_01986	1.39e-69	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
CLAINKJO_01987	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLAINKJO_01988	1.41e-250	-	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_01989	7.88e-116	ymdB	-	-	S	-	-	-	Macro domain protein
CLAINKJO_01990	2.59e-143	-	-	-	K	-	-	-	Helix-turn-helix domain
CLAINKJO_01991	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
CLAINKJO_01992	2.98e-64	-	-	-	-	-	-	-	-
CLAINKJO_01993	1.02e-295	-	-	-	S	-	-	-	Putative metallopeptidase domain
CLAINKJO_01994	7.87e-266	-	-	-	S	-	-	-	associated with various cellular activities
CLAINKJO_01995	1.11e-152	yxlJ	3.2.2.21	-	L	ko:K03652	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Belongs to the DNA glycosylase MPG family
CLAINKJO_01996	2.63e-84	yeaO	-	-	S	-	-	-	Protein of unknown function, DUF488
CLAINKJO_01998	3.52e-153	yrkL	-	-	S	-	-	-	Flavodoxin-like fold
CLAINKJO_01999	1.11e-70	-	-	-	-	-	-	-	-
CLAINKJO_02001	2.2e-178	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLAINKJO_02002	3.53e-66	-	-	-	-	-	-	-	-
CLAINKJO_02003	3.19e-263	yngD	-	-	S	ko:K07097	-	ko00000	DHHA1 domain
CLAINKJO_02004	3.82e-295	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2325)
CLAINKJO_02005	3.61e-316	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
CLAINKJO_02006	4.21e-137	-	-	-	NU	-	-	-	mannosyl-glycoprotein
CLAINKJO_02007	2.14e-188	-	-	-	S	-	-	-	Putative ABC-transporter type IV
CLAINKJO_02008	0.0	-	-	-	S	-	-	-	ABC transporter, ATP-binding protein
CLAINKJO_02009	3.56e-06	-	-	-	K	-	-	-	Helix-turn-helix domain
CLAINKJO_02011	1.94e-47	arsR	-	-	K	ko:K03892	-	ko00000,ko03000	helix_turn_helix, Arsenical Resistance Operon Repressor
CLAINKJO_02012	3.43e-230	arsB	-	-	P	ko:K03325	-	ko00000,ko02000	Sodium Bile acid symporter family
CLAINKJO_02013	8.56e-90	arsC	1.20.4.1	-	T	ko:K03741	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLAINKJO_02014	1.51e-75	cadX	-	-	K	ko:K21903	-	ko00000,ko03000	Bacterial regulatory protein, arsR family
CLAINKJO_02015	3.39e-131	cadD	-	-	P	-	-	-	Cadmium resistance transporter
CLAINKJO_02016	1.07e-31	-	-	-	K	-	-	-	Helix-turn-helix domain
CLAINKJO_02017	1.28e-41	-	-	-	K	ko:K07729	-	ko00000,ko03000	Helix-turn-helix domain
CLAINKJO_02018	7.97e-131	-	-	-	S	-	-	-	Protein of unknown function (DUF3278)
CLAINKJO_02020	5.36e-163	-	-	-	M	-	-	-	PFAM NLP P60 protein
CLAINKJO_02021	4.49e-233	ABC-SBP	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
CLAINKJO_02022	1.18e-196	XK27_08840	-	-	U	ko:K05832	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
CLAINKJO_02023	5.63e-177	XK27_08845	-	-	S	ko:K05833	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_02024	1.48e-123	-	-	-	P	-	-	-	Cadmium resistance transporter
CLAINKJO_02025	1.14e-74	czrA	-	-	K	ko:K22043	-	ko00000,ko03000	Transcriptional regulator, ArsR family
CLAINKJO_02026	1.25e-301	mepA	-	-	V	ko:K18908	-	ko00000,ko00002,ko01504,ko02000	MATE efflux family protein
CLAINKJO_02027	4.38e-72	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
CLAINKJO_02028	3.78e-169	yceF	-	-	P	ko:K05794	-	ko00000	membrane
CLAINKJO_02029	3.46e-213	rluA	5.4.99.23, 5.4.99.28, 5.4.99.29	-	J	ko:K06177,ko:K06180	-	ko00000,ko01000,ko03009,ko03016	Responsible for synthesis of pseudouridine from uracil
CLAINKJO_02030	6.47e-213	corA	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
CLAINKJO_02031	0.0	pepD1	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLAINKJO_02032	4.79e-307	pbuX	-	-	F	ko:K03458,ko:K16169	-	ko00000,ko02000	xanthine permease
CLAINKJO_02033	1.63e-314	nhaC	-	-	C	ko:K03315	-	ko00000,ko02000	Na H antiporter NhaC
CLAINKJO_02034	0.0	-	-	-	S	-	-	-	C4-dicarboxylate anaerobic carrier
CLAINKJO_02035	9.5e-162	pgm3	-	-	G	-	-	-	phosphoglycerate mutase family
CLAINKJO_02036	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
CLAINKJO_02037	6.69e-263	gldA	1.1.1.6	-	C	ko:K00005	ko00561,ko00640,ko01100,map00561,map00640,map01100	ko00000,ko00001,ko01000	dehydrogenase
CLAINKJO_02038	3.48e-186	-	-	-	S	-	-	-	Alpha beta hydrolase
CLAINKJO_02039	1.33e-275	dacA	3.4.16.4	-	M	ko:K01286,ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
CLAINKJO_02040	6.47e-130	-	-	-	-	-	-	-	-
CLAINKJO_02042	5.94e-161	-	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
CLAINKJO_02043	0.0	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
CLAINKJO_02044	1.06e-142	nnrE	5.1.99.6	-	H	ko:K17759	-	ko00000,ko01000	Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S- specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX
CLAINKJO_02045	6.03e-114	-	-	-	-	-	-	-	-
CLAINKJO_02046	1.61e-310	hisS	6.1.1.21	-	J	ko:K01892	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	histidyl-tRNA synthetase
CLAINKJO_02047	1.28e-275	yttB	-	-	EGP	-	-	-	Major Facilitator
CLAINKJO_02048	1.03e-146	-	-	-	-	-	-	-	-
CLAINKJO_02049	2.6e-33	-	-	-	-	-	-	-	-
CLAINKJO_02050	1.38e-223	scrR	-	-	K	ko:K02529,ko:K03484	-	ko00000,ko03000	Transcriptional regulator, LacI family
CLAINKJO_02051	0.0	-	3.2.1.17	CBM50	NU	ko:K01185,ko:K02395,ko:K19223	-	ko00000,ko01000,ko01002,ko01011,ko02035	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CLAINKJO_02052	1.36e-66	czrA	-	-	K	ko:K22043	-	ko00000,ko03000	Transcriptional regulator, ArsR family
CLAINKJO_02053	6.59e-48	-	-	-	-	-	-	-	-
CLAINKJO_02054	0.0	yhcA	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_02055	4.1e-153	lolD	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_02056	4.82e-234	yxeA	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
CLAINKJO_02057	2.34e-116	-	-	-	K	-	-	-	transcriptional regulator (TetR family)
CLAINKJO_02058	7.01e-244	-	-	-	E	-	-	-	Zinc-binding dehydrogenase
CLAINKJO_02059	0.0	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
CLAINKJO_02060	2.39e-71	-	-	-	-	-	-	-	-
CLAINKJO_02061	0.0	thrS	6.1.1.3	-	J	ko:K01868	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CLAINKJO_02063	1.09e-291	yxiO	-	-	S	ko:K06902	ko04138,map04138	ko00000,ko00001,ko02000,ko04131	Vacuole effluxer Atg22 like
CLAINKJO_02064	0.0	npp	-	-	S	-	-	-	type I phosphodiesterase nucleotide pyrophosphatase
CLAINKJO_02065	9.08e-317	-	-	-	E	ko:K03294	-	ko00000	amino acid
CLAINKJO_02066	3.29e-233	panE	1.1.1.169	-	H	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLAINKJO_02068	2.76e-269	-	2.1.1.14	-	E	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	methionine synthase, vitamin-B12 independent
CLAINKJO_02069	5.47e-55	-	-	-	S	-	-	-	Cytochrome B5
CLAINKJO_02070	8.47e-08	-	-	-	S	-	-	-	Cytochrome B5
CLAINKJO_02071	2.3e-52	-	-	-	S	-	-	-	Cytochrome B5
CLAINKJO_02072	1.48e-98	-	-	-	S	ko:K02348	-	ko00000	Gnat family
CLAINKJO_02073	6.67e-158	-	-	-	GM	-	-	-	NmrA-like family
CLAINKJO_02074	4.55e-68	ydeP	-	-	K	-	-	-	Transcriptional regulator, HxlR family
CLAINKJO_02075	3.33e-140	XK27_02070	-	-	S	ko:K07078	-	ko00000	Nitroreductase family
CLAINKJO_02076	3.08e-107	-	-	-	K	-	-	-	Transcriptional regulator, HxlR family
CLAINKJO_02077	3.24e-291	-	-	-	-	-	-	-	-
CLAINKJO_02078	1.53e-268	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
CLAINKJO_02079	0.0	pepE	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
CLAINKJO_02080	8.37e-145	-	-	-	GM	-	-	-	NAD dependent epimerase dehydratase family protein
CLAINKJO_02081	0.0	pepN	3.4.11.2	-	E	ko:K01256	ko00480,ko01100,map00480,map01100	ko00000,ko00001,ko01000,ko01002	aminopeptidase
CLAINKJO_02082	4.58e-122	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
CLAINKJO_02083	4.99e-253	asnA	6.3.1.1	-	F	ko:K01914	ko00250,ko00460,ko01100,ko01110,ko01230,map00250,map00460,map01100,map01110,map01230	ko00000,ko00001,ko01000	aspartate--ammonia ligase
CLAINKJO_02084	0.0	asnS	6.1.1.22	-	J	ko:K01893	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Asparaginyl-tRNA synthetase
CLAINKJO_02085	1.51e-146	-	-	-	T	-	-	-	Putative diguanylate phosphodiesterase
CLAINKJO_02086	2.97e-255	-	2.7.7.65	-	T	ko:K02488	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko00002,ko01000,ko02022	GGDEF domain
CLAINKJO_02087	2.72e-164	-	-	-	F	-	-	-	glutamine amidotransferase
CLAINKJO_02088	6.81e-83	-	-	-	-	-	-	-	-
CLAINKJO_02089	7.12e-142	-	-	-	GM	-	-	-	NAD(P)H-binding
CLAINKJO_02090	1.21e-248	-	-	-	S	-	-	-	membrane
CLAINKJO_02091	2.76e-135	-	-	-	K	-	-	-	Transcriptional regulator C-terminal region
CLAINKJO_02092	1.57e-202	akr5f	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
CLAINKJO_02093	1.54e-176	-	-	-	K	-	-	-	Transcriptional regulator
CLAINKJO_02094	8.09e-235	ansA	3.5.1.1	-	EJ	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110	ko00000,ko00001,ko01000	L-asparaginase, type I
CLAINKJO_02095	2.05e-214	ypuA	-	-	S	-	-	-	Protein of unknown function (DUF1002)
CLAINKJO_02096	1.17e-291	aadAT	-	-	EK	ko:K05825	ko00300,ko01100,ko01130,ko01210,map00300,map01100,map01130,map01210	ko00000,ko00001,ko01000	Aminotransferase, class I
CLAINKJO_02097	2.28e-223	hdhL	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
CLAINKJO_02098	6.93e-195	mhpD	-	-	Q	ko:K02509	ko00350,ko01120,map00350,map01120	ko00000,ko00001,ko01000	hydratase
CLAINKJO_02099	1.63e-166	-	-	-	S	-	-	-	Alpha beta hydrolase
CLAINKJO_02100	1.64e-105	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
CLAINKJO_02101	1.95e-44	lysR	-	-	K	-	-	-	Transcriptional regulator
CLAINKJO_02102	2.57e-109	-	-	-	C	-	-	-	Flavodoxin
CLAINKJO_02103	2.23e-14	-	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	Oxidoreductase, aldo keto reductase family protein
CLAINKJO_02104	1.62e-09	yphJ	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	decarboxylase
CLAINKJO_02105	2.18e-45	yphJ	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	decarboxylase
CLAINKJO_02106	1.01e-10	-	-	-	S	ko:K07124	-	ko00000	Enoyl-(Acyl carrier protein) reductase
CLAINKJO_02107	5.86e-139	-	-	-	P	-	-	-	nitric oxide dioxygenase activity
CLAINKJO_02108	6.26e-137	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
CLAINKJO_02109	4.16e-297	-	-	-	T	-	-	-	GHKL domain
CLAINKJO_02110	8e-154	-	-	-	T	-	-	-	Transcriptional regulatory protein, C terminal
CLAINKJO_02111	2.71e-207	-	-	-	S	ko:K07088	-	ko00000	Membrane transport protein
CLAINKJO_02112	9.3e-152	-	-	-	H	-	-	-	RibD C-terminal domain
CLAINKJO_02116	2.8e-265	-	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
CLAINKJO_02117	3.59e-151	-	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
CLAINKJO_02118	1.96e-221	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_02119	7.18e-86	-	-	-	L	ko:K07491	-	ko00000	Transposase IS200 like
CLAINKJO_02120	2.31e-31	comA	-	-	V	ko:K06147,ko:K06148,ko:K12292,ko:K20344	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko01000,ko02000	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
CLAINKJO_02121	4.96e-24	-	-	-	-	-	-	-	-
CLAINKJO_02122	1.02e-26	-	-	-	L	-	-	-	Addiction module antitoxin, RelB DinJ family
CLAINKJO_02123	4.08e-112	-	-	-	J	ko:K19055	-	ko00000,ko01000,ko03016	Aminoacyl-tRNA editing domain
CLAINKJO_02124	3.87e-83	arsC	1.20.4.1	-	T	ko:K03741	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLAINKJO_02125	7.34e-250	flp	-	-	V	-	-	-	Beta-lactamase
CLAINKJO_02126	4.31e-123	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLAINKJO_02127	2.4e-159	-	-	-	S	ko:K07507	-	ko00000,ko02000	MgtC family
CLAINKJO_02128	1.5e-10	-	-	-	-	-	-	-	-
CLAINKJO_02129	9.14e-146	-	-	-	S	-	-	-	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
CLAINKJO_02130	4.52e-57	azlD	-	-	E	-	-	-	Branched-chain amino acid transport
CLAINKJO_02131	1.02e-11	-	-	-	-	-	-	-	-
CLAINKJO_02132	2.02e-30	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 type transporter
CLAINKJO_02133	2.66e-106	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLAINKJO_02134	2.99e-50	-	-	-	K	ko:K20375	ko02024,map02024	ko00000,ko00001,ko03000	Transcriptional activator, Rgg GadR MutR family
CLAINKJO_02135	0.0	-	-	-	S	-	-	-	amidohydrolase
CLAINKJO_02136	2.65e-212	-	-	-	S	-	-	-	reductase
CLAINKJO_02137	2.1e-119	-	2.3.1.183	-	M	ko:K03823	ko00440,ko01130,map00440,map01130	ko00000,ko00001,ko01000	Acetyltransferase, GNAT family
CLAINKJO_02138	2.44e-147	lepB	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
CLAINKJO_02139	1.81e-315	yxbA	6.3.1.12	-	S	ko:K17810	-	ko00000,ko01000	ATP-grasp enzyme
CLAINKJO_02140	0.0	murE	6.3.2.13, 6.3.2.7	-	M	ko:K01928,ko:K05362	ko00300,ko00550,ko01100,map00300,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CLAINKJO_02141	0.0	asnB	6.3.5.4	-	E	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	ko00000,ko00001,ko01000,ko01002	Asparagine synthase
CLAINKJO_02142	0.0	gidA	-	-	D	ko:K03495	-	ko00000,ko03016,ko03036	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
CLAINKJO_02143	0.0	mnmE	-	-	S	ko:K03650	-	ko00000,ko01000,ko03016	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CLAINKJO_02144	2.28e-172	jag	-	-	S	ko:K06346	-	ko00000	R3H domain protein
CLAINKJO_02145	2.96e-172	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
CLAINKJO_02146	1.39e-76	rnpA	3.1.26.5	-	J	ko:K03536	-	ko00000,ko01000,ko03016	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
CLAINKJO_02147	7.96e-21	rpmH	-	-	J	ko:K02914	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL34 family
CLAINKJO_02148	0.0	-	-	-	V	-	-	-	DNA restriction-modification system
CLAINKJO_02152	3.06e-91	soj	-	-	D	-	-	-	CobQ CobB MinD ParA nucleotide binding domain protein
CLAINKJO_02154	3.05e-14	-	-	-	-	-	-	-	-
CLAINKJO_02157	4.42e-171	-	-	-	U	-	-	-	TraM recognition site of TraD and TraG
CLAINKJO_02162	0.0	-	-	-	L	-	-	-	Transposase
CLAINKJO_02163	6.15e-30	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_02165	6.26e-48	-	-	-	-	-	-	-	-
CLAINKJO_02168	7.45e-77	-	-	-	M	-	-	-	CHAP domain
CLAINKJO_02169	1.76e-06	-	-	-	M	-	-	-	Prophage endopeptidase tail
CLAINKJO_02173	8.28e-15	-	-	-	L	-	-	-	Resolvase, N-terminal
CLAINKJO_02175	2.55e-91	endA	-	-	F	ko:K15051	-	ko00000	DNA RNA non-specific endonuclease
CLAINKJO_02176	8.16e-74	-	-	-	L	-	-	-	Initiator Replication protein
CLAINKJO_02177	1.96e-221	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_02178	7.18e-86	-	-	-	L	ko:K07491	-	ko00000	Transposase IS200 like
CLAINKJO_02180	1.74e-198	-	-	-	S	-	-	-	membrane
CLAINKJO_02181	1.28e-178	-	-	-	V	-	-	-	TaqI-like C-terminal specificity domain
CLAINKJO_02182	4.52e-43	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
CLAINKJO_02184	1.06e-15	-	-	-	K	-	-	-	prlF antitoxin for toxin YhaV_toxin
CLAINKJO_02185	9.63e-42	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
CLAINKJO_02187	5.3e-119	htpX	-	-	O	ko:K03799	-	ko00000,ko00002,ko01000,ko01002	Peptidase family M48
CLAINKJO_02197	1.07e-78	traI	5.99.1.2	-	L	ko:K03169	-	ko00000,ko01000,ko03032	DNA topoisomerase
CLAINKJO_02198	1.51e-17	-	-	-	M	-	-	-	LysM domain
CLAINKJO_02204	0.0	-	-	-	L	-	-	-	Transposase
CLAINKJO_02206	6.94e-12	-	-	-	M	-	-	-	Rib/alpha-like repeat
CLAINKJO_02208	2.55e-48	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLAINKJO_02209	0.0	-	-	-	L	-	-	-	Transposase
CLAINKJO_02213	2.04e-44	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC P60 family protein
CLAINKJO_02218	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
CLAINKJO_02220	9.34e-160	-	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
CLAINKJO_02224	3.46e-170	-	-	-	M	-	-	-	MucBP domain
CLAINKJO_02225	4.52e-20	-	-	-	-	-	-	-	-
CLAINKJO_02226	9.81e-19	-	-	-	-	-	-	-	-
CLAINKJO_02227	4.05e-39	-	-	-	-	-	-	-	-
CLAINKJO_02228	1.56e-96	-	-	-	K	-	-	-	Putative DNA-binding domain
CLAINKJO_02229	1.95e-133	ypuA	-	-	S	-	-	-	Protein of unknown function (DUF1002)
CLAINKJO_02231	9.6e-111	-	-	-	L	-	-	-	Integrase
CLAINKJO_02234	1.96e-80	-	-	-	V	-	-	-	HNH endonuclease
CLAINKJO_02240	3.35e-25	ybjQ	-	-	S	-	-	-	Belongs to the UPF0145 family
CLAINKJO_02246	6.65e-307	-	-	-	L	ko:K07487	-	ko00000	Transposase
CLAINKJO_02247	3.15e-56	-	-	-	M	-	-	-	LysM domain protein
CLAINKJO_02249	1.02e-151	xerS	-	-	L	ko:K03733	-	ko00000,ko03036	Belongs to the 'phage' integrase family
CLAINKJO_02250	2.15e-307	-	-	-	L	ko:K07487	-	ko00000	Transposase
CLAINKJO_02251	7.18e-86	-	-	-	L	ko:K07491	-	ko00000	Transposase IS200 like
CLAINKJO_02252	1.96e-221	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_02253	9.86e-24	-	-	-	-	-	-	-	-
CLAINKJO_02254	4.46e-14	nrdH	-	-	O	ko:K06191	-	ko00000	Glutaredoxin
CLAINKJO_02256	2.04e-18	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.87
CLAINKJO_02259	5.32e-158	-	-	-	GM	-	-	-	NAD(P)H-binding
CLAINKJO_02260	1.32e-168	-	1.6.5.2	-	GM	ko:K19267	ko00130,ko01110,map00130,map01110	ko00000,ko00001,ko01000	NAD(P)H-binding
CLAINKJO_02261	2.45e-14	-	-	-	QT	-	-	-	PucR C-terminal helix-turn-helix domain
CLAINKJO_02264	1.96e-221	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_02265	7.18e-86	-	-	-	L	ko:K07491	-	ko00000	Transposase IS200 like
CLAINKJO_02267	6.86e-119	-	-	-	-	-	-	-	-
CLAINKJO_02268	0.0	-	-	-	U	-	-	-	Psort location Cytoplasmic, score
CLAINKJO_02270	5.76e-138	-	-	-	-	-	-	-	-
CLAINKJO_02276	5.42e-19	-	-	-	-	-	-	-	-
CLAINKJO_02277	4.09e-21	-	-	-	-	-	-	-	-
CLAINKJO_02278	1.69e-20	-	-	-	-	-	-	-	-
CLAINKJO_02279	5.78e-24	-	-	-	L	-	-	-	Addiction module antitoxin, RelB DinJ family
CLAINKJO_02284	8.04e-62	-	-	-	-	-	-	-	-
CLAINKJO_02285	1.96e-221	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_02286	7.18e-86	-	-	-	L	ko:K07491	-	ko00000	Transposase IS200 like
CLAINKJO_02287	3.24e-54	-	-	-	-	-	-	-	-
CLAINKJO_02288	2.06e-51	-	-	-	K	-	-	-	Antidote-toxin recognition MazE, bacterial antitoxin
CLAINKJO_02290	1.98e-66	-	-	-	S	-	-	-	protein conserved in bacteria
CLAINKJO_02292	1.97e-101	-	-	-	S	-	-	-	Fic/DOC family
CLAINKJO_02298	5.78e-10	-	-	-	S	-	-	-	Antirestriction protein (ArdA)
CLAINKJO_02304	2.77e-05	-	-	-	-	-	-	-	-
CLAINKJO_02305	5.92e-307	-	-	-	L	ko:K07487	-	ko00000	Transposase
CLAINKJO_02306	1.96e-221	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLAINKJO_02307	7.18e-86	-	-	-	L	ko:K07491	-	ko00000	Transposase IS200 like
CLAINKJO_02313	2.3e-100	-	-	-	-	-	-	-	-
CLAINKJO_02315	2.45e-156	-	-	-	M	-	-	-	Psort location Cellwall, score
CLAINKJO_02316	0.0	-	-	-	L	-	-	-	helicase superfamily c-terminal domain