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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	KEGG_ko	KEGG_Pathway	BRITE	Description
CLDPALIF_00002	7.88e-79	celC	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose Cellobiose specific IIA subunit
CLDPALIF_00003	2.19e-73	pts20B	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
CLDPALIF_00004	4.65e-166	-	-	-	K	ko:K03492	-	ko00000,ko03000	UTRA domain
CLDPALIF_00005	0.0	pbg4	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
CLDPALIF_00006	2.06e-111	alkD	-	-	L	-	-	-	DNA alkylation repair enzyme
CLDPALIF_00007	3.14e-226	iunH	3.2.2.1	-	F	ko:K01239	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	inosine-uridine preferring nucleoside hydrolase
CLDPALIF_00008	4.49e-108	-	-	-	-	-	-	-	-
CLDPALIF_00009	1.83e-54	-	-	-	C	-	-	-	FMN_bind
CLDPALIF_00010	1.48e-139	-	-	-	EGP	-	-	-	Major Facilitator
CLDPALIF_00011	9.16e-301	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLDPALIF_00012	1.38e-95	-	-	-	EGP	-	-	-	Major Facilitator
CLDPALIF_00013	6.29e-38	-	-	-	-	-	-	-	-
CLDPALIF_00015	3.3e-42	-	-	-	-	-	-	-	-
CLDPALIF_00016	3.98e-97	-	-	-	M	-	-	-	LysM domain
CLDPALIF_00017	3.51e-96	-	3.6.4.12	-	K	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Putative DNA-binding domain
CLDPALIF_00018	6.94e-202	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLDPALIF_00019	0.0	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
CLDPALIF_00020	0.0	pckA	4.1.1.49	-	H	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Phosphoenolpyruvate carboxykinase
CLDPALIF_00021	1.23e-242	-	-	-	S	-	-	-	TerB-C domain
CLDPALIF_00022	2.5e-136	fabK	1.3.1.9	-	S	ko:K02371	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Nitronate monooxygenase
CLDPALIF_00023	8.45e-102	pct	2.8.3.1	-	I	ko:K01026	ko00620,ko00640,ko00643,ko01100,ko01120,map00620,map00640,map00643,map01100,map01120	ko00000,ko00001,ko01000	Coenzyme A transferase
CLDPALIF_00024	4.12e-205	pct	2.8.3.1	-	I	ko:K01026	ko00620,ko00640,ko00643,ko01100,ko01120,map00620,map00640,map00643,map01100,map01120	ko00000,ko00001,ko01000	Coenzyme A transferase
CLDPALIF_00025	5.38e-184	-	-	-	K	-	-	-	LysR substrate binding domain
CLDPALIF_00026	1.47e-70	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CLDPALIF_00027	1.41e-97	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
CLDPALIF_00028	3.28e-101	coaA	2.7.1.33	-	F	ko:K00867	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Pantothenic acid kinase
CLDPALIF_00031	3.53e-35	-	-	-	C	ko:K21832	-	ko00000	nitric oxide dioxygenase activity
CLDPALIF_00032	1.5e-27	-	-	-	S	-	-	-	Enterocin A Immunity
CLDPALIF_00034	1.23e-54	-	-	-	V	ko:K20345	ko02024,map02024	ko00000,ko00001,ko02000	HlyD family secretion protein
CLDPALIF_00035	0.0	comA	-	-	V	ko:K06147,ko:K06148,ko:K12292,ko:K20344	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko01000,ko02000	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
CLDPALIF_00036	1.64e-101	-	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
CLDPALIF_00037	1.79e-99	-	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
CLDPALIF_00038	2.26e-31	-	-	-	S	-	-	-	Transglycosylase associated protein
CLDPALIF_00039	3.81e-18	-	-	-	S	-	-	-	CsbD-like
CLDPALIF_00040	5.79e-214	scrK	2.7.1.4	-	GK	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	ROK family
CLDPALIF_00041	2.15e-171	-	-	-	V	-	-	-	ABC transporter transmembrane region
CLDPALIF_00042	2.36e-217	degV1	-	-	S	-	-	-	DegV family
CLDPALIF_00043	1.94e-217	phnD	-	-	P	ko:K02044	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, phosphonate, periplasmic substrate-binding protein
CLDPALIF_00044	5.53e-147	-	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
CLDPALIF_00045	2.02e-173	-	-	-	-	-	-	-	-
CLDPALIF_00046	4.52e-126	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
CLDPALIF_00047	4.28e-187	ykuT	-	-	M	ko:K16052,ko:K22044	-	ko00000,ko02000	mechanosensitive ion channel
CLDPALIF_00048	2.96e-23	ytxG	-	-	S	-	-	-	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
CLDPALIF_00049	3.09e-71	-	-	-	-	-	-	-	-
CLDPALIF_00050	5.91e-198	ecfA1	-	-	P	ko:K16786	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLDPALIF_00051	1.58e-201	ecfA2	-	-	P	ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLDPALIF_00052	1.53e-175	ecfT	-	-	U	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLDPALIF_00053	5.69e-190	truA	5.4.99.12	-	J	ko:K06173	-	ko00000,ko01000,ko03016	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
CLDPALIF_00054	3.22e-103	rplM	-	-	J	ko:K02871	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CLDPALIF_00055	3.94e-85	rpsI	-	-	J	ko:K02996	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS9 family
CLDPALIF_00056	1.44e-234	-	-	-	L	-	-	-	Phage integrase family
CLDPALIF_00057	4.64e-63	-	-	-	S	-	-	-	Domain of unknown function (DUF4811)
CLDPALIF_00058	0.0	ycnB	-	-	U	-	-	-	Belongs to the major facilitator superfamily
CLDPALIF_00059	7.65e-101	-	-	-	K	-	-	-	MerR HTH family regulatory protein
CLDPALIF_00060	1.43e-178	-	-	-	S	-	-	-	Cysteine-rich secretory protein family
CLDPALIF_00061	0.0	ycaM	-	-	E	-	-	-	amino acid
CLDPALIF_00062	0.0	-	-	-	-	-	-	-	-
CLDPALIF_00064	9.26e-241	cggR	-	-	K	ko:K05311	-	ko00000,ko03000	Putative sugar-binding domain
CLDPALIF_00065	2.86e-244	gap	1.2.1.12	-	G	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
CLDPALIF_00066	2.86e-286	pgk	2.7.2.3	-	F	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the phosphoglycerate kinase family
CLDPALIF_00067	5.46e-183	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
CLDPALIF_00068	1.18e-253	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
CLDPALIF_00069	3.07e-124	-	-	-	-	-	-	-	-
CLDPALIF_00070	2.81e-200	ycsE	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
CLDPALIF_00071	1.64e-174	ung	3.2.2.27	-	L	ko:K03648	ko03410,ko05340,map03410,map05340	ko00000,ko00001,ko01000,ko03400	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CLDPALIF_00072	1.1e-232	pta	2.3.1.8, 3.6.3.21	-	C	ko:K00625,ko:K02028	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000,ko02000	phosphate acetyltransferase
CLDPALIF_00073	4.82e-113	ydiB	-	-	O	ko:K06925	-	ko00000,ko03016	Hydrolase, P-loop family
CLDPALIF_00074	1.51e-127	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
CLDPALIF_00075	2.84e-208	murB	1.3.1.98	-	M	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation
CLDPALIF_00076	1.25e-263	potA	3.6.3.30, 3.6.3.31	-	P	ko:K02010,ko:K11072	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
CLDPALIF_00077	8.77e-173	potB	-	-	P	ko:K11071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLDPALIF_00078	3.69e-170	potC	-	-	P	ko:K11070	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLDPALIF_00079	3.46e-266	potD	-	-	P	ko:K11069	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLDPALIF_00080	2.13e-194	dacA	2.7.7.85	-	S	ko:K18672	-	ko00000,ko01000	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CLDPALIF_00081	2.76e-221	ybbR	-	-	S	-	-	-	YbbR-like protein
CLDPALIF_00082	0.0	glmM	5.4.2.10	-	G	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko01000	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CLDPALIF_00083	8.04e-190	-	-	-	S	-	-	-	hydrolase
CLDPALIF_00084	3.23e-98	copY	-	-	K	ko:K02171	ko01501,map01501	ko00000,ko00001,ko00002,ko01504,ko03000	Penicillinase repressor
CLDPALIF_00085	2.85e-153	-	-	-	-	-	-	-	-
CLDPALIF_00086	3.07e-112	ptpA	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLDPALIF_00087	2.52e-262	glxK	2.7.1.165	-	G	ko:K00865	ko00260,ko00561,ko00630,ko01100,ko01120,ko01130,map00260,map00561,map00630,map01100,map01120,map01130	ko00000,ko00001,ko01000	Belongs to the glycerate kinase type-1 family
CLDPALIF_00088	8.39e-195	bglG5	-	-	K	ko:K03488	-	ko00000,ko03000	CAT RNA binding domain
CLDPALIF_00089	0.0	pts33BCA	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
CLDPALIF_00090	0.0	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
CLDPALIF_00091	5.12e-199	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
CLDPALIF_00092	6.91e-118	-	-	-	T	-	-	-	Putative diguanylate phosphodiesterase
CLDPALIF_00093	2.21e-34	-	4.1.2.50, 4.2.3.12	-	H	ko:K01737	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000,ko03016	6-pyruvoyl tetrahydropterin synthase
CLDPALIF_00094	1.67e-136	icaA	-	-	M	-	-	-	Glycosyl transferase family group 2
CLDPALIF_00095	2.64e-46	-	-	-	-	-	-	-	-
CLDPALIF_00096	1.96e-110	-	2.7.7.65	-	T	ko:K02488	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko00002,ko01000,ko02022	GGDEF domain
CLDPALIF_00097	1.14e-99	-	-	-	M	-	-	-	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CLDPALIF_00099	0.0	-	-	-	E	-	-	-	Amino acid permease
CLDPALIF_00100	5.32e-42	-	-	-	-	ko:K18829	-	ko00000,ko02048	-
CLDPALIF_00101	4.02e-91	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	Toxin-antitoxin system, toxin component, MazF family
CLDPALIF_00102	1.14e-42	-	-	-	S	-	-	-	RloB-like protein
CLDPALIF_00103	0.0	hsdM	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	type I restriction-modification system
CLDPALIF_00104	2.57e-61	-	3.1.21.3	-	V	ko:K01154	-	ko00000,ko01000,ko02048	Type I restriction modification DNA specificity domain
CLDPALIF_00105	2.64e-49	hsdM	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	HsdM N-terminal domain
CLDPALIF_00106	4.81e-77	-	-	-	S	-	-	-	SIR2-like domain
CLDPALIF_00108	1.62e-278	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
CLDPALIF_00110	3.76e-316	chbC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLDPALIF_00111	5.96e-283	yfmL	-	-	L	-	-	-	DEAD DEAH box helicase
CLDPALIF_00112	2.16e-79	lys	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
CLDPALIF_00113	6.73e-78	lys	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
CLDPALIF_00114	9.46e-159	-	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	Serine dehydratase beta chain
CLDPALIF_00115	7.73e-199	sdaAA	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
CLDPALIF_00116	6.51e-69	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
CLDPALIF_00117	5.01e-150	dapE	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
CLDPALIF_00118	7.68e-63	dapE	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
CLDPALIF_00119	8.26e-309	lctO	1.13.12.4	-	C	ko:K00467,ko:K10530	ko00620,map00620	ko00000,ko00001,ko01000	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
CLDPALIF_00120	0.0	-	-	-	L	-	-	-	PLD-like domain
CLDPALIF_00121	5.97e-55	-	-	-	S	-	-	-	SnoaL-like domain
CLDPALIF_00122	6.13e-70	-	-	-	K	-	-	-	sequence-specific DNA binding
CLDPALIF_00123	8.71e-31	-	-	-	G	-	-	-	Ribose/Galactose Isomerase
CLDPALIF_00124	5.51e-35	-	-	-	-	-	-	-	-
CLDPALIF_00125	8.15e-29	int2	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLDPALIF_00127	4.97e-45	-	3.6.3.2, 3.6.3.6, 3.6.3.8	-	P	ko:K01531,ko:K01535,ko:K01537,ko:K12952	ko00190,map00190	ko00000,ko00001,ko01000	cation transport ATPase
CLDPALIF_00128	0.0	-	3.6.3.6	-	P	ko:K01535	ko00190,map00190	ko00000,ko00001,ko01000	Cation transporter/ATPase, N-terminus
CLDPALIF_00129	2.52e-06	-	-	-	D	-	-	-	Domain of Unknown Function (DUF1542)
CLDPALIF_00130	7e-131	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	sortase family
CLDPALIF_00131	0.0	recJ	-	-	L	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	ko00000,ko00001,ko01000,ko03400	Single-stranded-DNA-specific exonuclease RecJ
CLDPALIF_00132	1.15e-121	apt	2.4.2.7	-	F	ko:K00759	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000,ko04147	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CLDPALIF_00133	3.3e-203	-	3.6.4.12	-	K	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Putative ATP-dependent DNA helicase recG C-terminal
CLDPALIF_00134	7.13e-67	-	-	-	K	-	-	-	helix_turn_helix gluconate operon transcriptional repressor
CLDPALIF_00135	1.53e-189	-	5.2.1.13	-	Q	ko:K09835	ko00906,ko01100,ko01110,map00906,map01100,map01110	ko00000,ko00001,ko00002,ko01000	HI0933-like protein
CLDPALIF_00136	3.43e-79	-	-	-	C	-	-	-	2Fe-2S iron-sulfur cluster binding domain
CLDPALIF_00137	4.76e-168	ybbM	-	-	S	ko:K02069	-	ko00000,ko00002,ko02000	Uncharacterised protein family (UPF0014)
CLDPALIF_00138	1.29e-143	ybbL	-	-	S	ko:K02068	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_00139	0.0	-	-	-	S	-	-	-	SH3-like domain
CLDPALIF_00140	1.16e-128	clpP	3.4.21.92	-	O	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
CLDPALIF_00141	2.46e-220	whiA	-	-	K	ko:K09762	-	ko00000	May be required for sporulation
CLDPALIF_00142	2.78e-251	yvcK	-	-	S	-	-	-	Required for morphogenesis under gluconeogenic growth conditions
CLDPALIF_00143	2.44e-211	yvcJ	-	-	S	ko:K06958	-	ko00000,ko03019	Displays ATPase and GTPase activities
CLDPALIF_00144	1.55e-117	-	-	-	S	-	-	-	Short repeat of unknown function (DUF308)
CLDPALIF_00145	0.0	uvrA	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
CLDPALIF_00146	0.0	uvrB	-	-	L	ko:K03702	ko03420,map03420	ko00000,ko00001,ko03400	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
CLDPALIF_00147	0.0	pgm	5.4.2.2	-	G	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
CLDPALIF_00148	3.42e-232	trxB	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
CLDPALIF_00149	3.31e-239	gpsA	1.1.1.94	-	I	ko:K00057	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	Glycerol-3-phosphate dehydrogenase
CLDPALIF_00150	4.04e-203	lgt	-	-	M	ko:K13292	-	ko00000,ko01000	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CLDPALIF_00151	3.54e-230	hprK	-	-	F	ko:K06023	-	ko00000,ko01000	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CLDPALIF_00152	8.33e-27	-	-	-	-	-	-	-	-
CLDPALIF_00153	2.24e-238	prfB	-	-	J	ko:K02836	-	ko00000,ko03012	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CLDPALIF_00154	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
CLDPALIF_00155	1.55e-122	hpf	-	-	J	ko:K05808	-	ko00000,ko03009	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CLDPALIF_00156	9.44e-169	comFC	-	-	S	ko:K02242	-	ko00000,ko00002,ko02044	Competence protein
CLDPALIF_00157	2.68e-314	comFA	-	-	L	ko:K02240	-	ko00000,ko00002,ko02044	Helicase C-terminal domain protein
CLDPALIF_00158	5.04e-154	yvyE	3.4.13.9	-	S	ko:K01271	-	ko00000,ko01000,ko01002	YigZ family
CLDPALIF_00159	1.94e-268	tagO	2.7.8.33, 2.7.8.35	-	M	ko:K02851	-	ko00000,ko01000,ko01003,ko01005	transferase
CLDPALIF_00160	3.03e-293	rny	-	-	S	ko:K18682	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Endoribonuclease that initiates mRNA decay
CLDPALIF_00161	1.17e-248	recA	-	-	L	ko:K03553	ko03440,map03440	ko00000,ko00001,ko00002,ko03400	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CLDPALIF_00162	3.92e-123	pgsA	2.7.8.5	-	I	ko:K00995	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CLDPALIF_00163	1.63e-154	ymfM	-	-	S	ko:K15539	-	ko00000	Helix-turn-helix domain
CLDPALIF_00164	1.39e-171	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl-(Acyl carrier protein) reductase
CLDPALIF_00165	5.49e-301	ymfH	-	-	S	-	-	-	Peptidase M16
CLDPALIF_00166	2.96e-284	ymfF	-	-	S	-	-	-	Peptidase M16 inactive domain protein
CLDPALIF_00167	0.0	ftsK	-	-	D	ko:K03466	-	ko00000,ko03036	Belongs to the FtsK SpoIIIE SftA family
CLDPALIF_00168	3.12e-91	-	-	-	S	-	-	-	Protein of unknown function (DUF1149)
CLDPALIF_00169	2.12e-136	cspR	2.1.1.207	-	J	ko:K03216	-	ko00000,ko01000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
CLDPALIF_00170	2.19e-270	XK27_05220	-	-	S	-	-	-	AI-2E family transporter
CLDPALIF_00171	1.99e-87	srlB	2.7.1.198	-	G	ko:K02781	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system glucitol/sorbitol-specific IIA component
CLDPALIF_00172	1.01e-255	pgl	3.1.1.31	-	G	ko:K07404	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Lactonase, 7-bladed beta-propeller
CLDPALIF_00173	4.83e-107	ybbB	-	-	S	-	-	-	Protein of unknown function (DUF1211)
CLDPALIF_00174	1.53e-142	ltrA	-	-	S	-	-	-	Bacterial low temperature requirement A protein (LtrA)
CLDPALIF_00175	6.21e-153	yjhB	3.6.1.13	-	F	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	NUDIX domain
CLDPALIF_00176	4.01e-314	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
CLDPALIF_00177	8.26e-290	-	-	-	-	-	-	-	-
CLDPALIF_00178	7.7e-167	-	-	-	K	-	-	-	Probable Zinc-ribbon domain
CLDPALIF_00179	3.07e-149	-	-	-	L	-	-	-	Integrase
CLDPALIF_00180	0.0	qacA	-	-	EGP	-	-	-	Major Facilitator
CLDPALIF_00181	1.02e-115	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CLDPALIF_00182	3.34e-303	pyrP	-	-	F	ko:K02824	-	ko00000,ko02000	Permease
CLDPALIF_00183	3.55e-28	-	3.6.4.12	-	K	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Putative DNA-binding domain
CLDPALIF_00184	3.69e-54	-	-	-	L	ko:K07473	-	ko00000,ko02048	Addiction module antitoxin, RelB DinJ family
CLDPALIF_00185	5.05e-11	-	-	-	-	-	-	-	-
CLDPALIF_00186	3.58e-61	-	-	-	S	ko:K07124	-	ko00000	Enoyl-(Acyl carrier protein) reductase
CLDPALIF_00187	3.61e-121	yneE	-	-	K	-	-	-	Transcriptional regulator
CLDPALIF_00188	1.92e-80	yneE	-	-	K	-	-	-	Transcriptional regulator
CLDPALIF_00189	9.01e-287	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
CLDPALIF_00190	3.21e-175	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
CLDPALIF_00191	8.85e-121	-	-	-	M	-	-	-	LysM domain protein
CLDPALIF_00192	6.42e-110	-	-	-	C	-	-	-	Aldo keto reductase
CLDPALIF_00193	9.4e-232	lacX	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Aldose 1-epimerase
CLDPALIF_00194	0.0	dnaB	3.6.4.12	-	L	ko:K02314	ko03030,ko04112,map03030,map04112	ko00000,ko00001,ko01000,ko03032	Participates in initiation and elongation during chromosome replication
CLDPALIF_00195	3.87e-97	rplI	-	-	J	ko:K02939	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
CLDPALIF_00196	0.0	yybT	-	-	T	-	-	-	signaling protein consisting of a modified GGDEF domain and a DHH domain
CLDPALIF_00197	5.08e-75	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
CLDPALIF_00199	1.1e-54	-	-	-	K	-	-	-	Helix-turn-helix
CLDPALIF_00200	0.0	guaA	6.3.5.2	-	F	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the synthesis of GMP from XMP
CLDPALIF_00201	2.81e-121	-	2.1.1.72	-	L	ko:K07316	-	ko00000,ko01000,ko02048	DNA methylase
CLDPALIF_00202	1.01e-38	-	-	-	S	-	-	-	HicA toxin of bacterial toxin-antitoxin,
CLDPALIF_00203	2.27e-71	-	-	-	S	-	-	-	protein encoded in hypervariable junctions of pilus gene clusters
CLDPALIF_00204	7.26e-35	-	-	-	S	-	-	-	Protein conserved in bacteria
CLDPALIF_00205	1.09e-74	-	-	-	-	-	-	-	-
CLDPALIF_00206	6.77e-111	-	-	-	-	-	-	-	-
CLDPALIF_00207	1.27e-110	yheS_2	-	-	S	ko:K18231,ko:K19349	ko02010,map02010	br01600,ko00000,ko00001,ko01504,ko02000	ATPases associated with a variety of cellular activities
CLDPALIF_00208	3.39e-204	yheS_2	-	-	S	ko:K18231,ko:K19349	ko02010,map02010	br01600,ko00000,ko00001,ko01504,ko02000	ATPases associated with a variety of cellular activities
CLDPALIF_00209	1.84e-238	-	-	-	S	-	-	-	DUF218 domain
CLDPALIF_00210	9.07e-143	-	-	-	-	-	-	-	-
CLDPALIF_00211	1.32e-137	-	-	-	-	-	-	-	-
CLDPALIF_00212	3.75e-178	yicL	-	-	EG	-	-	-	EamA-like transporter family
CLDPALIF_00213	1.63e-206	-	-	-	EG	-	-	-	EamA-like transporter family
CLDPALIF_00214	4.48e-206	-	-	-	EG	-	-	-	EamA-like transporter family
CLDPALIF_00215	5.51e-47	-	-	-	-	-	-	-	-
CLDPALIF_00216	1.03e-07	-	-	-	-	-	-	-	-
CLDPALIF_00217	1.02e-200	-	-	-	-	-	-	-	-
CLDPALIF_00220	8.6e-108	-	-	-	M	-	-	-	NlpC/P60 family
CLDPALIF_00221	1.51e-168	cobQ	-	-	S	ko:K07009	-	ko00000	glutamine amidotransferase
CLDPALIF_00222	6.69e-84	-	-	-	L	-	-	-	RelB antitoxin
CLDPALIF_00223	1.83e-91	-	-	-	V	-	-	-	ABC transporter transmembrane region
CLDPALIF_00224	3.65e-285	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLDPALIF_00225	5.63e-171	-	-	-	V	-	-	-	ABC transporter transmembrane region
CLDPALIF_00226	1.74e-248	-	-	-	G	-	-	-	Transmembrane secretion effector
CLDPALIF_00227	3.66e-186	thiD	2.7.1.49, 2.7.4.7	-	H	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Phosphomethylpyrimidine kinase
CLDPALIF_00228	0.0	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CLDPALIF_00229	3.56e-186	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
CLDPALIF_00230	5.23e-229	yvdE	-	-	K	-	-	-	helix_turn _helix lactose operon repressor
CLDPALIF_00231	3.15e-259	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CLDPALIF_00232	1.44e-99	XK27_04775	-	-	S	ko:K09155	-	ko00000	PAS domain
CLDPALIF_00233	0.0	malA1	3.2.1.10, 3.2.1.20	GH13,GH31	G	ko:K01182,ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain
CLDPALIF_00234	0.0	nplT	3.2.1.133, 3.2.1.135, 3.2.1.54	GH13	G	ko:K01208	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 13 family
CLDPALIF_00235	0.0	mapA	2.4.1.8	GH65	G	ko:K00691	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	hydrolase, family 65, central catalytic
CLDPALIF_00236	9.37e-150	pgmB	5.4.2.6	-	S	ko:K01838	ko00500,map00500	ko00000,ko00001,ko01000	beta-phosphoglucomutase
CLDPALIF_00237	2.85e-266	msmX	-	-	P	ko:K10112	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
CLDPALIF_00238	2.73e-282	-	-	-	G	ko:K15770	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
CLDPALIF_00239	0.0	malF	-	-	P	ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
CLDPALIF_00240	1.39e-197	malG	-	-	P	ko:K15772	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLDPALIF_00241	4.73e-84	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLDPALIF_00245	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
CLDPALIF_00246	1.73e-79	-	-	-	S	ko:K08987	-	ko00000	Protein of unknown function (DUF1304)
CLDPALIF_00247	1.45e-36	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
CLDPALIF_00248	1.32e-171	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
CLDPALIF_00249	4.95e-164	citG	2.4.2.52	-	H	ko:K05966	ko02020,map02020	ko00000,ko00001,ko01000	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
CLDPALIF_00250	4.77e-248	-	-	-	I	-	-	-	transferase activity, transferring acyl groups other than amino-acyl groups
CLDPALIF_00251	1.28e-226	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLDPALIF_00252	1.86e-91	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
CLDPALIF_00253	2.3e-169	-	-	-	K	ko:K03492	-	ko00000,ko03000	UTRA
CLDPALIF_00254	0.0	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
CLDPALIF_00255	2.73e-92	-	-	-	S	-	-	-	Domain of unknown function (DUF3284)
CLDPALIF_00256	1.64e-215	celD	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLDPALIF_00259	2.14e-103	-	-	-	-	-	-	-	-
CLDPALIF_00260	2.33e-230	pepA	-	-	E	-	-	-	M42 glutamyl aminopeptidase
CLDPALIF_00261	0.0	ykpA	-	-	S	-	-	-	ABC transporter, ATP-binding protein
CLDPALIF_00262	6.07e-223	ydhF	-	-	S	-	-	-	Aldo keto reductase
CLDPALIF_00263	1.94e-130	-	-	-	I	-	-	-	PAP2 superfamily
CLDPALIF_00264	1.23e-187	-	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
CLDPALIF_00265	1.43e-310	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
CLDPALIF_00266	3.73e-72	-	-	-	S	-	-	-	Domain of unknown function (DUF4767)
CLDPALIF_00267	1.64e-19	-	-	-	-	-	-	-	-
CLDPALIF_00271	8.83e-170	-	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
CLDPALIF_00272	2.08e-164	-	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
CLDPALIF_00273	0.0	comA	-	-	V	ko:K06147,ko:K06148,ko:K12292,ko:K20344	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko01000,ko02000	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
CLDPALIF_00274	1.5e-93	cas9	-	-	L	ko:K09952	-	ko00000,ko01000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
CLDPALIF_00275	2.47e-104	cas9	-	-	L	ko:K09952	-	ko00000,ko01000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
CLDPALIF_00276	1.44e-164	cas1	-	-	L	ko:K15342	-	ko00000,ko02048,ko03400	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CLDPALIF_00277	4.67e-54	cas2	-	-	L	ko:K09951	-	ko00000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CLDPALIF_00278	9.07e-51	-	-	-	S	-	-	-	CRISPR-associated protein (Cas_Csn2)
CLDPALIF_00279	0.0	phoR	2.7.13.3	-	T	ko:K07636	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
CLDPALIF_00280	7.72e-156	phoB	-	-	T	ko:K07658	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	Transcriptional regulatory protein, C terminal
CLDPALIF_00281	6.07e-138	-	-	-	P	ko:K02039	-	ko00000	Plays a role in the regulation of phosphate uptake
CLDPALIF_00282	4.66e-179	pstB	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
CLDPALIF_00283	8.63e-195	pstA	-	-	P	ko:K02038	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphate transport system permease protein PstA
CLDPALIF_00284	8.73e-205	pstC	-	-	P	ko:K02037	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	probably responsible for the translocation of the substrate across the membrane
CLDPALIF_00285	9.14e-187	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
CLDPALIF_00286	4.84e-42	-	-	-	-	-	-	-	-
CLDPALIF_00287	3.11e-256	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
CLDPALIF_00288	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
CLDPALIF_00289	0.0	leuS	6.1.1.4	-	J	ko:K01869	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Belongs to the class-I aminoacyl-tRNA synthetase family
CLDPALIF_00290	1.39e-156	yodM	3.6.1.27	-	I	ko:K19302	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	Acid phosphatase homologues
CLDPALIF_00291	6.75e-216	-	-	-	K	-	-	-	LysR substrate binding domain
CLDPALIF_00292	9.32e-109	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLDPALIF_00293	1.41e-51	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
CLDPALIF_00294	3.01e-294	yumB	1.6.99.3	-	C	ko:K03885	ko00190,map00190	ko00000,ko00001,ko01000	NADH dehydrogenase
CLDPALIF_00295	1.03e-206	menA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	1,4-dihydroxy-2-naphthoate
CLDPALIF_00296	1.38e-226	hepT	2.5.1.30	-	H	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
CLDPALIF_00297	1.76e-165	menG	2.1.1.163, 2.1.1.201	-	H	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
CLDPALIF_00298	0.0	cydD	-	-	CO	ko:K16012	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CLDPALIF_00299	0.0	cydC	-	-	CO	ko:K16013	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydD
CLDPALIF_00300	9.83e-236	cydB	1.10.3.14	-	C	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	Cytochrome d ubiquinol oxidase subunit II
CLDPALIF_00301	0.0	cydA	1.10.3.14	-	C	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	ubiquinol oxidase
CLDPALIF_00302	3.75e-168	-	-	-	K	-	-	-	rpiR family
CLDPALIF_00303	7.66e-248	-	-	-	S	ko:K09963	-	ko00000	Bacterial protein of unknown function (DUF871)
CLDPALIF_00304	1.81e-270	-	2.7.1.211	-	G	ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
CLDPALIF_00305	1.32e-151	-	-	-	S	-	-	-	Putative esterase
CLDPALIF_00306	3.39e-154	murQ	4.2.1.126	-	G	ko:K07106	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
CLDPALIF_00307	1.92e-102	-	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
CLDPALIF_00309	0.0	mdr	-	-	EGP	-	-	-	Major Facilitator
CLDPALIF_00310	7.29e-287	metK	2.5.1.6	-	H	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CLDPALIF_00313	5.31e-211	-	-	-	P	ko:K02077	-	ko00000,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
CLDPALIF_00316	2.33e-19	sagB	-	-	C	-	-	-	Nitroreductase family
CLDPALIF_00318	8.25e-65	-	-	-	V	ko:K01990,ko:K01992	-	ko00000,ko00002,ko02000	Transport permease protein
CLDPALIF_00319	9.75e-80	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
CLDPALIF_00321	2.92e-166	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLDPALIF_00322	4.02e-11	-	-	-	-	-	-	-	-
CLDPALIF_00323	1.02e-75	-	-	-	-	-	-	-	-
CLDPALIF_00324	2.62e-69	-	-	-	-	-	-	-	-
CLDPALIF_00326	4.4e-165	-	-	-	S	-	-	-	PAS domain
CLDPALIF_00327	1.98e-122	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
CLDPALIF_00329	1.28e-162	sagD	-	-	S	-	-	-	YcaO cyclodehydratase, ATP-ad Mg2+-binding
CLDPALIF_00331	1.51e-42	sagB	-	-	C	-	-	-	coenzyme F420-1:gamma-L-glutamate ligase activity
CLDPALIF_00332	2.25e-137	ribE	2.5.1.9	-	H	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Riboflavin synthase
CLDPALIF_00333	6.44e-257	ribD	1.1.1.193, 3.5.4.26	-	H	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	ko00000,ko00001,ko00002,ko01000	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CLDPALIF_00334	5.75e-152	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
CLDPALIF_00335	6.91e-67	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLDPALIF_00336	1.84e-163	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_00337	1.43e-119	-	-	-	-	-	-	-	-
CLDPALIF_00339	4.07e-158	-	-	-	M	ko:K14193	ko05150,map05150	ko00000,ko00001	Iron Transport-associated domain
CLDPALIF_00340	2.07e-203	isdE	-	-	P	ko:K02016	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Periplasmic binding protein
CLDPALIF_00341	2.2e-201	isdF	-	-	U	ko:K02015	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLDPALIF_00342	1.49e-178	-	3.6.3.34	-	HP	ko:K02013	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	abc transporter atp-binding protein
CLDPALIF_00343	2.22e-60	hupB2	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
CLDPALIF_00344	2.74e-69	-	-	-	S	ko:K19157	-	ko00000,ko01000,ko02048	Bacterial toxin of type II toxin-antitoxin system, YafQ
CLDPALIF_00345	9.43e-52	-	-	-	S	ko:K07473	-	ko00000,ko02048	RelB antitoxin
CLDPALIF_00346	7.04e-218	-	-	-	G	-	-	-	BadF/BadG/BcrA/BcrD ATPase family
CLDPALIF_00347	0.0	-	-	-	S	-	-	-	membrane
CLDPALIF_00348	0.0	pbp2b	-	-	M	ko:K00687,ko:K12553,ko:K21465,ko:K21466	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
CLDPALIF_00349	6.25e-29	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
CLDPALIF_00350	7.92e-126	fthC	6.3.3.2	-	H	ko:K01934	ko00670,ko01100,map00670,map01100	ko00000,ko00001,ko01000	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CLDPALIF_00351	3.25e-154	gluP	3.4.21.105	-	S	ko:K19225	-	ko00000,ko01000,ko01002	Rhomboid family
CLDPALIF_00352	1e-47	yqgQ	-	-	S	-	-	-	Bacterial protein of unknown function (DUF910)
CLDPALIF_00353	4.95e-89	yqhL	-	-	P	-	-	-	Rhodanese-like protein
CLDPALIF_00354	3.84e-216	miaA	2.5.1.75	-	F	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	ko00000,ko00001,ko01000,ko01006,ko03016	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CLDPALIF_00355	2.05e-286	ynbB	-	-	P	-	-	-	aluminum resistance
CLDPALIF_00356	0.0	glnA	6.3.1.2	-	E	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	ko00000,ko00001,ko01000,ko04147	glutamine synthetase
CLDPALIF_00357	2.37e-219	-	-	-	-	-	-	-	-
CLDPALIF_00358	2.09e-205	-	-	-	-	-	-	-	-
CLDPALIF_00362	6.78e-47	-	-	-	-	-	-	-	-
CLDPALIF_00363	1.94e-165	-	-	-	S	-	-	-	interspecies interaction between organisms
CLDPALIF_00364	1.28e-09	-	-	-	S	-	-	-	PFAM HicB family
CLDPALIF_00365	2.86e-13	-	-	-	K	ko:K15773	-	ko00000,ko02048,ko03000	peptidyl-tyrosine sulfation
CLDPALIF_00366	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
CLDPALIF_00367	1.57e-84	-	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
CLDPALIF_00368	2.65e-154	nanA	4.1.3.3	-	EM	ko:K01639	ko00520,map00520	ko00000,ko00001,ko01000	Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate
CLDPALIF_00369	1.03e-112	nanK	-	-	GK	-	-	-	ROK family
CLDPALIF_00370	3.74e-70	-	-	-	G	-	-	-	Xylose isomerase domain protein TIM barrel
CLDPALIF_00371	1.48e-166	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
CLDPALIF_00372	6.48e-279	-	-	-	E	ko:K03307	-	ko00000	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CLDPALIF_00373	1.87e-130	cah	3.1.1.41	-	Q	ko:K01060	ko00311,ko01130,map00311,map01130	ko00000,ko00001,ko01000	Acetyl xylan esterase (AXE1)
CLDPALIF_00374	6.9e-141	nanE	5.1.3.9	-	G	ko:K01788	ko00520,map00520	ko00000,ko00001,ko01000	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
CLDPALIF_00375	2.58e-13	nagA	3.5.1.25	-	G	ko:K01443	ko00520,ko01130,map00520,map01130	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CLDPALIF_00376	1.59e-108	nagA	3.5.1.25	-	G	ko:K01443	ko00520,ko01130,map00520,map01130	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CLDPALIF_00378	8.06e-64	-	-	-	K	ko:K07726	-	ko00000,ko03000	Helix-turn-helix XRE-family like proteins
CLDPALIF_00379	1.66e-84	-	-	-	S	-	-	-	RelE toxin of RelE / RelB toxin-antitoxin system
CLDPALIF_00380	4.57e-268	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
CLDPALIF_00381	3.82e-294	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
CLDPALIF_00382	3.31e-154	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
CLDPALIF_00383	1.64e-45	-	-	-	-	-	-	-	-
CLDPALIF_00384	2.26e-110	-	3.4.21.92	-	OU	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S14 family
CLDPALIF_00385	3.17e-169	-	-	-	S	-	-	-	Phage portal protein
CLDPALIF_00387	3.49e-50	-	-	-	-	-	-	-	-
CLDPALIF_00388	1.76e-233	prs2	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CLDPALIF_00389	8.37e-161	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
CLDPALIF_00390	1.11e-177	-	-	-	-	-	-	-	-
CLDPALIF_00391	0.0	glnPH2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
CLDPALIF_00392	1.01e-170	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_00393	7.36e-291	-	-	-	S	-	-	-	Cysteine-rich secretory protein family
CLDPALIF_00394	2.43e-263	ddl	6.3.2.4	-	F	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Belongs to the D-alanine--D-alanine ligase family
CLDPALIF_00395	4.23e-165	-	-	-	-	-	-	-	-
CLDPALIF_00396	1.69e-258	yibE	-	-	S	-	-	-	overlaps another CDS with the same product name
CLDPALIF_00397	7.8e-167	yibF	-	-	S	-	-	-	overlaps another CDS with the same product name
CLDPALIF_00398	1.2e-202	-	-	-	I	-	-	-	alpha/beta hydrolase fold
CLDPALIF_00399	0.0	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 31 family
CLDPALIF_00400	1.03e-275	nagA	3.5.1.25	-	G	ko:K01443	ko00520,ko01130,map00520,map01130	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CLDPALIF_00401	3.47e-19	-	-	-	-	ko:K07473	-	ko00000,ko02048	-
CLDPALIF_00403	4.83e-117	ntd	2.4.2.6	-	F	ko:K08728	ko00240,map00240	ko00000,ko00001,ko01000	Nucleoside
CLDPALIF_00404	6.51e-114	-	2.7.1.200, 2.7.1.204	-	G	ko:K02773,ko:K20112	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CLDPALIF_00405	1.02e-190	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
CLDPALIF_00406	3.92e-110	usp5	-	-	T	-	-	-	universal stress protein
CLDPALIF_00408	1.78e-212	phnD	-	-	P	ko:K02044	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphonate ABC transporter
CLDPALIF_00409	6.34e-180	phnC	3.6.3.28	-	P	ko:K02041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
CLDPALIF_00410	4.7e-169	phnB	-	-	P	ko:K02042	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
CLDPALIF_00411	1.29e-190	-	-	-	P	ko:K02042	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
CLDPALIF_00412	0.0	-	-	-	L	-	-	-	COG3385 FOG Transposase and inactivated derivatives
CLDPALIF_00413	5.61e-138	tag	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	glycosylase
CLDPALIF_00414	2.47e-107	-	-	-	-	-	-	-	-
CLDPALIF_00415	0.0	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
CLDPALIF_00416	0.0	asnB	6.3.5.4	-	E	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	ko00000,ko00001,ko01000,ko01002	Asparagine synthase
CLDPALIF_00417	0.0	yxbA	6.3.1.12	-	S	ko:K17810	-	ko00000,ko01000	ATP-grasp enzyme
CLDPALIF_00418	0.0	nrdD	1.1.98.6	-	F	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Ribonucleoside-triphosphate reductase
CLDPALIF_00419	1.35e-180	nrdG	1.97.1.4	-	O	ko:K04068	-	ko00000,ko01000	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CLDPALIF_00420	3.41e-132	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
CLDPALIF_00421	2.19e-292	XK27_04775	-	-	S	ko:K09155	-	ko00000	PAS domain
CLDPALIF_00423	1.23e-175	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
CLDPALIF_00424	2.24e-71	ykoJ	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
CLDPALIF_00425	8.41e-42	adh2	1.1.1.1	-	E	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	alcohol dehydrogenase
CLDPALIF_00426	2.86e-169	-	-	-	L	-	-	-	Transposase and inactivated derivatives
CLDPALIF_00428	3.31e-65	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLDPALIF_00430	1.21e-207	rluA	5.4.99.23, 5.4.99.28, 5.4.99.29	-	J	ko:K06177,ko:K06180	-	ko00000,ko01000,ko03009,ko03016	Responsible for synthesis of pseudouridine from uracil
CLDPALIF_00431	0.0	pbp2A	2.4.1.129, 3.4.16.4	GT51	M	ko:K12555	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein
CLDPALIF_00432	8.43e-73	yheA	-	-	S	-	-	-	Belongs to the UPF0342 family
CLDPALIF_00433	4.24e-289	yhaO	-	-	L	ko:K03547	-	ko00000,ko03400	Ser Thr phosphatase family protein
CLDPALIF_00434	0.0	yhaN	-	-	L	-	-	-	AAA domain
CLDPALIF_00435	4.53e-239	yhaM	-	-	S	ko:K03698	-	ko00000,ko01000,ko03019	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLDPALIF_00437	9.67e-33	-	-	-	S	-	-	-	Domain of unknown function DUF1829
CLDPALIF_00438	0.0	-	-	-	-	-	-	-	-
CLDPALIF_00439	5.74e-96	eda	4.1.2.14, 4.1.3.42	-	G	ko:K01625	ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	KDPG and KHG aldolase
CLDPALIF_00440	3.12e-196	prsA	5.2.1.8	-	M	ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
CLDPALIF_00441	1.2e-41	-	-	-	-	-	-	-	-
CLDPALIF_00442	1.61e-101	hit	-	-	FG	ko:K02503	-	ko00000,ko04147	Scavenger mRNA decapping enzyme C-term binding
CLDPALIF_00443	3.67e-174	ecsA	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_00444	1.63e-281	ecsB	-	-	U	ko:K01992	-	ko00000,ko00002,ko02000	ABC transporter
CLDPALIF_00445	2.16e-163	trmB	2.1.1.33	-	J	ko:K03439	-	ko00000,ko01000,ko03016	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
CLDPALIF_00447	1.35e-71	ytpP	-	-	CO	-	-	-	Thioredoxin
CLDPALIF_00448	1.28e-156	XK27_10290	-	-	J	ko:K06878	-	ko00000	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
CLDPALIF_00449	2.59e-313	murC	6.3.2.8	-	M	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Belongs to the MurCDEF family
CLDPALIF_00450	4.65e-278	mepA	-	-	V	ko:K18908	-	ko00000,ko00002,ko01504,ko02000	MATE efflux family protein
CLDPALIF_00451	2.04e-226	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_00452	0.0	-	-	-	M	-	-	-	Peptidase family M1 domain
CLDPALIF_00453	2.43e-239	-	-	-	S	-	-	-	Bacteriocin helveticin-J
CLDPALIF_00454	1.33e-67	-	-	-	L	ko:K07473	-	ko00000,ko02048	RelB antitoxin
CLDPALIF_00455	2.53e-139	hflC	-	-	O	ko:K04087	-	ko00000,ko00002,ko01000	prohibitin homologues
CLDPALIF_00456	1.98e-35	hflC	-	-	O	ko:K04087	-	ko00000,ko00002,ko01000	prohibitin homologues
CLDPALIF_00457	0.0	polA	2.7.7.7	-	L	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	ko00000,ko00001,ko01000,ko03032,ko03400	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLDPALIF_00458	7.81e-199	fpg	3.2.2.23, 4.2.99.18	-	L	ko:K10563	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
CLDPALIF_00459	2.16e-136	coaE	2.7.1.24	-	F	ko:K00859	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CLDPALIF_00460	1.29e-106	nrdR	-	-	K	ko:K07738	-	ko00000,ko03000	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CLDPALIF_00461	0.0	dnaB2	-	-	L	ko:K03346	-	ko00000,ko03032	Replication initiation and membrane attachment
CLDPALIF_00462	1.31e-215	dnaI	-	-	L	ko:K11144	-	ko00000,ko03032	Primosomal protein DnaI
CLDPALIF_00463	0.0	thrS	6.1.1.3	-	J	ko:K01868	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CLDPALIF_00464	5.59e-98	-	-	-	-	-	-	-	-
CLDPALIF_00479	2.16e-193	-	2.3.1.81	-	V	ko:K00662	-	ko00000,ko01000,ko01504	Aminoglycoside 3-N-acetyltransferase
CLDPALIF_00480	6.64e-185	-	-	-	F	-	-	-	Phosphorylase superfamily
CLDPALIF_00481	1.05e-176	-	-	-	F	-	-	-	Phosphorylase superfamily
CLDPALIF_00482	1.93e-100	-	-	-	S	-	-	-	helix_turn_helix, Deoxyribose operon repressor
CLDPALIF_00483	6.72e-177	-	-	-	EP	-	-	-	Plasmid replication protein
CLDPALIF_00484	4.63e-32	-	-	-	-	-	-	-	-
CLDPALIF_00485	0.0	rnjA	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLDPALIF_00486	5.22e-45	ykzG	-	-	S	-	-	-	Belongs to the UPF0356 family
CLDPALIF_00487	2.79e-131	def	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
CLDPALIF_00488	0.0	typA	-	-	T	ko:K06207	-	ko00000	GTP-binding protein TypA
CLDPALIF_00489	3.91e-268	ftsW	-	-	D	ko:K03588	ko04112,map04112	ko00000,ko00001,ko02000,ko03036	Belongs to the SEDS family
CLDPALIF_00490	9.94e-71	ylbG	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2129)
CLDPALIF_00491	5.21e-126	rsmD	2.1.1.171	-	L	ko:K08316	-	ko00000,ko01000,ko03009	RNA methyltransferase, RsmD family
CLDPALIF_00492	7.07e-107	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CLDPALIF_00493	1.42e-244	lon	-	-	T	ko:K07177	ko02024,map02024	ko00000,ko00001,ko01002	Belongs to the peptidase S16 family
CLDPALIF_00494	2.7e-126	comEA	-	-	L	ko:K02237	-	ko00000,ko00002,ko02044	Competence protein ComEA
CLDPALIF_00495	0.0	comEC	-	-	S	ko:K02238	-	ko00000,ko00002,ko02044	Competence protein ComEC
CLDPALIF_00496	2.57e-226	holA	2.7.7.7	-	L	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III delta subunit
CLDPALIF_00497	3.64e-46	rpsT	-	-	J	ko:K02968	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 16S ribosomal RNA
CLDPALIF_00498	7.11e-57	rpsO	-	-	J	ko:K02956	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CLDPALIF_00499	0.0	rnjB	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLDPALIF_00500	5.43e-191	-	-	-	-	-	-	-	-
CLDPALIF_00501	5.76e-287	tuf	-	-	J	ko:K02358,ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03012,ko03029,ko04147	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CLDPALIF_00502	2.56e-291	tig	-	-	D	ko:K03545	-	ko00000	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
CLDPALIF_00503	3.04e-297	clpX	-	-	O	ko:K03544	ko04112,map04112	ko00000,ko00001,ko03110	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CLDPALIF_00504	1.59e-136	engB	-	-	D	ko:K03978	-	ko00000,ko03036	Necessary for normal cell division and for the maintenance of normal septation
CLDPALIF_00505	2.58e-48	potE	-	-	E	-	-	-	Amino Acid
CLDPALIF_00506	1.27e-220	potE	-	-	E	-	-	-	Amino Acid
CLDPALIF_00507	6.25e-246	dapF	5.1.1.7	-	E	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CLDPALIF_00508	0.0	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
CLDPALIF_00509	1.39e-312	lysA	4.1.1.20	-	E	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
CLDPALIF_00510	8.62e-105	dapH	2.3.1.117, 2.3.1.89	-	E	ko:K00674,ko:K05822	ko00300,ko01100,ko01110,ko01120,ko01230,map00300,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
CLDPALIF_00511	3.29e-280	hipO	3.5.1.47	-	E	ko:K05823	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
CLDPALIF_00512	3.66e-225	dapA	4.3.3.7	-	E	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLDPALIF_00513	6.89e-185	dapB	1.17.1.8	-	E	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
CLDPALIF_00514	9.03e-277	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLDPALIF_00515	2.48e-252	asd	1.2.1.11	-	E	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CLDPALIF_00516	4.2e-249	pbpX1	-	-	V	-	-	-	Beta-lactamase
CLDPALIF_00517	0.0	-	-	-	I	-	-	-	Protein of unknown function (DUF2974)
CLDPALIF_00518	0.0	cas9	-	-	L	ko:K09952	-	ko00000,ko01000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
CLDPALIF_00519	0.0	gabD	1.2.1.16, 1.2.1.20, 1.2.1.79	-	C	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Belongs to the aldehyde dehydrogenase family
CLDPALIF_00520	2.35e-117	-	-	-	F	-	-	-	Nucleoside 2-deoxyribosyltransferase
CLDPALIF_00521	1.41e-37	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
CLDPALIF_00522	1.28e-292	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
CLDPALIF_00523	8.73e-187	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
CLDPALIF_00525	9.92e-152	cps3J	-	-	M	-	-	-	Domain of unknown function (DUF4422)
CLDPALIF_00526	2.91e-140	epsE2	-	-	M	-	-	-	Bacterial sugar transferase
CLDPALIF_00527	2.22e-184	ywqE	3.1.3.48	-	GM	ko:K01104	-	ko00000,ko01000	PHP domain protein
CLDPALIF_00528	5.61e-160	ywqD	-	-	D	-	-	-	Capsular exopolysaccharide family
CLDPALIF_00529	5.52e-187	epsB	-	-	M	-	-	-	biosynthesis protein
CLDPALIF_00530	8.14e-241	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
CLDPALIF_00532	6.72e-285	hflX	-	-	S	ko:K03665	-	ko00000,ko03009	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CLDPALIF_00533	1.26e-223	-	-	-	S	-	-	-	Cysteine-rich secretory protein family
CLDPALIF_00534	3.01e-54	-	-	-	-	-	-	-	-
CLDPALIF_00535	1.73e-167	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC/P60 family
CLDPALIF_00536	1.28e-174	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC P60 family protein
CLDPALIF_00537	1.47e-114	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC/P60 family
CLDPALIF_00538	4.26e-115	gmk2	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Guanylate kinase homologues.
CLDPALIF_00539	4.52e-56	-	-	-	-	-	-	-	-
CLDPALIF_00540	0.0	-	-	-	S	-	-	-	O-antigen ligase like membrane protein
CLDPALIF_00541	8.77e-144	-	-	-	-	-	-	-	-
CLDPALIF_00542	5.48e-283	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
CLDPALIF_00543	4.75e-101	nrdI	-	-	F	ko:K03647	-	ko00000	NrdI Flavodoxin like
CLDPALIF_00544	1.96e-226	nrdF	1.17.4.1	-	F	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLDPALIF_00545	1.16e-101	-	-	-	-	-	-	-	-
CLDPALIF_00546	1.58e-143	-	-	-	S	-	-	-	Peptidase_C39 like family
CLDPALIF_00547	7.36e-109	-	-	-	S	-	-	-	Threonine/Serine exporter, ThrE
CLDPALIF_00548	7.35e-174	-	-	-	S	-	-	-	Putative threonine/serine exporter
CLDPALIF_00549	0.0	-	-	-	S	-	-	-	ABC transporter
CLDPALIF_00550	2.52e-76	-	-	-	-	-	-	-	-
CLDPALIF_00551	8.69e-93	rimL	-	-	J	ko:K03817	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
CLDPALIF_00552	5.49e-46	-	-	-	-	-	-	-	-
CLDPALIF_00553	7.2e-40	-	-	-	-	-	-	-	-
CLDPALIF_00554	2.33e-143	-	-	-	S	ko:K07150	-	ko00000	Protein of unknown function (DUF554)
CLDPALIF_00555	5.74e-256	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
CLDPALIF_00556	0.0	pepF	-	-	E	ko:K08602	-	ko00000,ko01000,ko01002	oligoendopeptidase F
CLDPALIF_00557	7.27e-42	-	-	-	-	-	-	-	-
CLDPALIF_00558	1.47e-91	doc	-	-	S	ko:K07341	-	ko00000,ko02048	Prophage maintenance system killer protein
CLDPALIF_00561	4.61e-37	-	-	-	S	-	-	-	Enterocin A Immunity
CLDPALIF_00563	0.0	pps	2.7.9.2	-	H	ko:K01007	ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate
CLDPALIF_00564	2.14e-234	scrR	-	-	K	ko:K03484	-	ko00000,ko03000	helix_turn _helix lactose operon repressor
CLDPALIF_00565	0.0	scrB	3.2.1.26	GH32	G	ko:K01193	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	invertase
CLDPALIF_00566	0.0	scrA	2.7.1.211	-	G	ko:K02808,ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
CLDPALIF_00567	2.14e-231	-	-	-	M	-	-	-	CHAP domain
CLDPALIF_00568	2.79e-102	-	-	-	-	-	-	-	-
CLDPALIF_00569	1.06e-58	groS	-	-	O	ko:K04078	-	ko00000,ko03029,ko03110	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CLDPALIF_00570	0.0	groL	-	-	O	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
CLDPALIF_00571	0.0	mutS	-	-	L	ko:K03555	ko03430,map03430	ko00000,ko00001,ko03400	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CLDPALIF_00572	0.0	mutL	-	-	L	ko:K03572	ko03430,map03430	ko00000,ko00001,ko03400	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CLDPALIF_00573	3.89e-132	ruvA	3.6.4.12	-	L	ko:K03550	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
CLDPALIF_00574	1.39e-237	ruvB	3.6.4.12	-	L	ko:K03551	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
CLDPALIF_00575	7.58e-69	yajC	-	-	U	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
CLDPALIF_00576	0.0	zwf	1.1.1.363, 1.1.1.49	-	G	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CLDPALIF_00577	1.74e-274	dinB	2.7.7.7	-	L	ko:K02346	-	ko00000,ko01000,ko03400	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CLDPALIF_00578	3.16e-231	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHHA1 domain protein
CLDPALIF_00579	1.26e-303	cshB	3.6.4.13	-	JKL	ko:K05592,ko:K18692	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
CLDPALIF_00580	0.0	alaS	6.1.1.7	-	J	ko:K01872	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CLDPALIF_00581	5.32e-57	yrzL	-	-	S	-	-	-	Belongs to the UPF0297 family
CLDPALIF_00582	9.37e-96	yrrK	-	-	J	ko:K07447	-	ko00000,ko01000	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CLDPALIF_00583	1.18e-66	yrzB	-	-	S	-	-	-	Belongs to the UPF0473 family
CLDPALIF_00584	0.0	mutS2	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
CLDPALIF_00585	5.37e-72	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
CLDPALIF_00586	2.34e-76	mscL	-	-	M	ko:K03282	-	ko00000,ko02000	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
CLDPALIF_00587	5.62e-95	yslB	-	-	S	-	-	-	Protein of unknown function (DUF2507)
CLDPALIF_00588	4.13e-186	murI	3.6.1.66, 5.1.1.3	-	M	ko:K01776,ko:K02428	ko00230,ko00471,ko01100,map00230,map00471,map01100	ko00000,ko00001,ko01000,ko01011	Provides the (R)-glutamate required for cell wall biosynthesis
CLDPALIF_00589	8.12e-144	rdgB	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CLDPALIF_00590	1.55e-29	-	-	-	-	-	-	-	-
CLDPALIF_00591	2.33e-120	-	-	-	S	-	-	-	VanZ like family
CLDPALIF_00592	5.65e-171	yebC	-	-	K	-	-	-	Transcriptional regulatory protein
CLDPALIF_00593	5.04e-231	comGA	-	-	NU	ko:K02243	-	ko00000,ko00002,ko02044	Type II IV secretion system protein
CLDPALIF_00594	1.72e-222	comGB	-	-	NU	ko:K02244	-	ko00000,ko00002,ko02044	type II secretion system
CLDPALIF_00595	7.88e-63	comGC	-	-	U	ko:K02245	-	ko00000,ko00002,ko02044	competence protein ComGC
CLDPALIF_00596	8.19e-91	-	-	-	-	ko:K02246	-	ko00000,ko00002,ko02044	-
CLDPALIF_00597	1.68e-55	-	-	-	-	-	-	-	-
CLDPALIF_00598	1.94e-100	-	-	-	U	ko:K02248	-	ko00000,ko00002,ko02044	Putative Competence protein ComGF
CLDPALIF_00599	3.69e-30	-	-	-	-	-	-	-	-
CLDPALIF_00600	2.42e-238	ytxK	2.1.1.72	-	L	ko:K00571	-	ko00000,ko01000,ko02048	N-6 DNA Methylase
CLDPALIF_00601	1.07e-281	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CLDPALIF_00603	3e-128	-	-	-	M	-	-	-	Protein of unknown function (DUF3737)
CLDPALIF_00604	1.72e-288	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase, class I
CLDPALIF_00605	1.93e-242	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase
CLDPALIF_00606	9.01e-90	-	-	-	S	-	-	-	SdpI/YhfL protein family
CLDPALIF_00607	4.96e-167	-	-	-	K	-	-	-	Transcriptional regulatory protein, C terminal
CLDPALIF_00608	0.0	yclK	-	-	T	-	-	-	Histidine kinase
CLDPALIF_00609	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
CLDPALIF_00610	5.3e-137	vanZ	-	-	V	-	-	-	VanZ like family
CLDPALIF_00611	0.0	pgi	5.3.1.9	-	G	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the GPI family
CLDPALIF_00612	1.33e-273	-	-	-	EGP	-	-	-	Major Facilitator
CLDPALIF_00613	7.95e-250	ampC	-	-	V	-	-	-	Beta-lactamase
CLDPALIF_00616	0.0	murE2	6.3.2.13	-	M	ko:K01928	ko00300,ko00550,map00300,map00550	ko00000,ko00001,ko01000,ko01011	Domain of unknown function (DUF1727)
CLDPALIF_00617	7.02e-146	tdk	2.7.1.21	-	F	ko:K00857	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	thymidine kinase
CLDPALIF_00618	6.6e-237	prfA	-	-	J	ko:K02835	-	ko00000,ko03012	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CLDPALIF_00619	1.24e-198	prmC	2.1.1.297	-	J	ko:K02493	-	ko00000,ko01000,ko03012	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
CLDPALIF_00620	1.66e-243	ywlC	2.7.7.87	-	J	ko:K07566	-	ko00000,ko01000,ko03009,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
CLDPALIF_00621	5.28e-146	upp	2.4.2.9	-	F	ko:K00761	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CLDPALIF_00622	5.87e-166	atpB	-	-	C	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko03110	it plays a direct role in the translocation of protons across the membrane
CLDPALIF_00623	4.83e-37	atpE	-	-	C	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CLDPALIF_00624	2.48e-83	atpF	-	-	C	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CLDPALIF_00625	5.38e-119	atpH	-	-	C	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CLDPALIF_00626	0.0	atpA	3.6.3.14	-	C	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CLDPALIF_00627	1.48e-221	atpG	-	-	C	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CLDPALIF_00628	0.0	atpD	3.6.3.14	-	C	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CLDPALIF_00629	2.45e-93	atpC	-	-	C	ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane
CLDPALIF_00630	2.54e-42	-	-	-	S	-	-	-	Protein of unknown function (DUF1146)
CLDPALIF_00631	4.81e-227	mbl	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	Cell shape determining protein MreB Mrl
CLDPALIF_00632	1.59e-68	ytjA	-	-	S	ko:K08998	-	ko00000	Could be involved in insertion of integral membrane proteins into the membrane
CLDPALIF_00633	5.13e-46	-	-	-	S	-	-	-	Protein of unknown function (DUF2969)
CLDPALIF_00634	1.18e-275	rodA	-	-	D	ko:K05837	-	ko00000,ko03036	Belongs to the SEDS family
CLDPALIF_00635	9.45e-104	uspA	-	-	T	-	-	-	universal stress protein
CLDPALIF_00636	1.35e-56	-	-	-	-	-	-	-	-
CLDPALIF_00637	1.47e-302	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
CLDPALIF_00638	8.08e-110	-	-	-	S	-	-	-	Protein of unknown function (DUF1694)
CLDPALIF_00639	3.07e-142	rpsD	-	-	J	ko:K02986	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CLDPALIF_00640	0.0	ezrA	-	-	D	ko:K06286	-	ko00000,ko03036	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
CLDPALIF_00641	3.52e-272	iscS2	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
CLDPALIF_00642	2.86e-287	thiI	2.8.1.4	-	H	ko:K03151	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CLDPALIF_00643	2.1e-232	-	3.6.4.12	-	K	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Putative ATP-dependent DNA helicase recG C-terminal
CLDPALIF_00644	6.01e-153	rsuA	5.4.99.19	-	J	ko:K06183	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
CLDPALIF_00645	3.97e-57	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLDPALIF_00646	1.06e-86	-	-	-	S	-	-	-	GtrA-like protein
CLDPALIF_00647	4.08e-218	yfdH	-	GT2	M	ko:K12999	-	ko00000,ko01000,ko01003,ko01005	Glycosyltransferase, group 2 family protein
CLDPALIF_00648	3.33e-123	-	-	-	S	-	-	-	Protein of unknown function (DUF3990)
CLDPALIF_00649	8.53e-59	-	-	-	-	-	-	-	-
CLDPALIF_00650	9.25e-13	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLDPALIF_00651	0.0	yoaB	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
CLDPALIF_00652	3.02e-166	-	-	-	S	ko:K06926	-	ko00000	AAA domain, putative AbiEii toxin, Type IV TA system
CLDPALIF_00653	2.91e-67	-	-	-	-	-	-	-	-
CLDPALIF_00654	0.0	valS	6.1.1.9	-	J	ko:K01873	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
CLDPALIF_00655	1.22e-306	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
CLDPALIF_00656	1.06e-162	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
CLDPALIF_00657	6.18e-150	radC	-	-	L	ko:K03630	-	ko00000	DNA repair protein
CLDPALIF_00658	8.26e-226	mreB	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	cell shape determining protein MreB
CLDPALIF_00659	8.27e-189	mreC	-	-	M	ko:K03570	-	ko00000,ko03036	Involved in formation and maintenance of cell shape
CLDPALIF_00660	5.43e-122	mreD	-	-	-	ko:K03571	-	ko00000,ko03036	-
CLDPALIF_00661	1.4e-09	-	-	-	S	-	-	-	Protein of unknown function (DUF4044)
CLDPALIF_00662	1.02e-72	-	-	-	S	-	-	-	Protein of unknown function (DUF3397)
CLDPALIF_00663	5.63e-102	mraZ	-	-	K	ko:K03925	-	ko00000	Belongs to the MraZ family
CLDPALIF_00664	1.49e-223	rsmH	2.1.1.199	-	J	ko:K03438	-	ko00000,ko01000,ko03009	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
CLDPALIF_00665	6.55e-72	ftsL	-	-	D	-	-	-	Cell division protein FtsL
CLDPALIF_00666	0.0	pbpX	-	-	M	ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
CLDPALIF_00667	4.43e-224	mraY	2.7.8.13	-	M	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CLDPALIF_00668	0.0	murD	6.3.2.9	-	M	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CLDPALIF_00669	3.88e-264	murG	2.4.1.227	GT28	M	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CLDPALIF_00670	3.14e-194	divIB	-	-	D	ko:K03589	ko04112,map04112	ko00000,ko00001,ko03036	Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
CLDPALIF_00671	9.45e-315	ftsA	-	-	D	ko:K03590	ko04112,map04112	ko00000,ko00001,ko03036,ko04812	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
CLDPALIF_00672	2.52e-300	ftsZ	-	-	D	ko:K03531	ko04112,map04112	ko00000,ko00001,ko02048,ko03036,ko04812	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CLDPALIF_00673	1.43e-96	sepF	-	-	D	ko:K09772	-	ko00000,ko03036	Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
CLDPALIF_00674	2.42e-60	yggT	-	-	S	ko:K02221	-	ko00000,ko02044	YGGT family
CLDPALIF_00675	4.01e-192	ylmH	-	-	S	-	-	-	S4 domain protein
CLDPALIF_00676	6.3e-138	divIVA	-	-	D	ko:K04074	-	ko00000,ko03036	DivIVA domain protein
CLDPALIF_00677	0.0	ileS	6.1.1.5	-	J	ko:K01870	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CLDPALIF_00678	2.32e-43	cspA	-	-	K	ko:K03704	-	ko00000,ko03000	'Cold-shock' DNA-binding domain
CLDPALIF_00679	5.18e-134	nudF	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	ADP-ribose pyrophosphatase
CLDPALIF_00680	1.22e-55	-	-	-	-	-	-	-	-
CLDPALIF_00681	2.05e-163	mtnN	3.2.2.9	-	E	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CLDPALIF_00682	1.62e-276	iscS	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
CLDPALIF_00683	9.98e-75	XK27_04120	-	-	S	-	-	-	Putative amino acid metabolism
CLDPALIF_00684	4.47e-278	mnmA	2.8.1.13	-	J	ko:K00566	ko04122,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
CLDPALIF_00685	4.7e-163	pgm	-	-	G	-	-	-	Phosphoglycerate mutase family
CLDPALIF_00686	2.31e-148	-	-	-	S	-	-	-	repeat protein
CLDPALIF_00687	0.0	recD2	3.1.11.5	-	L	ko:K03581	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
CLDPALIF_00688	0.0	-	-	-	L	-	-	-	Nuclease-related domain
CLDPALIF_00689	1.75e-211	ytlR	-	-	I	-	-	-	Diacylglycerol kinase catalytic domain
CLDPALIF_00690	0.0	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
CLDPALIF_00691	3.23e-59	-	-	-	-	-	-	-	-
CLDPALIF_00693	3.14e-314	-	-	-	D	-	-	-	plasmid recombination enzyme
CLDPALIF_00694	1.91e-44	yxaM	-	-	EGP	-	-	-	Major facilitator Superfamily
CLDPALIF_00695	1.5e-150	-	-	-	S	-	-	-	F420-0:Gamma-glutamyl ligase
CLDPALIF_00696	1.83e-103	-	-	-	S	-	-	-	AAA domain
CLDPALIF_00697	9.82e-80	-	-	-	F	-	-	-	NUDIX domain
CLDPALIF_00698	2.46e-302	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_00699	0.0	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_00700	2.8e-160	rnc	3.1.26.3	-	J	ko:K03685	ko03008,ko05205,map03008,map05205	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
CLDPALIF_00701	0.0	smc	-	-	D	ko:K03529	-	ko00000,ko03036	Required for chromosome condensation and partitioning
CLDPALIF_00702	4.69e-226	ftsY	-	-	U	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
CLDPALIF_00703	0.0	pepD2	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLDPALIF_00704	1.69e-06	-	-	-	-	-	-	-	-
CLDPALIF_00705	2.1e-31	-	-	-	-	-	-	-	-
CLDPALIF_00706	5.41e-172	cysA	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_00707	0.0	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	FtsX-like permease family
CLDPALIF_00708	0.0	ctrA	-	-	E	ko:K03294	-	ko00000	amino acid
CLDPALIF_00709	5.56e-72	ylxM	-	-	S	ko:K09787	-	ko00000	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
CLDPALIF_00710	1.34e-289	ffh	3.6.5.4	-	U	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko01000,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CLDPALIF_00711	6.78e-60	rpsP	-	-	J	ko:K02959	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bS16 family
CLDPALIF_00712	2.08e-122	rimM	-	-	J	ko:K02860	-	ko00000,ko03009	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CLDPALIF_00713	1.34e-172	trmD	2.1.1.228	-	J	ko:K00554	-	ko00000,ko01000,ko03016	Belongs to the RNA methyltransferase TrmD family
CLDPALIF_00714	1.64e-74	rplS	-	-	J	ko:K02884	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
CLDPALIF_00715	4.96e-270	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_00716	1.15e-154	ung2	3.2.2.27	-	L	ko:K21929	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Uracil-DNA glycosylase
CLDPALIF_00717	7.18e-187	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase family
CLDPALIF_00718	9.86e-146	lexA	3.4.21.88	-	K	ko:K01356	-	ko00000,ko00002,ko01000,ko01002,ko03400	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CLDPALIF_00719	4.16e-51	ynzC	-	-	S	-	-	-	UPF0291 protein
CLDPALIF_00720	1.3e-40	XK26_06720	-	-	S	ko:K09976	-	ko00000	Uncharacterised protein family (UPF0154)
CLDPALIF_00721	0.0	mdlA	-	-	V	ko:K06148,ko:K18889	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLDPALIF_00722	0.0	mdlB	-	-	V	ko:K06147,ko:K18890	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLDPALIF_00723	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
CLDPALIF_00724	5.49e-290	cfa	2.1.1.79	-	M	ko:K00574	-	ko00000,ko01000	cyclopropane-fatty-acyl-phospholipid synthase
CLDPALIF_00725	4e-300	XK27_01810	-	-	S	-	-	-	Calcineurin-like phosphoesterase
CLDPALIF_00726	4.09e-80	-	-	-	S	ko:K07006	-	ko00000	Pyridoxamine 5'-phosphate oxidase
CLDPALIF_00727	1.16e-13	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
CLDPALIF_00728	2.83e-117	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
CLDPALIF_00729	1.91e-103	ribH	2.5.1.78	-	H	ko:K00794	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin
CLDPALIF_00730	2.29e-41	-	-	-	-	-	-	-	-
CLDPALIF_00731	1.1e-159	thiN	2.7.6.2	-	H	ko:K00949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000	thiamine pyrophosphokinase
CLDPALIF_00732	7.49e-154	rpe	5.1.3.1	-	G	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ribulose-phosphate 3-epimerase family
CLDPALIF_00733	1.71e-208	rsgA	3.1.3.100	-	S	ko:K06949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
CLDPALIF_00734	0.0	prkC	2.7.11.1	-	KLT	ko:K08884,ko:K12132	-	ko00000,ko01000,ko01001	serine threonine protein kinase
CLDPALIF_00735	3.28e-179	stp	3.1.3.16	-	T	ko:K20074	-	ko00000,ko01000,ko01009	phosphatase
CLDPALIF_00736	7.82e-311	sun	2.1.1.176	-	J	ko:K03500	-	ko00000,ko01000,ko03009	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CLDPALIF_00737	1.27e-219	fmt	2.1.2.9	-	J	ko:K00604	ko00670,ko00970,map00670,map00970	ko00000,ko00001,ko01000	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CLDPALIF_00738	0.0	priA	-	-	L	ko:K04066	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CLDPALIF_00739	2.37e-46	rpoZ	2.7.7.6	-	K	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
CLDPALIF_00740	5.97e-145	gmk	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Essential for recycling GMP and indirectly, cGMP
CLDPALIF_00741	2.19e-100	-	-	-	S	-	-	-	ASCH
CLDPALIF_00742	0.0	recN	-	-	L	ko:K03631	-	ko00000,ko03400	May be involved in recombinational repair of damaged DNA
CLDPALIF_00743	7.22e-197	rrmJ	2.1.1.226, 2.1.1.227	-	J	ko:K06442	-	ko00000,ko01000,ko03009	Ribosomal RNA large subunit methyltransferase J
CLDPALIF_00744	6.44e-205	ispA	2.5.1.1, 2.5.1.10, 2.5.1.29	-	H	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01006	Belongs to the FPP GGPP synthase family
CLDPALIF_00745	1.53e-47	xseB	3.1.11.6	-	L	ko:K03602	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
CLDPALIF_00746	1.97e-248	xseA	3.1.11.6	-	L	ko:K03601	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
CLDPALIF_00747	7.19e-199	folD	1.5.1.5, 3.5.4.9	-	F	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CLDPALIF_00748	2.78e-85	nusB	-	-	K	ko:K03625	-	ko00000,ko03009,ko03021	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CLDPALIF_00749	7.98e-93	WQ51_04310	-	-	S	ko:K10947	-	ko00000,ko03000	Asp23 family, cell envelope-related function
CLDPALIF_00750	2.11e-133	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CLDPALIF_00751	2.14e-257	pepP	3.4.11.9, 3.4.13.9	-	E	ko:K01262,ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
CLDPALIF_00752	7.95e-64	rpmA	-	-	J	ko:K02899	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL27 family
CLDPALIF_00753	6.82e-66	rplU	-	-	J	ko:K02888	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to 23S rRNA in the presence of protein L20
CLDPALIF_00754	5.24e-194	-	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLDPALIF_00755	0.0	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2325)
CLDPALIF_00757	2.07e-38	dmpI	5.3.2.6	-	G	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Belongs to the 4-oxalocrotonate tautomerase family
CLDPALIF_00758	0.0	-	-	-	S	-	-	-	Predicted membrane protein (DUF2207)
CLDPALIF_00759	8.21e-200	cinI	-	-	S	ko:K06889	-	ko00000	Serine hydrolase (FSH1)
CLDPALIF_00760	1.16e-269	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
CLDPALIF_00761	1.48e-136	-	-	-	L	-	-	-	PFAM Integrase catalytic
CLDPALIF_00762	2.28e-76	eriC	-	-	P	ko:K03281	-	ko00000	chloride
CLDPALIF_00763	5.51e-284	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLDPALIF_00764	0.0	aspS	6.1.1.12	-	J	ko:K01876	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
CLDPALIF_00765	7.1e-311	hisS	6.1.1.21	-	J	ko:K01892	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	histidyl-tRNA synthetase
CLDPALIF_00766	1.8e-99	dtd	-	-	J	ko:K07560	-	ko00000,ko01000,ko03016	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
CLDPALIF_00767	0.0	relA	2.7.6.5	-	KT	ko:K00951	ko00230,map00230	ko00000,ko00001,ko01000	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CLDPALIF_00768	3.8e-80	-	-	-	-	-	-	-	-
CLDPALIF_00769	4.8e-224	prmA	-	-	J	ko:K02687	-	ko00000,ko01000,ko03009	Ribosomal protein L11 methyltransferase
CLDPALIF_00770	1.3e-115	ybaK	-	-	S	ko:K03976	-	ko00000,ko01000,ko03016	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CLDPALIF_00771	1.78e-16	-	-	-	-	-	-	-	-
CLDPALIF_00772	6.05e-45	-	-	-	-	-	-	-	-
CLDPALIF_00773	9.28e-317	-	-	-	S	-	-	-	Putative threonine/serine exporter
CLDPALIF_00774	1.05e-226	citR	-	-	K	-	-	-	Putative sugar-binding domain
CLDPALIF_00775	2.41e-66	-	-	-	-	-	-	-	-
CLDPALIF_00776	7.91e-14	-	-	-	-	-	-	-	-
CLDPALIF_00777	8.1e-87	-	-	-	S	-	-	-	Domain of unknown function DUF1828
CLDPALIF_00778	5.38e-125	-	-	-	S	ko:K16924	-	ko00000,ko00002,ko02000	UPF0397 protein
CLDPALIF_00779	0.0	ykoD	-	-	P	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_00780	2.58e-189	cbiQ	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	cobalt transport
CLDPALIF_00781	9.9e-30	-	-	-	-	-	-	-	-
CLDPALIF_00782	1.24e-93	ytwI	-	-	S	-	-	-	Protein of unknown function (DUF441)
CLDPALIF_00783	0.0	citF	2.8.3.10	-	H	ko:K01643	ko02020,map02020	ko00000,ko00001,ko01000	Citrate (pro-3S)-lyase alpha chain
CLDPALIF_00784	1.79e-214	citE	4.1.3.34	-	G	ko:K01644	ko02020,map02020	ko00000,ko00001,ko01000	Belongs to the HpcH HpaI aldolase family
CLDPALIF_00785	1.6e-59	citD	-	-	C	ko:K01646	ko02020,map02020	ko00000,ko00001	Covalent carrier of the coenzyme of citrate lyase
CLDPALIF_00786	5.17e-249	citC	6.2.1.22	-	H	ko:K01910	ko02020,map02020	ko00000,ko00001,ko01000	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
CLDPALIF_00787	2.56e-196	-	-	-	I	-	-	-	Alpha/beta hydrolase family
CLDPALIF_00788	0.0	citP	-	-	P	ko:K03319	-	ko00000	Sodium:sulfate symporter transmembrane region
CLDPALIF_00789	5.26e-171	-	-	-	H	-	-	-	Aldolase/RraA
CLDPALIF_00791	1.93e-302	-	-	-	G	ko:K02027	-	ko00000,ko00002,ko02000	Bacterial extracellular solute-binding protein
CLDPALIF_00792	2.63e-50	-	-	-	-	-	-	-	-
CLDPALIF_00793	1.25e-143	-	-	-	K	-	-	-	WHG domain
CLDPALIF_00794	3.41e-125	azo1	1.5.1.36, 1.7.1.6	-	S	ko:K03206,ko:K19784,ko:K22393	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	NADPH-dependent FMN reductase
CLDPALIF_00795	2.58e-126	azr	1.5.1.36	-	S	ko:K22394	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	NADPH-dependent FMN reductase
CLDPALIF_00796	9.48e-194	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
CLDPALIF_00797	5.24e-230	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
CLDPALIF_00799	2.99e-75	cvpA	-	-	S	-	-	-	Colicin V production protein
CLDPALIF_00800	3.66e-166	rsmG	2.1.1.170	-	J	ko:K03501	-	ko00000,ko01000,ko03009,ko03036	Specifically methylates the N7 position of a guanine in 16S rRNA
CLDPALIF_00801	1.18e-190	noc	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
CLDPALIF_00802	4.99e-178	soj	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	Sporulation initiation inhibitor
CLDPALIF_00803	1.49e-197	spo0J	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
CLDPALIF_00804	1.1e-59	yyzM	-	-	S	-	-	-	Bacterial protein of unknown function (DUF951)
CLDPALIF_00805	6.88e-257	ychF	-	-	J	ko:K06942	-	ko00000,ko03009	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
CLDPALIF_00806	3.93e-176	-	-	-	S	-	-	-	Protein of unknown function (DUF1129)
CLDPALIF_00807	1.22e-190	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_00808	1.68e-179	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_00809	0.0	ndvA	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
CLDPALIF_00811	3.39e-156	vanR	-	-	K	-	-	-	response regulator
CLDPALIF_00812	9.28e-271	-	-	-	T	-	-	-	His Kinase A (phosphoacceptor) domain
CLDPALIF_00813	0.0	murE	6.3.2.13, 6.3.2.7	-	M	ko:K01928,ko:K05362	ko00300,ko00550,ko01100,map00300,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CLDPALIF_00814	7.79e-186	racD	5.1.1.13	-	M	ko:K01779	ko00250,ko01054,map00250,map01054	ko00000,ko00001,ko01000	Belongs to the aspartate glutamate racemases family
CLDPALIF_00815	6.94e-70	-	-	-	S	-	-	-	Enterocin A Immunity
CLDPALIF_00816	1.95e-45	-	-	-	-	-	-	-	-
CLDPALIF_00817	1.07e-35	-	-	-	-	-	-	-	-
CLDPALIF_00818	4.48e-34	-	-	-	-	-	-	-	-
CLDPALIF_00819	0.0	glcD	1.1.3.15	-	C	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	ko00000,ko00001,ko01000	FAD linked oxidases, C-terminal domain
CLDPALIF_00820	0.0	agl	3.2.1.20	GH31	G	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 31 family
CLDPALIF_00821	0.0	-	-	-	S	ko:K06921	-	ko00000	Archaea bacterial proteins of unknown function
CLDPALIF_00822	1.89e-23	-	-	-	-	-	-	-	-
CLDPALIF_00823	2.74e-06	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLDPALIF_00824	5.46e-182	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
CLDPALIF_00825	7.62e-134	-	-	-	G	-	-	-	Phosphoglycerate mutase family
CLDPALIF_00827	0.0	-	-	-	S	-	-	-	regulation of response to stimulus
CLDPALIF_00828	5.03e-277	-	-	-	M	-	-	-	CHAP domain
CLDPALIF_00834	4.51e-53	-	-	-	S	-	-	-	Protein of unknown function (DUF1002)
CLDPALIF_00836	1.15e-108	-	-	-	L	-	-	-	Initiator Replication protein
CLDPALIF_00837	2.76e-290	-	3.6.4.12	-	L	ko:K02314	ko03030,ko04112,map03030,map04112	ko00000,ko00001,ko01000,ko03032	DnaB-like helicase C terminal domain
CLDPALIF_00838	2.78e-161	-	-	-	-	-	-	-	-
CLDPALIF_00844	7.21e-23	-	-	-	L	ko:K07450	-	ko00000	Helix-turn-helix domain
CLDPALIF_00845	0.0	-	-	-	U	-	-	-	TraM recognition site of TraD and TraG
CLDPALIF_00847	5.8e-130	-	-	-	-	-	-	-	-
CLDPALIF_00849	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
CLDPALIF_00850	1.15e-64	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
CLDPALIF_00867	5.24e-75	-	-	-	-	-	-	-	-
CLDPALIF_00868	1.67e-95	-	-	-	K	-	-	-	Transcriptional regulator, MarR family
CLDPALIF_00869	8.44e-65	-	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CLDPALIF_00870	9.89e-112	fabH	2.3.1.180	-	I	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLDPALIF_00871	1.98e-47	fabH	2.3.1.180	-	I	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLDPALIF_00872	4.22e-41	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLDPALIF_00873	2.77e-177	fabD	2.3.1.39	-	I	ko:K00645,ko:K15327,ko:K15329	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004,ko01008	Malonyl CoA-acyl carrier protein transacylase
CLDPALIF_00874	1.4e-137	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	reductase
CLDPALIF_00875	2.53e-268	fabF	2.3.1.179	-	I	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
CLDPALIF_00876	3.17e-67	accB	-	-	I	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
CLDPALIF_00877	7.28e-80	fabZ	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	FabA-like domain
CLDPALIF_00878	3.44e-300	accC	6.3.4.14, 6.4.1.2	-	I	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Acetyl-CoA carboxylase biotin carboxylase subunit
CLDPALIF_00879	4.9e-180	accD	2.1.3.15, 6.4.1.2	-	I	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CLDPALIF_00880	2.42e-163	accA	2.1.3.15, 6.4.1.2	-	I	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	alpha subunit
CLDPALIF_00881	1.9e-158	fabI	1.3.1.10, 1.3.1.9	-	I	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl- acyl-carrier-protein reductase NADH
CLDPALIF_00882	7.01e-103	birA	6.3.4.15	-	H	ko:K03524	ko00780,ko01100,map00780,map01100	ko00000,ko00001,ko01000,ko03000	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
CLDPALIF_00883	2.27e-245	ldhA	1.1.1.28	-	C	ko:K03778,ko:K18347	ko00620,ko01120,ko01502,ko02020,map00620,map01120,map01502,map02020	ko00000,ko00001,ko00002,ko01000,ko01504	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLDPALIF_00884	1.44e-07	-	-	-	S	-	-	-	YSIRK type signal peptide
CLDPALIF_00886	1.2e-202	xth	3.1.11.2	-	L	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	exodeoxyribonuclease III
CLDPALIF_00887	0.0	-	-	-	E	ko:K20265	ko02024,map02024	ko00000,ko00001,ko02000	amino acid
CLDPALIF_00888	0.0	-	-	-	L	-	-	-	Helicase C-terminal domain protein
CLDPALIF_00889	6.72e-261	pbpX	-	-	V	-	-	-	Beta-lactamase
CLDPALIF_00890	1.05e-289	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
CLDPALIF_00891	4.19e-92	def2	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins
CLDPALIF_00892	1.63e-52	-	-	-	M	-	-	-	Glycosyl transferase family 2
CLDPALIF_00893	1.81e-91	-	-	-	M	-	-	-	Glycosyltransferase, group 1 family protein
CLDPALIF_00895	1.08e-81	-	-	-	S	ko:K07011	-	ko00000	Glycosyltransferase like family 2
CLDPALIF_00896	0.0	-	-	-	L	-	-	-	Plasmid pRiA4b ORF-3-like protein
CLDPALIF_00897	2.44e-285	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CLDPALIF_00898	0.0	potE	-	-	E	-	-	-	Amino Acid
CLDPALIF_00899	2.65e-107	-	-	-	S	-	-	-	Fic/DOC family
CLDPALIF_00900	0.0	-	-	-	-	-	-	-	-
CLDPALIF_00901	5.87e-110	-	-	-	-	-	-	-	-
CLDPALIF_00902	1.92e-113	yhaH	-	-	S	-	-	-	Protein of unknown function (DUF805)
CLDPALIF_00903	2.65e-89	-	-	-	O	-	-	-	OsmC-like protein
CLDPALIF_00904	5.3e-264	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
CLDPALIF_00905	3e-290	sptS	-	-	T	-	-	-	Histidine kinase
CLDPALIF_00906	2.14e-85	dltr	-	-	K	-	-	-	response regulator
CLDPALIF_00907	4.52e-35	dltr	-	-	K	-	-	-	response regulator
CLDPALIF_00908	6.17e-140	-	-	-	T	-	-	-	Region found in RelA / SpoT proteins
CLDPALIF_00909	0.0	gtfA	2.4.1.7	GH13	G	ko:K00690	ko00500,map00500	ko00000,ko00001,ko01000	Sucrose glucosyltransferase
CLDPALIF_00910	0.0	melA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
CLDPALIF_00911	1.72e-268	msmX	-	-	P	ko:K10112	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
CLDPALIF_00912	1.02e-195	-	-	-	P	ko:K10119	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
CLDPALIF_00913	8.41e-202	msmF	-	-	P	ko:K10118	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
CLDPALIF_00914	3.19e-302	msmE	-	-	G	ko:K10117	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
CLDPALIF_00915	3.13e-206	-	-	-	K	ko:K03484	-	ko00000,ko03000	Periplasmic binding protein domain
CLDPALIF_00916	2.14e-48	-	-	-	-	-	-	-	-
CLDPALIF_00917	8.29e-254	galM	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of alpha and beta anomers of maltose
CLDPALIF_00918	4.65e-219	-	-	-	L	-	-	-	Bifunctional protein
CLDPALIF_00927	0.0	XK27_03440	3.1.21.5	-	L	ko:K01156	-	ko00000,ko01000,ko02048	Type III restriction enzyme, res subunit
CLDPALIF_00928	1.81e-264	mod	2.1.1.72	-	L	ko:K00571,ko:K07316	-	ko00000,ko01000,ko02048	DNA methylase
CLDPALIF_00935	2.8e-258	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
CLDPALIF_00936	1.78e-25	-	-	-	-	-	-	-	-
CLDPALIF_00937	9.92e-65	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_00938	6.1e-186	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_00939	2.07e-37	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
CLDPALIF_00940	4.39e-268	-	-	-	S	ko:K09963	-	ko00000	Bacterial protein of unknown function (DUF871)
CLDPALIF_00942	1.13e-35	-	-	-	K	ko:K07729	-	ko00000,ko03000	Helix-turn-helix XRE-family like proteins
CLDPALIF_00943	0.000868	-	-	-	-	-	-	-	-
CLDPALIF_00944	2.04e-277	metE	2.1.1.14	-	E	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	methionine synthase, vitamin-B12 independent
CLDPALIF_00945	6.6e-115	luxS	4.4.1.21	-	H	ko:K07173	ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111	ko00000,ko00001,ko00002,ko01000	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
CLDPALIF_00946	0.0	lctP	-	-	C	ko:K03303	-	ko00000,ko02000	L-lactate permease
CLDPALIF_00947	1.59e-172	znuB	-	-	U	ko:K02075,ko:K09816	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC 3 transport family
CLDPALIF_00948	1.63e-152	adcC	-	-	P	ko:K02074,ko:K09817,ko:K11710	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
CLDPALIF_00949	9.9e-209	-	-	-	P	ko:K02077	-	ko00000,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
CLDPALIF_00950	4.47e-56	-	-	-	K	ko:K21903	-	ko00000,ko03000	helix_turn_helix, Arsenical Resistance Operon Repressor
CLDPALIF_00951	0.0	fruA	2.7.1.202	-	GT	ko:K02768,ko:K02769,ko:K02770	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphotransferase System
CLDPALIF_00952	2.18e-215	pfkB	2.7.1.56	-	H	ko:K00882	ko00051,map00051	ko00000,ko00001,ko01000	Belongs to the carbohydrate kinase PfkB family. LacC subfamily
CLDPALIF_00953	3.14e-175	fruR	-	-	K	ko:K03436	-	ko00000,ko03000	DeoR C terminal sensor domain
CLDPALIF_00954	6.39e-279	natB	-	-	CP	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
CLDPALIF_00955	3.09e-212	natA	-	-	S	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_00956	3.41e-88	-	-	-	-	-	-	-	-
CLDPALIF_00957	2.52e-32	-	-	-	-	-	-	-	-
CLDPALIF_00958	6.32e-42	-	-	-	K	ko:K07727	-	ko00000,ko03000	Transcriptional regulator
CLDPALIF_00959	4.74e-107	-	-	-	-	-	-	-	-
CLDPALIF_00960	7.87e-30	-	-	-	-	-	-	-	-
CLDPALIF_00964	5.02e-180	blpT	-	-	-	-	-	-	-
CLDPALIF_00965	7.86e-138	mesE	-	-	M	ko:K12293,ko:K20345	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko02000	Transport protein ComB
CLDPALIF_00966	1.85e-141	comA	-	-	V	ko:K06147,ko:K06148,ko:K12292,ko:K20344	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko01000,ko02000	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
CLDPALIF_00967	6.13e-110	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLDPALIF_00968	5.94e-200	-	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
CLDPALIF_00969	8.97e-47	-	-	-	-	-	-	-	-
CLDPALIF_00970	1.08e-229	-	-	-	L	-	-	-	DDE superfamily endonuclease
CLDPALIF_00971	1.48e-249	nrdF	1.17.4.1	-	F	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLDPALIF_00972	5.23e-97	nrdI	-	-	F	ko:K03647	-	ko00000	NrdI Flavodoxin like
CLDPALIF_00973	0.0	nrdE	1.17.4.1	-	F	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLDPALIF_00974	4.26e-22	-	-	-	L	ko:K07467	-	ko00000	Replication initiation factor
CLDPALIF_00978	1.86e-243	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
CLDPALIF_00979	4.18e-208	-	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
CLDPALIF_00980	1.79e-74	-	-	-	L	-	-	-	Resolvase, N-terminal
CLDPALIF_00981	1.14e-164	-	-	-	S	-	-	-	Fic/DOC family
CLDPALIF_00982	5.88e-212	repA	-	-	S	-	-	-	Replication initiator protein A
CLDPALIF_00983	4.65e-184	-	-	-	D	-	-	-	AAA domain
CLDPALIF_00984	1.17e-38	-	-	-	-	-	-	-	-
CLDPALIF_00985	4.87e-96	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
CLDPALIF_00986	6.91e-92	-	-	-	L	-	-	-	IS1381, transposase OrfA
CLDPALIF_00987	1.07e-141	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
CLDPALIF_00988	1.65e-151	plsC	2.3.1.51	-	I	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Acyltransferase
CLDPALIF_00989	2.03e-251	yabB	2.1.1.223	-	L	ko:K07461,ko:K15460	-	ko00000,ko01000,ko03016	Methyltransferase small domain
CLDPALIF_00990	2.21e-180	rpsB	-	-	J	ko:K02967	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS2 family
CLDPALIF_00991	1.76e-235	tsf	-	-	J	ko:K02357	-	ko00000,ko03012,ko03029	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CLDPALIF_00992	5.86e-168	pyrH	2.7.4.22	-	F	ko:K09903	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphorylation of UMP to UDP
CLDPALIF_00993	1.22e-121	frr	-	-	J	ko:K02838	-	ko00000,ko03012	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
CLDPALIF_00994	6.38e-178	uppS	2.5.1.31	-	H	ko:K00806	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CLDPALIF_00995	3.93e-181	cdsA	2.7.7.41	-	I	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the CDS family
CLDPALIF_00996	6.38e-254	rseP	-	-	M	ko:K11749	ko02024,ko04112,map02024,map04112	ko00000,ko00001,ko01000,ko01002	zinc metalloprotease
CLDPALIF_00997	0.0	proS	6.1.1.15	-	J	ko:K01881	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
CLDPALIF_00998	0.0	polC	2.7.7.7	-	L	ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLDPALIF_00999	3.4e-108	rimP	-	-	J	ko:K09748	-	ko00000,ko03009	Required for maturation of 30S ribosomal subunits
CLDPALIF_01000	1.19e-259	nusA	-	-	K	ko:K02600	-	ko00000,ko03009,ko03021	Participates in both transcription termination and antitermination
CLDPALIF_01001	3.75e-63	ylxR	-	-	K	ko:K07742	-	ko00000	Protein of unknown function (DUF448)
CLDPALIF_01002	1.61e-64	ylxQ	-	-	J	-	-	-	ribosomal protein
CLDPALIF_01003	0.0	infB	-	-	J	ko:K02519	-	ko00000,ko03012,ko03029	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CLDPALIF_01004	1.67e-79	rbfA	-	-	J	ko:K02834	-	ko00000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CLDPALIF_01005	1.64e-198	truB	5.4.99.25	-	J	ko:K03177,ko:K03483	-	ko00000,ko01000,ko03000,ko03016	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CLDPALIF_01006	5.35e-223	ribF	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the ribF family
CLDPALIF_01007	6.02e-247	hrcA	-	-	K	ko:K03705	-	ko00000,ko03000	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
CLDPALIF_01008	3.74e-109	grpE	-	-	O	ko:K03687	-	ko00000,ko03029,ko03110	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CLDPALIF_01009	0.0	dnaK	-	-	O	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Heat shock 70 kDa protein
CLDPALIF_01010	6.87e-277	dnaJ	-	-	O	ko:K03686	-	ko00000,ko03029,ko03110	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
CLDPALIF_01011	0.0	lepA	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
CLDPALIF_01012	1.09e-226	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLDPALIF_01019	7e-19	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
CLDPALIF_01020	1.21e-16	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLDPALIF_01021	1.71e-102	-	-	-	S	-	-	-	DNA binding
CLDPALIF_01025	2.18e-07	-	-	-	-	-	-	-	-
CLDPALIF_01026	5.23e-122	-	-	-	S	-	-	-	AntA/AntB antirepressor
CLDPALIF_01032	2.36e-08	-	-	-	K	-	-	-	DNA-binding protein
CLDPALIF_01036	1.11e-70	-	-	-	S	-	-	-	Protein of unknown function (DUF1071)
CLDPALIF_01037	8.46e-29	-	-	-	K	-	-	-	Helix-turn-helix domain
CLDPALIF_01038	8.93e-64	-	-	-	L	ko:K02315	-	ko00000,ko03032	IstB-like ATP binding protein
CLDPALIF_01044	5.99e-52	-	-	-	L	-	-	-	Endodeoxyribonuclease RusA
CLDPALIF_01045	1.08e-10	-	-	-	-	-	-	-	-
CLDPALIF_01054	8.27e-46	-	-	-	S	-	-	-	HicB_like antitoxin of bacterial toxin-antitoxin system
CLDPALIF_01056	3.6e-47	-	-	-	L	ko:K07474	-	ko00000	Terminase small subunit
CLDPALIF_01057	5.64e-290	-	-	-	S	-	-	-	Terminase-like family
CLDPALIF_01058	5.29e-177	-	-	-	S	ko:K09961	-	ko00000	Protein of unknown function (DUF1073)
CLDPALIF_01059	3.57e-128	-	-	-	S	-	-	-	Phage Mu protein F like protein
CLDPALIF_01060	1.14e-16	-	-	-	S	-	-	-	Lysin motif
CLDPALIF_01061	1.12e-136	-	-	-	S	ko:K09960	-	ko00000	Uncharacterized protein conserved in bacteria (DUF2213)
CLDPALIF_01062	3.08e-76	-	-	-	-	-	-	-	-
CLDPALIF_01063	3.18e-182	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2184)
CLDPALIF_01065	5.11e-95	-	-	-	-	-	-	-	-
CLDPALIF_01066	5.73e-56	-	-	-	-	-	-	-	-
CLDPALIF_01067	5.61e-69	-	-	-	-	-	-	-	-
CLDPALIF_01068	1.12e-193	-	-	-	S	-	-	-	Protein of unknown function (DUF3383)
CLDPALIF_01069	1.33e-73	-	-	-	-	-	-	-	-
CLDPALIF_01072	0.0	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
CLDPALIF_01073	1.06e-69	-	-	-	M	-	-	-	LysM domain
CLDPALIF_01074	6.91e-61	-	-	-	-	-	-	-	-
CLDPALIF_01075	1.11e-128	-	-	-	-	-	-	-	-
CLDPALIF_01076	4.6e-63	-	-	-	-	-	-	-	-
CLDPALIF_01077	1.37e-42	-	-	-	-	-	-	-	-
CLDPALIF_01078	2.78e-156	-	-	-	S	-	-	-	Baseplate J-like protein
CLDPALIF_01080	8.78e-42	-	-	-	-	-	-	-	-
CLDPALIF_01084	9.46e-58	-	-	-	-	-	-	-	-
CLDPALIF_01085	2.12e-27	-	-	-	S	-	-	-	Phage uncharacterised protein (Phage_XkdX)
CLDPALIF_01088	6.31e-27	-	-	-	-	-	-	-	-
CLDPALIF_01089	1.76e-38	-	-	-	-	-	-	-	-
CLDPALIF_01090	1.52e-220	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
CLDPALIF_01091	5.3e-32	-	-	-	-	-	-	-	-
CLDPALIF_01092	9.71e-47	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
CLDPALIF_01093	1.04e-161	ribD	1.1.1.193, 3.5.4.26	-	H	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	ko00000,ko00001,ko00002,ko01000	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CLDPALIF_01094	3.05e-110	ribE	2.5.1.9	-	H	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Riboflavin synthase
CLDPALIF_01095	3.59e-17	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
CLDPALIF_01096	9.13e-157	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902
CLDPALIF_01097	6.2e-52	-	-	-	L	-	-	-	Transposase DDE domain
CLDPALIF_01098	0.0	gnd	1.1.1.343, 1.1.1.44	-	H	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CLDPALIF_01099	5.38e-39	-	-	-	-	-	-	-	-
CLDPALIF_01100	0.0	pox1	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
CLDPALIF_01101	0.0	gidA	-	-	D	ko:K03495	-	ko00000,ko03016,ko03036	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
CLDPALIF_01102	0.0	mnmE	-	-	S	ko:K03650	-	ko00000,ko01000,ko03016	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CLDPALIF_01103	5.58e-191	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
CLDPALIF_01104	1.87e-81	rnpA	3.1.26.5	-	J	ko:K03536	-	ko00000,ko01000,ko03016	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
CLDPALIF_01105	3.26e-23	rpmH	-	-	J	ko:K02914	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL34 family
CLDPALIF_01106	1.92e-315	dnaA	-	-	L	ko:K02313	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko03032,ko03036	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CLDPALIF_01107	1.05e-240	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
CLDPALIF_01108	1.13e-48	yaaA	-	-	S	ko:K14761	-	ko00000,ko03009	S4 domain protein YaaA
CLDPALIF_01109	5.14e-268	recF	-	-	L	ko:K03629	ko03440,map03440	ko00000,ko00001,ko03400	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CLDPALIF_01110	0.0	gyrB	5.99.1.3	-	L	ko:K02470	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLDPALIF_01111	0.0	gyrA	5.99.1.3	-	L	ko:K02469	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLDPALIF_01112	1.93e-65	rpsF	-	-	J	ko:K02990	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Binds together with S18 to 16S ribosomal RNA
CLDPALIF_01113	7.46e-108	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
CLDPALIF_01114	1.89e-47	rpsR	-	-	J	ko:K02963	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CLDPALIF_01115	1.28e-168	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902
CLDPALIF_01116	0.0	uvrA2	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	excinuclease ABC, A subunit
CLDPALIF_01117	2.25e-241	mmuM	2.1.1.10	-	H	ko:K00547	ko00270,ko01100,ko01110,map00270,map01100,map01110	ko00000,ko00001,ko01000	homocysteine S-methyltransferase
CLDPALIF_01118	5.94e-148	-	-	-	I	-	-	-	Acid phosphatase homologues
CLDPALIF_01119	4.87e-262	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
CLDPALIF_01120	1.12e-104	yvbK	-	-	K	-	-	-	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
CLDPALIF_01121	1.12e-149	maa3	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
CLDPALIF_01122	1.59e-259	pbpX1	-	-	V	-	-	-	Beta-lactamase
CLDPALIF_01123	3.1e-127	pdxK	2.7.1.35	-	H	ko:K00868	ko00750,ko01100,map00750,map01100	ko00000,ko00001,ko01000	Phosphomethylpyrimidine kinase
CLDPALIF_01124	7.89e-124	-	-	-	S	-	-	-	ECF-type riboflavin transporter, S component
CLDPALIF_01125	1.87e-290	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
CLDPALIF_01126	5.74e-108	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLDPALIF_01127	0.0	yqjE	3.4.11.14, 3.4.11.4	-	E	ko:K01258,ko:K01263	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
CLDPALIF_01128	6.84e-243	-	-	-	L	ko:K07478	-	ko00000	AAA C-terminal domain
CLDPALIF_01129	1.12e-85	spxA	-	-	K	ko:K16509	-	ko00000	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
CLDPALIF_01130	9.63e-204	treB	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
CLDPALIF_01131	2.02e-137	treB	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
CLDPALIF_01132	4.21e-129	treR	-	-	K	ko:K03486	-	ko00000,ko03000	UTRA
CLDPALIF_01133	0.0	treC	3.2.1.93	GH13	G	ko:K01226	ko00500,map00500	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
CLDPALIF_01134	2.83e-90	-	-	-	S	-	-	-	AAA domain
CLDPALIF_01141	1.7e-23	-	-	-	-	-	-	-	-
CLDPALIF_01144	1.8e-20	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLDPALIF_01147	2.62e-157	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLDPALIF_01148	5.14e-38	rpmF	-	-	J	ko:K02911	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bL32 family
CLDPALIF_01149	3.57e-47	-	-	-	S	-	-	-	Lipopolysaccharide assembly protein A domain
CLDPALIF_01150	1.18e-183	-	-	-	S	ko:K07124	-	ko00000	Belongs to the short-chain dehydrogenases reductases (SDR) family
CLDPALIF_01151	6.82e-223	rnz	3.1.26.11	-	J	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
CLDPALIF_01152	0.0	oatA	-	-	I	-	-	-	Acyltransferase
CLDPALIF_01153	1.88e-309	obg	-	-	S	ko:K03979	-	ko00000,ko01000,ko03009	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CLDPALIF_01154	0.0	uvrC	-	-	L	ko:K03703	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
CLDPALIF_01155	1.58e-140	yngC	-	-	S	-	-	-	SNARE associated Golgi protein
CLDPALIF_01156	0.0	yhdG	-	-	E	ko:K03294	-	ko00000	Amino Acid
CLDPALIF_01157	1.14e-230	gyaR	1.1.1.26, 1.1.1.399, 1.1.1.95	-	CH	ko:K00015,ko:K00058	ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLDPALIF_01158	1.83e-190	yxeH	-	-	S	-	-	-	hydrolase
CLDPALIF_01159	6.32e-41	-	-	-	S	-	-	-	reductase
CLDPALIF_01160	2.98e-50	-	-	-	S	-	-	-	reductase
CLDPALIF_01161	1.19e-43	-	-	-	S	-	-	-	reductase
CLDPALIF_01162	4.66e-277	coaBC	4.1.1.36, 6.3.2.5	-	H	ko:K01598,ko:K13038	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CLDPALIF_01163	6.59e-296	-	-	-	L	-	-	-	Transposase DDE domain
CLDPALIF_01164	1.2e-220	-	-	-	-	-	-	-	-
CLDPALIF_01165	1.86e-31	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLDPALIF_01167	0.0	ydgH	-	-	S	ko:K06994	-	ko00000	MMPL family
CLDPALIF_01168	1.53e-127	yobS	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
CLDPALIF_01169	1.89e-205	-	3.5.2.6	-	V	ko:K17836	ko00311,ko01130,ko01501,map00311,map01130,map01501	ko00000,ko00001,ko00002,ko01000,ko01504	Beta-lactamase enzyme family
CLDPALIF_01170	1.4e-207	corA	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
CLDPALIF_01171	1.23e-309	-	-	-	G	ko:K02027	-	ko00000,ko00002,ko02000	Bacterial extracellular solute-binding protein
CLDPALIF_01172	0.0	-	-	-	S	-	-	-	Zn-dependent metallo-hydrolase RNA specificity domain
CLDPALIF_01173	3.25e-186	-	-	-	P	ko:K02026	-	ko00000,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
CLDPALIF_01174	1.64e-202	-	-	-	P	ko:K02025	-	ko00000,ko00002,ko02000	ABC-type sugar transport systems, permease components
CLDPALIF_01175	5.26e-259	malK	-	-	P	ko:K10112,ko:K17240	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ATPases associated with a variety of cellular activities
CLDPALIF_01176	0.0	pepD1	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLDPALIF_01177	7.24e-204	endA	-	-	F	ko:K15051	-	ko00000	DNA RNA non-specific endonuclease
CLDPALIF_01178	1.29e-230	-	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	EXOIII
CLDPALIF_01179	5.11e-203	-	-	-	K	-	-	-	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CLDPALIF_01180	2.23e-150	yviA	-	-	S	-	-	-	Protein of unknown function (DUF421)
CLDPALIF_01181	2.94e-74	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
CLDPALIF_01183	2.22e-296	-	-	-	E	ko:K03294	-	ko00000	amino acid
CLDPALIF_01184	9.05e-78	apfA	3.6.1.61	-	F	ko:K18445	ko00230,map00230	ko00000,ko00001,ko01000	Nudix hydrolase
CLDPALIF_01185	3.36e-42	-	-	-	-	-	-	-	-
CLDPALIF_01186	1.78e-100	-	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Carboxymuconolactone decarboxylase family
CLDPALIF_01187	5.26e-36	-	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Carboxymuconolactone decarboxylase family
CLDPALIF_01188	2.7e-277	mtlD	1.1.1.17	-	C	ko:K00009	ko00051,map00051	ko00000,ko00001,ko01000	mannitol-1-phosphate 5-dehydrogenase activity
CLDPALIF_01189	5.75e-103	mtlF	2.7.1.197	-	G	ko:K02798	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLDPALIF_01190	0.0	mtlA	2.7.1.197	-	G	ko:K02799,ko:K02800	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
CLDPALIF_01191	0.0	mtlR	-	-	K	ko:K03483	-	ko00000,ko03000	Mga helix-turn-helix domain
CLDPALIF_01192	0.0	glmS	2.6.1.16	-	M	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	ko00000,ko00001,ko01000,ko01002	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
CLDPALIF_01193	0.0	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
CLDPALIF_01194	6.9e-107	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
CLDPALIF_01195	4.47e-58	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
CLDPALIF_01196	1.38e-309	cycA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
CLDPALIF_01197	7.06e-111	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
CLDPALIF_01198	2.07e-203	-	-	-	K	-	-	-	Transcriptional regulator
CLDPALIF_01199	1.31e-81	-	-	-	S	-	-	-	Domain of unknown function (DUF956)
CLDPALIF_01200	3.51e-222	manN	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	system, mannose fructose sorbose family IID component
CLDPALIF_01201	9.65e-181	manY	-	-	G	ko:K02746,ko:K02795	ko00051,ko00052,ko00520,ko01100,ko02060,map00051,map00052,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system
CLDPALIF_01202	2.72e-236	manL	2.7.1.191	-	G	ko:K02793,ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
CLDPALIF_01204	1.29e-41	-	-	-	O	-	-	-	OsmC-like protein
CLDPALIF_01206	1.33e-44	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_01213	5.77e-155	-	-	-	-	-	-	-	-
CLDPALIF_01214	1.98e-91	-	-	-	-	-	-	-	-
CLDPALIF_01215	2.44e-126	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
CLDPALIF_01216	1.28e-134	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
CLDPALIF_01217	1.56e-254	xerS	-	-	L	ko:K04763	-	ko00000,ko03036	Belongs to the 'phage' integrase family
CLDPALIF_01218	5.69e-110	-	-	-	M	-	-	-	LysM domain protein
CLDPALIF_01219	0.0	ponA	2.4.1.129, 3.4.16.4	GT51	M	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein 1A
CLDPALIF_01224	6.43e-10	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
CLDPALIF_01225	0.0	-	-	-	-	ko:K14201	ko05150,map05150	ko00000,ko00001	-
CLDPALIF_01228	3.74e-180	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
CLDPALIF_01229	3.16e-192	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	haloacid dehalogenase-like hydrolase
CLDPALIF_01230	0.0	fusA1	-	-	J	-	-	-	elongation factor G
CLDPALIF_01231	9.52e-205	yvgN	-	-	C	-	-	-	Aldo keto reductase
CLDPALIF_01232	5.49e-97	-	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
CLDPALIF_01233	7.93e-63	-	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
CLDPALIF_01234	7.75e-170	ysaA	3.1.3.5, 3.8.1.2	-	S	ko:K01560,ko:K07025,ko:K08723	ko00230,ko00240,ko00361,ko00625,ko00760,ko01100,ko01110,ko01120,map00230,map00240,map00361,map00625,map00760,map01100,map01110,map01120	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
CLDPALIF_01235	3.35e-223	ABC-SBP	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
CLDPALIF_01236	4.76e-168	XK27_08840	-	-	U	ko:K05832	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
CLDPALIF_01237	8.64e-176	XK27_08845	-	-	S	ko:K05833	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_01238	1.59e-315	-	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
CLDPALIF_01239	2.55e-26	-	-	-	-	-	-	-	-
CLDPALIF_01240	3.93e-134	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase
CLDPALIF_01241	8.87e-226	ydbI	-	-	K	-	-	-	AI-2E family transporter
CLDPALIF_01242	4.65e-120	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_01243	3.26e-292	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_01244	1.09e-148	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
CLDPALIF_01245	5.76e-66	-	-	-	M	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CLDPALIF_01246	5.03e-76	-	-	-	K	-	-	-	Helix-turn-helix domain
CLDPALIF_01247	1.17e-144	ppiB	5.2.1.8	-	G	ko:K03768	-	ko00000,ko01000,ko03110	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CLDPALIF_01248	1.05e-221	ppaC	3.6.1.1	-	C	ko:K15986	ko00190,map00190	ko00000,ko00001,ko01000	inorganic pyrophosphatase
CLDPALIF_01249	1.11e-234	-	-	-	K	-	-	-	Transcriptional regulator
CLDPALIF_01250	0.0	parC	-	-	L	ko:K02621	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
CLDPALIF_01251	0.0	parE	-	-	L	ko:K02622	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
CLDPALIF_01252	9.39e-141	plsY	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
CLDPALIF_01253	0.0	snf	-	-	KL	-	-	-	domain protein
CLDPALIF_01254	1.73e-48	-	-	-	-	-	-	-	-
CLDPALIF_01255	1.24e-08	-	-	-	-	-	-	-	-
CLDPALIF_01256	4.83e-136	pncA	-	-	Q	-	-	-	Isochorismatase family
CLDPALIF_01257	1.51e-159	-	-	-	-	-	-	-	-
CLDPALIF_01260	4.13e-83	-	-	-	-	-	-	-	-
CLDPALIF_01261	3.56e-47	-	-	-	-	-	-	-	-
CLDPALIF_01262	5.67e-278	yqjV	-	-	EGP	-	-	-	Major Facilitator Superfamily
CLDPALIF_01271	5.77e-39	-	-	-	S	-	-	-	Bacteriophage holin of superfamily 6 (Holin_LLH)
CLDPALIF_01272	4.97e-102	-	-	-	S	-	-	-	N-acetylmuramoyl-L-alanine amidase activity
CLDPALIF_01273	1.33e-35	rpmB	-	-	J	ko:K02902	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL28 family
CLDPALIF_01274	8.29e-75	yloU	-	-	S	-	-	-	Asp23 family, cell envelope-related function
CLDPALIF_01275	0.0	yloV	-	-	S	ko:K07030	-	ko00000	DAK2 domain fusion protein YloV
CLDPALIF_01276	0.0	recG	3.6.4.12	-	L	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CLDPALIF_01277	3.69e-233	plsX	2.3.1.15	-	I	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
CLDPALIF_01278	7.32e-46	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLDPALIF_01279	1.21e-245	oppD	-	-	P	ko:K02031,ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
CLDPALIF_01280	3.27e-229	oppF	-	-	P	ko:K02032	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
CLDPALIF_01281	7.92e-221	oppB	-	-	P	ko:K02033,ko:K02034	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLDPALIF_01282	3.74e-182	oppC5	-	-	P	ko:K02034	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
CLDPALIF_01283	3.35e-55	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_01284	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
CLDPALIF_01285	1.8e-316	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
CLDPALIF_01286	2.99e-230	thyA	2.1.1.45	-	F	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CLDPALIF_01287	7.89e-119	folA	1.5.1.3	-	H	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CLDPALIF_01288	0.0	aha1	-	-	P	ko:K12952	-	ko00000,ko01000	E1-E2 ATPase
CLDPALIF_01289	2.57e-223	-	-	-	F	ko:K15051	-	ko00000	DNA/RNA non-specific endonuclease
CLDPALIF_01290	2.16e-205	metQ	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
CLDPALIF_01291	3.87e-241	metN	-	-	P	ko:K02071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLDPALIF_01292	3.32e-122	metI	-	-	P	ko:K02072	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLDPALIF_01293	0.0	fumC	4.2.1.2	-	C	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	ko00000,ko00001,ko00002,ko01000	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
CLDPALIF_01294	0.0	frdA	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
CLDPALIF_01295	1.66e-217	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLDPALIF_01296	0.0	pepC4	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
CLDPALIF_01297	6.61e-186	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
CLDPALIF_01298	0.0	-	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
CLDPALIF_01299	1.52e-119	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
CLDPALIF_01300	0.0	qacA	-	-	EGP	-	-	-	Major Facilitator
CLDPALIF_01305	1.42e-122	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLDPALIF_01306	0.0	rumA_2	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CLDPALIF_01307	1.01e-256	flp	-	-	V	-	-	-	Beta-lactamase
CLDPALIF_01308	2.79e-309	nhaC	-	-	C	ko:K03315	-	ko00000,ko02000	Na H antiporter NhaC
CLDPALIF_01309	9.92e-187	-	-	-	I	-	-	-	transferase activity, transferring acyl groups other than amino-acyl groups
CLDPALIF_01310	1.46e-75	-	-	-	-	-	-	-	-
CLDPALIF_01311	2.61e-148	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
CLDPALIF_01312	5.58e-219	dagK	2.7.1.107	-	G	ko:K07029	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko01000	Lipid kinase
CLDPALIF_01313	0.0	gatB	6.3.5.6, 6.3.5.7	-	J	ko:K02434	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CLDPALIF_01314	0.0	gatA	6.3.5.6, 6.3.5.7	-	J	ko:K02433	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
CLDPALIF_01315	5.42e-67	gatC	6.3.5.6, 6.3.5.7	-	J	ko:K02435	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CLDPALIF_01316	6.25e-268	camS	-	-	S	-	-	-	sex pheromone
CLDPALIF_01317	0.0	ligA	6.5.1.2	-	L	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	ko00000,ko00001,ko01000,ko03032,ko03400	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CLDPALIF_01318	0.0	pcrA	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase
CLDPALIF_01319	2.26e-118	acmA	3.2.1.17, 3.2.1.96	-	NU	ko:K01185,ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	mannosyl-glycoprotein
CLDPALIF_01321	2.62e-109	ydcK	-	-	S	ko:K03095	-	ko00000	Belongs to the SprT family
CLDPALIF_01322	5.48e-173	-	-	-	M	-	-	-	Glycosyltransferase sugar-binding region containing DXD motif
CLDPALIF_01323	0.0	epsU	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
CLDPALIF_01324	9.16e-287	-	-	-	M	-	-	-	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
CLDPALIF_01325	0.0	pacL	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
CLDPALIF_01326	9.83e-261	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
CLDPALIF_01327	1.91e-195	nadE	6.3.1.5	-	F	ko:K01916	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
CLDPALIF_01328	0.0	pncB	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CLDPALIF_01329	1.03e-261	-	-	-	M	-	-	-	Glycosyl transferases group 1
CLDPALIF_01330	3.02e-171	tagA	2.4.1.187	GT26	F	ko:K05946	ko05111,map05111	ko00000,ko00001,ko01000,ko01003	Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid
CLDPALIF_01331	3.68e-93	tagD	2.7.7.39	-	IM	ko:K00980	ko00564,map00564	ko00000,ko00001,ko01000	Glycerol-3-phosphate cytidylyltransferase
CLDPALIF_01332	1.87e-159	gntR1	-	-	K	ko:K03710	-	ko00000,ko03000	UTRA
CLDPALIF_01333	2.17e-232	-	-	-	-	-	-	-	-
CLDPALIF_01334	1.15e-54	oppA2	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
CLDPALIF_01335	7.83e-303	oppA2	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
CLDPALIF_01338	4.41e-305	npr	1.11.1.1	-	C	ko:K05910	-	ko00000,ko01000	NADH oxidase
CLDPALIF_01339	1.18e-13	-	-	-	-	-	-	-	-
CLDPALIF_01340	6.39e-32	-	-	-	S	-	-	-	transposase or invertase
CLDPALIF_01341	5.15e-208	slpX	-	-	S	-	-	-	SLAP domain
CLDPALIF_01342	1.76e-65	slpX	-	-	S	-	-	-	SLAP domain
CLDPALIF_01343	1.43e-186	-	-	-	K	-	-	-	SIS domain
CLDPALIF_01344	3.01e-154	rpiA1	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
CLDPALIF_01345	1.03e-237	XK27_10475	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
CLDPALIF_01346	1.93e-266	araT	2.6.1.57	-	E	ko:K00832,ko:K00841	ko00270,ko00300,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
CLDPALIF_01348	0.0	mgtA	3.6.3.2	-	P	ko:K01531	-	ko00000,ko01000	COG0474 Cation transport ATPase
CLDPALIF_01350	2.67e-148	glpQ1	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
CLDPALIF_01351	1.9e-153	-	-	-	G	-	-	-	Antibiotic biosynthesis monooxygenase
CLDPALIF_01352	9.01e-115	-	-	-	G	-	-	-	Histidine phosphatase superfamily (branch 1)
CLDPALIF_01353	8.92e-136	-	-	-	G	-	-	-	Phosphoglycerate mutase family
CLDPALIF_01354	5.68e-211	-	-	-	D	-	-	-	nuclear chromosome segregation
CLDPALIF_01355	1.33e-130	-	-	-	M	-	-	-	LysM domain protein
CLDPALIF_01356	2.57e-108	licC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLDPALIF_01357	6.31e-99	licC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLDPALIF_01358	1.83e-22	licC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLDPALIF_01359	1.25e-17	-	-	-	-	-	-	-	-
CLDPALIF_01360	2.77e-220	pphA	3.1.3.16	-	T	ko:K07313	-	ko00000,ko01000	Calcineurin-like phosphoesterase
CLDPALIF_01361	1.04e-41	-	-	-	-	-	-	-	-
CLDPALIF_01363	3.65e-90	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
CLDPALIF_01364	1.08e-145	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose acetyltransferase
CLDPALIF_01365	3.31e-79	psiE	-	-	S	ko:K13256	-	ko00000	Phosphate-starvation-inducible E
CLDPALIF_01367	6.58e-175	nfrA	1.5.1.38	-	C	ko:K19285	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	nitroreductase
CLDPALIF_01368	1.49e-290	amt	-	-	P	ko:K03320	-	ko00000,ko02000	ammonium transporter
CLDPALIF_01369	7.82e-80	-	-	-	-	-	-	-	-
CLDPALIF_01370	0.0	-	-	-	L	ko:K03724	-	ko00000,ko01000,ko03400	DEAD DEAH box helicase
CLDPALIF_01371	2.14e-312	-	-	-	P	-	-	-	P-loop Domain of unknown function (DUF2791)
CLDPALIF_01372	5.53e-173	-	-	-	S	-	-	-	TerB-C domain
CLDPALIF_01373	2.95e-123	rimL	-	-	J	ko:K03817	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
CLDPALIF_01374	1.87e-170	-	-	-	S	-	-	-	Alpha/beta hydrolase family
CLDPALIF_01375	1.4e-313	hslU	-	-	O	ko:K03667	-	ko00000,ko03110	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CLDPALIF_01376	4.67e-116	hslV	3.4.25.2	-	O	ko:K01419	-	ko00000,ko01000,ko01002	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CLDPALIF_01377	5.99e-180	xerC	-	-	D	ko:K03733,ko:K04763	-	ko00000,ko03036	Phage integrase, N-terminal SAM-like domain
CLDPALIF_01378	8.35e-315	trmFO	2.1.1.74	-	J	ko:K04094	-	ko00000,ko01000,ko03016,ko03036	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
CLDPALIF_01379	0.0	topA	5.99.1.2	-	L	ko:K03168	-	ko00000,ko01000,ko03032,ko03400	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CLDPALIF_01380	1.5e-195	dprA	-	-	LU	ko:K04096	-	ko00000	DNA protecting protein DprA
CLDPALIF_01381	1e-168	rnhB	3.1.26.4	-	L	ko:K03470	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CLDPALIF_01382	2.15e-198	rbgA	-	-	S	ko:K14540	-	ko00000,ko03009	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CLDPALIF_01383	2.4e-118	nhaP4	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
CLDPALIF_01384	7.2e-49	nhaP4	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
CLDPALIF_01385	3.67e-88	-	-	-	P	-	-	-	NhaP-type Na H and K H
CLDPALIF_01386	9.85e-49	yozE	-	-	S	-	-	-	Belongs to the UPF0346 family
CLDPALIF_01387	8.83e-187	degV3	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
CLDPALIF_01388	1.8e-143	hlyIII	-	-	S	ko:K11068	-	ko00000,ko02042	protein, hemolysin III
CLDPALIF_01389	8.5e-286	cca	2.7.7.72	-	J	ko:K00974	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
CLDPALIF_01390	3.86e-204	XK27_10395	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLDPALIF_01391	9.58e-112	-	3.4.21.96	-	S	ko:K01361	-	ko00000,ko01000,ko01002,ko03110	SLAP domain
CLDPALIF_01392	6.08e-161	yagE	-	-	E	-	-	-	Amino acid permease
CLDPALIF_01393	8.49e-85	-	-	-	E	-	-	-	amino acid
CLDPALIF_01394	2.42e-204	-	-	-	L	-	-	-	HNH nucleases
CLDPALIF_01395	1.11e-154	yfbR	-	-	S	ko:K07023	-	ko00000	HD containing hydrolase-like enzyme
CLDPALIF_01396	3.67e-225	-	-	-	G	-	-	-	Glycosyl hydrolases family 8
CLDPALIF_01397	4.75e-239	-	-	-	M	-	-	-	Glycosyl transferase
CLDPALIF_01398	1.34e-09	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
CLDPALIF_01399	9.69e-25	-	-	-	-	-	-	-	-
CLDPALIF_01400	0.0	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Membrane domain of glycerophosphoryl diester phosphodiesterase
CLDPALIF_01401	3.34e-92	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
CLDPALIF_01402	7.23e-244	ysdE	-	-	P	-	-	-	Citrate transporter
CLDPALIF_01403	1.43e-125	lemA	-	-	S	ko:K03744	-	ko00000	LemA family
CLDPALIF_01404	1.16e-207	htpX	-	-	O	ko:K03799	-	ko00000,ko00002,ko01000,ko01002	Belongs to the peptidase M48B family
CLDPALIF_01405	1.05e-222	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
CLDPALIF_01406	0.0	-	-	-	S	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_01407	1.19e-114	-	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Cobalt transport protein
CLDPALIF_01408	1.09e-223	pepI	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
CLDPALIF_01409	2.7e-114	-	-	-	G	-	-	-	Peptidase_C39 like family
CLDPALIF_01410	2.16e-207	-	-	-	M	-	-	-	NlpC/P60 family
CLDPALIF_01411	1.93e-32	-	-	-	G	-	-	-	Peptidase_C39 like family
CLDPALIF_01412	1.15e-204	-	-	-	S	-	-	-	EDD domain protein, DegV family
CLDPALIF_01413	2.06e-88	-	-	-	-	-	-	-	-
CLDPALIF_01414	0.0	FbpA	-	-	K	-	-	-	Fibronectin-binding protein
CLDPALIF_01415	0.0	carB1	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
CLDPALIF_01416	4.13e-255	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
CLDPALIF_01417	2.28e-221	rluD	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
CLDPALIF_01418	3.16e-102	lspA	3.4.23.36	-	MU	ko:K03101	ko03060,map03060	ko00000,ko00001,ko01000,ko01002	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CLDPALIF_01419	0.0	fhs	6.3.4.3	-	F	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the formate--tetrahydrofolate ligase family
CLDPALIF_01420	1.61e-70	-	-	-	-	-	-	-	-
CLDPALIF_01422	8.81e-40	-	-	-	M	-	-	-	Mycoplasma protein of unknown function, DUF285
CLDPALIF_01423	9.86e-146	-	-	-	F	ko:K15051	-	ko00000	DNA/RNA non-specific endonuclease
CLDPALIF_01424	3.39e-88	-	-	-	S	ko:K06915	-	ko00000	cog cog0433
CLDPALIF_01425	4.05e-242	-	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding protein-like domain
CLDPALIF_01426	5.55e-137	-	-	-	K	-	-	-	Transcriptional regulator, AbiEi antitoxin
CLDPALIF_01427	2.44e-210	-	-	-	S	-	-	-	Nucleotidyl transferase AbiEii toxin, Type IV TA system
CLDPALIF_01428	2.84e-240	galE	5.1.3.2	-	M	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family
CLDPALIF_01429	4.35e-185	lacM	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	beta-galactosidase
CLDPALIF_01430	0.0	lacL	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
CLDPALIF_01431	1.48e-210	lacR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
CLDPALIF_01432	0.0	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
CLDPALIF_01433	0.0	lacZ	3.2.1.23	-	G	ko:K12308	ko00052,map00052	ko00000,ko00001,ko01000	-beta-galactosidase
CLDPALIF_01434	3.56e-281	galK	2.7.1.6	-	F	ko:K00849	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CLDPALIF_01435	0.0	galT	2.7.7.12	-	G	ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	ko00000,ko00001,ko00002,ko01000	UDP-glucose--hexose-1-phosphate uridylyltransferase
CLDPALIF_01436	2e-299	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLDPALIF_01437	5.86e-90	XK27_05225	-	-	S	-	-	-	Tetratricopeptide repeat protein
CLDPALIF_01438	4.33e-95	XK27_05225	-	-	S	-	-	-	Tetratricopeptide repeat protein
CLDPALIF_01439	8.21e-57	hup	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
CLDPALIF_01440	1.34e-314	der	-	-	S	ko:K03977	-	ko00000,ko03009	GTPase that plays an essential role in the late steps of ribosome biogenesis
CLDPALIF_01441	1.4e-281	rpsA	-	-	J	ko:K02945	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein S1
CLDPALIF_01442	1.96e-148	cmk	2.7.4.25	-	F	ko:K00945	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the cytidylate kinase family. Type 1 subfamily
CLDPALIF_01443	1.13e-41	-	-	-	M	-	-	-	Lysin motif
CLDPALIF_01444	8.49e-146	ribU	-	-	U	-	-	-	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CLDPALIF_01445	4.65e-168	rluB	5.4.99.22	-	J	ko:K06178	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
CLDPALIF_01446	7.57e-135	scpB	-	-	D	ko:K06024	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CLDPALIF_01447	1.81e-169	scpA	-	-	D	ko:K05896	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CLDPALIF_01448	1.13e-81	ribT	-	-	K	ko:K02859	-	ko00000	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
CLDPALIF_01449	6.74e-213	xerD	-	-	D	ko:K04763	-	ko00000,ko03036	recombinase XerD
CLDPALIF_01450	1.21e-213	yitL	-	-	S	ko:K00243	-	ko00000	S1 domain
CLDPALIF_01451	0.0	pyk	2.7.1.40	-	G	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the pyruvate kinase family
CLDPALIF_01452	5.46e-233	pfkA	2.7.1.11	-	F	ko:K00850	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230	ko00000,ko00001,ko00002,ko01000,ko01009,ko03019	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
CLDPALIF_01453	8.64e-107	rlmH	2.1.1.177	-	J	ko:K00783	-	ko00000,ko01000,ko03009	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CLDPALIF_01454	3.17e-224	htrA	3.4.21.107	-	O	ko:K04771	ko01503,ko02020,map01503,map02020	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	serine protease
CLDPALIF_01455	1.19e-188	vicX	3.1.26.11	-	S	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	domain protein
CLDPALIF_01456	7.44e-192	yycI	-	-	S	-	-	-	YycH protein
CLDPALIF_01457	0.0	yycH	-	-	S	-	-	-	YycH protein
CLDPALIF_01458	0.0	vicK	2.7.13.3	-	T	ko:K07652	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
CLDPALIF_01459	3.98e-169	yycF	-	-	K	ko:K07668	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator
CLDPALIF_01461	1.09e-46	-	-	-	-	-	-	-	-
CLDPALIF_01463	4.19e-192	-	-	-	I	-	-	-	Acyl-transferase
CLDPALIF_01464	7.23e-201	arbx	-	-	M	-	-	-	Glycosyl transferase family 8
CLDPALIF_01465	1.91e-236	-	-	-	M	-	-	-	Glycosyl transferase family 8
CLDPALIF_01466	5.48e-235	-	-	-	M	-	-	-	Glycosyl transferase family 8
CLDPALIF_01467	3.92e-215	arbZ	-	-	I	-	-	-	Phosphate acyltransferases
CLDPALIF_01468	3.37e-50	-	-	-	S	-	-	-	Cytochrome B5
CLDPALIF_01469	5.61e-107	-	-	-	J	-	-	-	FR47-like protein
CLDPALIF_01470	3.11e-13	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
CLDPALIF_01473	2.84e-108	-	-	-	K	-	-	-	FR47-like protein
CLDPALIF_01474	0.0	lysS	6.1.1.6	-	J	ko:K04567	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family
CLDPALIF_01475	2.77e-248	dus	-	-	J	ko:K05540	-	ko00000,ko01000,ko03016	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLDPALIF_01476	3.91e-214	hslO	-	-	O	ko:K04083	-	ko00000,ko03110	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CLDPALIF_01477	0.0	ftsH	-	-	O	ko:K03798	-	ko00000,ko00002,ko01000,ko01002,ko03110	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLDPALIF_01478	2.75e-307	tilS	2.4.2.8, 6.3.4.19	-	J	ko:K04075,ko:K15780	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000,ko03016	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
CLDPALIF_01479	1.61e-81	-	-	-	J	ko:K07571	-	ko00000	S1 RNA binding domain
CLDPALIF_01480	7.52e-78	divIC	-	-	D	ko:K13052	-	ko00000,ko03036	Septum formation initiator
CLDPALIF_01481	7.32e-46	yabO	-	-	J	-	-	-	S4 domain protein
CLDPALIF_01482	0.0	mfd	-	-	L	ko:K03723	ko03420,map03420	ko00000,ko00001,ko01000,ko03400	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CLDPALIF_01483	1.89e-134	pth	3.1.1.29	-	J	ko:K01056	-	ko00000,ko01000,ko03012	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
CLDPALIF_01484	2.93e-234	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
CLDPALIF_01485	1.23e-166	-	-	-	S	-	-	-	(CBS) domain
CLDPALIF_01486	2.23e-80	rplQ	-	-	J	ko:K02879	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L17
CLDPALIF_01487	3.62e-218	rpoA	2.7.7.6	-	K	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLDPALIF_01488	3.82e-82	rpsK	-	-	J	ko:K02948	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CLDPALIF_01489	2.07e-73	rpsM	-	-	J	ko:K02952	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CLDPALIF_01490	1.89e-21	rpmJ	-	-	J	ko:K02919	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL36 family
CLDPALIF_01491	3.13e-46	infA	-	-	J	ko:K02518	-	ko00000,ko03012	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CLDPALIF_01492	3.7e-155	adk	2.7.4.3	-	F	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
CLDPALIF_01493	3.59e-301	secY	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
CLDPALIF_01494	2.86e-92	rplO	-	-	J	ko:K02876	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
CLDPALIF_01495	2.22e-34	rpmD	-	-	J	ko:K02907	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L30
CLDPALIF_01496	3.73e-110	rpsE	-	-	J	ko:K02988	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CLDPALIF_01497	4.84e-73	rplR	-	-	J	ko:K02881	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CLDPALIF_01498	7.18e-121	rplF	-	-	J	ko:K02933	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CLDPALIF_01499	7.94e-90	rpsH	-	-	J	ko:K02994	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CLDPALIF_01500	1e-39	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CLDPALIF_01501	1.23e-123	rplE	-	-	J	ko:K02931	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CLDPALIF_01502	3.03e-44	rplX	-	-	J	ko:K02895	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CLDPALIF_01503	3.62e-79	rplN	-	-	J	ko:K02874	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CLDPALIF_01504	1.56e-55	rpsQ	-	-	J	ko:K02961	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CLDPALIF_01505	1.45e-34	rpmC	-	-	J	ko:K02904	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uL29 family
CLDPALIF_01506	1.66e-100	rplP	-	-	J	ko:K02878	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CLDPALIF_01507	8.7e-157	rpsC	-	-	J	ko:K02982	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CLDPALIF_01508	9.07e-73	rplV	-	-	J	ko:K02890	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CLDPALIF_01509	1.14e-62	rpsS	-	-	J	ko:K02965	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CLDPALIF_01510	3.3e-197	rplB	-	-	J	ko:K02886	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CLDPALIF_01511	1.14e-63	rplW	-	-	J	ko:K02892	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
CLDPALIF_01512	4.68e-138	rplD	-	-	J	ko:K02926	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the polypeptide exit tunnel
CLDPALIF_01513	6.64e-146	rplC	-	-	J	ko:K02906	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CLDPALIF_01514	6.34e-66	rpsJ	-	-	J	ko:K02946	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Involved in the binding of tRNA to the ribosomes
CLDPALIF_01516	1.86e-114	ymdB	-	-	S	-	-	-	Macro domain protein
CLDPALIF_01517	1.49e-130	ylbE	-	-	GM	-	-	-	NAD(P)H-binding
CLDPALIF_01518	3.96e-37	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CLDPALIF_01521	5.14e-287	-	-	-	NU	-	-	-	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CLDPALIF_01522	6.01e-231	-	3.2.1.96, 3.5.1.28	GH73	M	ko:K01227,ko:K01447,ko:K13714,ko:K13731	ko00511,ko05100,map00511,map05100	ko00000,ko00001,ko01000	N-acetylmuramoyl-L-alanine amidase
CLDPALIF_01523	0.0	yjbQ	-	-	P	ko:K03455,ko:K03499	-	ko00000,ko02000	TrkA C-terminal domain protein
CLDPALIF_01524	2.47e-138	pcp	3.4.19.3	-	O	ko:K01304	-	ko00000,ko01000,ko01002	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
CLDPALIF_01525	1.68e-207	-	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
CLDPALIF_01526	1.98e-168	-	-	-	-	-	-	-	-
CLDPALIF_01527	7.48e-87	-	-	-	-	-	-	-	-
CLDPALIF_01528	3.22e-50	-	-	-	-	-	-	-	-
CLDPALIF_01529	4.51e-171	gpmA	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CLDPALIF_01530	5.18e-128	-	-	-	G	-	-	-	Aldose 1-epimerase
CLDPALIF_01531	1.51e-246	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
CLDPALIF_01532	1.03e-145	plsY1	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
CLDPALIF_01533	0.0	XK27_08315	-	-	M	-	-	-	Sulfatase
CLDPALIF_01534	3.9e-213	ldh3	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	lactate/malate dehydrogenase, alpha/beta C-terminal domain
CLDPALIF_01535	1.72e-92	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
CLDPALIF_01536	0.0	pheT	6.1.1.20	-	J	ko:K01890	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
CLDPALIF_01537	2.9e-254	pheS	6.1.1.20	-	J	ko:K01889	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CLDPALIF_01538	1.2e-202	cjaA	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_01539	7.91e-164	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_01540	1.96e-148	glnP7	-	-	P	ko:K02029	-	ko00000,ko00002,ko02000	ABC transporter permease
CLDPALIF_01541	1.81e-139	glnP9	-	-	P	ko:K02029	-	ko00000,ko00002,ko02000	ABC transporter, permease protein
CLDPALIF_01543	3.71e-76	yodB	-	-	K	-	-	-	Transcriptional regulator, HxlR family
CLDPALIF_01544	1.37e-173	spoU	-	-	J	ko:K03437	-	ko00000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLDPALIF_01545	5.58e-59	acyP	3.6.1.7	-	C	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	ko00000,ko00001,ko01000	Belongs to the acylphosphatase family
CLDPALIF_01546	2.43e-216	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
CLDPALIF_01547	1.13e-108	-	-	-	S	ko:K19055	-	ko00000,ko01000,ko03016	Aminoacyl-tRNA editing domain
CLDPALIF_01548	2.05e-107	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_01549	4.76e-170	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_01550	2.55e-163	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
CLDPALIF_01551	7.81e-169	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
CLDPALIF_01552	8.34e-116	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_01553	4.03e-75	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
CLDPALIF_01554	3.85e-97	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
CLDPALIF_01555	9.69e-292	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
CLDPALIF_01556	2.56e-179	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
CLDPALIF_01557	6.64e-94	-	-	-	-	-	-	-	-
CLDPALIF_01558	1.06e-159	dgk2	2.7.1.76	-	F	ko:K10353	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000	deoxynucleoside kinase
CLDPALIF_01559	9.85e-154	dak	2.7.1.76	-	F	ko:K10353	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000	deoxynucleoside kinase
CLDPALIF_01560	1.15e-173	nagB	3.5.99.6	-	G	ko:K02564	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
CLDPALIF_01561	3.08e-205	-	-	-	S	-	-	-	Aldo/keto reductase family
CLDPALIF_01562	2.1e-220	yufQ	-	-	S	ko:K02057	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
CLDPALIF_01563	8.8e-262	mglC	-	-	S	ko:K02057	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
CLDPALIF_01564	0.0	mglA	3.6.3.17	-	S	ko:K02056,ko:K06400	-	ko00000,ko00002,ko01000,ko02000	ABC transporter
CLDPALIF_01565	4.57e-232	tcsA	-	-	S	ko:K02058,ko:K07335	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein PnrA-like
CLDPALIF_01566	1.97e-255	tcsA	-	-	S	ko:K02058,ko:K07335	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein PnrA-like
CLDPALIF_01567	5.9e-130	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
CLDPALIF_01568	0.0	ppc	4.1.1.31	-	H	ko:K01595	ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
CLDPALIF_01569	0.0	-	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_01570	5.14e-248	-	-	-	S	-	-	-	DUF218 domain
CLDPALIF_01571	3.43e-155	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
CLDPALIF_01572	1.49e-141	ywdE	-	-	K	ko:K20375	ko02024,map02024	ko00000,ko00001,ko03000	Transcriptional regulator
CLDPALIF_01573	3.62e-202	-	-	-	EGP	-	-	-	Major facilitator Superfamily
CLDPALIF_01574	1.05e-67	-	-	-	-	-	-	-	-
CLDPALIF_01575	1.91e-200	mutR	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLDPALIF_01576	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
CLDPALIF_01577	1.68e-55	yoeB	-	-	S	ko:K19158	-	ko00000,ko01000,ko02048	YoeB-like toxin of bacterial type II toxin-antitoxin system
CLDPALIF_01578	2.49e-63	-	-	-	D	ko:K19159	-	ko00000,ko02048	Antitoxin component of a toxin-antitoxin (TA) module
CLDPALIF_01579	5.71e-263	napA	-	-	P	-	-	-	Sodium/hydrogen exchanger family
CLDPALIF_01580	0.0	cadA	-	-	P	-	-	-	P-type ATPase
CLDPALIF_01581	3.41e-107	ykuL	-	-	S	-	-	-	(CBS) domain
CLDPALIF_01582	5.11e-265	-	-	-	S	-	-	-	Membrane
CLDPALIF_01583	1.42e-58	-	-	-	-	-	-	-	-
CLDPALIF_01584	1.3e-26	-	-	-	S	-	-	-	D-Ala-teichoic acid biosynthesis protein
CLDPALIF_01585	0.0	dltA	6.1.1.13	-	H	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
CLDPALIF_01586	2.95e-304	dltB	-	-	M	ko:K03739	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	MBOAT, membrane-bound O-acyltransferase family
CLDPALIF_01587	4.98e-48	dltC	6.1.1.13	-	J	ko:K14188	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
CLDPALIF_01588	5.44e-315	dltD	-	-	M	ko:K03740	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
CLDPALIF_01589	1.97e-227	pbpX2	-	-	V	-	-	-	Beta-lactamase
CLDPALIF_01590	2.5e-172	-	-	-	S	-	-	-	Protein of unknown function (DUF975)
CLDPALIF_01591	1.34e-183	lysA2	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
CLDPALIF_01592	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
CLDPALIF_01593	1.96e-49	-	-	-	-	-	-	-	-
CLDPALIF_01594	0.0	ylbB	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
CLDPALIF_01595	1.68e-161	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_01596	3.09e-304	pts13C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLDPALIF_01597	7.86e-212	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
CLDPALIF_01598	0.0	clpE	-	-	O	ko:K03697,ko:K04086	-	ko00000,ko03110	AAA domain (Cdc48 subfamily)
CLDPALIF_01599	2.56e-278	ribBA	3.5.4.25, 4.1.99.12	-	H	ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate
CLDPALIF_01600	0.0	fusA	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CLDPALIF_01601	1.39e-106	rpsG	-	-	J	ko:K02992	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
CLDPALIF_01602	1.47e-91	rpsL	-	-	J	ko:K02950	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CLDPALIF_01603	7.71e-157	comC	3.4.23.43	-	NOU	ko:K02236	-	ko00000,ko00002,ko01000,ko02044	Bacterial Peptidase A24 N-terminal domain
CLDPALIF_01604	0.0	rpoC	2.7.7.6	-	K	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLDPALIF_01605	0.0	rpoB	2.7.7.6	-	K	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLDPALIF_01606	0.0	clpC	-	-	O	ko:K03696	ko01100,map01100	ko00000,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
CLDPALIF_01607	1.09e-58	-	-	-	L	-	-	-	Transposase
CLDPALIF_01608	1.62e-276	alr	5.1.1.1, 5.1.1.5	-	E	ko:K01775,ko:K20707	ko00473,ko01100,ko01502,map00473,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLDPALIF_01609	9.39e-80	acpS	2.7.8.7	-	I	ko:K00997	ko00770,map00770	ko00000,ko00001,ko01000	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
CLDPALIF_01610	0.0	cshA	3.6.4.13	-	F	ko:K05592	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
CLDPALIF_01611	0.0	murF	6.3.2.10	-	M	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
CLDPALIF_01612	1.07e-52	rpmE	-	-	J	ko:K02909	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L31
CLDPALIF_01613	0.0	dexB	3.2.1.70	-	G	ko:K01215	-	ko00000,ko01000	Alpha amylase, catalytic domain protein
CLDPALIF_01614	1.64e-200	yhaX	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
CLDPALIF_01615	0.0	-	-	-	E	-	-	-	amino acid
CLDPALIF_01616	1.33e-295	glyA	2.1.2.1	-	E	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CLDPALIF_01617	1.17e-56	-	-	-	-	-	-	-	-
CLDPALIF_01618	8.68e-69	-	-	-	-	-	-	-	-
CLDPALIF_01619	3.44e-238	-	-	-	C	-	-	-	FMN-dependent dehydrogenase
CLDPALIF_01620	2.07e-178	-	-	-	P	-	-	-	Voltage gated chloride channel
CLDPALIF_01621	7.55e-53	-	-	-	S	-	-	-	Transglycosylase associated protein
CLDPALIF_01622	5.02e-155	-	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
CLDPALIF_01625	2.54e-247	-	-	-	L	-	-	-	Probable transposase
CLDPALIF_01626	1.81e-110	-	-	-	L	-	-	-	Resolvase, N terminal domain
CLDPALIF_01631	0.0	XK27_00500	-	-	L	-	-	-	the current gene model (or a revised gene model) may contain a
CLDPALIF_01633	3.74e-125	-	-	-	-	-	-	-	-
CLDPALIF_01634	1.33e-92	-	-	-	-	-	-	-	-
CLDPALIF_01635	4.06e-88	celD	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
CLDPALIF_01636	8.23e-09	-	-	-	M	-	-	-	Mycoplasma protein of unknown function, DUF285
CLDPALIF_01639	0.0	-	-	-	-	-	-	-	-
CLDPALIF_01641	2.77e-82	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
CLDPALIF_01643	1.94e-47	-	-	-	-	-	-	-	-
CLDPALIF_01644	2.71e-39	-	-	-	S	ko:K07473	-	ko00000,ko02048	RelB antitoxin
CLDPALIF_01645	1.09e-229	endA	-	-	F	ko:K15051	-	ko00000	DNA RNA non-specific endonuclease
CLDPALIF_01651	8.79e-163	lepB	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
CLDPALIF_01654	2.3e-161	-	-	-	-	-	-	-	-
CLDPALIF_01655	4.52e-114	-	-	-	S	-	-	-	Protein of unknown function (DUF1275)
CLDPALIF_01656	5.57e-22	-	-	-	S	-	-	-	Protein of unknown function (DUF1275)
CLDPALIF_01657	0.0	arlS	2.7.13.3	-	T	ko:K18940	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
CLDPALIF_01658	3.52e-163	csrR	-	-	K	-	-	-	response regulator
CLDPALIF_01659	2.19e-125	ylbN	-	-	S	ko:K07040	-	ko00000	Uncharacterized ACR, COG1399
CLDPALIF_01660	4.63e-275	ylbM	-	-	S	-	-	-	Belongs to the UPF0348 family
CLDPALIF_01661	5.09e-78	rsfS	-	-	J	ko:K09710	-	ko00000,ko03009	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
CLDPALIF_01662	9.22e-141	yqeK	-	-	H	-	-	-	Hydrolase, HD family
CLDPALIF_01663	1.77e-157	nadD	2.7.7.18	-	H	ko:K00969	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CLDPALIF_01664	5.03e-256	yqeH	-	-	S	ko:K06948	-	ko00000,ko03009	Ribosome biogenesis GTPase YqeH
CLDPALIF_01665	6.85e-109	yqeG	-	-	S	ko:K07015	-	ko00000	HAD phosphatase, family IIIA
CLDPALIF_01666	3.01e-255	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
CLDPALIF_01667	1.25e-192	add	3.5.4.2, 3.5.4.4	-	F	ko:K01488,ko:K02029,ko:K21053	ko00230,ko01100,ko05340,map00230,map01100,map05340	ko00000,ko00001,ko00002,ko01000,ko02000	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CLDPALIF_01668	8.69e-76	rplT	-	-	J	ko:K02887	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CLDPALIF_01669	9.64e-38	rpmI	-	-	J	ko:K02916	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL35 family
CLDPALIF_01670	1.07e-93	infC	-	-	J	ko:K02520	-	ko00000,ko03012,ko03029	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CLDPALIF_01671	6.18e-123	rihC	3.2.2.1	-	F	ko:K01239,ko:K01250,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	Nucleoside
CLDPALIF_01672	2.17e-130	-	-	-	E	ko:K02054	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
CLDPALIF_01673	0.0	-	-	-	S	-	-	-	Phage Terminase
CLDPALIF_01676	9.93e-74	-	-	-	S	-	-	-	Phage terminase, small subunit
CLDPALIF_01680	2.71e-49	-	-	-	S	-	-	-	VRR_NUC
CLDPALIF_01693	7.64e-39	-	-	-	S	-	-	-	Domain of Unknown Function (DUF1599)
CLDPALIF_01698	0.0	-	-	-	S	ko:K06919	-	ko00000	Phage plasmid primase, P4
CLDPALIF_01699	5.43e-51	-	-	-	S	-	-	-	Protein of unknown function (DUF669)
CLDPALIF_01701	4.49e-92	-	-	-	L	-	-	-	Helicase C-terminal domain protein
CLDPALIF_01702	1.39e-143	adh2	1.1.1.1	-	E	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	alcohol dehydrogenase
CLDPALIF_01703	1.2e-214	lctP	-	-	C	ko:K03303	-	ko00000,ko02000	L-lactate permease
CLDPALIF_01704	6.79e-190	-	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
CLDPALIF_01705	8.74e-62	-	-	-	-	-	-	-	-
CLDPALIF_01706	2.88e-105	msrB	1.8.4.12	-	O	ko:K07305	-	ko00000,ko01000	peptide methionine sulfoxide reductase
CLDPALIF_01707	0.0	pepX	3.4.14.11	-	E	ko:K01281	-	ko00000,ko01000,ko01002	Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
CLDPALIF_01708	6.78e-24	-	-	-	S	-	-	-	Alpha beta hydrolase
CLDPALIF_01709	2.48e-80	-	-	-	S	-	-	-	Alpha beta hydrolase
CLDPALIF_01710	8.51e-50	-	-	-	-	-	-	-	-
CLDPALIF_01711	4.3e-66	-	-	-	-	-	-	-	-
CLDPALIF_01712	1.14e-189	supH	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
CLDPALIF_01713	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
CLDPALIF_01714	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
CLDPALIF_01715	1.82e-86	yusI	1.20.4.1	-	P	ko:K00537	-	ko00000,ko01000	Belongs to the ArsC family
CLDPALIF_01716	1.23e-227	lipA	-	-	I	-	-	-	Carboxylesterase family
CLDPALIF_01719	7.68e-129	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
CLDPALIF_01721	4e-79	-	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
CLDPALIF_01722	6.03e-215	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLDPALIF_01723	5.22e-18	-	-	-	S	-	-	-	Domain of unknown function (DUF3173)
CLDPALIF_01724	5.45e-72	-	-	-	-	-	-	-	-
CLDPALIF_01726	5.2e-119	-	-	-	D	-	-	-	ftsk spoiiie
CLDPALIF_01728	2.13e-53	-	-	-	-	-	-	-	-
CLDPALIF_01729	4.61e-304	sthIR	3.1.21.5	-	L	ko:K01156	-	ko00000,ko01000,ko02048	Type III restriction enzyme, res subunit
CLDPALIF_01730	4.67e-75	-	2.1.1.72	-	L	ko:K07316	-	ko00000,ko01000,ko02048	DNA methylase
CLDPALIF_01731	3.6e-106	-	-	-	C	-	-	-	Flavodoxin
CLDPALIF_01732	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
CLDPALIF_01733	5.81e-310	ynbB	-	-	P	-	-	-	aluminum resistance
CLDPALIF_01734	0.0	speA	4.1.1.17, 4.1.1.18, 4.1.1.19	-	E	ko:K01581,ko:K01582,ko:K01585	ko00310,ko00330,ko00480,ko00960,ko01100,ko01110,ko01130,map00310,map00330,map00480,map00960,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Orn/Lys/Arg decarboxylase, C-terminal domain
CLDPALIF_01735	0.0	-	-	-	E	-	-	-	Amino acid permease
CLDPALIF_01736	7.88e-121	-	-	-	C	-	-	-	Pyridoxamine 5'-phosphate oxidase
CLDPALIF_01737	0.0	pepV	3.5.1.18	-	E	ko:K01270,ko:K01274,ko:K01439	ko00300,ko00480,ko01100,ko01120,ko01230,map00300,map00480,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	dipeptidase PepV
CLDPALIF_01738	3.03e-145	ybgF	-	-	E	ko:K02205,ko:K03293,ko:K16235,ko:K16236	-	ko00000,ko02000	amino acid
CLDPALIF_01739	1.31e-16	mmuM	2.1.1.10	-	H	ko:K00547	ko00270,ko01100,ko01110,map00270,map01100,map01110	ko00000,ko00001,ko01000	homocysteine S-methyltransferase
CLDPALIF_01740	2.95e-84	crcB	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLDPALIF_01741	7.64e-88	crcB1	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLDPALIF_01742	2.15e-194	-	-	-	L	-	-	-	Phage integrase, N-terminal SAM-like domain
CLDPALIF_01743	2.09e-105	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
CLDPALIF_01744	1.01e-98	menA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	UbiA prenyltransferase family
CLDPALIF_01745	7.02e-36	-	-	-	-	-	-	-	-
CLDPALIF_01746	2.13e-42	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLDPALIF_01747	9.96e-45	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLDPALIF_01748	8.08e-108	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLDPALIF_01749	6.03e-218	fba	4.1.2.13, 4.1.2.29	-	G	ko:K01624,ko:K03339	ko00010,ko00030,ko00051,ko00562,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00562,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-1,6-bisphosphate aldolase, class II
CLDPALIF_01750	0.0	argS	6.1.1.19	-	J	ko:K01887	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Arginyl-tRNA synthetase
CLDPALIF_01751	5.6e-129	-	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
CLDPALIF_01752	2.23e-197	nnrD	4.2.1.136, 5.1.99.6	-	H	ko:K17758,ko:K17759	-	ko00000,ko01000	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CLDPALIF_01753	9.64e-307	dacA	3.4.16.4	-	M	ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
CLDPALIF_01755	1.59e-61	pspC	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	PspC domain
CLDPALIF_01756	3.54e-300	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
CLDPALIF_01757	6.97e-289	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
CLDPALIF_01758	8.71e-29	-	-	-	K	ko:K07729	-	ko00000,ko03000	Helix-turn-helix XRE-family like proteins
CLDPALIF_01760	4.4e-86	-	-	-	K	-	-	-	LytTr DNA-binding domain
CLDPALIF_01761	6.11e-66	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
CLDPALIF_01762	4.57e-135	-	3.5.1.124	-	S	ko:K03152	-	ko00000,ko01000,ko01002	DJ-1/PfpI family
CLDPALIF_01763	1.56e-152	-	3.8.1.2	-	S	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
CLDPALIF_01764	2.02e-169	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
CLDPALIF_01765	3.16e-160	-	-	-	G	-	-	-	Belongs to the phosphoglycerate mutase family
CLDPALIF_01766	8.43e-206	-	-	-	P	ko:K16264	-	ko00000,ko02000	cation diffusion facilitator family transporter
CLDPALIF_01767	2.42e-33	-	-	-	-	-	-	-	-
CLDPALIF_01768	9.82e-164	gpmA1	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CLDPALIF_01769	2.32e-234	-	-	-	S	-	-	-	AAA domain
CLDPALIF_01770	8.69e-66	-	-	-	-	-	-	-	-
CLDPALIF_01771	0.0	pepC	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
CLDPALIF_01772	1.11e-69	-	-	-	-	-	-	-	-
CLDPALIF_01773	5.22e-131	dut	3.6.1.23	-	F	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	dUTP diphosphatase
CLDPALIF_01774	0.0	radA	-	-	O	ko:K04485	-	ko00000,ko03400	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CLDPALIF_01775	0.0	gltX	6.1.1.24	-	J	ko:K09698	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CLDPALIF_01776	0.0	cysS	6.1.1.16	-	J	ko:K01883	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
CLDPALIF_01777	2.45e-98	mrnC	-	-	J	ko:K11145	-	ko00000,ko01000,ko03009	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
CLDPALIF_01778	2.69e-178	trmH	2.1.1.185	-	J	ko:K03218	-	ko00000,ko01000,ko03009	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLDPALIF_01779	1.55e-122	comX	-	-	K	ko:K03088,ko:K03091,ko:K12296	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko03000,ko03021	Belongs to the sigma-70 factor family
CLDPALIF_01780	1.19e-45	-	-	-	-	-	-	-	-
CLDPALIF_01781	0.0	gntK	2.7.1.12	-	G	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko01000	Belongs to the FGGY kinase family
CLDPALIF_01782	0.0	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CLDPALIF_01783	3.73e-33	secE	-	-	U	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
CLDPALIF_01784	5e-130	nusG	-	-	K	ko:K02601	-	ko00000,ko03009,ko03021	Participates in transcription elongation, termination and antitermination
CLDPALIF_01785	2.69e-90	rplK	-	-	J	ko:K02867	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CLDPALIF_01786	1.05e-160	rplA	-	-	J	ko:K02863	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
CLDPALIF_01787	5.48e-201	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
CLDPALIF_01788	1.13e-210	pstC	-	-	P	ko:K02037	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	probably responsible for the translocation of the substrate across the membrane
CLDPALIF_01789	2.48e-196	pstA	-	-	P	ko:K02038	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphate transport system permease protein PstA
CLDPALIF_01790	5.24e-187	pstB2	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
CLDPALIF_01791	3.83e-178	pstB1	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
CLDPALIF_01792	2.89e-151	phoU	-	-	P	ko:K02039	-	ko00000	Plays a role in the regulation of phosphate uptake
CLDPALIF_01793	5.61e-118	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
CLDPALIF_01795	3.72e-111	rplJ	-	-	J	ko:K02864	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CLDPALIF_01796	1.61e-72	rplL	-	-	J	ko:K02935	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
CLDPALIF_01797	9.32e-189	-	2.1.1.172	-	J	ko:K00564,ko:K10716	-	ko00000,ko01000,ko02000,ko03009	Ion channel
CLDPALIF_01798	5.31e-149	rsmC	2.1.1.172	-	J	ko:K00564	-	ko00000,ko01000,ko03009	Methyltransferase
CLDPALIF_01799	6.15e-36	-	-	-	-	-	-	-	-
CLDPALIF_01800	1.08e-117	tadA	3.5.4.33	-	F	ko:K11991	-	ko00000,ko01000,ko03016	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
CLDPALIF_01801	0.0	dnaX	2.7.7.7	-	L	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLDPALIF_01802	4.56e-136	-	-	-	M	-	-	-	family 8
CLDPALIF_01803	1.15e-47	-	-	-	M	-	-	-	lipopolysaccharide 3-alpha-galactosyltransferase activity
CLDPALIF_01804	6.31e-68	yaaK	-	-	S	ko:K09747	-	ko00000	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CLDPALIF_01805	9.21e-142	recR	-	-	L	ko:K06187	ko03440,map03440	ko00000,ko00001,ko03400	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CLDPALIF_01806	1.18e-46	-	-	-	S	-	-	-	Protein of unknown function (DUF2508)
CLDPALIF_01807	1.15e-146	tmk	2.7.4.9	-	F	ko:K00943	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CLDPALIF_01808	1.58e-70	yaaQ	-	-	S	-	-	-	Cyclic-di-AMP receptor
CLDPALIF_01809	8.4e-199	holB	2.7.7.7	-	L	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
CLDPALIF_01810	1.4e-80	yabA	-	-	L	-	-	-	Involved in initiation control of chromosome replication
CLDPALIF_01811	3.05e-200	rsmI	2.1.1.198	-	H	ko:K07056	-	ko00000,ko01000,ko03009	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CLDPALIF_01812	4.27e-167	fat	3.1.2.21	-	I	ko:K01071	ko00061,ko01100,map00061,map01100	ko00000,ko00001,ko01000,ko01004	Acyl-ACP thioesterase
CLDPALIF_01813	8.72e-111	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
CLDPALIF_01814	3.69e-171	yeaZ	2.3.1.234	-	O	ko:K01409,ko:K14742	-	ko00000,ko01000,ko03016	Universal bacterial protein YeaZ
CLDPALIF_01815	3.93e-125	rimI	2.3.1.128	-	K	ko:K03789	-	ko00000,ko01000,ko03009	Ribosomal-protein-alanine acetyltransferase
CLDPALIF_01816	5.79e-247	tsaD	2.3.1.234	-	J	ko:K01409	-	ko00000,ko01000,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CLDPALIF_01817	1.28e-311	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
CLDPALIF_01818	5.51e-46	-	-	-	S	-	-	-	Transposase C of IS166 homeodomain
CLDPALIF_01819	4.01e-84	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
CLDPALIF_01820	9.48e-31	-	-	-	-	-	-	-	-
CLDPALIF_01821	3.06e-53	bbsF_1	2.8.3.19	-	C	ko:K18702	-	ko00000,ko01000	Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate
CLDPALIF_01822	6.43e-230	frc	2.8.3.16	-	C	ko:K07749	-	ko00000,ko01000	Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate
CLDPALIF_01823	0.0	spxB	1.2.3.3, 1.2.5.1, 2.2.1.6, 4.1.1.8	-	EH	ko:K00156,ko:K00158,ko:K01577,ko:K01652	ko00290,ko00620,ko00630,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00620,map00630,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TPP enzyme family
CLDPALIF_01824	0.0	ydiF	-	-	S	ko:K06158	-	ko00000,ko03012	ABC transporter, ATP-binding protein
CLDPALIF_01825	8.74e-146	rex	-	-	K	ko:K01926	-	ko00000,ko03000	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
CLDPALIF_01826	2.02e-12	-	-	-	S	-	-	-	Phage minor structural protein
CLDPALIF_01836	1.32e-49	-	-	-	S	-	-	-	Bacteriophage holin of superfamily 6 (Holin_LLH)
CLDPALIF_01837	8.51e-125	-	-	-	M	-	-	-	hydrolase, family 25
CLDPALIF_01839	9.67e-15	-	-	-	-	-	-	-	-
CLDPALIF_01840	0.0	yfkN	3.1.3.6, 3.1.4.16	-	F	ko:K01119	ko00230,ko00240,map00230,map00240	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
CLDPALIF_01841	1.25e-38	-	-	-	S	-	-	-	Protein of unknown function (DUF2929)
CLDPALIF_01842	0.0	dnaE	2.7.7.7	-	L	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase
CLDPALIF_01843	5.61e-38	-	-	-	M	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CLDPALIF_01845	3.17e-189	-	-	-	S	-	-	-	Putative ABC-transporter type IV
CLDPALIF_01847	4.11e-124	potE	-	-	E	-	-	-	thought to be involved in transport amino acids across the membrane
CLDPALIF_01849	2.67e-35	-	-	-	K	ko:K07729	-	ko00000,ko03000	Helix-turn-helix XRE-family like proteins
CLDPALIF_01850	6.66e-27	-	-	-	S	-	-	-	CAAX protease self-immunity
CLDPALIF_01852	1.25e-94	-	-	-	K	-	-	-	Helix-turn-helix domain
CLDPALIF_01853	4.82e-144	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLDPALIF_01856	2.41e-39	-	-	-	-	-	-	-	-
CLDPALIF_01857	3.85e-180	pnuC	-	-	H	ko:K03811	-	ko00000,ko02000	nicotinamide mononucleotide transporter
CLDPALIF_01858	7.8e-10	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
CLDPALIF_01859	1.27e-58	mdtG2	-	-	EGP	ko:K08161	-	ko00000,ko02000	Transporter, major facilitator family protein
CLDPALIF_01860	6.74e-212	mdtG2	-	-	EGP	ko:K08161	-	ko00000,ko02000	Transporter, major facilitator family protein
CLDPALIF_01861	7.62e-223	-	-	-	-	-	-	-	-
CLDPALIF_01862	2.2e-79	lysM	-	-	M	-	-	-	LysM domain
CLDPALIF_01863	0.0	pepN	3.4.11.2	-	E	ko:K01256	ko00480,ko01100,map00480,map01100	ko00000,ko00001,ko01000,ko01002	aminopeptidase
CLDPALIF_01864	0.0	dtpT	-	-	U	ko:K03305	-	ko00000	amino acid peptide transporter
CLDPALIF_01865	6.93e-34	-	-	-	S	-	-	-	Sugar efflux transporter for intercellular exchange
CLDPALIF_01866	5.3e-92	-	-	-	K	-	-	-	LytTr DNA-binding domain
CLDPALIF_01867	3.15e-121	-	-	-	S	-	-	-	membrane
CLDPALIF_01868	2.61e-23	-	-	-	-	-	-	-	-
CLDPALIF_01869	3.58e-251	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
CLDPALIF_01870	9.18e-202	-	-	-	C	-	-	-	Domain of unknown function (DUF4931)
CLDPALIF_01871	5.5e-155	-	-	-	-	-	-	-	-
CLDPALIF_01872	4.37e-132	-	-	-	GM	-	-	-	NmrA-like family
CLDPALIF_01873	5.5e-154	pyrE	2.4.2.10	-	F	ko:K00762	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CLDPALIF_01874	1.56e-164	pyrF	4.1.1.23	-	F	ko:K01591	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
CLDPALIF_01875	8.81e-212	pyrD	1.3.1.14, 1.3.98.1	-	F	ko:K00226,ko:K17828	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
CLDPALIF_01876	2.9e-122	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CLDPALIF_01877	9.05e-231	pyrB	2.1.3.2	-	F	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the ATCase OTCase family
CLDPALIF_01878	5.61e-311	pyrC	3.5.2.3	-	F	ko:K01465	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
CLDPALIF_01879	4.22e-269	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
CLDPALIF_01880	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
CLDPALIF_01881	4.69e-105	lctP	-	-	C	ko:K03303	-	ko00000,ko02000	L-lactate permease
CLDPALIF_01883	2.46e-113	tpx	1.11.1.15	-	O	ko:K11065	-	ko00000,ko01000	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CLDPALIF_01884	1.83e-316	-	-	-	EGP	ko:K08368	-	ko00000,ko02000	Sugar (and other) transporter
CLDPALIF_01885	3.14e-137	-	-	-	-	-	-	-	-
CLDPALIF_01886	6.63e-147	crp2	-	-	K	ko:K10914,ko:K21562	ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111	ko00000,ko00001,ko03000	helix_turn_helix, cAMP Regulatory protein
CLDPALIF_01887	0.0	copA	3.6.3.3, 3.6.3.5, 3.6.3.54	-	P	ko:K01534,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	P-type ATPase
CLDPALIF_01888	3.27e-58	-	-	-	S	-	-	-	Cupredoxin-like domain
CLDPALIF_01889	5.94e-75	-	-	-	S	-	-	-	Cupredoxin-like domain
CLDPALIF_01890	2.23e-48	-	-	-	-	-	-	-	-
CLDPALIF_01894	1.26e-176	-	-	-	-	-	-	-	-
CLDPALIF_01895	3.61e-212	-	-	-	V	-	-	-	ABC transporter transmembrane region
CLDPALIF_01896	7.23e-50	-	-	-	S	ko:K11621	ko02020,map02020	ko00000,ko00001	Putative adhesin
CLDPALIF_01897	2.37e-263	-	-	-	S	-	-	-	Phage Terminase
CLDPALIF_01899	1.71e-72	-	-	-	S	-	-	-	Phage terminase, small subunit
CLDPALIF_01903	3.85e-49	-	-	-	S	-	-	-	VRR_NUC
CLDPALIF_01914	0.0	-	-	-	S	ko:K06919	-	ko00000	Phage plasmid primase, P4
CLDPALIF_01915	1e-23	-	-	-	S	-	-	-	Protein of unknown function (DUF669)
CLDPALIF_01916	1.07e-89	-	-	-	L	-	-	-	Helicase C-terminal domain protein
CLDPALIF_01917	1.22e-192	pmrA	-	-	EGP	ko:K08161	-	ko00000,ko02000	MFS_1 like family
CLDPALIF_01918	2.6e-37	-	-	-	-	-	-	-	-
CLDPALIF_01919	1.29e-54	ptsH	-	-	G	ko:K11189	-	ko00000,ko02000	phosphocarrier protein HPR
CLDPALIF_01920	0.0	ptsI	2.7.3.9	-	G	ko:K08483	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLDPALIF_01921	6.28e-87	spxA	-	-	K	ko:K16509	-	ko00000	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
CLDPALIF_01922	1.5e-178	mecA	-	-	NOT	ko:K16511	-	ko00000	Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
CLDPALIF_01923	8.81e-204	coiA	-	-	S	ko:K06198	-	ko00000	Competence protein
CLDPALIF_01924	5.74e-148	yjbH	-	-	Q	-	-	-	Thioredoxin
CLDPALIF_01925	2.44e-143	-	-	-	S	-	-	-	CYTH
CLDPALIF_01926	1.7e-147	yjbM	2.7.6.5	-	S	ko:K07816	ko00230,map00230	ko00000,ko00001,ko01000	RelA SpoT domain protein
CLDPALIF_01927	1.91e-195	nadK	2.7.1.23	-	F	ko:K00858	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CLDPALIF_01928	7.96e-221	rluD2	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
CLDPALIF_01929	0.0	mycA	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
CLDPALIF_01930	3.77e-122	-	-	-	S	-	-	-	SNARE associated Golgi protein
CLDPALIF_01931	4.97e-64	-	-	-	S	-	-	-	Metal binding domain of Ada
CLDPALIF_01932	0.0	-	-	-	P	-	-	-	Cation transporter/ATPase, N-terminus
CLDPALIF_01933	3.03e-177	lysR5	-	-	K	-	-	-	LysR substrate binding domain
CLDPALIF_01934	2.4e-297	arcA	3.5.3.6	-	E	ko:K01478	ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130	ko00000,ko00001,ko01000	Arginine
CLDPALIF_01935	5.39e-84	argF	2.1.3.3	-	E	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CLDPALIF_01936	2.01e-135	arcC	2.7.2.2	-	E	ko:K00926	ko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200	ko00000,ko00001,ko01000	Belongs to the carbamate kinase family
CLDPALIF_01937	1.76e-122	citX	2.7.7.61	-	HI	ko:K05964	ko02020,map02020	ko00000,ko00001,ko01000	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
CLDPALIF_01938	1.07e-287	-	-	-	S	-	-	-	Sterol carrier protein domain
CLDPALIF_01939	4.04e-29	-	-	-	-	-	-	-	-
CLDPALIF_01940	6.93e-140	-	-	-	K	-	-	-	LysR substrate binding domain
CLDPALIF_01941	1.13e-126	-	-	-	-	-	-	-	-
CLDPALIF_01942	5.04e-154	-	-	-	G	-	-	-	Antibiotic biosynthesis monooxygenase
CLDPALIF_01943	0.0	clpE	-	-	O	ko:K03697	-	ko00000,ko03110	Belongs to the ClpA ClpB family
CLDPALIF_01944	5.93e-60	XK27_09445	-	-	S	-	-	-	Domain of unknown function (DUF1827)
CLDPALIF_01945	0.0	prfC	-	-	J	ko:K02837	-	ko00000,ko03012	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CLDPALIF_01946	1.76e-181	hlyX	-	-	S	ko:K03699	-	ko00000,ko02042	Transporter associated domain
CLDPALIF_01947	7.76e-98	-	-	-	-	-	-	-	-
CLDPALIF_01948	1.74e-111	-	-	-	-	-	-	-	-
CLDPALIF_01949	2.79e-185	recX	-	-	S	ko:K03565	-	ko00000,ko03400	Regulatory protein RecX
CLDPALIF_01950	0.0	rumA_1	2.1.1.190, 2.1.1.35	-	J	ko:K00557,ko:K03215	-	ko00000,ko01000,ko03009,ko03016	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CLDPALIF_01951	1.94e-150	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
CLDPALIF_01952	1.04e-48	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
CLDPALIF_01953	7.74e-61	-	-	-	-	-	-	-	-
CLDPALIF_01954	4.31e-204	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
CLDPALIF_01955	2e-149	-	-	-	S	-	-	-	Peptidase family M23
CLDPALIF_01956	1.22e-136	msrA	1.8.4.11, 1.8.4.12	-	O	ko:K07304,ko:K12267	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CLDPALIF_01958	2.83e-205	yitT	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLDPALIF_01959	5.47e-151	-	-	-	-	-	-	-	-
CLDPALIF_01960	3.06e-202	thrB	2.7.1.39	-	F	ko:K00872	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
CLDPALIF_01961	2.95e-283	hom	1.1.1.3	-	E	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	homoserine dehydrogenase
CLDPALIF_01962	0.0	thrC	4.2.3.1	-	E	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Threonine synthase
CLDPALIF_01963	0.0	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
CLDPALIF_01964	6.83e-133	yrgI	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Histidine phosphatase superfamily (branch 1)
CLDPALIF_01965	9.91e-150	-	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Ham1 family
CLDPALIF_01966	9.67e-104	-	-	-	-	-	-	-	-
CLDPALIF_01967	6.74e-309	cpdA	-	-	S	-	-	-	Calcineurin-like phosphoesterase
CLDPALIF_01968	1.68e-277	ypsC	-	-	L	ko:K07444	-	ko00000,ko01000	Belongs to the methyltransferase superfamily
CLDPALIF_01969	1.85e-90	gpsB	-	-	D	-	-	-	Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
CLDPALIF_01970	1.18e-139	ypsA	-	-	S	-	-	-	Belongs to the UPF0398 family
CLDPALIF_01971	8.47e-152	recU	-	-	L	ko:K03700	-	ko00000,ko03400	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
CLDPALIF_01972	0.0	ponA	2.4.1.129, 3.4.16.4	GT51	M	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein 1A
CLDPALIF_01973	1.92e-148	nth	4.2.99.18	-	L	ko:K10773	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CLDPALIF_01974	6.91e-149	dnaD	-	-	L	ko:K02086	-	ko00000	DnaD domain protein
CLDPALIF_01975	0.0	asnS	6.1.1.22	-	J	ko:K01893	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Asparaginyl-tRNA synthetase
CLDPALIF_01976	1.66e-116	ypmB	-	-	S	-	-	-	Protein conserved in bacteria
CLDPALIF_01977	0.0	dinG	3.6.4.12	-	L	ko:K03722	-	ko00000,ko01000,ko03400	helicase involved in DNA repair and perhaps also replication
CLDPALIF_01978	0.0	addA	3.6.4.12	-	L	ko:K16898	-	ko00000,ko01000,ko03400	ATP-dependent helicase nuclease subunit A
CLDPALIF_01979	0.0	rexB	3.6.4.12	-	L	ko:K16899	-	ko00000,ko01000,ko03400	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
CLDPALIF_01980	3.02e-173	mvk	2.7.1.36	-	I	ko:K00869	ko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146	ko00000,ko00001,ko00002,ko01000	GHMP kinases N terminal domain
CLDPALIF_01981	5.87e-228	mvaD	4.1.1.33	-	I	ko:K01597	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	diphosphomevalonate decarboxylase
CLDPALIF_01982	6.67e-261	mvaK2	2.7.4.2	-	I	ko:K00938	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	phosphomevalonate kinase
CLDPALIF_01983	4.87e-236	fni	5.3.3.2	-	C	ko:K01823	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
CLDPALIF_01984	1.84e-87	-	3.1.3.102, 3.1.3.104	-	G	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Sucrose-6F-phosphate phosphohydrolase
CLDPALIF_01985	1.24e-53	-	3.1.3.102, 3.1.3.104, 3.1.3.23	-	G	ko:K07757,ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Sucrose-6F-phosphate phosphohydrolase
CLDPALIF_01986	0.0	rsmF	-	-	J	-	-	-	NOL1 NOP2 sun family protein
CLDPALIF_01987	4.4e-215	-	-	-	-	-	-	-	-
CLDPALIF_01988	4.01e-184	-	-	-	-	-	-	-	-
CLDPALIF_01989	1.27e-133	lepB	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
CLDPALIF_01990	3.49e-36	-	-	-	-	-	-	-	-
CLDPALIF_01991	3.85e-193	-	-	-	-	-	-	-	-
CLDPALIF_01992	2.54e-176	-	-	-	-	-	-	-	-
CLDPALIF_01993	1.65e-180	-	-	-	-	-	-	-	-
CLDPALIF_01994	1.33e-161	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
CLDPALIF_01995	1.25e-80	lexA	-	-	K	ko:K07979	-	ko00000,ko03000	Transcriptional regulator, GntR family
CLDPALIF_01996	2.86e-307	pepT	3.4.11.4	-	E	ko:K01258	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
CLDPALIF_01997	8.12e-196	yqfO	-	-	S	-	-	-	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CLDPALIF_01998	2.8e-159	trmK	2.1.1.217	-	S	ko:K06967	-	ko00000,ko01000,ko03016	SAM-dependent methyltransferase
CLDPALIF_01999	5.37e-106	-	3.6.1.55	-	F	ko:K03574	-	ko00000,ko01000,ko03400	NUDIX domain
CLDPALIF_02000	4.34e-166	-	-	-	S	-	-	-	Peptidase family M23
CLDPALIF_02001	9e-255	sigA	-	-	K	ko:K03086	-	ko00000,ko03021	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
CLDPALIF_02002	0.0	dnaG	-	-	L	ko:K02316	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
CLDPALIF_02003	0.0	glyS	6.1.1.14	-	J	ko:K01879	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Glycyl-tRNA synthetase beta subunit
CLDPALIF_02004	9.03e-229	glyQ	6.1.1.14	-	J	ko:K01878	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	glycyl-tRNA synthetase alpha subunit
CLDPALIF_02005	4.11e-173	recO	-	-	L	ko:K03584	ko03440,map03440	ko00000,ko00001,ko03400	Involved in DNA repair and RecF pathway recombination
CLDPALIF_02006	1.37e-216	era	-	-	S	ko:K03595	-	ko00000,ko03009,ko03029	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CLDPALIF_02007	3.58e-129	ybeY	-	-	S	ko:K07042	-	ko00000,ko03009	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CLDPALIF_02008	1.74e-224	phoH	-	-	T	ko:K06217	-	ko00000	phosphate starvation-inducible protein PhoH
CLDPALIF_02009	1.08e-92	yqeY	-	-	S	ko:K09117	-	ko00000	YqeY-like protein
CLDPALIF_02010	4.83e-30	rpsU	-	-	J	ko:K02970	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bS21 family
CLDPALIF_02011	6.94e-199	yqfL	2.7.11.33, 2.7.4.28	-	F	ko:K09773	-	ko00000,ko01000	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation
CLDPALIF_02012	1.34e-22	-	-	-	S	-	-	-	CRISPR-associated protein (Cas_Csn2)
CLDPALIF_02013	2.62e-95	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
CLDPALIF_02014	1.3e-221	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
CLDPALIF_02015	5.88e-181	metQ	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
CLDPALIF_02016	1.8e-34	-	-	-	-	-	-	-	-
CLDPALIF_02017	0.0	sufI	-	-	Q	-	-	-	Multicopper oxidase
CLDPALIF_02018	1.76e-193	-	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
CLDPALIF_02019	0.0	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLDPALIF_02020	8.29e-294	-	-	-	Q	-	-	-	Imidazolonepropionase and related amidohydrolases
CLDPALIF_02021	2.48e-313	-	-	-	S	ko:K12941	-	ko00000,ko01002	Peptidase dimerisation domain
CLDPALIF_02022	3.2e-176	-	-	-	S	-	-	-	Protein of unknown function (DUF3100)
CLDPALIF_02023	2.04e-60	-	-	-	S	-	-	-	An automated process has identified a potential problem with this gene model
CLDPALIF_02024	6.33e-221	ulaG	-	-	S	ko:K03476	ko00053,ko01100,ko01120,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Beta-lactamase superfamily domain
CLDPALIF_02025	4.93e-80	-	2.7.1.194	-	G	ko:K02821	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CLDPALIF_02026	6.58e-293	sgaT	-	-	S	ko:K03475	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
CLDPALIF_02027	4.82e-42	ulaB	2.7.1.194	-	G	ko:K02822	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
CLDPALIF_02028	2.85e-115	ulaD	4.1.1.85, 4.1.2.43	-	G	ko:K03078,ko:K08093	ko00030,ko00040,ko00053,ko00680,ko01100,ko01120,ko01200,ko01230,map00030,map00040,map00053,map00680,map01100,map01120,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Orotidine 5'-phosphate decarboxylase / HUMPS family
CLDPALIF_02029	1.78e-163	sga	5.1.3.22	-	G	ko:K03079	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Xylose isomerase-like TIM barrel
CLDPALIF_02030	1.52e-157	araD	5.1.3.4	-	G	ko:K03077	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
CLDPALIF_02031	5.85e-86	nt5e	3.1.3.18	-	L	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	ko00000,ko00001,ko01000	haloacid dehalogenase-like hydrolase
CLDPALIF_02032	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
CLDPALIF_02033	1.01e-22	-	-	-	L	-	-	-	Transposase
CLDPALIF_02034	7.51e-16	-	-	-	L	-	-	-	Transposase
CLDPALIF_02035	3.76e-18	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
CLDPALIF_02036	1.24e-75	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
CLDPALIF_02037	1.48e-134	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CLDPALIF_02038	1.95e-218	coaA	2.7.1.33	-	F	ko:K00867	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Pantothenic acid kinase
CLDPALIF_02039	1.88e-125	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase
CLDPALIF_02040	1.36e-96	yjcF	-	-	S	-	-	-	Acetyltransferase (GNAT) domain
CLDPALIF_02041	7.09e-184	aatB	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_02042	6.89e-136	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter
CLDPALIF_02043	3e-139	yecS_2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
CLDPALIF_02044	0.0	helD	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	DNA helicase
CLDPALIF_02045	1.47e-158	XK27_08875	-	-	O	-	-	-	PFAM peptidase M10A and M12B, matrixin and adamalysin
CLDPALIF_02046	7.53e-163	gpm2	-	-	G	-	-	-	Phosphoglycerate mutase family
CLDPALIF_02047	1.87e-308	-	-	-	S	-	-	-	response to antibiotic
CLDPALIF_02048	1.34e-162	-	-	-	-	-	-	-	-
CLDPALIF_02049	0.0	pacL3	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
CLDPALIF_02050	6.28e-87	-	2.7.1.191	-	G	ko:K02793	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system fructose IIA component
CLDPALIF_02051	1.42e-57	-	-	-	-	-	-	-	-
CLDPALIF_02052	4.65e-14	-	-	-	-	-	-	-	-
CLDPALIF_02053	7.81e-238	ansA	3.5.1.1	-	EJ	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110	ko00000,ko00001,ko01000	L-asparaginase, type I
CLDPALIF_02054	8.28e-176	-	-	-	K	ko:K03481	-	ko00000,ko03000	Helix-turn-helix domain, rpiR family
CLDPALIF_02055	0.0	malH	3.2.1.122	GH4	G	ko:K01232	ko00500,map00500	ko00000,ko00001,ko01000	Family 4 glycosyl hydrolase C-terminal domain
CLDPALIF_02061	1.72e-286	-	2.4.1.337	GT4	M	ko:K19002	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyl transferase 4-like domain
CLDPALIF_02062	3.68e-256	cpoA	2.4.1.208	GT4	M	ko:K13677,ko:K13678	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
CLDPALIF_02063	5.35e-224	mprF	-	-	S	ko:K07027	-	ko00000,ko02000	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CLDPALIF_02064	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
CLDPALIF_02065	1.3e-40	secG	-	-	U	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
CLDPALIF_02066	0.0	rnr	-	-	J	ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko03016,ko03019	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
CLDPALIF_02067	1.58e-101	smpB	-	-	J	ko:K03664	-	ko00000	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
CLDPALIF_02068	1.76e-234	yumC	1.18.1.2, 1.19.1.1	-	C	ko:K21567	-	ko00000,ko01000	Ferredoxin--NADP reductase
CLDPALIF_02069	6.9e-150	dedA	-	-	S	ko:K03975	-	ko00000	SNARE-like domain protein
CLDPALIF_02070	2.15e-137	-	-	-	S	-	-	-	Protein of unknown function (DUF1461)
CLDPALIF_02071	6.38e-184	nagD	3.1.3.41	-	G	ko:K01101	ko00627,ko01120,map00627,map01120	ko00000,ko00001,ko01000	Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
CLDPALIF_02072	4.25e-119	yutD	-	-	S	-	-	-	Protein of unknown function (DUF1027)
CLDPALIF_02073	0.0	sasH	3.1.3.5, 3.1.3.6, 3.1.4.16, 3.6.1.45	-	F	ko:K01081,ko:K01119,ko:K07004,ko:K08693,ko:K11751	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
CLDPALIF_02074	9.89e-74	-	-	-	-	-	-	-	-
CLDPALIF_02075	0.0	-	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
CLDPALIF_02076	1.23e-231	ccpA	-	-	K	ko:K02529	-	ko00000,ko03000	catabolite control protein A
CLDPALIF_02077	1.6e-272	pepQ	3.4.13.9	-	E	ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
CLDPALIF_02078	1.21e-243	cbh	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
CLDPALIF_02080	1.73e-227	-	-	-	S	-	-	-	Conserved hypothetical protein 698
CLDPALIF_02081	1.63e-109	dps	-	-	P	ko:K04047	-	ko00000,ko03036	Belongs to the Dps family
CLDPALIF_02082	3.87e-15	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FMN_bind
CLDPALIF_02083	2.33e-130	-	-	-	S	ko:K07025	-	ko00000	Haloacid dehalogenase-like hydrolase
CLDPALIF_02084	2.43e-95	-	-	-	S	ko:K11621	ko02020,map02020	ko00000,ko00001	Putative adhesin
CLDPALIF_02085	4.36e-93	-	-	-	K	ko:K03827	-	ko00000,ko01000	Acetyltransferase (GNAT) domain
CLDPALIF_02086	1.7e-299	mepA	-	-	V	ko:K18908	-	ko00000,ko00002,ko01504,ko02000	MATE efflux family protein
CLDPALIF_02093	1.39e-63	-	-	-	L	-	-	-	Phage integrase, N-terminal SAM-like domain
CLDPALIF_02094	7.74e-84	traI	5.99.1.2	-	L	ko:K03169	-	ko00000,ko01000,ko03032	DNA topoisomerase
CLDPALIF_02096	1.13e-201	-	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter transmembrane region
CLDPALIF_02097	2.91e-83	-	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter transmembrane region
CLDPALIF_02098	8.64e-85	yybA	-	-	K	-	-	-	Transcriptional regulator
CLDPALIF_02099	8e-108	XK27_03150	2.3.1.57	-	K	ko:K22441	-	ko00000,ko01000	Acetyltransferase (GNAT) domain
CLDPALIF_02100	5.59e-109	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
CLDPALIF_02101	2.88e-98	ykoJ	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
CLDPALIF_02102	2.37e-242	-	-	-	T	-	-	-	GHKL domain
CLDPALIF_02103	7.13e-168	-	-	-	T	-	-	-	Transcriptional regulatory protein, C terminal
CLDPALIF_02104	1.28e-228	pepR	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
CLDPALIF_02105	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
CLDPALIF_02106	7.13e-158	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
CLDPALIF_02107	6.45e-291	-	-	-	E	-	-	-	amino acid
CLDPALIF_02108	6.65e-179	puuD	-	-	S	ko:K07010	-	ko00000,ko01002	peptidase C26
CLDPALIF_02110	1.95e-221	-	-	-	V	-	-	-	HNH endonuclease
CLDPALIF_02111	6.36e-173	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLDPALIF_02112	5.27e-314	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
CLDPALIF_02113	2.58e-310	aapA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
CLDPALIF_02114	5.08e-149	sipS3	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
CLDPALIF_02115	0.0	-	-	-	S	-	-	-	Fibronectin type III domain
CLDPALIF_02116	7.03e-307	tyrS	6.1.1.1	-	J	ko:K01866	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CLDPALIF_02117	9.39e-71	-	-	-	-	-	-	-	-
CLDPALIF_02119	0.0	pepC2	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
CLDPALIF_02120	1.77e-157	ypgQ	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLDPALIF_02121	0.0	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
CLDPALIF_02122	0.0	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
CLDPALIF_02123	4.39e-267	guaB	1.1.1.205	-	F	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
CLDPALIF_02124	1.34e-191	oppB	-	-	P	ko:K15581	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLDPALIF_02125	1.3e-238	oppC	-	-	EP	ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLDPALIF_02126	6.08e-253	oppD	-	-	P	ko:K02031,ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
CLDPALIF_02127	6.54e-222	oppF	-	-	P	ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
CLDPALIF_02128	0.0	pepE	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
CLDPALIF_02129	6.87e-93	hsp	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
CLDPALIF_02130	5.69e-100	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
CLDPALIF_02131	1.43e-144	-	-	-	-	-	-	-	-
CLDPALIF_02133	1.66e-143	-	-	-	E	-	-	-	Belongs to the SOS response-associated peptidase family
CLDPALIF_02134	4.07e-245	trpS	6.1.1.2	-	J	ko:K01867	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
CLDPALIF_02135	4.29e-116	comEB	3.5.4.12	-	F	ko:K01493	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko02044	MafB19-like deaminase
CLDPALIF_02136	4.57e-135	-	-	-	S	ko:K06872	-	ko00000	TPM domain
CLDPALIF_02137	1.28e-172	mgtA	3.6.3.2	-	P	ko:K01531	-	ko00000,ko01000	COG0474 Cation transport ATPase
CLDPALIF_02138	0.0	mgtA	3.6.3.2	-	P	ko:K01531	-	ko00000,ko01000	COG0474 Cation transport ATPase
CLDPALIF_02139	0.0	metG	6.1.1.10	-	J	ko:K01874	ko00450,ko00970,map00450,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLDPALIF_02140	2.72e-189	tatD	-	-	L	ko:K03424	-	ko00000,ko01000	hydrolase, TatD family
CLDPALIF_02141	5.17e-129	rnmV	3.1.26.8	-	J	ko:K05985	-	ko00000,ko01000	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CLDPALIF_02142	2.56e-193	ksgA	2.1.1.182	-	J	ko:K02528	-	ko00000,ko01000,ko03009	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
CLDPALIF_02143	9.99e-53	veg	-	-	S	-	-	-	Biofilm formation stimulator VEG
CLDPALIF_02144	9.72e-189	purR	-	-	F	ko:K09685	-	ko00000,ko03000	pur operon repressor
CLDPALIF_02145	3.12e-308	glmU	2.3.1.157, 2.7.7.23	-	M	ko:K04042	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CLDPALIF_02146	5.52e-113	-	-	-	-	-	-	-	-
CLDPALIF_02147	0.0	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_02148	5.4e-226	prs	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CLDPALIF_02149	1.37e-219	-	-	-	GK	-	-	-	ROK family
CLDPALIF_02150	2.53e-56	-	-	-	-	-	-	-	-
CLDPALIF_02151	0.0	-	-	-	S	ko:K06885	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLDPALIF_02152	1.75e-89	-	-	-	S	-	-	-	Domain of unknown function (DUF1934)
CLDPALIF_02153	2.38e-88	rpoE	-	-	K	ko:K03048	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko03021,ko03400	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
CLDPALIF_02154	0.0	pyrG	6.3.4.2	-	F	ko:K01937	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
CLDPALIF_02155	1.89e-312	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CLDPALIF_02156	7.28e-97	-	-	-	K	-	-	-	acetyltransferase
CLDPALIF_02157	0.0	pepDA	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLDPALIF_02158	2.73e-201	msmR	-	-	K	-	-	-	AraC-like ligand binding domain
CLDPALIF_02159	1.08e-289	pbuX	-	-	F	ko:K03458,ko:K16169	-	ko00000,ko02000	xanthine permease
CLDPALIF_02160	7.92e-135	xpt	2.4.2.22	-	F	ko:K03816	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
CLDPALIF_02161	9.75e-20	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
CLDPALIF_02162	1.15e-201	plcR	-	-	K	ko:K20480	ko02024,map02024	ko00000,ko00001,ko03000	Helix-turn-helix
CLDPALIF_02163	2.52e-194	-	-	-	I	-	-	-	alpha/beta hydrolase fold
CLDPALIF_02164	3.2e-143	-	-	-	S	-	-	-	SNARE associated Golgi protein
CLDPALIF_02165	1.23e-129	yjcK	2.3.1.128	-	J	ko:K03790	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
CLDPALIF_02166	0.0	serS	6.1.1.11	-	J	ko:K01875	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CLDPALIF_02167	4.98e-37	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLDPALIF_02168	1.44e-53	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLDPALIF_02169	9.06e-184	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLDPALIF_02170	1.38e-165	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLDPALIF_02171	0.0	eriC	-	-	P	ko:K03281	-	ko00000	chloride
CLDPALIF_02172	1.98e-41	-	-	-	E	-	-	-	Zn peptidase
CLDPALIF_02173	8.29e-76	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLDPALIF_02174	2.35e-58	-	-	-	-	-	-	-	-
CLDPALIF_02175	4.54e-135	-	-	-	S	-	-	-	Bacteriocin helveticin-J
CLDPALIF_02176	1.14e-154	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_02177	6.57e-175	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_02178	3.91e-269	-	-	-	-	-	-	-	-
CLDPALIF_02179	6.46e-27	-	-	-	-	-	-	-	-
CLDPALIF_02182	1.35e-208	-	-	-	S	ko:K06926	-	ko00000	AAA domain, putative AbiEii toxin, Type IV TA system
CLDPALIF_02183	0.0	hsdR	3.1.21.3	-	L	ko:K01153	-	ko00000,ko01000,ko02048	DEAD/DEAH box helicase
CLDPALIF_02184	0.0	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_02186	2.15e-127	-	-	-	L	-	-	-	Helix-turn-helix domain
CLDPALIF_02187	4.42e-269	mvaS	2.3.3.10	-	I	ko:K01641	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Hydroxymethylglutaryl-CoA synthase
CLDPALIF_02188	1.22e-272	atoB	1.1.1.88, 2.3.1.9	-	I	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the thiolase family
CLDPALIF_02189	3.22e-215	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
CLDPALIF_02190	3.44e-209	rbn	-	-	S	ko:K07058	-	ko00000	Belongs to the UPF0761 family
CLDPALIF_02191	9.98e-211	map	3.4.11.18	-	E	ko:K01265	-	ko00000,ko01000,ko01002	Methionine Aminopeptidase
CLDPALIF_02192	5.14e-105	ykuP	-	-	C	ko:K03839	-	ko00000	Flavodoxin
CLDPALIF_02193	7.46e-113	gtcA1	-	-	S	-	-	-	Teichoic acid glycosylation protein
CLDPALIF_02194	1.27e-311	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
CLDPALIF_02195	1.64e-59	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
CLDPALIF_02196	0.0	sufB	-	-	O	ko:K07033,ko:K09014	-	ko00000	assembly protein SufB
CLDPALIF_02197	6.98e-78	nifU	-	-	C	ko:K04488	-	ko00000	SUF system FeS assembly protein, NifU family
CLDPALIF_02198	9.78e-225	sufS	2.8.1.7, 4.4.1.16	-	E	ko:K11717	ko00450,ko01100,map00450,map01100	ko00000,ko00001,ko01000	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLDPALIF_02199	6.22e-232	sufD	-	-	O	ko:K07033,ko:K09015	-	ko00000	FeS assembly protein SufD
CLDPALIF_02200	4.43e-179	sufC	-	-	O	ko:K09013	-	ko00000,ko02000	FeS assembly ATPase SufC
CLDPALIF_02201	1.18e-95	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	domain protein
CLDPALIF_02203	5.89e-316	ade	3.5.4.2	-	F	ko:K01486	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000	Adenine deaminase C-terminal domain
CLDPALIF_02204	1.22e-195	-	-	-	P	ko:K02055	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLDPALIF_02205	4.48e-174	potA11	3.6.3.30	-	P	ko:K02010,ko:K02052	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
CLDPALIF_02206	3.9e-135	potC3	-	-	E	ko:K02053	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
CLDPALIF_02207	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
CLDPALIF_02208	0.0	kup	-	-	P	ko:K03549	-	ko00000,ko02000	Transport of potassium into the cell
CLDPALIF_02209	6.55e-97	-	-	-	-	-	-	-	-
CLDPALIF_02210	3.75e-48	-	-	-	S	-	-	-	PFAM Archaeal ATPase
CLDPALIF_02212	4.53e-76	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
CLDPALIF_02213	2.09e-59	-	-	-	-	-	-	-	-
CLDPALIF_02214	5.32e-285	-	-	-	I	-	-	-	Protein of unknown function (DUF2974)
CLDPALIF_02215	4.38e-150	-	-	-	S	ko:K07507	-	ko00000,ko02000	MgtC family
CLDPALIF_02218	7.2e-84	-	-	-	-	-	-	-	-
CLDPALIF_02219	7.06e-110	-	-	-	-	-	-	-	-
CLDPALIF_02220	1.36e-171	-	-	-	D	-	-	-	Ftsk spoiiie family protein
CLDPALIF_02221	1.74e-185	-	-	-	S	-	-	-	Replication initiation factor
CLDPALIF_02222	1.33e-72	-	-	-	-	-	-	-	-
CLDPALIF_02223	4.04e-36	-	-	-	-	-	-	-	-
CLDPALIF_02224	5.85e-81	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLDPALIF_02226	1.21e-40	-	-	-	-	-	-	-	-
CLDPALIF_02227	2.56e-55	-	-	-	S	-	-	-	Protein of unknown function (DUF2922)
CLDPALIF_02228	1.47e-140	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_02229	3.41e-57	-	-	-	-	-	-	-	-
CLDPALIF_02230	2.96e-100	-	-	-	K	-	-	-	DNA-templated transcription, initiation
CLDPALIF_02232	1.8e-70	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
CLDPALIF_02233	3.07e-136	-	-	-	S	-	-	-	SLAP domain
CLDPALIF_02234	5.12e-242	asnA	6.3.1.1	-	F	ko:K01914	ko00250,ko00460,ko01100,ko01110,ko01230,map00250,map00460,map01100,map01110,map01230	ko00000,ko00001,ko01000	aspartate--ammonia ligase
CLDPALIF_02235	1.84e-263	-	4.2.1.126	-	S	ko:K07106,ko:K09963	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Bacterial protein of unknown function (DUF871)
CLDPALIF_02238	1.35e-238	guaC	1.7.1.7	-	F	ko:K00364	ko00230,map00230	ko00000,ko00001,ko01000	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
CLDPALIF_02239	0.0	purA	6.3.4.4	-	F	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CLDPALIF_02240	7.13e-313	purB	4.3.2.2	-	F	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CLDPALIF_02241	7.32e-157	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
CLDPALIF_02242	6.74e-269	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
CLDPALIF_02243	5.83e-67	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
CLDPALIF_02244	1.74e-113	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
CLDPALIF_02245	0.0	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
CLDPALIF_02246	8.59e-133	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLDPALIF_02247	0.0	yhdP	-	-	S	-	-	-	Transporter associated domain
CLDPALIF_02248	2.14e-154	-	-	-	C	-	-	-	nitroreductase
CLDPALIF_02249	1.76e-52	-	-	-	-	-	-	-	-
CLDPALIF_02250	1.96e-113	ptbA	2.7.1.208	-	G	ko:K02755,ko:K02777,ko:K20107,ko:K20108	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	ko00000,ko00001,ko00002,ko01000,ko02000	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
CLDPALIF_02251	1.52e-103	-	-	-	-	-	-	-	-
CLDPALIF_02252	6.89e-190	glvR	-	-	K	ko:K03481	-	ko00000,ko03000	Helix-turn-helix domain, rpiR family
CLDPALIF_02253	0.0	glvC	2.7.1.208	-	G	ko:K02749,ko:K02750	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
CLDPALIF_02254	7.44e-189	-	-	-	S	-	-	-	hydrolase
CLDPALIF_02255	1.85e-205	-	-	-	S	-	-	-	Phospholipase, patatin family
CLDPALIF_02256	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
CLDPALIF_02257	4.44e-174	-	-	-	K	ko:K22103	-	ko00000,ko03000	DeoR C terminal sensor domain
CLDPALIF_02258	2.9e-79	-	-	-	S	-	-	-	Enterocin A Immunity
CLDPALIF_02259	3.18e-198	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
CLDPALIF_02260	6.63e-174	gntR	-	-	K	-	-	-	UbiC transcription regulator-associated domain protein
CLDPALIF_02261	1.01e-222	rihC	3.2.2.1	-	F	ko:K01239,ko:K01250,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	Nucleoside
CLDPALIF_02262	0.0	kup	-	-	P	ko:K03549	-	ko00000,ko02000	Transport of potassium into the cell
CLDPALIF_02263	1.82e-161	rpiA	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CLDPALIF_02264	8.52e-215	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLDPALIF_02265	7.29e-209	-	-	-	C	-	-	-	Domain of unknown function (DUF4931)
CLDPALIF_02266	2.2e-308	srrA1	-	-	G	ko:K02027,ko:K17244	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
CLDPALIF_02267	3.52e-296	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2325)
CLDPALIF_02268	2.09e-110	-	-	-	-	-	-	-	-
CLDPALIF_02269	1.04e-211	-	-	-	S	-	-	-	Protein of unknown function (DUF2974)
CLDPALIF_02270	3.65e-141	glnP	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLDPALIF_02271	4.29e-122	glnM	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLDPALIF_02272	3.39e-187	glnH	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
CLDPALIF_02273	2.8e-173	glnQ	-	-	E	ko:K10041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_02274	2.72e-60	udk	2.7.1.48	-	F	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Zeta toxin
CLDPALIF_02275	5.43e-50	udk	2.7.1.48	-	F	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Zeta toxin
CLDPALIF_02276	8.41e-314	-	-	-	G	-	-	-	MFS/sugar transport protein
CLDPALIF_02277	1.72e-129	ykoE	-	-	S	ko:K16925	-	ko00000,ko00002,ko02000	ABC-type cobalt transport system, permease component
CLDPALIF_02278	0.0	XK27_09605	-	-	V	ko:K18892	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter transmembrane region
CLDPALIF_02279	0.0	XK27_09600	-	-	V	ko:K06147,ko:K18891	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_02280	2.53e-106	-	-	-	K	-	-	-	Transcriptional regulator, MarR family
CLDPALIF_02281	2.05e-188	peb1A	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
CLDPALIF_02282	1.07e-165	-	-	-	F	-	-	-	glutamine amidotransferase
CLDPALIF_02283	3.41e-312	steT	-	-	E	ko:K03294	-	ko00000	amino acid
CLDPALIF_02284	3.97e-33	steT	-	-	E	ko:K03294	-	ko00000	amino acid
CLDPALIF_02285	1.11e-256	steT	-	-	E	ko:K03294	-	ko00000	amino acid
CLDPALIF_02286	1.53e-176	-	-	-	-	-	-	-	-
CLDPALIF_02287	2.2e-251	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
CLDPALIF_02288	4.78e-261	-	-	-	S	-	-	-	Domain of unknown function (DUF389)
CLDPALIF_02289	1.53e-122	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
CLDPALIF_02290	6.49e-137	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
CLDPALIF_02293	8.95e-70	-	-	-	K	-	-	-	LytTr DNA-binding domain
CLDPALIF_02294	9.29e-51	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
CLDPALIF_02295	1.08e-217	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
CLDPALIF_02296	2.25e-30	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	domain protein
CLDPALIF_02297	1.24e-169	cobB	-	-	K	ko:K12410	-	ko00000,ko01000	SIR2 family
CLDPALIF_02298	1.25e-119	adaB	2.1.1.63	-	L	ko:K00567,ko:K10778,ko:K13531	-	ko00000,ko01000,ko03000,ko03400	6-O-methylguanine DNA methyltransferase, DNA binding domain
CLDPALIF_02299	1.14e-164	terC	-	-	P	-	-	-	Integral membrane protein TerC family
CLDPALIF_02300	7.63e-85	yeaO	-	-	S	-	-	-	Protein of unknown function, DUF488
CLDPALIF_02301	1.41e-155	yxlJ	3.2.2.21	-	L	ko:K03652	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Belongs to the DNA glycosylase MPG family
CLDPALIF_02302	0.0	XK27_05795	-	-	P	ko:K17073,ko:K17074	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
CLDPALIF_02303	2.89e-173	glnQ	-	-	E	ko:K17076	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_02304	1.4e-191	yhaH	-	-	S	-	-	-	Protein of unknown function (DUF805)
CLDPALIF_02305	1.67e-102	-	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
CLDPALIF_02306	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
CLDPALIF_02312	1.14e-130	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC P60 family protein
CLDPALIF_02314	2.25e-76	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
CLDPALIF_02315	4.35e-163	-	-	-	S	-	-	-	Alpha/beta hydrolase family
CLDPALIF_02316	2.62e-199	epsV	-	-	S	-	-	-	glycosyl transferase family 2
CLDPALIF_02317	9.18e-187	-	-	-	S	-	-	-	Protein of unknown function (DUF1002)
CLDPALIF_02318	5.07e-190	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CLDPALIF_02319	1.24e-232	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
CLDPALIF_02320	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLDPALIF_02321	2.29e-112	-	-	-	-	-	-	-	-
CLDPALIF_02322	5.34e-77	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
CLDPALIF_02323	4.1e-34	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CLDPALIF_02324	7.44e-129	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
CLDPALIF_02325	6.16e-158	aapA	-	-	M	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CLDPALIF_02326	5.48e-103	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
CLDPALIF_02327	1.43e-95	int3	-	-	L	-	-	-	Belongs to the 'phage' integrase family
CLDPALIF_02330	2.15e-09	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLDPALIF_02331	2.69e-25	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
CLDPALIF_02332	1.23e-101	-	-	-	S	-	-	-	Phage antirepressor protein KilAC domain
CLDPALIF_02333	5.99e-61	-	-	-	-	-	-	-	-
CLDPALIF_02339	8.93e-33	-	-	-	S	-	-	-	HNH endonuclease
CLDPALIF_02340	9.54e-88	-	-	-	S	-	-	-	AAA domain
CLDPALIF_02341	0.0	pulA	3.2.1.41	CBM48,GH13	G	ko:K01200	ko00500,ko01100,ko01110,map00500,map01100,map01110	ko00000,ko00001,ko01000	belongs to the glycosyl hydrolase 13 family
CLDPALIF_02342	4.14e-113	-	-	-	K	ko:K03484	-	ko00000,ko03000	Periplasmic binding protein domain
CLDPALIF_02343	8.83e-242	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
CLDPALIF_02344	0.0	mutS1	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
CLDPALIF_02345	1.24e-258	xerS	-	-	L	ko:K03733	-	ko00000,ko03036	Belongs to the 'phage' integrase family
CLDPALIF_02346	1.5e-90	-	-	-	-	-	-	-	-
CLDPALIF_02347	4.36e-142	XK27_00160	-	-	S	-	-	-	Domain of unknown function (DUF5052)
CLDPALIF_02348	3.35e-269	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
CLDPALIF_02349	9.5e-281	-	-	-	P	ko:K06148	-	ko00000,ko02000	ABC transporter
CLDPALIF_02350	2.46e-48	-	-	-	-	-	-	-	-
CLDPALIF_02352	1.46e-161	-	-	-	S	-	-	-	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
CLDPALIF_02353	3.78e-112	-	-	-	K	-	-	-	GNAT family
CLDPALIF_02354	5.25e-258	XK27_00915	-	-	C	-	-	-	Luciferase-like monooxygenase
CLDPALIF_02355	4.45e-156	rbtT	-	-	P	ko:K13021	-	ko00000,ko02000	Major Facilitator Superfamily
CLDPALIF_02356	9.14e-77	-	-	-	EGP	-	-	-	Major Facilitator
CLDPALIF_02357	4.19e-92	ytsP	1.8.4.14	-	T	ko:K08968	ko00270,map00270	ko00000,ko00001,ko01000	GAF domain-containing protein
CLDPALIF_02360	1.45e-183	XK27_08125	-	-	S	ko:K09861	-	ko00000	Belongs to the UPF0246 family
CLDPALIF_02361	9.79e-181	-	-	-	S	ko:K06889	-	ko00000	Alpha/beta hydrolase family
CLDPALIF_02362	2.75e-143	-	-	-	G	-	-	-	phosphoglycerate mutase
CLDPALIF_02363	1.45e-119	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
CLDPALIF_02364	1.05e-233	yxeA	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
CLDPALIF_02365	2.12e-132	lolD	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
CLDPALIF_02366	0.0	pepD4	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
CLDPALIF_02368	6.41e-27	-	-	-	L	-	-	-	Addiction module antitoxin, RelB DinJ family
CLDPALIF_02369	1.17e-18	-	-	-	-	-	-	-	-
CLDPALIF_02371	0.0	-	-	-	-	-	-	-	-
CLDPALIF_02372	0.0	-	-	-	U	-	-	-	Psort location Cytoplasmic, score
CLDPALIF_02373	1.67e-279	-	-	-	-	-	-	-	-
CLDPALIF_02383	0.0	tagE3	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
CLDPALIF_02384	8.79e-162	-	-	-	S	-	-	-	Fic/DOC family
CLDPALIF_02388	0.0	-	-	-	-	-	-	-	-
CLDPALIF_02392	5.74e-184	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	sortase family
CLDPALIF_02399	6.63e-259	-	-	-	-	-	-	-	-
CLDPALIF_02402	0.0	-	-	-	M	-	-	-	Psort location Cellwall, score
CLDPALIF_02406	6.05e-291	-	-	-	-	ko:K18640	-	ko00000,ko04812	-