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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	KEGG_ko	KEGG_Pathway	BRITE	Description
JAPHLIII_00001	0.0	dnaA	-	-	L	ko:K02313	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko03032,ko03036	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JAPHLIII_00002	8.19e-267	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
JAPHLIII_00003	3.82e-51	yaaA	-	-	S	ko:K14761	-	ko00000,ko03009	S4 domain protein YaaA
JAPHLIII_00004	7.24e-263	recF	-	-	L	ko:K03629	ko03440,map03440	ko00000,ko00001,ko03400	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JAPHLIII_00005	0.0	gyrB	5.99.1.3	-	L	ko:K02470	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JAPHLIII_00006	0.0	gyrA	5.99.1.3	-	L	ko:K02469	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JAPHLIII_00007	5.95e-65	rpsF	-	-	J	ko:K02990	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Binds together with S18 to 16S ribosomal RNA
JAPHLIII_00008	1.68e-108	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
JAPHLIII_00009	2.69e-47	rpsR	-	-	J	ko:K02963	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JAPHLIII_00010	0.0	yybT	-	-	T	-	-	-	signaling protein consisting of a modified GGDEF domain and a DHH domain
JAPHLIII_00011	3.44e-95	rplI	-	-	J	ko:K02939	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
JAPHLIII_00012	8.77e-317	dnaB	3.6.4.12	-	L	ko:K02314	ko03030,ko04112,map03030,map04112	ko00000,ko00001,ko01000,ko03032	Participates in initiation and elongation during chromosome replication
JAPHLIII_00013	4.96e-289	yttB	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_00014	9e-184	proB	2.7.2.11	-	F	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JAPHLIII_00015	2.67e-291	proA	1.2.1.41	-	E	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JAPHLIII_00017	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
JAPHLIII_00019	0.0	glgB	2.4.1.18	CBM48,GH13	G	ko:K00700	ko00500,ko01100,ko01110,map00500,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JAPHLIII_00020	5.46e-281	glgC	2.7.7.27	-	H	ko:K00975	ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026	ko00000,ko00001,ko00002,ko01000	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JAPHLIII_00021	3.49e-269	glgD	2.7.7.27	-	G	ko:K00975	ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026	ko00000,ko00001,ko00002,ko01000	Nucleotidyl transferase
JAPHLIII_00022	0.0	glgA	2.4.1.21	GT5	F	ko:K00703	ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026	ko00000,ko00001,ko00002,ko01000,ko01003	Synthesizes alpha-1,4-glucan chains using ADP-glucose
JAPHLIII_00023	0.0	glgP	2.4.1.1	GT35	G	ko:K00688	ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931	ko00000,ko00001,ko01000	Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
JAPHLIII_00024	0.0	malZ	3.2.1.20, 3.2.1.41	CBM48,GH13,GH31	G	ko:K01187,ko:K01200	ko00052,ko00500,ko01100,ko01110,map00052,map00500,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 13 family
JAPHLIII_00026	2.81e-182	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
JAPHLIII_00027	4.47e-154	pgmB	5.4.2.6	-	S	ko:K01838	ko00500,map00500	ko00000,ko00001,ko01000	beta-phosphoglucomutase
JAPHLIII_00028	0.0	trePP	2.4.1.216, 2.4.1.8	GH65	G	ko:K00691,ko:K03731	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	Glycosyl hydrolase family 65 central catalytic domain
JAPHLIII_00029	3.21e-104	-	-	-	S	-	-	-	Pyridoxamine 5'-phosphate oxidase
JAPHLIII_00030	4.37e-43	cspL	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock protein domain
JAPHLIII_00031	2.54e-50	-	-	-	-	-	-	-	-
JAPHLIII_00033	2.22e-169	yycF	-	-	K	ko:K07668	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator
JAPHLIII_00034	0.0	vicK	2.7.13.3	-	T	ko:K07652	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
JAPHLIII_00035	5.88e-312	yycH	-	-	S	-	-	-	YycH protein
JAPHLIII_00036	1.44e-194	yycI	-	-	S	-	-	-	YycH protein
JAPHLIII_00037	1.71e-200	vicX	3.1.26.11	-	S	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	domain protein
JAPHLIII_00038	1.5e-253	htrA	3.4.21.107	-	O	ko:K04771	ko01503,ko02020,map01503,map02020	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	serine protease
JAPHLIII_00039	6.08e-107	rlmH	2.1.1.177	-	J	ko:K00783	-	ko00000,ko01000,ko03009	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JAPHLIII_00040	3.46e-124	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_00041	0.0	-	-	-	C	-	-	-	Belongs to the aldehyde dehydrogenase family
JAPHLIII_00042	5.97e-157	ung2	-	-	L	-	-	-	Uracil-DNA glycosylase
JAPHLIII_00043	1.13e-119	pnb	-	-	C	-	-	-	nitroreductase
JAPHLIII_00044	4.95e-86	-	4.1.2.50, 4.2.3.12	-	H	ko:K01737	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000,ko03016	6-pyruvoyl tetrahydropterin synthase
JAPHLIII_00045	1.57e-150	-	-	-	S	-	-	-	Elongation factor G-binding protein, N-terminal
JAPHLIII_00046	0.0	-	-	-	C	-	-	-	FMN_bind
JAPHLIII_00047	0.0	-	-	-	P	ko:K03319	-	ko00000	Sodium:sulfate symporter transmembrane region
JAPHLIII_00048	1.46e-204	-	-	-	K	-	-	-	LysR family
JAPHLIII_00049	1.44e-94	-	-	-	C	-	-	-	FMN binding
JAPHLIII_00050	4.48e-98	arsC	1.20.4.1	-	T	ko:K03741	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JAPHLIII_00051	4.06e-211	-	-	-	S	-	-	-	KR domain
JAPHLIII_00052	5.74e-204	adc	4.1.1.4	-	Q	ko:K01574	ko00072,ko00640,ko01100,map00072,map00640,map01100	ko00000,ko00001,ko00002,ko01000	Acetoacetate decarboxylase (ADC)
JAPHLIII_00053	5.07e-157	ydgI	-	-	C	-	-	-	Nitroreductase family
JAPHLIII_00054	0.0	-	-	-	QT	-	-	-	PucR C-terminal helix-turn-helix domain
JAPHLIII_00055	3.83e-155	pgmB	5.4.2.6	-	S	ko:K01838	ko00500,map00500	ko00000,ko00001,ko01000	beta-phosphoglucomutase
JAPHLIII_00056	2.28e-250	pva1	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
JAPHLIII_00057	0.0	-	-	-	S	-	-	-	Putative threonine/serine exporter
JAPHLIII_00058	6.86e-175	ptp1	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
JAPHLIII_00059	0.0	hpaH	1.14.14.8, 1.14.14.9	-	Q	ko:K00483,ko:K16901	ko00350,ko00380,ko01120,ko01220,map00350,map00380,map01120,map01220	ko00000,ko00001,ko01000	4-hydroxyphenylacetate
JAPHLIII_00060	1.65e-106	-	-	-	S	-	-	-	ASCH
JAPHLIII_00061	1.25e-164	-	-	-	F	-	-	-	glutamine amidotransferase
JAPHLIII_00062	1.88e-216	-	-	-	K	-	-	-	WYL domain
JAPHLIII_00063	6.65e-152	azoR	-	-	C	ko:K01118	-	ko00000,ko01000	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JAPHLIII_00064	0.0	fusA1	-	-	J	-	-	-	elongation factor G
JAPHLIII_00065	2.96e-38	-	-	-	S	-	-	-	Protein of unknown function
JAPHLIII_00066	2.44e-105	-	-	-	S	-	-	-	Protein of unknown function
JAPHLIII_00067	1.56e-197	-	-	-	EG	-	-	-	EamA-like transporter family
JAPHLIII_00068	7.65e-121	yfbM	-	-	K	-	-	-	FR47-like protein
JAPHLIII_00069	5.69e-162	-	-	-	S	-	-	-	DJ-1/PfpI family
JAPHLIII_00070	1.77e-236	-	1.1.1.1	-	C	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	nadph quinone reductase
JAPHLIII_00071	1.92e-67	-	-	-	K	-	-	-	helix_turn_helix, Arsenical Resistance Operon Repressor
JAPHLIII_00072	5.98e-302	mepA	-	-	V	ko:K18908	-	ko00000,ko00002,ko01504,ko02000	MATE efflux family protein
JAPHLIII_00073	2.58e-214	pepI	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
JAPHLIII_00074	9.06e-180	XK27_08125	-	-	S	ko:K09861	-	ko00000	Belongs to the UPF0246 family
JAPHLIII_00075	2.38e-99	-	-	-	-	-	-	-	-
JAPHLIII_00076	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding proteins, family 5 Middle
JAPHLIII_00077	3.99e-179	-	-	-	-	-	-	-	-
JAPHLIII_00078	6.76e-05	-	-	-	-	-	-	-	-
JAPHLIII_00079	7.41e-182	ant1	2.7.7.47	-	H	ko:K00984	-	ko00000,ko01000,ko01504	Mediates bacterial resistance to the antibiotics streptomycin and spectomycin
JAPHLIII_00080	1.67e-54	-	-	-	-	-	-	-	-
JAPHLIII_00081	7.11e-165	-	-	-	P	ko:K02006	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_00082	9.79e-192	-	-	-	P	ko:K02008	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Cobalt transport protein
JAPHLIII_00083	1.84e-235	cbiM	-	-	P	ko:K02007	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	PDGLE domain
JAPHLIII_00084	1.39e-156	rcfB	-	-	K	-	-	-	Crp-like helix-turn-helix domain
JAPHLIII_00085	7.9e-306	larA	5.1.2.1	-	S	ko:K22373	ko00620,map00620	ko00000,ko00001,ko01000	Domain of unknown function (DUF2088)
JAPHLIII_00086	3.76e-162	larB	-	-	S	ko:K06898	-	ko00000	AIR carboxylase
JAPHLIII_00087	2.9e-178	larC	4.99.1.12	-	S	ko:K09121	-	ko00000,ko01000	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
JAPHLIII_00088	1.75e-98	larC2	4.99.1.12	-	S	ko:K09121	-	ko00000,ko01000	Protein of unknown function DUF111
JAPHLIII_00089	1.19e-170	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
JAPHLIII_00090	6.38e-194	larE	-	-	S	ko:K06864	-	ko00000	NAD synthase
JAPHLIII_00091	2.38e-225	-	-	-	C	-	-	-	Zinc-binding dehydrogenase
JAPHLIII_00092	3.09e-174	thiM	2.7.1.50	-	H	ko:K00878	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
JAPHLIII_00093	8.33e-189	thiD	2.7.1.49, 2.7.4.7	-	H	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Phosphomethylpyrimidine kinase
JAPHLIII_00094	2.68e-143	thiE	2.5.1.3	-	H	ko:K00788	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
JAPHLIII_00095	2.5e-262	thiP	-	-	U	-	-	-	Belongs to the purine-cytosine permease (2.A.39) family
JAPHLIII_00096	7.45e-178	puuD	-	-	S	ko:K07010	-	ko00000,ko01002	peptidase C26
JAPHLIII_00097	0.0	-	-	-	L	-	-	-	HIRAN domain
JAPHLIII_00098	3.55e-109	-	3.6.1.55	-	F	ko:K03574	-	ko00000,ko01000,ko03400	NUDIX domain
JAPHLIII_00099	0.0	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
JAPHLIII_00100	0.0	-	-	-	L	ko:K07487	-	ko00000	Transposase
JAPHLIII_00101	2.26e-153	-	-	-	-	-	-	-	-
JAPHLIII_00102	1.2e-190	-	-	-	I	-	-	-	Alpha/beta hydrolase family
JAPHLIII_00103	0.0	cas9	-	-	L	ko:K09952	-	ko00000,ko01000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
JAPHLIII_00104	5.22e-201	cas1	-	-	L	ko:K15342	-	ko00000,ko02048,ko03400	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
JAPHLIII_00105	1.98e-64	cas2	-	-	L	ko:K09951	-	ko00000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
JAPHLIII_00106	3.47e-127	-	-	-	S	-	-	-	CRISPR-associated protein (Cas_Csn2)
JAPHLIII_00107	0.0	pacL1	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
JAPHLIII_00108	3.84e-183	-	-	-	F	-	-	-	Phosphorylase superfamily
JAPHLIII_00109	2.92e-38	pspC	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	PspC domain
JAPHLIII_00110	2.01e-141	azo1	1.5.1.36, 1.7.1.6	-	S	ko:K03206,ko:K19784,ko:K22393	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	NADPH-dependent FMN reductase
JAPHLIII_00111	1.27e-98	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_00112	3.99e-96	hsp1	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
JAPHLIII_00113	2.21e-70	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
JAPHLIII_00114	5.38e-290	-	-	-	EGP	ko:K08161	-	ko00000,ko02000	Transporter, major facilitator family protein
JAPHLIII_00115	3.98e-68	-	-	-	K	-	-	-	helix_turn_helix, Arsenical Resistance Operon Repressor
JAPHLIII_00116	2.79e-274	yycB	-	-	P	ko:K03449	-	ko00000,ko02000	Transporter, major facilitator family protein
JAPHLIII_00118	7.24e-203	morA	-	-	S	-	-	-	reductase
JAPHLIII_00119	8.21e-213	-	1.1.1.65	-	C	ko:K05275	ko00750,ko01100,ko01120,map00750,map01100,map01120	ko00000,ko00001,ko01000	Aldo keto reductase
JAPHLIII_00120	7.84e-106	-	-	-	F	-	-	-	Nucleoside 2-deoxyribosyltransferase like
JAPHLIII_00121	0.0	l1n	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
JAPHLIII_00122	4.03e-132	-	-	-	-	-	-	-	-
JAPHLIII_00123	0.0	-	-	-	-	-	-	-	-
JAPHLIII_00124	5.96e-264	-	-	-	C	-	-	-	Oxidoreductase
JAPHLIII_00125	6.34e-191	cbiQ	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	cobalt transport
JAPHLIII_00126	0.0	ykoD	-	-	P	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_00127	2.57e-128	-	-	-	S	ko:K16924	-	ko00000,ko00002,ko02000	UPF0397 protein
JAPHLIII_00128	4.37e-167	-	-	-	K	ko:K03492	-	ko00000,ko03000	UbiC transcription regulator-associated domain protein
JAPHLIII_00129	4.14e-72	-	-	-	K	-	-	-	Transcriptional regulator PadR-like family
JAPHLIII_00130	3.14e-182	-	-	-	-	-	-	-	-
JAPHLIII_00131	7.76e-192	-	-	-	-	-	-	-	-
JAPHLIII_00132	3.37e-115	-	-	-	-	-	-	-	-
JAPHLIII_00133	7.14e-185	dhrS4	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Oxidoreductase, short chain dehydrogenase reductase family protein
JAPHLIII_00134	4.24e-218	ybhF_1	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_00135	0.0	-	-	-	M	ko:K01992	-	ko00000,ko00002,ko02000	Exporter of polyketide antibiotics
JAPHLIII_00136	1.09e-148	-	-	-	K	ko:K09017	-	ko00000,ko03000	Transcriptional regulator
JAPHLIII_00137	0.0	etfA	1.3.1.108	-	C	ko:K03522,ko:K22432	-	ko00000,ko01000,ko04147	Electron transfer flavoprotein FAD-binding domain
JAPHLIII_00138	2.04e-99	-	-	-	T	-	-	-	ECF transporter, substrate-specific component
JAPHLIII_00140	1.85e-121	XK27_02085	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_00141	2.35e-243	dhaK2	2.7.1.28, 2.7.1.29, 4.6.1.15	-	G	ko:K00863	ko00051,ko00561,ko00680,ko01100,ko01120,ko01200,ko04622,map00051,map00561,map00680,map01100,map01120,map01200,map04622	ko00000,ko00001,ko00002,ko01000	Dak1 domain
JAPHLIII_00142	3.88e-239	dhaK	2.7.1.121	-	G	ko:K05878	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Dak1 domain
JAPHLIII_00143	2.75e-131	dhaL	2.7.1.121	-	S	ko:K05879	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Dak2
JAPHLIII_00144	6.76e-75	dhaM	2.7.1.121	-	S	ko:K05881	ko00561,map00561	ko00000,ko00001,ko01000,ko02000	PTS system fructose IIA component
JAPHLIII_00145	1.63e-171	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
JAPHLIII_00146	2.65e-245	malR1	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator, LacI family
JAPHLIII_00147	1.83e-231	yvdE	-	-	K	-	-	-	helix_turn _helix lactose operon repressor
JAPHLIII_00148	0.0	malA1	3.2.1.10, 3.2.1.20	GH13,GH31	G	ko:K01182,ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain
JAPHLIII_00149	9.45e-299	mdxE	-	-	G	ko:K02027,ko:K15770,ko:K17237	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
JAPHLIII_00150	3.74e-302	malC	-	-	P	ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
JAPHLIII_00151	2.83e-206	malD	-	-	P	ko:K15772	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_00152	1.75e-191	malA	-	-	S	-	-	-	maltodextrose utilization protein MalA
JAPHLIII_00153	0.0	malS	3.2.1.1	GH13	G	ko:K01176	ko00500,ko01100,ko04973,map00500,map01100,map04973	ko00000,ko00001,ko01000	Glycogen debranching enzyme, glucanotransferase domain
JAPHLIII_00154	2.44e-267	msmX	-	-	P	ko:K10112	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
JAPHLIII_00155	0.0	mapA	2.4.1.8	GH65	G	ko:K00691	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	hydrolase, family 65, central catalytic
JAPHLIII_00156	0.0	-	3.2.1.96	-	G	ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	Glycosyl hydrolase family 85
JAPHLIII_00157	8.23e-61	ygbF	-	-	S	-	-	-	Sugar efflux transporter for intercellular exchange
JAPHLIII_00158	2.86e-214	scrK	2.7.1.4	-	GK	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	ROK family
JAPHLIII_00159	0.0	melA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
JAPHLIII_00160	0.0	scrA	2.7.1.211	-	G	ko:K02808,ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
JAPHLIII_00161	0.0	scrB	3.2.1.26	GH32	G	ko:K01193	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	invertase
JAPHLIII_00162	2.4e-230	scrR	-	-	K	ko:K02529,ko:K03484	-	ko00000,ko03000	Transcriptional regulator, LacI family
JAPHLIII_00163	0.0	-	3.2.1.10, 3.2.1.20	GH13,GH31	G	ko:K01182,ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
JAPHLIII_00164	1.16e-210	-	1.1.1.1	-	C	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	nadph quinone reductase
JAPHLIII_00165	8.92e-317	nhaC	-	-	C	ko:K03315	-	ko00000,ko02000	Na H antiporter NhaC
JAPHLIII_00166	0.0	malL	3.2.1.10, 3.2.1.20	GH13,GH31	G	ko:K01182,ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
JAPHLIII_00167	6.59e-170	mleR	-	-	K	-	-	-	LysR substrate binding domain
JAPHLIII_00168	0.0	-	-	-	M	-	-	-	domain protein
JAPHLIII_00170	1.03e-201	-	-	-	K	ko:K20480	ko02024,map02024	ko00000,ko00001,ko03000	Helix-turn-helix
JAPHLIII_00171	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
JAPHLIII_00172	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
JAPHLIII_00173	9.25e-103	yiaC	-	-	K	ko:K03826	-	ko00000,ko01000	Acetyltransferase (GNAT) domain
JAPHLIII_00174	1.45e-278	serA	1.1.1.399, 1.1.1.95	-	EH	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JAPHLIII_00175	1.24e-259	serC	2.6.1.52	-	E	ko:K00831	ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JAPHLIII_00176	6.7e-148	pgm1	-	-	G	-	-	-	phosphoglycerate mutase
JAPHLIII_00177	8.96e-108	yghZ	-	-	C	ko:K19265	-	ko00000,ko01000	Aldo keto reductase family protein
JAPHLIII_00178	3.83e-111	yghZ	-	-	C	ko:K19265	-	ko00000,ko01000	Aldo keto reductase family protein
JAPHLIII_00179	6.33e-46	-	-	-	-	-	-	-	-
JAPHLIII_00180	4.69e-79	-	-	-	S	-	-	-	Domain of unknown function (DU1801)
JAPHLIII_00181	2.53e-207	fbpA	-	-	K	-	-	-	Domain of unknown function (DUF814)
JAPHLIII_00182	2.6e-278	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JAPHLIII_00183	3.81e-18	-	-	-	-	-	-	-	-
JAPHLIII_00184	3.18e-77	crcB	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JAPHLIII_00185	5.66e-74	crcB	-	-	D	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JAPHLIII_00186	0.0	-	-	-	S	ko:K18231,ko:K19349	ko02010,map02010	br01600,ko00000,ko00001,ko01504,ko02000	ATPases associated with a variety of cellular activities
JAPHLIII_00187	0.0	-	-	-	L	ko:K07487	-	ko00000	Transposase
JAPHLIII_00188	2.13e-150	ykoC	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	cobalt transport
JAPHLIII_00189	0.0	-	-	-	P	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
JAPHLIII_00190	1.43e-131	-	-	-	S	ko:K16925	-	ko00000,ko00002,ko02000	ABC transporter permease
JAPHLIII_00191	6.07e-117	gpo	1.11.1.9	-	O	ko:K00432	ko00480,ko00590,ko04918,map00480,map00590,map04918	ko00000,ko00001,ko01000	Belongs to the glutathione peroxidase family
JAPHLIII_00192	5.3e-202	dkgB	-	-	S	-	-	-	reductase
JAPHLIII_00193	1.28e-102	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
JAPHLIII_00194	1.2e-91	-	-	-	-	-	-	-	-
JAPHLIII_00195	3.16e-170	nagB	3.5.99.6	-	G	ko:K02564	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
JAPHLIII_00197	0.0	pepD1	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
JAPHLIII_00198	0.0	mtlA	2.7.1.197	-	G	ko:K02799,ko:K02800	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
JAPHLIII_00199	0.0	mtlR	-	-	K	ko:K03483	-	ko00000,ko03000	Mga helix-turn-helix domain
JAPHLIII_00200	5.33e-103	mtlF	2.7.1.197	-	G	ko:K02798	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_00201	2.15e-281	mtlD	1.1.1.17	-	C	ko:K00009	ko00051,map00051	ko00000,ko00001,ko01000	mannitol-1-phosphate 5-dehydrogenase activity
JAPHLIII_00202	1.21e-111	-	-	-	-	-	-	-	-
JAPHLIII_00203	4.81e-76	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
JAPHLIII_00204	5.92e-67	-	-	-	-	-	-	-	-
JAPHLIII_00205	4.99e-125	-	-	-	-	-	-	-	-
JAPHLIII_00206	2.98e-90	-	-	-	-	-	-	-	-
JAPHLIII_00207	1.2e-106	ndk	2.7.4.6	-	F	ko:K00940	ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016	ko00000,ko00001,ko00002,ko01000,ko04131	Belongs to the NDK family
JAPHLIII_00208	0.0	-	-	-	S	ko:K13730	ko05100,map05100	ko00000,ko00001	Uncharacterized protein conserved in bacteria (DUF2252)
JAPHLIII_00209	1.82e-126	-	-	-	S	ko:K19784	-	ko00000	NADPH-dependent FMN reductase
JAPHLIII_00210	8.67e-124	cysE	2.3.1.30	-	E	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	ko00000,ko00001,ko00002,ko01000	Bacterial transferase hexapeptide (six repeats)
JAPHLIII_00211	8.21e-268	mccB	4.4.1.1, 4.4.1.2, 4.4.1.8	-	E	ko:K01760,ko:K17217	ko00260,ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00260,map00270,map00450,map00920,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	cystathionine
JAPHLIII_00212	7.54e-211	mccA	2.5.1.134, 2.5.1.47	-	E	ko:K01738,ko:K17216	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the cysteine synthase cystathionine beta- synthase family
JAPHLIII_00213	6.72e-203	map	3.4.11.18	-	E	ko:K01265	-	ko00000,ko01000,ko01002	Methionine Aminopeptidase
JAPHLIII_00214	1.27e-181	pnuC	-	-	H	ko:K03811	-	ko00000,ko02000	nicotinamide mononucleotide transporter
JAPHLIII_00215	7.55e-58	-	-	-	S	-	-	-	Protein of unknown function (DUF2089)
JAPHLIII_00216	2.21e-56	-	-	-	-	-	-	-	-
JAPHLIII_00217	1.68e-166	treR	-	-	K	ko:K03486	-	ko00000,ko03000	UTRA
JAPHLIII_00218	0.0	treC	3.2.1.93	GH13	G	ko:K01226	ko00500,map00500	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
JAPHLIII_00219	0.0	pts4ABC	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
JAPHLIII_00220	0.0	pts5ABC	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
JAPHLIII_00221	2.6e-185	-	-	-	-	-	-	-	-
JAPHLIII_00222	1.21e-94	tagD	2.7.7.15, 2.7.7.39	-	IM	ko:K00968,ko:K00980	ko00440,ko00564,ko01100,ko05231,map00440,map00564,map01100,map05231	ko00000,ko00001,ko00002,ko01000	Glycerol-3-phosphate cytidylyltransferase
JAPHLIII_00223	4.5e-303	tagB	2.7.8.12, 2.7.8.45	-	M	ko:K09809,ko:K21591	-	ko00000,ko01000	glycerophosphotransferase
JAPHLIII_00224	0.0	tagF2	2.7.8.12	-	H	ko:K09809	-	ko00000,ko01000	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
JAPHLIII_00225	1.84e-203	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
JAPHLIII_00226	3.37e-129	ubiX	2.5.1.129	-	H	ko:K03186	ko00130,ko00627,ko00940,ko01100,ko01110,ko01120,ko01220,map00130,map00627,map00940,map01100,map01110,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN
JAPHLIII_00227	9.53e-93	-	-	-	-	-	-	-	-
JAPHLIII_00228	8.9e-96	ywnA	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_00229	5.2e-156	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_00230	5.71e-301	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
JAPHLIII_00231	1.15e-152	-	-	-	-	-	-	-	-
JAPHLIII_00232	2.92e-57	-	-	-	-	-	-	-	-
JAPHLIII_00233	1.55e-55	-	-	-	-	-	-	-	-
JAPHLIII_00234	0.0	ydiC	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_00235	2.2e-86	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
JAPHLIII_00236	1.01e-154	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902 family
JAPHLIII_00237	2.45e-315	hpk2	-	-	T	-	-	-	Histidine kinase
JAPHLIII_00238	1.56e-164	rrp2	-	-	K	-	-	-	Transcriptional regulatory protein, C terminal
JAPHLIII_00239	2.42e-65	-	-	-	-	-	-	-	-
JAPHLIII_00240	1.96e-167	yidA	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
JAPHLIII_00241	6.86e-311	licC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_00242	3.35e-75	-	-	-	-	-	-	-	-
JAPHLIII_00243	2.87e-56	-	-	-	-	-	-	-	-
JAPHLIII_00244	1.76e-236	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
JAPHLIII_00245	0.0	loxD	1.1.3.15	-	C	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	ko00000,ko00001,ko01000	FAD linked oxidases, C-terminal domain
JAPHLIII_00246	1.49e-63	-	-	-	-	-	-	-	-
JAPHLIII_00247	2.04e-158	ywaC	2.7.6.5	-	S	ko:K00951,ko:K07816	ko00230,map00230	ko00000,ko00001,ko01000	RelA SpoT domain protein
JAPHLIII_00248	1.17e-135	-	-	-	K	-	-	-	transcriptional regulator
JAPHLIII_00249	0.0	ydgH	-	-	S	ko:K06994	-	ko00000	MMPL family
JAPHLIII_00250	1.18e-138	tag	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	glycosylase
JAPHLIII_00251	0.0	-	-	-	S	-	-	-	Leucine-rich repeat (LRR) protein
JAPHLIII_00252	1.01e-292	vex3	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	MacB-like periplasmic core domain
JAPHLIII_00253	4.87e-156	vex2	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_00254	1.13e-171	-	-	-	V	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_00255	2.63e-154	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_00256	7.98e-80	-	-	-	M	-	-	-	Lysin motif
JAPHLIII_00257	1.43e-82	-	-	-	M	-	-	-	LysM domain protein
JAPHLIII_00258	4.2e-88	gcsH1	-	-	E	ko:K02437	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	ko00000,ko00001,ko00002	Glycine cleavage H-protein
JAPHLIII_00259	4.47e-229	-	-	-	-	-	-	-	-
JAPHLIII_00260	6.88e-170	-	-	-	-	-	-	-	-
JAPHLIII_00261	0.0	uvrB3	3.1.12.1	-	KL	ko:K07464	-	ko00000,ko01000,ko02048	DEAD_2
JAPHLIII_00262	2.03e-75	-	-	-	-	-	-	-	-
JAPHLIII_00263	3.74e-284	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JAPHLIII_00264	1.08e-101	-	-	-	S	ko:K02348	-	ko00000	GNAT family
JAPHLIII_00265	1.24e-99	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_00266	9.59e-288	yumB	1.6.99.3	-	C	ko:K03885	ko00190,map00190	ko00000,ko00001,ko01000	NADH dehydrogenase
JAPHLIII_00267	0.0	-	-	-	L	ko:K07487	-	ko00000	Transposase
JAPHLIII_00268	6.01e-51	-	-	-	-	-	-	-	-
JAPHLIII_00270	1.04e-35	-	-	-	-	-	-	-	-
JAPHLIII_00271	1.86e-31	-	-	-	U	-	-	-	Preprotein translocase subunit SecB
JAPHLIII_00272	5.3e-265	potD	-	-	P	ko:K11069	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_00273	9.24e-180	potC	-	-	P	ko:K11070	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_00274	9e-190	potB	-	-	P	ko:K11071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_00275	1.46e-262	potA	3.6.3.30, 3.6.3.31	-	P	ko:K02010,ko:K11072	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
JAPHLIII_00276	1.5e-124	-	-	-	K	-	-	-	Cupin domain
JAPHLIII_00277	8.08e-110	-	-	-	S	-	-	-	ASCH
JAPHLIII_00278	1.88e-111	-	-	-	K	-	-	-	GNAT family
JAPHLIII_00279	2.14e-117	-	-	-	K	-	-	-	acetyltransferase
JAPHLIII_00280	2.06e-30	-	-	-	-	-	-	-	-
JAPHLIII_00281	5.05e-79	-	-	-	K	ko:K07979	-	ko00000,ko03000	helix_turn_helix gluconate operon transcriptional repressor
JAPHLIII_00282	1.85e-208	-	-	-	V	ko:K01990,ko:K16921	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_00283	1.08e-243	-	-	-	-	-	-	-	-
JAPHLIII_00284	0.0	acdH	1.1.1.1, 1.2.1.10, 1.2.1.87	-	C	ko:K04072,ko:K13922	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00640,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00640,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	Aldehyde dehydrogenase family
JAPHLIII_00285	8.16e-207	fba	4.1.2.13, 4.1.2.29	-	G	ko:K01624,ko:K03339	ko00010,ko00030,ko00051,ko00562,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00562,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-1,6-bisphosphate aldolase, class II
JAPHLIII_00287	2.36e-305	xylP1	-	-	G	-	-	-	MFS/sugar transport protein
JAPHLIII_00288	1.43e-170	hflC	-	-	O	ko:K04087	-	ko00000,ko00002,ko01000	prohibitin homologues
JAPHLIII_00289	7.28e-42	-	-	-	-	-	-	-	-
JAPHLIII_00290	0.0	pepD2	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
JAPHLIII_00291	6.4e-54	-	-	-	-	-	-	-	-
JAPHLIII_00292	1.54e-123	bioY	-	-	S	ko:K03523	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	BioY family
JAPHLIII_00293	1.49e-227	birA	6.3.4.15	-	H	ko:K03524	ko00780,ko01100,map00780,map01100	ko00000,ko00001,ko01000,ko03000	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
JAPHLIII_00294	1.4e-81	-	-	-	S	-	-	-	CHY zinc finger
JAPHLIII_00295	2.21e-284	mtnE	-	-	E	ko:K08969	ko00270,ko01100,map00270,map01100	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
JAPHLIII_00296	6.39e-280	-	-	-	-	-	-	-	-
JAPHLIII_00297	1.96e-224	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
JAPHLIII_00298	8.13e-199	tagG	-	-	U	ko:K09692	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Transport permease protein
JAPHLIII_00299	9.42e-258	tagH	3.6.3.40	-	GM	ko:K09693	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system
JAPHLIII_00300	2.76e-59	-	-	-	-	-	-	-	-
JAPHLIII_00301	2.39e-121	-	-	-	K	-	-	-	Transcriptional regulator PadR-like family
JAPHLIII_00302	0.0	-	-	-	P	-	-	-	Major Facilitator Superfamily
JAPHLIII_00303	1.05e-308	amt	-	-	P	ko:K03320	-	ko00000,ko02000	ammonium transporter
JAPHLIII_00304	9e-227	hicD1	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
JAPHLIII_00305	8.95e-60	-	-	-	-	-	-	-	-
JAPHLIII_00306	1.05e-132	zmp1	-	-	O	-	-	-	Zinc-dependent metalloprotease
JAPHLIII_00307	7.16e-155	rpiA2	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
JAPHLIII_00308	0.0	sufI	-	-	Q	-	-	-	Multicopper oxidase
JAPHLIII_00309	5.34e-72	-	-	-	S	ko:K08987	-	ko00000	Protein of unknown function (DUF1304)
JAPHLIII_00310	1.31e-124	yxkA	-	-	S	ko:K06910	-	ko00000	Phosphatidylethanolamine-binding protein
JAPHLIII_00311	1.61e-294	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
JAPHLIII_00312	5.89e-108	-	-	-	K	-	-	-	Winged helix-turn-helix transcription repressor, HrcA DNA-binding
JAPHLIII_00313	2.16e-103	-	-	-	-	-	-	-	-
JAPHLIII_00314	2.43e-103	accB3	-	-	I	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
JAPHLIII_00315	8.62e-223	rihA	3.2.2.1	-	F	ko:K01239,ko:K01250,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	Nucleoside
JAPHLIII_00316	1.77e-207	yneD	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
JAPHLIII_00317	0.0	-	-	-	-	-	-	-	-
JAPHLIII_00318	1.42e-102	-	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	RNA-DNA hybrid ribonuclease activity
JAPHLIII_00319	0.0	proWX	-	-	EM	ko:K05845,ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Periplasmic glycine betaine choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)
JAPHLIII_00320	2.7e-230	proV	-	-	E	ko:K05847	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_00321	0.0	gshR	1.8.1.7	-	C	ko:K00383	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Glutathione reductase
JAPHLIII_00322	0.0	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JAPHLIII_00323	0.0	glpD	1.1.3.21, 1.1.5.3	-	C	ko:K00105,ko:K00111	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	C-terminal domain of alpha-glycerophosphate oxidase
JAPHLIII_00324	2.14e-174	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
JAPHLIII_00325	1.96e-224	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
JAPHLIII_00326	0.0	-	-	-	M	-	-	-	domain protein
JAPHLIII_00327	1.46e-91	-	-	-	M	-	-	-	dTDP-4-dehydrorhamnose reductase activity
JAPHLIII_00329	4.51e-144	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
JAPHLIII_00330	4.06e-47	-	-	-	-	-	-	-	-
JAPHLIII_00332	1.15e-39	-	-	-	-	-	-	-	-
JAPHLIII_00333	3.27e-81	-	-	-	-	-	-	-	-
JAPHLIII_00335	4.56e-154	lacA	2.3.1.18, 2.3.1.79	-	S	ko:K00633,ko:K00661	-	ko00000,ko01000	Maltose acetyltransferase
JAPHLIII_00336	8.72e-260	-	-	-	EGP	-	-	-	Transporter, major facilitator family protein
JAPHLIII_00337	4.15e-188	-	3.1.3.102, 3.1.3.104, 3.1.3.23	-	G	ko:K07757,ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Sucrose-6F-phosphate phosphohydrolase
JAPHLIII_00338	2.35e-212	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_00339	1.39e-190	-	-	-	S	-	-	-	hydrolase
JAPHLIII_00340	0.0	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
JAPHLIII_00341	5.09e-264	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
JAPHLIII_00345	3.65e-66	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
JAPHLIII_00346	1.15e-43	-	-	-	-	-	-	-	-
JAPHLIII_00347	6.24e-25	plnR	-	-	-	-	-	-	-
JAPHLIII_00348	3.68e-140	-	-	-	-	-	-	-	-
JAPHLIII_00349	3.29e-32	plnK	-	-	-	-	-	-	-
JAPHLIII_00350	8.53e-34	plnJ	-	-	-	-	-	-	-
JAPHLIII_00351	3.98e-19	-	-	-	-	-	-	-	-
JAPHLIII_00352	1.34e-156	plnP	-	-	S	-	-	-	CAAX protease self-immunity
JAPHLIII_00354	1.42e-93	-	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
JAPHLIII_00355	1.18e-170	plnD	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
JAPHLIII_00356	4.71e-166	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_00357	1.93e-31	plnF	-	-	-	-	-	-	-
JAPHLIII_00358	8.82e-32	-	-	-	-	-	-	-	-
JAPHLIII_00359	0.0	comA	-	-	V	ko:K06147,ko:K06148,ko:K12292,ko:K20344	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko01000,ko02000	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
JAPHLIII_00360	2.75e-302	mesE	-	-	M	ko:K12293,ko:K20345	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko02000	Transport protein ComB
JAPHLIII_00361	8.7e-139	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_00362	2.3e-151	plnU	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_00363	1.25e-141	-	-	-	V	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_00364	3.9e-146	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_00365	4.23e-64	axe	-	-	K	ko:K21498	-	ko00000,ko02048	Helix-turn-helix XRE-family like proteins
JAPHLIII_00366	0.0	-	-	-	L	-	-	-	DNA helicase
JAPHLIII_00367	9.73e-180	mtnU	3.5.1.3	-	S	ko:K13566	ko00250,map00250	ko00000,ko00001,ko01000	Carbon-nitrogen hydrolase
JAPHLIII_00368	8.19e-244	trpS	6.1.1.2	-	J	ko:K01867	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
JAPHLIII_00369	2.69e-166	-	-	-	K	-	-	-	UbiC transcription regulator-associated domain protein
JAPHLIII_00370	0.0	chbC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_00371	9.68e-34	-	-	-	-	-	-	-	-
JAPHLIII_00372	8.38e-98	-	-	-	S	-	-	-	Domain of unknown function (DUF3284)
JAPHLIII_00373	3.44e-38	celB	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_00374	4.22e-264	celB	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_00375	0.0	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_00376	6.97e-209	-	-	-	GK	-	-	-	ROK family
JAPHLIII_00377	9.75e-175	yecA	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
JAPHLIII_00378	7.22e-245	dus	-	-	J	-	-	-	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JAPHLIII_00379	8.64e-263	-	-	-	-	-	-	-	-
JAPHLIII_00380	5.08e-194	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
JAPHLIII_00381	1.36e-214	ppx	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
JAPHLIII_00382	5.59e-290	mvaA	1.1.1.88, 2.3.1.9	-	C	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the HMG-CoA reductase family
JAPHLIII_00383	4.65e-229	-	-	-	-	-	-	-	-
JAPHLIII_00384	6.15e-171	cobB	-	-	K	ko:K12410	-	ko00000,ko01000	SIR2 family
JAPHLIII_00385	1.12e-205	yunF	-	-	F	-	-	-	Protein of unknown function DUF72
JAPHLIII_00386	5.43e-91	-	-	-	F	-	-	-	DNA mismatch repair protein MutT
JAPHLIII_00387	0.0	metG	6.1.1.10	-	J	ko:K01874	ko00450,ko00970,map00450,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JAPHLIII_00388	4.08e-270	-	-	-	EGP	ko:K02030	-	ko00000,ko00002,ko02000	Drug resistance transporter Bcr CflA subfamily
JAPHLIII_00389	1.63e-187	tatD	-	-	L	ko:K03424	-	ko00000,ko01000	hydrolase, TatD family
JAPHLIII_00390	1.6e-127	rnmV	3.1.26.8	-	J	ko:K05985	-	ko00000,ko01000	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JAPHLIII_00391	2.5e-203	ksgA	2.1.1.182	-	J	ko:K02528	-	ko00000,ko01000,ko03009	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
JAPHLIII_00392	6.87e-50	veg	-	-	S	-	-	-	Biofilm formation stimulator VEG
JAPHLIII_00393	1.31e-208	ispE	2.7.1.148	-	F	ko:K00919,ko:K16924	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko02000	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JAPHLIII_00394	1.56e-229	-	-	-	S	ko:K06889	-	ko00000	Prolyl oligopeptidase family
JAPHLIII_00395	8.05e-166	adcC	-	-	P	ko:K02074,ko:K09817,ko:K11710	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
JAPHLIII_00396	6.39e-169	znuB	-	-	U	ko:K02075,ko:K09816	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC 3 transport family
JAPHLIII_00397	5.67e-27	-	-	-	M	ko:K21493	-	ko00000,ko01000,ko02048	self proteolysis
JAPHLIII_00398	8.4e-57	-	-	-	S	-	-	-	ankyrin repeats
JAPHLIII_00399	5.3e-49	-	-	-	-	-	-	-	-
JAPHLIII_00400	1.96e-189	purR	-	-	F	ko:K09685	-	ko00000,ko03000	pur operon repressor
JAPHLIII_00401	3.28e-298	glmU	2.3.1.157, 2.7.7.23	-	M	ko:K04042	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JAPHLIII_00402	1.1e-193	bla1	3.5.2.6	-	V	ko:K17836	ko00311,ko01130,ko01501,map00311,map01130,map01501	ko00000,ko00001,ko00002,ko01000,ko01504	Beta-lactamase enzyme family
JAPHLIII_00403	3.26e-228	prs	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JAPHLIII_00404	1.34e-234	-	-	-	S	-	-	-	DUF218 domain
JAPHLIII_00405	4.31e-179	-	-	-	-	-	-	-	-
JAPHLIII_00406	4.15e-191	yxeH	-	-	S	-	-	-	hydrolase
JAPHLIII_00407	0.0	ywfO	-	-	S	ko:K06885	-	ko00000	HD domain protein
JAPHLIII_00408	8.97e-200	lipL	2.3.1.200, 2.3.1.204	-	H	ko:K16869,ko:K18821	-	ko00000,ko01000	biotin lipoate A B protein ligase
JAPHLIII_00409	2.87e-101	ywiB	-	-	S	-	-	-	Domain of unknown function (DUF1934)
JAPHLIII_00410	2.96e-89	rpoE	-	-	K	ko:K03048	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko03021,ko03400	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
JAPHLIII_00411	0.0	pyrG	6.3.4.2	-	F	ko:K01937	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
JAPHLIII_00412	5.84e-312	serS	6.1.1.11	-	J	ko:K01875	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JAPHLIII_00413	2.28e-290	sdaC	-	-	E	ko:K03837	-	ko00000,ko02000	amino acid
JAPHLIII_00414	1.52e-158	sdhB	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	Serine dehydratase beta chain
JAPHLIII_00415	2.81e-202	sdaAA	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
JAPHLIII_00416	6.59e-170	-	-	-	S	-	-	-	YheO-like PAS domain
JAPHLIII_00417	4.01e-36	-	-	-	-	-	-	-	-
JAPHLIII_00418	8.48e-302	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JAPHLIII_00419	6.26e-306	rho	-	-	K	ko:K03628	ko03018,map03018	ko00000,ko00001,ko03019,ko03021	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JAPHLIII_00420	1.91e-55	rpmE2	-	-	J	ko:K02909	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L31
JAPHLIII_00421	1.05e-273	-	-	-	J	-	-	-	translation release factor activity
JAPHLIII_00422	3.14e-164	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	sortase family
JAPHLIII_00423	5.35e-121	lemA	-	-	S	ko:K03744	-	ko00000	LemA family
JAPHLIII_00424	4.58e-194	htpX	-	-	O	ko:K03799	-	ko00000,ko00002,ko01000,ko01002	Belongs to the peptidase M48B family
JAPHLIII_00425	1.84e-189	-	-	-	-	-	-	-	-
JAPHLIII_00426	0.0	murF	6.3.2.10	-	M	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
JAPHLIII_00427	0.0	cshA	3.6.4.13	-	F	ko:K05592	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
JAPHLIII_00428	9.32e-81	acpS	2.7.8.7	-	I	ko:K00997	ko00770,map00770	ko00000,ko00001,ko01000	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
JAPHLIII_00429	1.43e-274	alr	5.1.1.1	-	E	ko:K01775	ko00473,ko01100,ko01502,map00473,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JAPHLIII_00430	4.28e-84	ndoA	-	-	L	ko:K07171	-	ko00000,ko01000,ko02048	Toxic component of a toxin-antitoxin (TA) module
JAPHLIII_00431	0.0	kup	-	-	P	ko:K03549	-	ko00000,ko02000	Transport of potassium into the cell
JAPHLIII_00432	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
JAPHLIII_00433	3.7e-260	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
JAPHLIII_00434	3.61e-244	argC	1.2.1.38	-	E	ko:K00145	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JAPHLIII_00435	9.73e-294	argJ	2.3.1.1, 2.3.1.35	-	E	ko:K00620	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
JAPHLIII_00436	9.62e-166	argB	2.7.2.8	-	F	ko:K00930	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the acetylglutamate kinase family. ArgB subfamily
JAPHLIII_00437	1.74e-273	argD	2.6.1.11, 2.6.1.17	-	E	ko:K00821	ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	acetylornithine
JAPHLIII_00438	2.63e-241	argF	2.1.3.3	-	E	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JAPHLIII_00439	1.3e-110	queT	-	-	S	-	-	-	QueT transporter
JAPHLIII_00440	1.23e-209	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding proteins, family 5 Middle
JAPHLIII_00441	8.1e-157	pepL	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
JAPHLIII_00442	4.87e-148	-	-	-	S	-	-	-	(CBS) domain
JAPHLIII_00443	0.0	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
JAPHLIII_00444	2.79e-226	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
JAPHLIII_00445	1.43e-129	pth	3.1.1.29	-	J	ko:K01056	-	ko00000,ko01000,ko03012	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
JAPHLIII_00446	0.0	mfd	-	-	L	ko:K03723	ko03420,map03420	ko00000,ko00001,ko01000,ko03400	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JAPHLIII_00447	0.0	yabM	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
JAPHLIII_00448	7.72e-57	yabO	-	-	J	-	-	-	S4 domain protein
JAPHLIII_00450	1.17e-82	divIC	-	-	D	ko:K13052	-	ko00000,ko03036	Septum formation initiator
JAPHLIII_00451	1.07e-103	yabR	-	-	J	ko:K07571	-	ko00000	RNA binding
JAPHLIII_00452	7.47e-225	tilS	2.4.2.8, 6.3.4.19	-	J	ko:K04075,ko:K15780	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000,ko03016	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
JAPHLIII_00453	1.99e-80	tilS	2.4.2.8, 6.3.4.19	-	J	ko:K04075,ko:K15780	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000,ko03016	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
JAPHLIII_00454	4.3e-124	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
JAPHLIII_00455	0.0	ftsH	-	-	O	ko:K03798	-	ko00000,ko00002,ko01000,ko01002,ko03110	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JAPHLIII_00456	1.93e-209	hslO	-	-	O	ko:K04083	-	ko00000,ko03110	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JAPHLIII_00457	5.33e-243	dus	-	-	J	ko:K05540	-	ko00000,ko01000,ko03016	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JAPHLIII_00458	0.0	lysS	6.1.1.6	-	J	ko:K04567	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family
JAPHLIII_00461	1.35e-55	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
JAPHLIII_00464	0.0	dtpT	-	-	U	ko:K03305	-	ko00000	amino acid peptide transporter
JAPHLIII_00465	1.5e-194	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
JAPHLIII_00469	5.78e-37	-	-	-	S	-	-	-	Cupin 2, conserved barrel domain protein
JAPHLIII_00470	1.38e-71	-	-	-	S	-	-	-	Cupin domain
JAPHLIII_00471	3.62e-211	pphA	3.1.3.16	-	T	ko:K07313	-	ko00000,ko01000	Calcineurin-like phosphoesterase
JAPHLIII_00472	1.59e-247	ysdE	-	-	P	-	-	-	Citrate transporter
JAPHLIII_00473	1.06e-195	pnuC	-	-	H	ko:K03811	-	ko00000,ko02000	nicotinamide mononucleotide transporter
JAPHLIII_00474	5.35e-175	proC	1.5.1.2	-	E	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JAPHLIII_00475	8.37e-280	nagA	3.5.1.25	-	G	ko:K01443	ko00520,ko01130,map00520,map01130	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JAPHLIII_00476	5.41e-160	yvoA_2	-	-	K	ko:K03710	-	ko00000,ko03000	UbiC transcription regulator-associated domain protein
JAPHLIII_00477	5.44e-175	tagA	2.4.1.187	GT26	F	ko:K05946	ko05111,map05111	ko00000,ko00001,ko01000,ko01003	Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid
JAPHLIII_00478	0.0	pncB	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JAPHLIII_00479	5.27e-197	nadE	6.3.1.5	-	F	ko:K01916	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
JAPHLIII_00480	0.0	pacL	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
JAPHLIII_00481	6.3e-95	-	-	-	-	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	-
JAPHLIII_00482	0.0	tex	-	-	K	ko:K06959	-	ko00000	Tex-like protein N-terminal domain protein
JAPHLIII_00483	7.89e-109	ydcK	-	-	S	ko:K03095	-	ko00000	Belongs to the SprT family
JAPHLIII_00484	1.71e-302	hom	1.1.1.3	-	E	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	homoserine dehydrogenase
JAPHLIII_00485	8.77e-204	thrB	2.7.1.39	-	F	ko:K00872	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
JAPHLIII_00487	1e-200	-	-	-	G	-	-	-	Peptidase_C39 like family
JAPHLIII_00488	6.46e-218	manL	2.7.1.191, 2.7.1.202	-	G	ko:K02769,ko:K02793,ko:K02794	ko00051,ko00520,ko01100,ko01120,ko02060,map00051,map00520,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
JAPHLIII_00489	4.51e-172	manM	-	-	G	ko:K02746,ko:K02795	ko00051,ko00052,ko00520,ko01100,ko02060,map00051,map00052,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system
JAPHLIII_00490	1.87e-219	manN	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	system, mannose fructose sorbose family IID component
JAPHLIII_00491	9.05e-85	manO	-	-	S	-	-	-	Domain of unknown function (DUF956)
JAPHLIII_00492	0.0	levR	-	-	K	-	-	-	Sigma-54 interaction domain
JAPHLIII_00493	1.19e-92	levD	2.7.1.191, 2.7.1.202	-	G	ko:K02793,ko:K02794,ko:K11194	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system fructose IIA component
JAPHLIII_00494	4.5e-113	manX	2.7.1.191, 2.7.1.202	-	G	ko:K02769,ko:K02793,ko:K02794	ko00051,ko00520,ko01100,ko01120,ko02060,map00051,map00520,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
JAPHLIII_00495	3.02e-227	fabH	2.3.1.180	-	I	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JAPHLIII_00496	9.24e-85	accB1	-	-	I	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002	Biotin-requiring enzyme
JAPHLIII_00497	1.7e-315	accC1	6.3.4.14, 6.4.1.2	-	I	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Biotin carboxylase C-terminal domain
JAPHLIII_00498	1.49e-183	accD1	2.1.3.15, 6.4.1.2	-	I	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JAPHLIII_00499	1.23e-177	accA1	2.1.3.15, 6.4.1.2	-	I	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
JAPHLIII_00500	2.29e-234	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
JAPHLIII_00501	7.53e-215	mleP2	-	-	S	ko:K07088	-	ko00000	Transporter, auxin efflux carrier (AEC) family protein
JAPHLIII_00502	6.04e-227	-	-	-	EG	-	-	-	EamA-like transporter family
JAPHLIII_00503	3.3e-166	gpmA1	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JAPHLIII_00504	1.12e-147	zmp2	-	-	O	-	-	-	Zinc-dependent metalloprotease
JAPHLIII_00505	0.0	pepC	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
JAPHLIII_00506	1.62e-158	rpiA	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JAPHLIII_00507	5.96e-69	yjdJ	-	-	S	ko:K06975	-	ko00000	GCN5-related N-acetyl-transferase
JAPHLIII_00508	3.29e-127	dut	3.6.1.23	-	F	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	dUTP diphosphatase
JAPHLIII_00509	0.0	radA	-	-	O	ko:K04485	-	ko00000,ko03400	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JAPHLIII_00510	2.84e-264	yacL	-	-	S	-	-	-	domain protein
JAPHLIII_00511	0.0	gltX	6.1.1.24	-	J	ko:K09698	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JAPHLIII_00512	0.0	cysS	6.1.1.16	-	J	ko:K01883	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
JAPHLIII_00513	1.35e-92	mrnC	-	-	J	ko:K11145	-	ko00000,ko01000,ko03009	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
JAPHLIII_00514	1.49e-177	trmH	2.1.1.185	-	J	ko:K03218	-	ko00000,ko01000,ko03009	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JAPHLIII_00515	5.87e-127	yacP	-	-	S	ko:K06962	-	ko00000	YacP-like NYN domain
JAPHLIII_00516	1.12e-130	sigH	-	-	K	ko:K03088,ko:K03091,ko:K12296	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko03000,ko03021	Sigma-70 region 2
JAPHLIII_00517	4.55e-31	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
JAPHLIII_00518	1e-39	secE	-	-	U	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
JAPHLIII_00519	1.89e-128	nusG	-	-	K	ko:K02601	-	ko00000,ko03009,ko03021	Participates in transcription elongation, termination and antitermination
JAPHLIII_00520	2.81e-202	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
JAPHLIII_00521	9.76e-93	rplK	-	-	J	ko:K02867	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JAPHLIII_00522	7.7e-158	rplA	-	-	J	ko:K02863	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
JAPHLIII_00523	3.72e-105	rplJ	-	-	J	ko:K02864	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JAPHLIII_00524	2.76e-74	rplL	-	-	J	ko:K02935	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
JAPHLIII_00525	1.23e-274	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
JAPHLIII_00526	7.13e-64	-	-	-	S	-	-	-	Domain of unknown function DUF1829
JAPHLIII_00531	2.64e-251	-	-	-	S	ko:K15051	-	ko00000	DNA/RNA non-specific endonuclease
JAPHLIII_00534	9.87e-08	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
JAPHLIII_00538	1.05e-126	-	-	-	-	-	-	-	-
JAPHLIII_00541	8.32e-24	-	-	-	-	-	-	-	-
JAPHLIII_00544	2.8e-70	-	-	-	S	-	-	-	Bacteriophage Mu Gam like protein
JAPHLIII_00545	8.73e-80	-	-	-	-	-	-	-	-
JAPHLIII_00546	4.51e-43	-	-	-	L	-	-	-	Domain of unknown function (DUF4373)
JAPHLIII_00547	5.39e-66	-	-	-	-	-	-	-	-
JAPHLIII_00548	4.84e-108	-	-	-	-	-	-	-	-
JAPHLIII_00549	2.5e-85	-	-	-	L	-	-	-	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
JAPHLIII_00552	2.91e-20	-	-	-	-	-	-	-	-
JAPHLIII_00555	9.35e-13	-	-	-	S	-	-	-	YopX protein
JAPHLIII_00560	7.45e-26	-	-	-	-	-	-	-	-
JAPHLIII_00562	4.5e-61	-	-	-	L	-	-	-	transposase activity
JAPHLIII_00563	1.48e-236	-	-	-	S	-	-	-	Phage terminase, large subunit, PBSX family
JAPHLIII_00564	1.33e-137	-	-	-	S	-	-	-	Phage portal protein, SPP1 Gp6-like
JAPHLIII_00565	1.68e-52	-	-	-	S	-	-	-	Phage minor capsid protein 2
JAPHLIII_00567	2.45e-135	-	-	-	-	-	-	-	-
JAPHLIII_00568	5.98e-06	-	-	-	-	-	-	-	-
JAPHLIII_00573	3.36e-56	-	-	-	N	-	-	-	domain, Protein
JAPHLIII_00576	4.45e-181	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
JAPHLIII_00578	7.05e-124	-	-	-	S	-	-	-	Prophage endopeptidase tail
JAPHLIII_00581	8.35e-79	-	-	-	S	-	-	-	Domain of unknown function (DUF2479)
JAPHLIII_00585	2.81e-258	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
JAPHLIII_00586	5.33e-63	-	-	-	-	-	-	-	-
JAPHLIII_00587	1.19e-51	-	-	-	S	-	-	-	Bacteriophage holin
JAPHLIII_00591	1.01e-226	-	-	-	F	ko:K15051	-	ko00000	DNA/RNA non-specific endonuclease
JAPHLIII_00592	1.78e-88	-	-	-	L	-	-	-	nuclease
JAPHLIII_00593	0.0	mprF	2.3.2.3	-	S	ko:K14205	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JAPHLIII_00594	5.69e-49	-	-	-	K	-	-	-	Helix-turn-helix domain
JAPHLIII_00595	5.82e-141	yvdD	3.2.2.10	-	S	ko:K06966	ko00230,ko00240,map00230,map00240	ko00000,ko00001,ko01000	Belongs to the LOG family
JAPHLIII_00596	2.47e-253	nrdF	1.17.4.1	-	F	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JAPHLIII_00597	0.0	nrdE	1.17.4.1	-	F	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JAPHLIII_00598	8.42e-50	nrdH	-	-	O	ko:K06191	-	ko00000	Glutaredoxin
JAPHLIII_00599	6.7e-141	rsmC	2.1.1.172	-	J	ko:K00564	-	ko00000,ko01000,ko03009	Methyltransferase
JAPHLIII_00600	7.57e-119	tadA	3.5.4.33	-	F	ko:K11991	-	ko00000,ko01000,ko03016	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
JAPHLIII_00601	0.0	dnaX	2.7.7.7	-	L	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JAPHLIII_00602	2.05e-62	yaaK	-	-	S	ko:K09747	-	ko00000	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JAPHLIII_00603	6.22e-140	recR	-	-	L	ko:K06187	ko03440,map03440	ko00000,ko00001,ko03400	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JAPHLIII_00604	1.01e-51	yaaL	-	-	S	-	-	-	Protein of unknown function (DUF2508)
JAPHLIII_00605	2.22e-153	tmk	2.7.4.9	-	F	ko:K00943	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JAPHLIII_00606	1.39e-70	yaaQ	-	-	S	-	-	-	Cyclic-di-AMP receptor
JAPHLIII_00607	1.92e-238	holB	2.7.7.7	-	L	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
JAPHLIII_00608	8.46e-77	yabA	-	-	L	-	-	-	Involved in initiation control of chromosome replication
JAPHLIII_00609	2.64e-213	rsmI	2.1.1.198	-	H	ko:K07056	-	ko00000,ko01000,ko03009	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JAPHLIII_00610	3.17e-191	fat	3.1.2.21	-	I	ko:K01071	ko00061,ko01100,map00061,map01100	ko00000,ko00001,ko01000,ko01004	Acyl-ACP thioesterase
JAPHLIII_00611	2.86e-245	galE	5.1.3.2	-	M	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family
JAPHLIII_00612	2.18e-269	phnW	2.6.1.37	-	E	ko:K03430	ko00440,ko01100,ko01120,map00440,map01100,map01120	ko00000,ko00001,ko01000,ko01007	Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily
JAPHLIII_00613	1.97e-187	phnX	3.11.1.1	-	E	ko:K05306	ko00440,ko01100,ko01120,map00440,map01100,map01120	ko00000,ko00001,ko01000	Belongs to the HAD-like hydrolase superfamily. PhnX family
JAPHLIII_00614	1.36e-183	phnE1	-	-	U	ko:K02042	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_00615	5.35e-177	phnE2	-	-	U	ko:K02042	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphonate ABC transporter permease
JAPHLIII_00616	9.33e-177	phnC	3.6.3.28	-	P	ko:K02041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JAPHLIII_00617	3.46e-242	phnD	-	-	P	ko:K02044	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphonate ABC transporter
JAPHLIII_00618	3.25e-165	yeaZ	2.3.1.234	-	O	ko:K01409,ko:K14742	-	ko00000,ko01000,ko03016	Universal bacterial protein YeaZ
JAPHLIII_00619	4.66e-131	rimI	2.3.1.128	-	K	ko:K03789	-	ko00000,ko01000,ko03009	Ribosomal-protein-alanine acetyltransferase
JAPHLIII_00620	5.74e-108	rimI	2.3.1.128	-	K	ko:K03789	-	ko00000,ko01000,ko03009	This enzyme acetylates the N-terminal alanine of ribosomal protein S18
JAPHLIII_00621	3.62e-249	tsaD	2.3.1.234	-	J	ko:K01409	-	ko00000,ko01000,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JAPHLIII_00622	0.0	ydiF	-	-	S	ko:K06158	-	ko00000,ko03012	ABC transporter, ATP-binding protein
JAPHLIII_00623	3.67e-154	rex	-	-	K	ko:K01926	-	ko00000,ko03000	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
JAPHLIII_00624	1.96e-224	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
JAPHLIII_00625	1.68e-140	ydiL	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_00626	9.82e-55	groS	-	-	O	ko:K04078	-	ko00000,ko03029,ko03110	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JAPHLIII_00627	0.0	groL	-	-	O	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
JAPHLIII_00628	0.0	ydaO	-	-	E	-	-	-	amino acid
JAPHLIII_00629	7.29e-247	tagO	2.7.8.33, 2.7.8.35	-	M	ko:K02851	-	ko00000,ko01000,ko01003,ko01005	transferase
JAPHLIII_00630	6.57e-199	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
JAPHLIII_00631	3.7e-149	yvyE	3.4.13.9	-	S	ko:K01271	-	ko00000,ko01000,ko01002	YigZ family
JAPHLIII_00632	0.0	comFA	-	-	L	ko:K02240	-	ko00000,ko00002,ko02044	Helicase C-terminal domain protein
JAPHLIII_00633	3.43e-163	comFC	-	-	S	ko:K02242	-	ko00000,ko00002,ko02044	Competence protein
JAPHLIII_00634	1.27e-129	hpf	-	-	J	ko:K05808	-	ko00000,ko03009	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JAPHLIII_00635	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
JAPHLIII_00636	8.03e-256	prfB	-	-	J	ko:K02836	-	ko00000,ko03012	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JAPHLIII_00637	1.28e-276	minJ	-	-	O	-	-	-	Domain present in PSD-95, Dlg, and ZO-1/2.
JAPHLIII_00638	1.49e-170	phoP	-	-	K	ko:K07658	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator
JAPHLIII_00639	0.0	phoR	2.7.13.3	-	T	ko:K07636	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
JAPHLIII_00640	6.91e-201	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
JAPHLIII_00641	2.22e-206	pstC	-	-	P	ko:K02037	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	probably responsible for the translocation of the substrate across the membrane
JAPHLIII_00642	5.04e-200	pstA	-	-	P	ko:K02038	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphate transport system permease protein PstA
JAPHLIII_00643	9.78e-190	pstB2	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
JAPHLIII_00644	2.31e-179	pstB1	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
JAPHLIII_00645	1.55e-150	phoU	-	-	P	ko:K02039	-	ko00000	Plays a role in the regulation of phosphate uptake
JAPHLIII_00646	2.78e-65	pspC	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	positive regulation of macromolecule biosynthetic process
JAPHLIII_00647	2.87e-71	yvlD	-	-	S	ko:K08972	-	ko00000	Mycobacterial 4 TMS phage holin, superfamily IV
JAPHLIII_00648	2.55e-225	hprK	-	-	F	ko:K06023	-	ko00000,ko01000	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
JAPHLIII_00649	6.26e-213	lgt	-	-	M	ko:K13292	-	ko00000,ko01000	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JAPHLIII_00650	2.82e-235	gpsA	1.1.1.94	-	I	ko:K00057	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	Glycerol-3-phosphate dehydrogenase
JAPHLIII_00651	1.13e-218	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
JAPHLIII_00652	6.37e-160	-	-	-	T	-	-	-	Putative diguanylate phosphodiesterase
JAPHLIII_00653	0.0	nox	-	-	C	-	-	-	NADH oxidase
JAPHLIII_00654	8.65e-226	trxB	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
JAPHLIII_00655	4.31e-141	yviA	-	-	S	-	-	-	Protein of unknown function (DUF421)
JAPHLIII_00656	7.54e-99	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
JAPHLIII_00657	0.0	pgm	5.4.2.2	-	G	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
JAPHLIII_00658	5.9e-170	-	-	-	T	-	-	-	Putative diguanylate phosphodiesterase
JAPHLIII_00659	0.0	nox2	-	-	S	-	-	-	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
JAPHLIII_00660	1.89e-134	aad	3.4.13.22	-	E	ko:K08641	ko01502,ko02020,map01502,map02020	ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
JAPHLIII_00661	5.33e-268	blt	-	-	EGP	ko:K08153	-	ko00000,ko00002,ko02000	transporter
JAPHLIII_00662	9.45e-152	yfbR	-	-	S	ko:K07023	-	ko00000	HD containing hydrolase-like enzyme
JAPHLIII_00663	0.0	uvrB	-	-	L	ko:K03702	ko03420,map03420	ko00000,ko00001,ko03400	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
JAPHLIII_00664	0.0	uvrA	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
JAPHLIII_00665	2.21e-113	luxS	4.4.1.21	-	H	ko:K07173	ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111	ko00000,ko00001,ko00002,ko01000	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
JAPHLIII_00666	7.5e-302	argG	6.3.4.5	-	E	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the argininosuccinate synthase family. Type 1 subfamily
JAPHLIII_00667	0.0	argH	4.3.2.1	-	E	ko:K01755	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	argininosuccinate lyase
JAPHLIII_00668	8.62e-114	-	-	-	S	-	-	-	Short repeat of unknown function (DUF308)
JAPHLIII_00669	1.71e-207	yvcJ	-	-	S	ko:K06958	-	ko00000,ko03019	Displays ATPase and GTPase activities
JAPHLIII_00670	4.56e-243	yvcK	-	-	S	-	-	-	Required for morphogenesis under gluconeogenic growth conditions
JAPHLIII_00671	1.21e-215	whiA	-	-	K	ko:K09762	-	ko00000	May be required for sporulation
JAPHLIII_00672	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
JAPHLIII_00673	1.55e-225	-	1.1.1.26	-	CH	ko:K00015	ko00630,ko01100,ko01110,ko01120,map00630,map01100,map01110,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JAPHLIII_00674	5.11e-133	clpP	3.4.21.92	-	O	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
JAPHLIII_00676	1.14e-311	rpoN	-	-	K	ko:K03092	ko02020,ko05111,map02020,map05111	ko00000,ko00001,ko03021	Sigma-54 factor, core binding domain
JAPHLIII_00677	5.75e-242	cggR	-	-	K	ko:K05311	-	ko00000,ko03000	Putative sugar-binding domain
JAPHLIII_00678	2.02e-245	gap	1.2.1.12	-	G	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
JAPHLIII_00679	2.16e-284	pgk	2.7.2.3	-	F	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the phosphoglycerate kinase family
JAPHLIII_00680	7.15e-179	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
JAPHLIII_00681	0.0	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
JAPHLIII_00682	5.11e-171	-	-	-	-	-	-	-	-
JAPHLIII_00683	0.0	eriC	-	-	P	ko:K03281	-	ko00000	chloride
JAPHLIII_00684	1.76e-43	secG	-	-	U	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
JAPHLIII_00685	1.1e-178	est	3.1.1.1	-	S	ko:K03928	-	ko00000,ko01000	Serine aminopeptidase, S33
JAPHLIII_00686	0.0	rnr	-	-	J	ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko03016,ko03019	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
JAPHLIII_00687	2.4e-107	smpB	-	-	J	ko:K03664	-	ko00000	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
JAPHLIII_00688	0.0	-	-	-	M	-	-	-	Domain of unknown function (DUF5011)
JAPHLIII_00689	0.0	glnP	-	-	P	ko:K02029,ko:K02030,ko:K10036	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_00690	9.36e-171	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_00691	5.62e-137	-	-	-	-	-	-	-	-
JAPHLIII_00692	3.28e-198	ycsE	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
JAPHLIII_00693	1.4e-174	ung	3.2.2.27	-	L	ko:K03648	ko03410,ko05340,map03410,map05340	ko00000,ko00001,ko01000,ko03400	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JAPHLIII_00694	2.89e-226	pta	2.3.1.8, 3.6.3.21	-	C	ko:K00625,ko:K02028	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000,ko02000	phosphate acetyltransferase
JAPHLIII_00695	1.29e-105	ydiB	-	-	O	ko:K06925	-	ko00000,ko03016	Hydrolase, P-loop family
JAPHLIII_00696	2.52e-114	-	-	-	J	-	-	-	Acetyltransferase (GNAT) domain
JAPHLIII_00697	7.18e-131	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
JAPHLIII_00698	2.53e-198	exoA	3.1.11.2	-	L	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	exodeoxyribonuclease III
JAPHLIII_00699	3.09e-213	ysjB	-	-	S	ko:K03810	-	ko00000	Oxidoreductase family, NAD-binding Rossmann fold
JAPHLIII_00700	6.24e-214	murB	1.3.1.98	-	M	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation
JAPHLIII_00701	0.0	yvgP	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
JAPHLIII_00702	3.07e-119	-	-	-	K	-	-	-	helix_turn_helix multiple antibiotic resistance protein
JAPHLIII_00703	6.9e-157	-	-	-	S	-	-	-	Protein of unknown function (DUF1361)
JAPHLIII_00704	8.33e-192	dacA	2.7.7.85	-	S	ko:K18672	-	ko00000,ko01000	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JAPHLIII_00705	2.18e-182	ybbR	-	-	S	-	-	-	YbbR-like protein
JAPHLIII_00706	0.0	glmM	5.4.2.10	-	G	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko01000	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JAPHLIII_00707	0.0	glmS	2.6.1.16	-	M	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	ko00000,ko00001,ko01000,ko01002	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
JAPHLIII_00708	5.44e-159	-	-	-	T	-	-	-	EAL domain
JAPHLIII_00709	8.04e-190	-	3.1.3.23	-	S	ko:K07757	-	ko00000,ko01000	Sucrose-6F-phosphate phosphohydrolase
JAPHLIII_00710	1.21e-135	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_00711	2.07e-263	galM	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of alpha and beta anomers of maltose
JAPHLIII_00712	3.38e-70	-	-	-	-	-	-	-	-
JAPHLIII_00713	2.49e-95	-	-	-	-	-	-	-	-
JAPHLIII_00714	7.06e-169	nfrA	1.5.1.38	-	C	ko:K19285	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	nitroreductase
JAPHLIII_00715	7.34e-180	-	-	-	EGP	-	-	-	Transmembrane secretion effector
JAPHLIII_00716	2.09e-42	-	-	-	G	ko:K08217	-	br01600,ko00000,ko01504,ko02000	Transmembrane secretion effector
JAPHLIII_00717	0.0	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JAPHLIII_00718	5.03e-183	-	-	-	-	-	-	-	-
JAPHLIII_00720	5.45e-94	spx1	-	-	P	ko:K16509	-	ko00000	ArsC family
JAPHLIII_00721	3.88e-46	-	-	-	-	-	-	-	-
JAPHLIII_00722	3.45e-116	-	-	-	V	-	-	-	VanZ like family
JAPHLIII_00723	1.06e-314	-	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_00724	4.45e-226	ppx	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
JAPHLIII_00725	0.0	ppk	2.7.4.1	-	P	ko:K00937	ko00190,ko03018,map00190,map03018	ko00000,ko00001,ko01000,ko03019	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JAPHLIII_00726	0.0	ppx3	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
JAPHLIII_00727	6.68e-197	licD	-	-	M	ko:K07271	-	ko00000,ko01000	LicD family
JAPHLIII_00728	6.16e-107	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_00729	1.36e-27	-	-	-	-	-	-	-	-
JAPHLIII_00730	1.79e-287	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
JAPHLIII_00731	0.0	pox1	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
JAPHLIII_00732	5.47e-198	ribC1	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the ribF family
JAPHLIII_00733	0.0	pox2	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
JAPHLIII_00734	6.37e-232	pepR	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
JAPHLIII_00735	1.23e-229	birA	6.3.4.15	-	H	ko:K03524	ko00780,ko01100,map00780,map01100	ko00000,ko00001,ko01000,ko03000	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
JAPHLIII_00736	0.0	oatA	-	-	I	-	-	-	Acyltransferase
JAPHLIII_00737	0.0	pepX	3.4.14.11	-	E	ko:K01281	-	ko00000,ko01000,ko01002	Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
JAPHLIII_00738	1.89e-90	-	-	-	O	-	-	-	OsmC-like protein
JAPHLIII_00739	2.45e-63	-	-	-	-	-	-	-	-
JAPHLIII_00740	0.0	yhdG	-	-	E	ko:K03294	-	ko00000	Amino Acid
JAPHLIII_00741	2.49e-114	-	-	-	-	-	-	-	-
JAPHLIII_00742	7.76e-193	pdxK	2.7.1.35	-	H	ko:K00868	ko00750,ko01100,map00750,map01100	ko00000,ko00001,ko01000	Phosphomethylpyrimidine kinase
JAPHLIII_00743	7.48e-96	-	-	-	F	-	-	-	Nudix hydrolase
JAPHLIII_00744	1.48e-27	-	-	-	-	-	-	-	-
JAPHLIII_00745	7.32e-136	gmk2	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Guanylate kinase
JAPHLIII_00746	2.02e-106	zur	-	-	P	ko:K02076,ko:K03711	-	ko00000,ko03000	Belongs to the Fur family
JAPHLIII_00747	8.84e-18	-	3.2.1.14	GH18	-	ko:K01183	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	-
JAPHLIII_00748	1.01e-188	-	-	-	-	-	-	-	-
JAPHLIII_00750	6.94e-146	gph1	3.1.3.18	-	S	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	ko00000,ko00001,ko01000	HAD hydrolase, family IA, variant
JAPHLIII_00751	3.21e-268	aspC	2.6.1.57	-	E	ko:K00832,ko:K00841	ko00270,ko00300,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
JAPHLIII_00752	1.03e-217	ldhD	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JAPHLIII_00753	5.2e-54	-	-	-	-	-	-	-	-
JAPHLIII_00755	9.36e-172	glnQ	-	-	E	ko:K10041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_00756	3.39e-190	glnH	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
JAPHLIII_00757	8.99e-140	glnM	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_00758	1.27e-141	glnP	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_00759	1.22e-108	-	-	-	G	ko:K02777	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	ko00000,ko00001,ko00002,ko01000,ko02000	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
JAPHLIII_00760	4.68e-198	-	-	-	K	ko:K03488	-	ko00000,ko03000	CAT RNA binding domain
JAPHLIII_00761	0.0	-	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
JAPHLIII_00762	9.06e-182	-	3.5.1.105	-	G	ko:K03478	-	ko00000,ko01000	YdjC-like protein
JAPHLIII_00763	9.38e-317	steT	-	-	E	ko:K03294	-	ko00000	amino acid
JAPHLIII_00764	2.55e-95	-	-	-	K	-	-	-	helix_turn_helix multiple antibiotic resistance protein
JAPHLIII_00765	8.87e-191	-	-	-	S	-	-	-	Sulfite exporter TauE/SafE
JAPHLIII_00766	3.08e-93	-	-	-	K	-	-	-	MarR family
JAPHLIII_00767	3.22e-269	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
JAPHLIII_00768	2.93e-109	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
JAPHLIII_00769	1.81e-128	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_00770	5.95e-300	hflX	-	-	S	ko:K03665	-	ko00000,ko03009	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JAPHLIII_00771	4.6e-102	rppH3	-	-	F	-	-	-	NUDIX domain
JAPHLIII_00772	3.5e-64	sugE	-	-	U	ko:K11741	-	ko00000,ko02000	Multidrug resistance protein
JAPHLIII_00773	1.61e-36	-	-	-	-	-	-	-	-
JAPHLIII_00774	1.35e-165	pgm3	-	-	G	-	-	-	Phosphoglycerate mutase family
JAPHLIII_00775	2.07e-161	gpm2	-	-	G	-	-	-	Phosphoglycerate mutase family
JAPHLIII_00776	0.0	yjbQ	-	-	P	ko:K03455,ko:K03499	-	ko00000,ko02000	TrkA C-terminal domain protein
JAPHLIII_00777	4.16e-227	-	3.6.1.55	-	F	ko:K03574	-	ko00000,ko01000,ko03400	Belongs to the Nudix hydrolase family
JAPHLIII_00778	2.33e-145	-	-	-	S	ko:K03975	-	ko00000	SNARE associated Golgi protein
JAPHLIII_00779	0.0	helD	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	DNA helicase
JAPHLIII_00780	3.59e-212	fabK	1.3.1.9	-	S	ko:K02371	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Nitronate monooxygenase
JAPHLIII_00781	3.69e-230	coaA	2.7.1.33	-	F	ko:K00867	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Pantothenic acid kinase
JAPHLIII_00782	0.0	guaA	6.3.5.2	-	F	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the synthesis of GMP from XMP
JAPHLIII_00784	3.56e-171	spoVK	-	-	O	ko:K06413	-	ko00000	ATPase family associated with various cellular activities (AAA)
JAPHLIII_00786	9.16e-61	-	-	-	L	-	-	-	Helix-turn-helix domain
JAPHLIII_00787	1.51e-22	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
JAPHLIII_00788	8.56e-38	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
JAPHLIII_00789	5.34e-29	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
JAPHLIII_00790	4.16e-97	-	-	-	-	-	-	-	-
JAPHLIII_00791	1.08e-71	-	-	-	-	-	-	-	-
JAPHLIII_00792	1.37e-83	-	-	-	K	-	-	-	Helix-turn-helix domain
JAPHLIII_00793	1.29e-142	XK27_07075	-	-	V	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_00794	1.85e-75	-	-	-	K	-	-	-	HxlR-like helix-turn-helix
JAPHLIII_00795	1.11e-300	yceJ	-	-	EGP	ko:K08221	-	ko00000,ko02000	transporter
JAPHLIII_00796	3.5e-299	-	-	-	S	-	-	-	Cysteine-rich secretory protein family
JAPHLIII_00797	3.61e-61	-	-	-	S	-	-	-	MORN repeat
JAPHLIII_00798	0.0	XK27_09800	-	-	I	-	-	-	Acyltransferase family
JAPHLIII_00799	1.81e-50	ydaS	-	-	S	-	-	-	Transglycosylase associated protein
JAPHLIII_00800	1.95e-116	-	-	-	-	-	-	-	-
JAPHLIII_00801	5.74e-32	-	-	-	-	-	-	-	-
JAPHLIII_00802	1.1e-93	asp1	-	-	S	-	-	-	Asp23 family, cell envelope-related function
JAPHLIII_00803	1.04e-94	asp2	-	-	S	-	-	-	Asp23 family, cell envelope-related function
JAPHLIII_00804	3.75e-188	yisK	3.7.1.5, 4.1.1.68	-	Q	ko:K05921,ko:K16164	ko00350,ko01100,ko01120,ko01220,map00350,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Fumarylacetoacetate (FAA) hydrolase family
JAPHLIII_00805	2.11e-211	yjdB	-	-	S	-	-	-	Domain of unknown function (DUF4767)
JAPHLIII_00806	5.21e-62	-	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIA subunit
JAPHLIII_00807	2.66e-132	-	-	-	G	-	-	-	Glycogen debranching enzyme
JAPHLIII_00808	0.0	pepN	3.4.11.2	-	E	ko:K01256	ko00480,ko01100,map00480,map01100	ko00000,ko00001,ko01000,ko01002	aminopeptidase
JAPHLIII_00809	4.37e-108	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
JAPHLIII_00810	8.65e-285	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
JAPHLIII_00811	3.37e-60	-	-	-	S	-	-	-	MazG-like family
JAPHLIII_00812	5.66e-118	XK27_09665	-	-	G	ko:K15640	-	ko00000	Phosphoglycerate mutase family
JAPHLIII_00813	9.74e-86	-	-	-	M	-	-	-	MucBP domain
JAPHLIII_00814	0.0	-	-	-	M	-	-	-	MucBP domain
JAPHLIII_00815	1.42e-08	-	-	-	-	-	-	-	-
JAPHLIII_00816	1.27e-115	-	-	-	S	-	-	-	AAA domain
JAPHLIII_00817	1.06e-179	-	-	-	K	-	-	-	sequence-specific DNA binding
JAPHLIII_00818	1.09e-123	-	-	-	K	-	-	-	Helix-turn-helix domain
JAPHLIII_00819	1.37e-220	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_00820	0.0	-	-	-	C	-	-	-	FMN_bind
JAPHLIII_00822	2.49e-105	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_00823	1.41e-150	azoR	-	-	I	ko:K01118	-	ko00000,ko01000	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JAPHLIII_00824	0.0	asnS	6.1.1.22	-	J	ko:K01893	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Asparaginyl-tRNA synthetase
JAPHLIII_00825	3.39e-255	asnA	6.3.1.1	-	F	ko:K01914	ko00250,ko00460,ko01100,ko01110,ko01230,map00250,map00460,map01100,map01110,map01230	ko00000,ko00001,ko01000	aspartate--ammonia ligase
JAPHLIII_00826	0.0	pepDA	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
JAPHLIII_00827	5.38e-290	-	-	-	L	-	-	-	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JAPHLIII_00828	9.05e-55	-	-	-	-	-	-	-	-
JAPHLIII_00829	4.95e-44	-	-	-	L	-	-	-	leucine-zipper of insertion element IS481
JAPHLIII_00830	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
JAPHLIII_00831	1.65e-209	rluD2	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
JAPHLIII_00832	5.06e-68	-	-	-	K	-	-	-	helix_turn_helix, Arsenical Resistance Operon Repressor
JAPHLIII_00833	1.44e-179	-	-	-	S	-	-	-	NADPH-dependent FMN reductase
JAPHLIII_00834	6.48e-243	-	-	-	-	-	-	-	-
JAPHLIII_00835	3.42e-280	yibE	-	-	S	-	-	-	overlaps another CDS with the same product name
JAPHLIII_00836	8.44e-163	yibF	-	-	S	-	-	-	overlaps another CDS with the same product name
JAPHLIII_00837	3.36e-132	-	-	-	K	-	-	-	FR47-like protein
JAPHLIII_00838	1.5e-156	gpm5	-	-	G	-	-	-	Phosphoglycerate mutase family
JAPHLIII_00839	3.33e-64	-	-	-	-	-	-	-	-
JAPHLIII_00840	8.55e-246	-	-	-	I	-	-	-	alpha/beta hydrolase fold
JAPHLIII_00841	0.0	xylP2	-	-	G	-	-	-	symporter
JAPHLIII_00842	0.0	murE	6.3.2.13	-	M	ko:K01928	ko00300,ko00550,map00300,map00550	ko00000,ko00001,ko01000,ko01011	Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JAPHLIII_00843	1.2e-281	dapG	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Amino acid kinase family
JAPHLIII_00844	0.0	asnB	6.3.5.4	-	E	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	ko00000,ko00001,ko01000,ko01002	Asparagine synthase
JAPHLIII_00845	2.41e-66	azlD	-	-	S	-	-	-	Branched-chain amino acid transport protein (AzlD)
JAPHLIII_00846	1.43e-155	azlC	-	-	E	-	-	-	branched-chain amino acid
JAPHLIII_00847	1.75e-47	-	-	-	K	-	-	-	MerR HTH family regulatory protein
JAPHLIII_00848	9.04e-179	-	-	-	-	-	-	-	-
JAPHLIII_00849	1.11e-151	-	-	-	S	-	-	-	Domain of unknown function (DUF4811)
JAPHLIII_00850	0.0	ycnB	-	-	U	-	-	-	Belongs to the major facilitator superfamily
JAPHLIII_00851	7.79e-112	-	-	-	K	-	-	-	MerR HTH family regulatory protein
JAPHLIII_00852	1.36e-77	-	-	-	-	-	-	-	-
JAPHLIII_00853	2.94e-155	mntR	-	-	K	ko:K03709	-	ko00000,ko03000	iron dependent repressor
JAPHLIII_00854	1.78e-42	cspC	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock protein
JAPHLIII_00855	2.19e-167	-	-	-	S	-	-	-	Putative threonine/serine exporter
JAPHLIII_00856	7.76e-100	-	-	-	S	-	-	-	Threonine/Serine exporter, ThrE
JAPHLIII_00857	2.34e-242	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
JAPHLIII_00858	2.05e-153	-	-	-	I	-	-	-	phosphatase
JAPHLIII_00859	3.88e-198	-	-	-	I	-	-	-	alpha/beta hydrolase fold
JAPHLIII_00860	1.23e-128	yjcK	2.3.1.128	-	J	ko:K03790	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
JAPHLIII_00861	1.7e-118	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_00862	0.0	alsS	2.2.1.6	-	EH	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TPP enzyme family
JAPHLIII_00863	0.0	lysP	-	-	E	ko:K03293,ko:K11733	-	ko00000,ko02000	amino acid
JAPHLIII_00864	1.29e-153	dacB	3.4.17.14	-	M	ko:K07260	ko00550,ko01100,ko01502,ko02020,map00550,map01100,map01502,map02020	ko00000,ko00001,ko00002,ko01000,ko01002,ko01011,ko01504	D-alanyl-D-alanine carboxypeptidase
JAPHLIII_00865	1.11e-148	dgk2	-	-	F	-	-	-	deoxynucleoside kinase
JAPHLIII_00866	1.62e-294	serS	6.1.1.11	-	J	ko:K01875	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JAPHLIII_00874	9.78e-102	ctsR	-	-	K	ko:K03708	-	ko00000,ko03000	Belongs to the CtsR family
JAPHLIII_00875	0.0	clpC	-	-	O	ko:K03696	ko01100,map01100	ko00000,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
JAPHLIII_00876	1.16e-140	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_00877	0.0	rpoB	2.7.7.6	-	K	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JAPHLIII_00878	0.0	rpoC	2.7.7.6	-	K	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JAPHLIII_00879	8.58e-149	comC	3.4.23.43	-	NOU	ko:K02236	-	ko00000,ko00002,ko01000,ko02044	Bacterial Peptidase A24 N-terminal domain
JAPHLIII_00880	4.19e-92	rpsL	-	-	J	ko:K02950	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JAPHLIII_00881	1.19e-107	rpsG	-	-	J	ko:K02992	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
JAPHLIII_00882	0.0	fusA	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JAPHLIII_00883	4.46e-66	rpsJ	-	-	J	ko:K02946	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Involved in the binding of tRNA to the ribosomes
JAPHLIII_00884	4.34e-145	rplC	-	-	J	ko:K02906	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JAPHLIII_00885	9.83e-141	rplD	-	-	J	ko:K02926	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the polypeptide exit tunnel
JAPHLIII_00886	2.27e-59	rplW	-	-	J	ko:K02892	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
JAPHLIII_00887	6.61e-193	rplB	-	-	J	ko:K02886	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JAPHLIII_00888	1.85e-62	rpsS	-	-	J	ko:K02965	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JAPHLIII_00889	3.59e-69	rplV	-	-	J	ko:K02890	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JAPHLIII_00890	5.46e-152	rpsC	-	-	J	ko:K02982	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JAPHLIII_00891	8.29e-100	rplP	-	-	J	ko:K02878	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JAPHLIII_00892	1.11e-33	rpmC	-	-	J	ko:K02904	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uL29 family
JAPHLIII_00893	1.96e-54	rpsQ	-	-	J	ko:K02961	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JAPHLIII_00894	2.98e-78	rplN	-	-	J	ko:K02874	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JAPHLIII_00895	4.1e-67	rplX	-	-	J	ko:K02895	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JAPHLIII_00896	3.53e-123	rplE	-	-	J	ko:K02931	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JAPHLIII_00897	4.99e-88	rpsH	-	-	J	ko:K02994	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JAPHLIII_00898	2.14e-123	rplF	-	-	J	ko:K02933	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JAPHLIII_00899	1.75e-75	rplR	-	-	J	ko:K02881	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JAPHLIII_00900	5.32e-109	rpsE	-	-	J	ko:K02988	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JAPHLIII_00901	8.44e-34	rpmD	-	-	J	ko:K02907	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L30
JAPHLIII_00902	1.32e-91	rplO	-	-	J	ko:K02876	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
JAPHLIII_00903	5.95e-300	secY	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
JAPHLIII_00904	1.84e-160	adk	2.7.4.3	-	F	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
JAPHLIII_00905	9.87e-45	infA	-	-	J	ko:K02518	-	ko00000,ko03012	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JAPHLIII_00906	9.65e-79	rpsM	-	-	J	ko:K02952	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JAPHLIII_00907	7.71e-82	rpsK	-	-	J	ko:K02948	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JAPHLIII_00908	2.19e-220	rpoA	2.7.7.6	-	K	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JAPHLIII_00909	7.76e-81	rplQ	-	-	J	ko:K02879	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L17
JAPHLIII_00910	1.02e-233	hepT	2.5.1.30, 2.5.1.83	-	H	ko:K00805,ko:K21275	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
JAPHLIII_00911	1.41e-122	hepA	2.5.1.30	-	S	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Heptaprenyl diphosphate synthase component I
JAPHLIII_00912	5.37e-112	-	-	-	S	-	-	-	NusG domain II
JAPHLIII_00913	0.0	ndh	1.6.99.3	-	C	ko:K03885	ko00190,map00190	ko00000,ko00001,ko01000	NADH dehydrogenase
JAPHLIII_00914	9.15e-194	-	-	-	S	-	-	-	FMN_bind
JAPHLIII_00915	1.07e-264	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
JAPHLIII_00916	1.63e-196	ecfA1	-	-	P	ko:K16786	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JAPHLIII_00917	2.01e-211	ecfA2	-	-	P	ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JAPHLIII_00918	2.39e-184	ecfT	-	-	U	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JAPHLIII_00919	3.06e-194	truA	5.4.99.12	-	J	ko:K06173	-	ko00000,ko01000,ko03016	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
JAPHLIII_00920	4.58e-103	rplM	-	-	J	ko:K02871	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JAPHLIII_00921	8.98e-86	rpsI	-	-	J	ko:K02996	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS9 family
JAPHLIII_00922	8.51e-210	yitS	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
JAPHLIII_00923	7.05e-235	-	-	-	S	-	-	-	Membrane
JAPHLIII_00924	1.35e-261	-	-	-	C	-	-	-	Belongs to the LDH2 MDH2 oxidoreductase family
JAPHLIII_00925	0.0	tkt2	2.2.1.1	-	H	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JAPHLIII_00926	4.94e-213	aroE	1.1.1.25	-	E	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JAPHLIII_00927	3.3e-235	aroF	2.5.1.54	-	E	ko:K03856	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	DAHP synthetase I family
JAPHLIII_00928	3.51e-251	aroB	4.2.3.4	-	E	ko:K01735	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JAPHLIII_00929	5.35e-310	-	-	-	P	ko:K03319	-	ko00000	Sodium:sulfate symporter transmembrane region
JAPHLIII_00930	1.51e-69	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
JAPHLIII_00931	1.41e-147	-	4.2.1.2, 4.2.1.32	-	C	ko:K01676,ko:K03780	ko00020,ko00620,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00630,map00720,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible hydration of fumarate to (S)- malate
JAPHLIII_00932	5.21e-226	ttdA	4.2.1.32	-	C	ko:K03779	ko00630,map00630	ko00000,ko00001,ko01000	Fumarate hydratase (Fumerase)
JAPHLIII_00933	6.07e-252	-	-	-	K	-	-	-	Helix-turn-helix domain
JAPHLIII_00934	6.38e-196	citG	2.4.2.52	-	H	ko:K05966	ko02020,map02020	ko00000,ko00001,ko01000	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
JAPHLIII_00935	2.04e-170	mntB	3.6.3.35	-	P	ko:K02074,ko:K09820,ko:K19973	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
JAPHLIII_00936	3.54e-180	mtsB	-	-	U	ko:K19972,ko:K19976	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC 3 transport family
JAPHLIII_00937	5.19e-223	mntA	-	-	P	ko:K19975,ko:K19976	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
JAPHLIII_00938	4.8e-66	-	-	-	-	-	-	-	-
JAPHLIII_00939	9.2e-215	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
JAPHLIII_00940	0.0	citP	-	-	P	ko:K03319	-	ko00000	Sodium:sulfate symporter transmembrane region
JAPHLIII_00941	8.69e-230	citR	-	-	K	-	-	-	sugar-binding domain protein
JAPHLIII_00942	3.88e-264	mae	1.1.1.38	-	C	ko:K00027	ko00620,ko01200,ko02020,map00620,map01200,map02020	ko00000,ko00001,ko01000	Malic enzyme, NAD binding domain
JAPHLIII_00943	5.31e-242	citC	6.2.1.22	-	H	ko:K01910	ko02020,map02020	ko00000,ko00001,ko01000	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
JAPHLIII_00944	1.23e-58	citD	-	-	C	ko:K01646	ko02020,map02020	ko00000,ko00001	Covalent carrier of the coenzyme of citrate lyase
JAPHLIII_00945	3.32e-210	citE	4.1.3.34	-	G	ko:K01644	ko02020,map02020	ko00000,ko00001,ko01000	Belongs to the HpcH HpaI aldolase family
JAPHLIII_00946	0.0	citF	2.8.3.10	-	H	ko:K01643	ko02020,map02020	ko00000,ko00001,ko01000	Citrate (pro-3S)-lyase alpha chain
JAPHLIII_00947	8.08e-185	-	-	-	L	ko:K07482	-	ko00000	PFAM Integrase, catalytic core
JAPHLIII_00948	1.81e-60	-	-	-	K	-	-	-	sequence-specific DNA binding
JAPHLIII_00950	1.38e-19	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
JAPHLIII_00951	2.05e-231	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
JAPHLIII_00952	0.0	fumC	4.2.1.2	-	C	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	ko00000,ko00001,ko00002,ko01000	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
JAPHLIII_00953	0.0	frdA	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
JAPHLIII_00954	1.98e-122	citX	2.7.7.61	-	HI	ko:K05964	ko02020,map02020	ko00000,ko00001,ko01000	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
JAPHLIII_00955	2.62e-206	mleR2	-	-	K	-	-	-	LysR family transcriptional regulator
JAPHLIII_00956	6.5e-215	mleR	-	-	K	-	-	-	LysR family
JAPHLIII_00957	0.0	mleS	1.1.1.38, 4.1.1.101	-	C	ko:K00027,ko:K22212	ko00620,ko01120,ko01200,ko02020,map00620,map01120,map01200,map02020	ko00000,ko00001,ko01000	Malic enzyme
JAPHLIII_00958	2.6e-212	mleP2	-	-	S	ko:K07088	-	ko00000	Sodium Bile acid symporter family
JAPHLIII_00959	0.0	-	-	-	E	ko:K03294	-	ko00000	Amino Acid
JAPHLIII_00960	4.37e-128	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
JAPHLIII_00961	2.56e-34	-	-	-	-	-	-	-	-
JAPHLIII_00962	0.0	-	-	-	S	ko:K06889	-	ko00000	Alpha beta
JAPHLIII_00963	0.0	cydA	1.10.3.14	-	C	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	ubiquinol oxidase
JAPHLIII_00964	7.76e-234	cydB	1.10.3.14	-	C	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	Cytochrome d ubiquinol oxidase subunit II
JAPHLIII_00965	0.0	cydC	-	-	CO	ko:K16013	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydD
JAPHLIII_00966	0.0	cydD	-	-	CO	ko:K16012	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JAPHLIII_00967	2.68e-208	-	-	-	S	-	-	-	L,D-transpeptidase catalytic domain
JAPHLIII_00968	2.11e-233	hepT	2.5.1.30	-	H	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
JAPHLIII_00969	8.5e-213	menA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	1,4-dihydroxy-2-naphthoate
JAPHLIII_00970	3.86e-235	-	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
JAPHLIII_00971	9.78e-146	acmA	3.2.1.17, 3.2.1.96	-	NU	ko:K01185,ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	mannosyl-glycoprotein
JAPHLIII_00972	2.01e-134	xpt	2.4.2.22	-	F	ko:K03816	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
JAPHLIII_00973	1.13e-120	yebE	-	-	S	-	-	-	UPF0316 protein
JAPHLIII_00974	1.39e-279	purK2	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JAPHLIII_00975	0.0	pcrA	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase
JAPHLIII_00976	0.0	ligA	6.5.1.2	-	L	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	ko00000,ko00001,ko01000,ko03032,ko03400	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JAPHLIII_00977	9.48e-263	camS	-	-	S	-	-	-	sex pheromone
JAPHLIII_00978	5.11e-67	gatC	6.3.5.6, 6.3.5.7	-	J	ko:K02435	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JAPHLIII_00979	0.0	gatA	6.3.5.6, 6.3.5.7	-	J	ko:K02433	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
JAPHLIII_00980	0.0	gatB	6.3.5.6, 6.3.5.7	-	J	ko:K02434	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JAPHLIII_00981	1.59e-242	dagK	2.7.1.107	-	G	ko:K07029	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko01000	Lipid kinase
JAPHLIII_00982	0.0	rumA_2	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JAPHLIII_00983	5.56e-130	yobS	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_00984	0.0	yfgQ	-	-	P	ko:K12952	-	ko00000,ko01000	E1-E2 ATPase
JAPHLIII_00985	7.06e-307	pts13C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_00986	2.87e-215	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
JAPHLIII_00987	5.63e-196	gntR	-	-	K	-	-	-	rpiR family
JAPHLIII_00988	7.76e-186	lys	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
JAPHLIII_00989	7.34e-83	-	-	-	S	-	-	-	Domain of unknown function (DUF4828)
JAPHLIII_00990	6.22e-43	cspP	-	-	K	ko:K03704	-	ko00000,ko03000	'Cold-shock' DNA-binding domain
JAPHLIII_00991	7.89e-245	mocA	-	-	S	-	-	-	Oxidoreductase
JAPHLIII_00992	5.62e-316	yfmL	-	-	L	-	-	-	DEAD DEAH box helicase
JAPHLIII_00994	3.37e-97	int3	-	-	L	-	-	-	Belongs to the 'phage' integrase family
JAPHLIII_00995	1.52e-144	-	-	-	S	-	-	-	Protein of unknown function (DUF3644)
JAPHLIII_00998	5.83e-24	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
JAPHLIII_01000	5.18e-80	-	-	-	S	-	-	-	DNA binding
JAPHLIII_01006	2.51e-28	-	-	-	-	-	-	-	-
JAPHLIII_01008	9.04e-120	-	-	-	S	-	-	-	Bacteriophage Mu Gam like protein
JAPHLIII_01009	5.89e-153	-	-	-	S	-	-	-	AAA domain
JAPHLIII_01010	8.82e-111	-	-	-	S	-	-	-	Protein of unknown function (DUF669)
JAPHLIII_01011	2.06e-167	-	-	-	S	-	-	-	Putative HNHc nuclease
JAPHLIII_01012	1.33e-94	-	-	-	L	-	-	-	DnaD domain protein
JAPHLIII_01013	1.19e-186	-	-	-	L	ko:K02315	-	ko00000,ko03032	IstB-like ATP binding protein
JAPHLIII_01015	3.62e-48	-	-	-	-	-	-	-	-
JAPHLIII_01016	8.36e-20	-	-	-	-	-	-	-	-
JAPHLIII_01019	7.15e-37	-	-	-	S	-	-	-	YopX protein
JAPHLIII_01020	1.08e-27	-	-	-	-	-	-	-	-
JAPHLIII_01021	3.47e-08	-	-	-	-	-	-	-	-
JAPHLIII_01023	1.1e-22	-	-	-	-	-	-	-	-
JAPHLIII_01024	5.96e-117	-	-	-	L	-	-	-	HNH nucleases
JAPHLIII_01025	1.64e-103	-	-	-	S	-	-	-	Phage terminase, small subunit
JAPHLIII_01026	0.0	-	-	-	S	-	-	-	Phage Terminase
JAPHLIII_01027	1.92e-34	-	-	-	S	-	-	-	Protein of unknown function (DUF1056)
JAPHLIII_01028	1.83e-279	-	-	-	S	-	-	-	Phage portal protein
JAPHLIII_01029	2.67e-161	-	-	-	S	-	-	-	Clp protease
JAPHLIII_01030	2.24e-266	-	-	-	S	-	-	-	Phage capsid family
JAPHLIII_01031	1.6e-66	-	-	-	S	-	-	-	Phage gp6-like head-tail connector protein
JAPHLIII_01032	1.21e-32	-	-	-	S	-	-	-	Phage head-tail joining protein
JAPHLIII_01033	3.27e-51	-	-	-	-	-	-	-	-
JAPHLIII_01035	4.49e-92	-	-	-	S	-	-	-	Phage tail tube protein
JAPHLIII_01037	5.58e-06	-	-	-	-	-	-	-	-
JAPHLIII_01038	0.0	-	-	-	S	-	-	-	peptidoglycan catabolic process
JAPHLIII_01039	0.0	-	-	-	S	-	-	-	Phage tail protein
JAPHLIII_01040	0.0	-	-	-	S	-	-	-	Phage minor structural protein
JAPHLIII_01044	1.44e-80	-	-	-	-	-	-	-	-
JAPHLIII_01045	4.66e-257	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
JAPHLIII_01046	8.8e-48	-	-	-	S	-	-	-	Haemolysin XhlA
JAPHLIII_01049	3.93e-99	-	-	-	T	-	-	-	Universal stress protein family
JAPHLIII_01050	5.73e-316	pts14C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_01051	1.93e-210	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
JAPHLIII_01053	7.62e-97	-	-	-	-	-	-	-	-
JAPHLIII_01054	2.9e-139	-	-	-	-	-	-	-	-
JAPHLIII_01055	0.0	gdhA	1.4.1.4	-	E	ko:K00262	ko00220,ko00250,ko00910,ko01100,map00220,map00250,map00910,map01100	ko00000,ko00001,ko01000	Belongs to the Glu Leu Phe Val dehydrogenases family
JAPHLIII_01056	1.63e-281	pbpX	-	-	V	-	-	-	Beta-lactamase
JAPHLIII_01057	4.75e-267	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
JAPHLIII_01058	7.42e-202	rbn	-	-	S	ko:K07058	-	ko00000	Belongs to the UPF0761 family
JAPHLIII_01059	3.98e-169	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
JAPHLIII_01060	1.19e-258	glf	5.4.99.9	-	M	ko:K01854	ko00052,ko00520,map00052,map00520	ko00000,ko00001,ko01000	UDP-galactopyranose mutase
JAPHLIII_01062	2.46e-25	-	-	-	D	-	-	-	protein tyrosine kinase activity
JAPHLIII_01065	1.74e-110	cps3J	-	-	M	-	-	-	Domain of unknown function (DUF4422)
JAPHLIII_01066	8.1e-99	cps3A	-	-	S	ko:K07011	-	ko00000	Glycosyltransferase like family 2
JAPHLIII_01067	6.67e-23	yibD	-	GT2	M	ko:K19354	-	ko00000,ko01000,ko01003,ko01005	Glycosyltransferases involved in cell wall biogenesis
JAPHLIII_01068	3.84e-95	wefC	-	-	M	-	-	-	Stealth protein CR2, conserved region 2
JAPHLIII_01069	5.93e-109	-	-	-	P	ko:K19419	-	ko00000,ko02000	EpsG family
JAPHLIII_01070	1.39e-97	-	-	-	S	-	-	-	Glycosyltransferase like family 2
JAPHLIII_01071	1.92e-222	cps1C	-	-	S	ko:K03328	-	ko00000	Membrane protein involved in the export of O-antigen and teichoic acid
JAPHLIII_01072	4.83e-209	cps3D	-	-	-	-	-	-	-
JAPHLIII_01073	1.45e-145	cps3E	-	-	-	-	-	-	-
JAPHLIII_01074	1.41e-206	cps3F	-	-	-	-	-	-	-
JAPHLIII_01075	5.72e-262	cps3H	-	-	-	-	-	-	-
JAPHLIII_01076	2.31e-256	cps3I	-	-	G	-	-	-	Acyltransferase family
JAPHLIII_01077	2.94e-190	cps3J	-	-	M	-	-	-	Domain of unknown function (DUF4422)
JAPHLIII_01078	6.86e-175	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
JAPHLIII_01079	0.0	-	-	-	M	-	-	-	domain protein
JAPHLIII_01080	5.36e-97	-	-	-	K	-	-	-	helix_turn_helix multiple antibiotic resistance protein
JAPHLIII_01081	0.0	cps1C	-	-	S	ko:K03328	-	ko00000	Membrane protein involved in the export of O-antigen and teichoic acid
JAPHLIII_01082	1.38e-155	rfbP	-	-	M	ko:K13012,ko:K19428	-	ko00000,ko01000,ko01005	Bacterial sugar transferase
JAPHLIII_01083	9.02e-70	-	-	-	-	-	-	-	-
JAPHLIII_01084	1.04e-45	-	-	-	S	-	-	-	Protein of unknown function (DUF2922)
JAPHLIII_01085	1.95e-41	-	-	-	-	-	-	-	-
JAPHLIII_01086	1.35e-34	-	-	-	-	-	-	-	-
JAPHLIII_01087	6.87e-131	-	-	-	K	-	-	-	DNA-templated transcription, initiation
JAPHLIII_01088	1.9e-168	-	-	-	-	-	-	-	-
JAPHLIII_01089	1.01e-181	recX	-	-	S	ko:K03565	-	ko00000,ko03400	Regulatory protein RecX
JAPHLIII_01090	6.62e-138	ygaC	-	-	J	ko:K07586	-	ko00000	Belongs to the UPF0374 family
JAPHLIII_01091	4.09e-172	lytE	-	-	M	-	-	-	NlpC/P60 family
JAPHLIII_01092	8.01e-64	-	-	-	K	-	-	-	sequence-specific DNA binding
JAPHLIII_01093	7.17e-39	-	-	-	S	-	-	-	Antitoxin component of a toxin-antitoxin (TA) module
JAPHLIII_01094	1.67e-166	pbpX	-	-	V	-	-	-	Beta-lactamase
JAPHLIII_01095	7.3e-216	hdhL	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
JAPHLIII_01096	1.13e-257	yueF	-	-	S	-	-	-	AI-2E family transporter
JAPHLIII_01097	2.46e-93	tagD	2.7.7.39	-	IM	ko:K00980	ko00564,map00564	ko00000,ko00001,ko01000	Glycerol-3-phosphate cytidylyltransferase
JAPHLIII_01098	7.89e-290	gntP	-	-	EG	ko:K03299	-	ko00000,ko02000	Gluconate
JAPHLIII_01099	0.0	gntK	2.7.1.12	-	G	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko01000	Belongs to the FGGY kinase family
JAPHLIII_01100	3.36e-216	gntZ	1.1.1.343, 1.1.1.44	-	G	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Dehydrogenase
JAPHLIII_01101	0.0	gshR3	1.8.1.7	-	C	ko:K00383	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Glutathione reductase
JAPHLIII_01102	0.0	prfC	-	-	J	ko:K02837	-	ko00000,ko03012	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JAPHLIII_01103	0.0	-	-	-	-	-	-	-	-
JAPHLIII_01104	1.49e-252	-	-	-	M	-	-	-	MucBP domain
JAPHLIII_01105	1.36e-208	lysR5	-	-	K	-	-	-	LysR substrate binding domain
JAPHLIII_01106	1.01e-172	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
JAPHLIII_01107	3.85e-76	ywjH	-	-	S	-	-	-	Protein of unknown function (DUF1634)
JAPHLIII_01108	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
JAPHLIII_01109	3.44e-210	oppB	-	-	P	ko:K15581	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JAPHLIII_01110	3.59e-241	oppC	-	-	EP	ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JAPHLIII_01111	4.86e-258	oppD	-	-	P	ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
JAPHLIII_01112	5.67e-231	oppF	-	-	P	ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
JAPHLIII_01113	3.4e-85	-	-	-	K	-	-	-	Winged helix DNA-binding domain
JAPHLIII_01114	2.5e-132	-	-	-	L	-	-	-	Integrase
JAPHLIII_01115	0.0	clpE	-	-	O	ko:K03697	-	ko00000,ko03110	Belongs to the ClpA ClpB family
JAPHLIII_01116	5.6e-41	-	-	-	-	-	-	-	-
JAPHLIII_01117	1.24e-52	ptsH	-	-	G	ko:K11189	-	ko00000,ko02000	phosphocarrier protein HPR
JAPHLIII_01118	0.0	ptsI	2.7.3.9	-	G	ko:K08483	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JAPHLIII_01119	1.41e-285	pimB	2.4.1.337	GT4	M	ko:K19002	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
JAPHLIII_01120	2.04e-254	cpoA	2.4.1.208	GT4	M	ko:K13677,ko:K13678	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
JAPHLIII_01121	2.16e-241	mprF	-	-	I	ko:K07027	-	ko00000,ko02000	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JAPHLIII_01122	1.88e-291	dacA2	3.4.16.4	-	M	ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
JAPHLIII_01123	3.5e-292	araT	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
JAPHLIII_01124	1.56e-46	ykuJ	-	-	S	-	-	-	Protein of unknown function (DUF1797)
JAPHLIII_01125	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
JAPHLIII_01128	1.35e-55	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
JAPHLIII_01140	5.4e-118	-	2.4.2.7	-	F	ko:K00759	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000,ko04147	Phosphoribosyl transferase domain
JAPHLIII_01141	5.46e-238	-	-	-	P	ko:K06901	-	ko00000,ko02000	secondary active sulfate transmembrane transporter activity
JAPHLIII_01142	2.07e-123	-	-	-	-	-	-	-	-
JAPHLIII_01143	1.58e-122	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
JAPHLIII_01144	1.7e-199	prpA3	3.1.3.16	-	T	ko:K01090	-	ko00000,ko01000	Calcineurin-like phosphoesterase superfamily domain
JAPHLIII_01146	8.01e-294	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
JAPHLIII_01147	2.08e-239	hemH	4.99.1.1, 4.99.1.9	-	H	ko:K01772	ko00860,ko01100,ko01110,map00860,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the ferrous insertion into protoporphyrin IX
JAPHLIII_01148	0.0	ybgF	-	-	E	ko:K02205,ko:K03293,ko:K16235,ko:K16236	-	ko00000,ko02000	amino acid
JAPHLIII_01149	3.91e-216	mmuM	2.1.1.10	-	H	ko:K00547	ko00270,ko01100,ko01110,map00270,map01100,map01110	ko00000,ko00001,ko01000	homocysteine S-methyltransferase
JAPHLIII_01150	0.0	-	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
JAPHLIII_01151	5.79e-158	-	-	-	-	-	-	-	-
JAPHLIII_01152	2.78e-273	metK	2.5.1.6	-	H	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JAPHLIII_01153	0.0	mdr	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_01154	3.22e-301	-	-	-	N	-	-	-	Cell shape-determining protein MreB
JAPHLIII_01155	0.0	-	-	-	S	-	-	-	Pfam Methyltransferase
JAPHLIII_01156	0.0	tagE2	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
JAPHLIII_01157	0.0	tagE3	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
JAPHLIII_01158	9.32e-40	-	-	-	-	-	-	-	-
JAPHLIII_01159	2.05e-120	mraW1	-	-	J	-	-	-	Putative rRNA methylase
JAPHLIII_01160	8.45e-160	yodM	3.6.1.27	-	I	ko:K19302	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	Acid phosphatase homologues
JAPHLIII_01161	0.0	leuS	6.1.1.4	-	J	ko:K01869	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Belongs to the class-I aminoacyl-tRNA synthetase family
JAPHLIII_01162	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
JAPHLIII_01163	5.04e-176	rsuA	5.4.99.19	-	J	ko:K06183	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
JAPHLIII_01164	1.83e-194	nnrD	4.2.1.136, 5.1.99.6	-	H	ko:K17758,ko:K17759	-	ko00000,ko01000	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JAPHLIII_01165	0.0	pepV	3.5.1.18	-	E	ko:K01270,ko:K01274,ko:K01439	ko00300,ko00480,ko01100,ko01120,ko01230,map00300,map00480,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	dipeptidase PepV
JAPHLIII_01166	2.16e-109	-	-	-	T	-	-	-	Belongs to the universal stress protein A family
JAPHLIII_01167	4.15e-258	ugpC	3.6.3.20	-	E	ko:K05816,ko:K10112	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Belongs to the ABC transporter superfamily
JAPHLIII_01168	4.59e-221	ugpA	-	-	U	ko:K02025,ko:K05814	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
JAPHLIII_01169	3.05e-193	ugpE	-	-	G	ko:K05815	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_01170	0.0	ugpB	-	-	G	ko:K05813	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
JAPHLIII_01171	2.73e-122	glpQ1	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
JAPHLIII_01172	2.07e-155	dgk2	-	-	F	-	-	-	deoxynucleoside kinase
JAPHLIII_01173	3.55e-72	mscL	-	-	M	ko:K03282	-	ko00000,ko02000	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
JAPHLIII_01174	7.61e-316	XK27_06930	-	-	V	ko:K01421	-	ko00000	domain protein
JAPHLIII_01176	1.16e-160	-	-	-	V	ko:K01992	-	ko00000,ko00002,ko02000	Transport permease protein
JAPHLIII_01177	3.06e-201	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_01178	2.57e-226	-	-	-	K	ko:K01990	-	ko00000,ko00002,ko02000	LytTr DNA-binding domain
JAPHLIII_01179	6.96e-198	mrsA1	1.8.4.11	-	O	ko:K07304	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JAPHLIII_01180	5.2e-85	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
JAPHLIII_01181	4.69e-151	-	-	-	GM	-	-	-	NAD(P)H-binding
JAPHLIII_01182	6.31e-203	ydeD	-	-	EG	-	-	-	COG0697 Permeases of the drug metabolite transporter (DMT) superfamily
JAPHLIII_01183	3.27e-190	-	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
JAPHLIII_01184	7.83e-140	-	-	-	-	-	-	-	-
JAPHLIII_01185	1.25e-284	pltK	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
JAPHLIII_01186	9.01e-179	agrA	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
JAPHLIII_01187	5.37e-74	-	-	-	-	-	-	-	-
JAPHLIII_01188	4.56e-78	-	-	-	-	-	-	-	-
JAPHLIII_01189	4.31e-146	XK27_07085	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_01190	2.2e-111	ohrR	-	-	K	ko:K18906	-	ko00000,ko00002,ko01504,ko03000	helix_turn_helix multiple antibiotic resistance protein
JAPHLIII_01191	8.82e-119	-	-	-	-	-	-	-	-
JAPHLIII_01192	7.12e-62	-	-	-	-	-	-	-	-
JAPHLIII_01193	0.0	uvrA2	-	-	L	-	-	-	ABC transporter
JAPHLIII_01196	9.76e-93	-	-	-	-	-	-	-	-
JAPHLIII_01197	9.03e-16	-	-	-	-	-	-	-	-
JAPHLIII_01198	3.89e-237	-	-	-	-	-	-	-	-
JAPHLIII_01199	4.91e-117	gtcA1	-	-	S	-	-	-	Teichoic acid glycosylation protein
JAPHLIII_01200	8.01e-77	-	-	-	S	-	-	-	Protein of unknown function (DUF1516)
JAPHLIII_01201	0.0	yitJ	1.5.1.20, 2.1.1.10	-	E	ko:K00297,ko:K00547	ko00270,ko00670,ko00720,ko01100,ko01110,ko01120,ko01200,ko01523,map00270,map00670,map00720,map01100,map01110,map01120,map01200,map01523	ko00000,ko00001,ko00002,ko01000	catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine
JAPHLIII_01202	0.0	metE	2.1.1.14	-	E	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JAPHLIII_01203	0.0	-	-	-	S	-	-	-	Protein conserved in bacteria
JAPHLIII_01204	1.8e-292	sat	2.7.7.4	-	H	ko:K00958	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130	ko00000,ko00001,ko00002,ko01000	the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms
JAPHLIII_01205	2.24e-146	cysC	2.7.1.25	-	F	ko:K00860	ko00230,ko00920,ko01100,ko01120,map00230,map00920,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Catalyzes the synthesis of activated sulfate
JAPHLIII_01206	6.91e-234	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHHA1 domain
JAPHLIII_01207	0.0	astA	2.8.2.22	-	M	ko:K01023	-	ko00000,ko01000	Arylsulfotransferase Ig-like domain
JAPHLIII_01208	0.0	-	-	-	P	-	-	-	Sodium:sulfate symporter transmembrane region
JAPHLIII_01209	2.69e-316	dinF	-	-	V	-	-	-	MatE
JAPHLIII_01210	1.79e-42	-	-	-	-	-	-	-	-
JAPHLIII_01213	7.02e-103	yybD	-	-	S	ko:K02348	-	ko00000	Acetyltransferase (GNAT) domain
JAPHLIII_01214	0.0	argS	6.1.1.19	-	J	ko:K01887	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Arginyl-tRNA synthetase
JAPHLIII_01215	2.91e-109	-	-	-	-	-	-	-	-
JAPHLIII_01216	0.0	yhcA	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	MacB-like periplasmic core domain
JAPHLIII_01217	6.25e-138	-	-	-	-	-	-	-	-
JAPHLIII_01218	0.0	celR	-	-	K	-	-	-	PRD domain
JAPHLIII_01219	1.34e-104	-	-	-	S	-	-	-	Domain of unknown function (DUF3284)
JAPHLIII_01220	2.37e-68	lacF	2.7.1.196, 2.7.1.205, 2.7.1.207	-	G	ko:K02759,ko:K02786	ko00052,ko00500,ko01100,ko02060,map00052,map00500,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIA subunit
JAPHLIII_01221	4.9e-64	-	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
JAPHLIII_01222	1.02e-285	-	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_01223	0.0	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_01224	5.63e-192	-	-	-	EGP	ko:K08218	ko01501,map01501	ko00000,ko00001,ko00002,ko02000	Major facilitator Superfamily
JAPHLIII_01225	1.55e-70	-	-	-	EGP	ko:K08218	ko01501,map01501	ko00000,ko00001,ko00002,ko02000	Major facilitator Superfamily
JAPHLIII_01226	1.72e-148	yciB	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
JAPHLIII_01227	1.65e-46	dltC2	6.1.1.13	-	J	ko:K14188	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
JAPHLIII_01228	0.0	ydfD	-	-	K	ko:K18907	-	ko00000,ko00002,ko01504,ko03000	Alanine-glyoxylate amino-transferase
JAPHLIII_01229	3.29e-132	argO	-	-	S	ko:K06895	-	ko00000,ko02000	LysE type translocator
JAPHLIII_01230	5.58e-271	arcT	-	-	E	-	-	-	Aminotransferase
JAPHLIII_01231	2.07e-102	argR	-	-	K	ko:K03402	-	ko00000,ko03000	Regulates arginine biosynthesis genes
JAPHLIII_01232	2.43e-18	-	-	-	-	-	-	-	-
JAPHLIII_01233	0.0	pbp2A	2.4.1.129, 3.4.16.4	GT51	M	ko:K12555	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein
JAPHLIII_01234	9.94e-71	yheA	-	-	S	-	-	-	Belongs to the UPF0342 family
JAPHLIII_01235	1.49e-294	yhaO	-	-	L	ko:K03547	-	ko00000,ko03400	Ser Thr phosphatase family protein
JAPHLIII_01236	0.0	yhaN	-	-	L	-	-	-	AAA domain
JAPHLIII_01237	2.08e-240	yhaM	-	-	S	ko:K03698	-	ko00000,ko01000,ko03019	Metal dependent phosphohydrolases with conserved 'HD' motif.
JAPHLIII_01238	5.69e-277	-	-	-	-	-	-	-	-
JAPHLIII_01239	3.16e-116	-	-	-	M	-	-	-	Peptidase family S41
JAPHLIII_01240	1.06e-72	-	-	-	M	-	-	-	Peptidase family S41
JAPHLIII_01241	6.59e-227	-	-	-	K	-	-	-	LysR substrate binding domain
JAPHLIII_01242	9.9e-144	-	-	-	S	-	-	-	NADPH-dependent FMN reductase
JAPHLIII_01243	0.0	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
JAPHLIII_01244	4.43e-129	-	-	-	-	-	-	-	-
JAPHLIII_01245	1.17e-100	-	2.4.2.6	-	F	ko:K08728	ko00240,map00240	ko00000,ko00001,ko01000	Nucleoside 2-deoxyribosyltransferase
JAPHLIII_01246	1.78e-72	-	-	-	M	-	-	-	domain protein
JAPHLIII_01247	1.29e-167	-	-	-	M	-	-	-	domain protein
JAPHLIII_01248	7.13e-59	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
JAPHLIII_01249	6.28e-69	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
JAPHLIII_01250	1.81e-64	-	2.7.7.49	-	L	ko:K00986	-	ko00000,ko01000	PFAM RNA-directed DNA polymerase (Reverse transcriptase)
JAPHLIII_01251	0.0	-	-	-	P	-	-	-	Cation transporter/ATPase, N-terminus
JAPHLIII_01252	4.09e-253	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
JAPHLIII_01253	0.0	-	-	-	L	-	-	-	ATPase domain of DNA mismatch repair MUTS family
JAPHLIII_01254	0.0	-	-	-	L	-	-	-	MutS domain V
JAPHLIII_01255	1.57e-233	ykoT	-	-	M	-	-	-	Glycosyl transferase family 2
JAPHLIII_01256	0.0	-	-	-	M	-	-	-	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JAPHLIII_01257	2.24e-87	-	-	-	S	-	-	-	NUDIX domain
JAPHLIII_01258	0.0	-	-	-	S	-	-	-	membrane
JAPHLIII_01259	4.26e-218	ribD	1.1.1.193, 3.5.4.26	-	H	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	ko00000,ko00001,ko00002,ko01000	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JAPHLIII_01260	8.71e-111	ribE	2.5.1.9	-	H	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Riboflavin synthase
JAPHLIII_01261	2.08e-284	ribA	3.5.4.25, 4.1.99.12	-	H	ko:K02858,ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate
JAPHLIII_01262	1.23e-106	ribH	2.5.1.78	-	H	ko:K00794	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin
JAPHLIII_01263	5.21e-137	-	-	-	S	ko:K09962	-	ko00000	Nucleotidyltransferase
JAPHLIII_01264	3.39e-138	-	-	-	-	-	-	-	-
JAPHLIII_01265	2.71e-150	crp2	-	-	K	ko:K10914,ko:K21562	ko02020,ko02024,ko02025,ko02026,ko05111,map02020,map02024,map02025,map02026,map05111	ko00000,ko00001,ko03000	helix_turn_helix, cAMP Regulatory protein
JAPHLIII_01266	4.89e-146	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_01267	5.19e-309	npr	1.11.1.1	-	C	ko:K05910	-	ko00000,ko01000	NADH oxidase
JAPHLIII_01268	0.0	-	-	-	-	-	-	-	-
JAPHLIII_01269	4.75e-80	-	-	-	-	-	-	-	-
JAPHLIII_01270	3.36e-248	-	-	-	S	-	-	-	Fn3-like domain
JAPHLIII_01271	5.69e-138	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_01272	6.2e-123	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_01273	1.09e-196	prsA	5.2.1.8	-	M	ko:K01802,ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
JAPHLIII_01274	6.76e-73	-	-	-	-	-	-	-	-
JAPHLIII_01275	3.6e-106	hit	-	-	FG	ko:K02503	-	ko00000,ko04147	histidine triad
JAPHLIII_01276	1.1e-174	ecsA	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_01277	9.53e-284	ecsB	-	-	U	ko:K01992	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_01278	7.24e-197	ytmP	-	-	M	-	-	-	Choline/ethanolamine kinase
JAPHLIII_01279	4.7e-156	trmB	2.1.1.33	-	J	ko:K03439	-	ko00000,ko01000,ko03016	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
JAPHLIII_01280	2.94e-71	ytzB	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
JAPHLIII_01281	1.45e-145	ytpR	-	-	J	ko:K06878	-	ko00000	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
JAPHLIII_01282	0.0	sftA	-	-	D	ko:K03466	-	ko00000,ko03036	Belongs to the FtsK SpoIIIE SftA family
JAPHLIII_01283	0.0	murC	6.3.2.8	-	M	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Belongs to the MurCDEF family
JAPHLIII_01284	3.04e-29	-	-	-	S	-	-	-	Virus attachment protein p12 family
JAPHLIII_01285	0.0	feoB	-	-	P	ko:K04759	-	ko00000,ko02000	transporter of a GTP-driven Fe(2 ) uptake system
JAPHLIII_01286	2.87e-47	feoA	-	-	P	ko:K04758	-	ko00000,ko02000	FeoA domain
JAPHLIII_01287	1.1e-184	sufC	-	-	O	ko:K09013	-	ko00000,ko02000	FeS assembly ATPase SufC
JAPHLIII_01288	5.21e-311	sufD	-	-	O	ko:K07033,ko:K09015	-	ko00000	FeS assembly protein SufD
JAPHLIII_01289	5.93e-298	sufS	2.8.1.7, 4.4.1.16	-	E	ko:K11717	ko00450,ko01100,map00450,map01100	ko00000,ko00001,ko01000	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JAPHLIII_01290	7.76e-108	nifU	-	-	C	ko:K04488	-	ko00000	SUF system FeS assembly protein, NifU family
JAPHLIII_01291	0.0	sufB	-	-	O	ko:K07033,ko:K09014	-	ko00000	assembly protein SufB
JAPHLIII_01292	4.07e-60	-	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
JAPHLIII_01293	1.04e-141	-	-	-	K	ko:K20480	ko02024,map02024	ko00000,ko00001,ko03000	Helix-turn-helix
JAPHLIII_01294	8.51e-155	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
JAPHLIII_01295	0.0	polA	2.7.7.7	-	L	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	ko00000,ko00001,ko01000,ko03032,ko03400	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JAPHLIII_01296	1.52e-200	fpg	3.2.2.23, 4.2.99.18	-	L	ko:K10563	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
JAPHLIII_01297	2.25e-132	coaE	2.7.1.24	-	F	ko:K00859	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JAPHLIII_01298	1.58e-117	nrdR	-	-	K	ko:K07738	-	ko00000,ko03000	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JAPHLIII_01299	0.0	dnaB	-	-	L	ko:K03346	-	ko00000,ko03032	replication initiation and membrane attachment
JAPHLIII_01300	6.05e-221	dnaI	-	-	L	ko:K11144	-	ko00000,ko03032	Primosomal protein DnaI
JAPHLIII_01301	0.0	thrS	6.1.1.3	-	J	ko:K01868	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JAPHLIII_01302	2.37e-109	infC	-	-	J	ko:K02520	-	ko00000,ko03012,ko03029	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JAPHLIII_01303	6.92e-37	rpmI	-	-	J	ko:K02916	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL35 family
JAPHLIII_01304	6.88e-73	rplT	-	-	J	ko:K02887	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JAPHLIII_01305	9.27e-73	-	-	-	-	-	-	-	-
JAPHLIII_01306	1.16e-305	-	-	-	L	ko:K07478	-	ko00000	AAA C-terminal domain
JAPHLIII_01307	8.28e-251	qor	1.1.1.1, 1.6.5.5	-	C	ko:K00001,ko:K00344	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily
JAPHLIII_01308	1.64e-83	ydeP	-	-	K	-	-	-	Transcriptional regulator, HxlR family
JAPHLIII_01309	2.79e-174	racD	5.1.1.13	-	G	ko:K01779	ko00250,ko01054,map00250,map01054	ko00000,ko00001,ko01000	Belongs to the aspartate glutamate racemases family
JAPHLIII_01310	0.0	yijG	-	GT2	M	ko:K11936	ko02026,map02026	ko00000,ko00001,ko01000,ko01003,ko02000	Glycosyl transferase
JAPHLIII_01311	6.32e-114	-	-	-	-	-	-	-	-
JAPHLIII_01312	5.7e-127	yqeG	-	-	S	ko:K07015	-	ko00000	HAD phosphatase, family IIIA
JAPHLIII_01313	1.33e-276	yqeH	-	-	S	ko:K06948	-	ko00000,ko03009	Ribosome biogenesis GTPase YqeH
JAPHLIII_01314	2.19e-67	yhbY	-	-	J	ko:K07574	-	ko00000,ko03009	RNA-binding protein
JAPHLIII_01315	4.19e-153	nadD	2.7.7.18	-	H	ko:K00969	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JAPHLIII_01316	9.92e-149	yqeK	-	-	H	-	-	-	Hydrolase, HD family
JAPHLIII_01317	1.06e-76	rsfS	-	-	J	ko:K09710	-	ko00000,ko03009	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
JAPHLIII_01318	3.3e-180	yqeM	-	-	Q	-	-	-	Methyltransferase
JAPHLIII_01319	2.05e-278	ylbM	-	-	S	-	-	-	Belongs to the UPF0348 family
JAPHLIII_01320	3.66e-127	ylbN	-	-	S	ko:K07040	-	ko00000	Uncharacterized ACR, COG1399
JAPHLIII_01321	3.06e-124	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
JAPHLIII_01322	6.29e-223	yeaB	-	-	P	-	-	-	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JAPHLIII_01323	0.0	gnd	1.1.1.343, 1.1.1.44	-	H	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JAPHLIII_01324	7.66e-312	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
JAPHLIII_01325	1.38e-155	csrR	-	-	K	-	-	-	response regulator
JAPHLIII_01326	0.0	arlS	2.7.13.3	-	T	ko:K18940	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
JAPHLIII_01327	1.93e-218	ubiA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	1,4-dihydroxy-2-naphthoate
JAPHLIII_01328	0.0	sbcC	-	-	L	ko:K03546	-	ko00000,ko03400	Putative exonuclease SbcCD, C subunit
JAPHLIII_01329	5.55e-288	sbcD	-	-	L	ko:K03547	-	ko00000,ko03400	SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity
JAPHLIII_01330	1.77e-122	-	-	-	S	-	-	-	SdpI/YhfL protein family
JAPHLIII_01331	1.4e-208	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
JAPHLIII_01332	2.36e-60	acyP	3.6.1.7	-	C	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	ko00000,ko00001,ko01000	Belongs to the acylphosphatase family
JAPHLIII_01333	6.34e-179	spoU	-	-	J	ko:K03437	-	ko00000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JAPHLIII_01334	1.72e-120	XK27_09705	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
JAPHLIII_01335	1.09e-83	yodB	-	-	K	-	-	-	Transcriptional regulator, HxlR family
JAPHLIII_01336	6.88e-257	pheS	6.1.1.20	-	J	ko:K01889	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JAPHLIII_01337	0.0	pheT	6.1.1.20	-	J	ko:K01890	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
JAPHLIII_01338	6.11e-249	mltG	-	-	S	ko:K07082	-	ko00000	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JAPHLIII_01339	7.5e-146	udk	2.7.1.48	-	F	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Cytidine monophosphokinase
JAPHLIII_01340	1.09e-105	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
JAPHLIII_01341	7.98e-145	-	-	-	S	-	-	-	membrane
JAPHLIII_01342	5.72e-99	-	-	-	K	-	-	-	LytTr DNA-binding domain
JAPHLIII_01343	6.12e-72	yneR	-	-	S	-	-	-	Belongs to the HesB IscA family
JAPHLIII_01344	0.0	-	-	-	S	-	-	-	membrane
JAPHLIII_01345	0.0	pbp2b	-	-	M	ko:K00687,ko:K12553,ko:K21465,ko:K21466	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
JAPHLIII_01346	5.33e-30	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
JAPHLIII_01347	9.29e-132	fthC	6.3.3.2	-	H	ko:K01934	ko00670,ko01100,map00670,map01100	ko00000,ko00001,ko01000	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JAPHLIII_01348	3.52e-153	gluP	3.4.21.105	-	S	ko:K19225	-	ko00000,ko01000,ko01002	Peptidase, S54 family
JAPHLIII_01349	6.33e-46	yqgQ	-	-	S	-	-	-	Bacterial protein of unknown function (DUF910)
JAPHLIII_01350	6.12e-230	glcK	2.7.1.2	-	G	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Glucokinase
JAPHLIII_01351	1.28e-138	pepE	3.4.13.21	-	E	ko:K05995	-	ko00000,ko01000,ko01002	Belongs to the peptidase S51 family
JAPHLIII_01352	1.15e-89	yqhL	-	-	P	-	-	-	Rhodanese-like protein
JAPHLIII_01353	1.44e-31	WQ51_02665	-	-	S	-	-	-	Protein of unknown function (DUF3042)
JAPHLIII_01354	2.23e-178	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	phosphodiesterase
JAPHLIII_01355	3.12e-223	miaA	2.5.1.75	-	F	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	ko00000,ko00001,ko01000,ko01006,ko03016	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JAPHLIII_01356	7.79e-85	glnR	-	-	K	ko:K03713,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000,ko03000	Transcriptional regulator
JAPHLIII_01357	0.0	glnA	6.3.1.2	-	E	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	ko00000,ko00001,ko01000,ko04147	glutamine synthetase
JAPHLIII_01358	1.77e-205	-	-	-	-	-	-	-	-
JAPHLIII_01359	1.34e-232	-	-	-	-	-	-	-	-
JAPHLIII_01360	3.55e-127	-	-	-	S	-	-	-	Protein conserved in bacteria
JAPHLIII_01361	5.37e-74	-	-	-	-	-	-	-	-
JAPHLIII_01362	2.97e-41	-	-	-	-	-	-	-	-
JAPHLIII_01363	1.01e-154	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902 family
JAPHLIII_01366	9.81e-27	-	-	-	-	-	-	-	-
JAPHLIII_01367	8.15e-125	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_01368	1.55e-66	rplU	-	-	J	ko:K02888	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to 23S rRNA in the presence of protein L20
JAPHLIII_01369	7.97e-71	ysxB	-	-	J	ko:K07584	-	ko00000	Cysteine protease Prp
JAPHLIII_01370	2.33e-61	rpmA	-	-	J	ko:K02899	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL27 family
JAPHLIII_01371	6.04e-249	pepP	3.4.11.9, 3.4.13.9	-	E	ko:K01262,ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
JAPHLIII_01372	1.43e-129	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JAPHLIII_01373	1.7e-96	WQ51_04310	-	-	S	ko:K10947	-	ko00000,ko03000	Asp23 family, cell envelope-related function
JAPHLIII_01374	2.82e-91	nusB	-	-	K	ko:K03625	-	ko00000,ko03009,ko03021	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JAPHLIII_01375	4.82e-194	folD	1.5.1.5, 3.5.4.9	-	F	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JAPHLIII_01376	2.81e-313	xseA	3.1.11.6	-	L	ko:K03601	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
JAPHLIII_01377	7.55e-44	xseB	3.1.11.6	-	L	ko:K03602	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
JAPHLIII_01378	6.68e-206	ispA	2.5.1.1, 2.5.1.10, 2.5.1.29	-	H	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01006	Belongs to the FPP GGPP synthase family
JAPHLIII_01379	4.49e-192	rrmJ	2.1.1.226, 2.1.1.227	-	J	ko:K06442	-	ko00000,ko01000,ko03009	Ribosomal RNA large subunit methyltransferase J
JAPHLIII_01380	5.28e-100	argR2	-	-	K	ko:K03402	-	ko00000,ko03000	Regulates arginine biosynthesis genes
JAPHLIII_01381	0.0	recN	-	-	L	ko:K03631	-	ko00000,ko03400	May be involved in recombinational repair of damaged DNA
JAPHLIII_01382	4.51e-284	opuCA	-	-	E	ko:K05847	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_01383	7.11e-135	opuCB	-	-	E	ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_01384	3.8e-224	opuCC	-	-	M	ko:K05845	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Periplasmic glycine betaine choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)
JAPHLIII_01385	1.36e-136	opuCD	-	-	P	ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
JAPHLIII_01386	8.28e-73	-	-	-	-	-	-	-	-
JAPHLIII_01387	6.96e-145	gmk	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Essential for recycling GMP and indirectly, cGMP
JAPHLIII_01388	3.93e-41	rpoZ	2.7.7.6	-	K	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
JAPHLIII_01389	5.04e-278	coaBC	4.1.1.36, 6.3.2.5	-	H	ko:K01598,ko:K13038	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JAPHLIII_01390	0.0	priA	-	-	L	ko:K04066	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JAPHLIII_01391	5.2e-225	fmt	2.1.2.9	-	J	ko:K00604	ko00670,ko00970,map00670,map00970	ko00000,ko00001,ko01000	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JAPHLIII_01392	0.0	sun	2.1.1.176	-	J	ko:K03500	-	ko00000,ko01000,ko03009	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JAPHLIII_01393	1.62e-173	stp	3.1.3.16	-	T	ko:K20074	-	ko00000,ko01000,ko01009	phosphatase
JAPHLIII_01394	0.0	prkC	2.7.11.1	-	KLT	ko:K08884,ko:K12132	-	ko00000,ko01000,ko01001	serine threonine protein kinase
JAPHLIII_01395	9.9e-209	rsgA	3.1.3.100	-	S	ko:K06949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
JAPHLIII_01396	3.16e-151	rpe	5.1.3.1	-	G	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ribulose-phosphate 3-epimerase family
JAPHLIII_01397	1.24e-158	thiN	2.7.6.2	-	H	ko:K00949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000	thiamine pyrophosphokinase
JAPHLIII_01398	1.61e-36	rpmB	-	-	J	ko:K02902	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL28 family
JAPHLIII_01399	7.09e-76	yloU	-	-	S	-	-	-	Asp23 family, cell envelope-related function
JAPHLIII_01400	0.0	yloV	-	-	S	ko:K07030	-	ko00000	DAK2 domain fusion protein YloV
JAPHLIII_01401	0.0	recG	3.6.4.12	-	L	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JAPHLIII_01402	2.17e-244	plsX	2.3.1.15	-	I	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
JAPHLIII_01403	3.33e-47	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JAPHLIII_01404	4.49e-167	rnc	3.1.26.3	-	J	ko:K03685	ko03008,ko05205,map03008,map05205	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
JAPHLIII_01405	0.0	smc	-	-	D	ko:K03529	-	ko00000,ko03036	Required for chromosome condensation and partitioning
JAPHLIII_01406	2.85e-293	ftsY	-	-	U	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
JAPHLIII_01407	1.46e-77	ylxM	-	-	S	ko:K09787	-	ko00000	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
JAPHLIII_01408	7.69e-300	ffh	3.6.5.4	-	U	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko01000,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JAPHLIII_01409	1.6e-58	rpsP	-	-	J	ko:K02959	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bS16 family
JAPHLIII_01410	9.99e-53	ylqC	-	-	S	ko:K06960	-	ko00000	Belongs to the UPF0109 family
JAPHLIII_01411	2.24e-123	rimM	-	-	J	ko:K02860	-	ko00000,ko03009	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JAPHLIII_01412	1.57e-179	trmD	2.1.1.228	-	J	ko:K00554	-	ko00000,ko01000,ko03016	Belongs to the RNA methyltransferase TrmD family
JAPHLIII_01413	3.15e-78	rplS	-	-	J	ko:K02884	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
JAPHLIII_01414	6.21e-68	-	-	-	-	-	-	-	-
JAPHLIII_01415	0.0	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
JAPHLIII_01416	9.06e-112	-	-	-	-	-	-	-	-
JAPHLIII_01417	2.05e-179	ecsA_2	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	AAA domain, putative AbiEii toxin, Type IV TA system
JAPHLIII_01418	0.0	XK27_00765	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
JAPHLIII_01420	0.0	trpE	4.1.3.27	-	EH	ko:K01657	ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025	ko00000,ko00001,ko00002,ko01000	Anthranilate synthase component I, N terminal region
JAPHLIII_01421	3.29e-134	trpG	4.1.3.27	-	EH	ko:K01658	ko00400,ko00405,ko01100,ko01110,ko01130,ko01230,ko02024,ko02025,map00400,map00405,map01100,map01110,map01130,map01230,map02024,map02025	ko00000,ko00001,ko00002,ko01000	Peptidase C26
JAPHLIII_01422	2.45e-225	trpD	2.4.2.18, 4.1.3.27	-	F	ko:K00766,ko:K13497	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JAPHLIII_01423	3.66e-160	trpC	4.1.1.48, 5.3.1.24	-	E	ko:K01609,ko:K13498	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TrpC family
JAPHLIII_01424	3.17e-142	trpF	5.3.1.24	-	E	ko:K01817	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TrpF family
JAPHLIII_01425	1.79e-287	trpB	4.2.1.20, 5.3.1.24	-	E	ko:K01696,ko:K01817	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
JAPHLIII_01426	4.82e-183	trpA	4.2.1.20	-	E	ko:K01695	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
JAPHLIII_01427	1.02e-126	entB	-	-	Q	-	-	-	Isochorismatase family
JAPHLIII_01428	3.53e-227	-	1.6.5.5	-	C	ko:K00344	-	ko00000,ko01000	Zinc-binding dehydrogenase
JAPHLIII_01429	9.38e-253	adhB	1.1.1.1	-	E	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	alcohol dehydrogenase
JAPHLIII_01430	1.49e-77	-	-	-	S	-	-	-	Protein of unknown function (DUF1648)
JAPHLIII_01432	3.96e-185	yneD	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
JAPHLIII_01433	8.02e-230	yneE	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_01434	8.55e-99	fabZ	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
JAPHLIII_01435	1.62e-229	fabH	2.3.1.180	-	I	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JAPHLIII_01436	6.16e-48	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JAPHLIII_01437	2.97e-216	fabD	2.3.1.39	-	I	ko:K00645,ko:K15327,ko:K15329	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004,ko01008	Malonyl CoA-acyl carrier protein transacylase
JAPHLIII_01438	1.26e-162	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	reductase
JAPHLIII_01439	1.54e-289	fabF	2.3.1.179	-	I	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
JAPHLIII_01440	2.14e-95	accB	-	-	I	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
JAPHLIII_01441	1.71e-91	fabZ2	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	FabA-like domain
JAPHLIII_01442	0.0	accC	6.3.4.14, 6.4.1.2	-	I	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Acetyl-CoA carboxylase biotin carboxylase subunit
JAPHLIII_01443	6.43e-203	accD	2.1.3.15, 6.4.1.2	-	I	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JAPHLIII_01444	4.82e-179	accA	2.1.3.15, 6.4.1.2	-	I	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	alpha subunit
JAPHLIII_01445	2.29e-175	fabI	1.3.1.10, 1.3.1.9	-	I	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl- acyl-carrier-protein reductase NADH
JAPHLIII_01446	1.75e-129	-	-	-	H	ko:K06133	ko00770,map00770	ko00000,ko00001,ko01000	Belongs to the P-Pant transferase superfamily
JAPHLIII_01447	3.64e-162	-	-	-	S	ko:K07150	-	ko00000	Protein of unknown function (DUF554)
JAPHLIII_01448	4.35e-206	-	-	-	K	-	-	-	LysR substrate binding domain
JAPHLIII_01449	4.94e-114	ykhA	-	-	I	-	-	-	Thioesterase superfamily
JAPHLIII_01450	2.66e-247	rsgA_2	3.1.3.100	-	S	ko:K06949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
JAPHLIII_01451	8.6e-121	-	-	-	K	-	-	-	transcriptional regulator
JAPHLIII_01452	0.0	-	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_01453	1.14e-193	-	-	-	O	-	-	-	Band 7 protein
JAPHLIII_01454	1.48e-71	-	-	-	-	-	-	-	-
JAPHLIII_01455	2.02e-39	-	-	-	-	-	-	-	-
JAPHLIII_01456	1.69e-276	cfa	2.1.1.79	-	M	ko:K00574	-	ko00000,ko01000	cyclopropane-fatty-acyl-phospholipid synthase
JAPHLIII_01457	9.96e-147	-	1.14.99.53	AA10	S	ko:K21713	-	ko00000,ko01000	Lytic polysaccharide mono-oxygenase, cellulose-degrading
JAPHLIII_01458	6.15e-62	ycnE	-	-	S	-	-	-	Antibiotic biosynthesis monooxygenase
JAPHLIII_01459	2.05e-55	-	-	-	-	-	-	-	-
JAPHLIII_01460	6.05e-108	tspO	-	-	T	ko:K05770	ko04080,ko04214,ko04979,ko05166,map04080,map04214,map04979,map05166	ko00000,ko00001,ko02000	TspO/MBR family
JAPHLIII_01461	5.28e-100	-	-	-	T	-	-	-	Belongs to the universal stress protein A family
JAPHLIII_01462	3.92e-87	-	-	-	S	-	-	-	Protein of unknown function (DUF805)
JAPHLIII_01463	7.27e-211	-	-	-	I	-	-	-	Diacylglycerol kinase catalytic domain
JAPHLIII_01464	1.51e-48	-	-	-	-	-	-	-	-
JAPHLIII_01465	5.79e-21	-	-	-	-	-	-	-	-
JAPHLIII_01466	2.22e-55	-	-	-	S	-	-	-	transglycosylase associated protein
JAPHLIII_01467	4e-40	-	-	-	S	-	-	-	CsbD-like
JAPHLIII_01468	1.06e-53	-	-	-	-	-	-	-	-
JAPHLIII_01469	0.0	pepD4	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
JAPHLIII_01470	4.87e-37	dmpI	5.3.2.6	-	G	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Belongs to the 4-oxalocrotonate tautomerase family
JAPHLIII_01471	0.0	lysA	4.1.1.20	-	E	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
JAPHLIII_01472	1.04e-218	-	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	UbiA prenyltransferase family
JAPHLIII_01473	5.03e-182	-	-	-	U	ko:K10716	-	ko00000,ko02000	Ion channel
JAPHLIII_01474	1.25e-66	-	-	-	-	-	-	-	-
JAPHLIII_01475	3.23e-58	-	-	-	-	-	-	-	-
JAPHLIII_01476	0.0	gabT	2.6.1.19, 5.1.1.21	-	E	ko:K00823,ko:K20708	ko00250,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00410,map00640,map00650,map01100,map01120	ko00000,ko00001,ko00002,ko01000,ko01007	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JAPHLIII_01477	0.0	-	-	-	E	ko:K03294	-	ko00000	Amino Acid
JAPHLIII_01478	3.86e-192	yitU	3.1.3.104	-	S	ko:K21064	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
JAPHLIII_01479	0.0	rsmF	-	-	J	-	-	-	NOL1 NOP2 sun family protein
JAPHLIII_01480	1.7e-150	-	-	-	S	-	-	-	Domain of unknown function (DUF4767)
JAPHLIII_01481	0.0	malT	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
JAPHLIII_01482	0.0	mapA	2.4.1.8	GH65	G	ko:K00691	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	hydrolase, family 65, central catalytic
JAPHLIII_01483	9.62e-247	galM2	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of alpha and beta anomers of maltose
JAPHLIII_01484	1.01e-249	fni	5.3.3.2	-	C	ko:K01823	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
JAPHLIII_01485	1.03e-261	mvaK2	2.7.4.2	-	I	ko:K00938	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	phosphomevalonate kinase
JAPHLIII_01486	1.1e-230	mvaD	4.1.1.33	-	I	ko:K01597	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	diphosphomevalonate decarboxylase
JAPHLIII_01487	1.48e-217	mvk	2.7.1.36	-	I	ko:K00869	ko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146	ko00000,ko00001,ko00002,ko01000	mevalonate kinase
JAPHLIII_01488	0.0	dinG	3.6.4.12	-	L	ko:K03722	-	ko00000,ko01000,ko03400	helicase involved in DNA repair and perhaps also replication
JAPHLIII_01489	2.53e-107	ypmB	-	-	S	-	-	-	protein conserved in bacteria
JAPHLIII_01490	3.1e-289	aspB	2.6.1.1, 2.6.1.14	-	E	ko:K00812,ko:K22457	ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase
JAPHLIII_01491	0.0	asnS	6.1.1.22	-	J	ko:K01893	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Asparaginyl-tRNA synthetase
JAPHLIII_01492	1.13e-165	dnaD	-	-	L	ko:K02086	-	ko00000	Replication initiation and membrane attachment
JAPHLIII_01494	2.32e-238	metN	-	-	P	ko:K02071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JAPHLIII_01495	1.41e-141	metI	-	-	P	ko:K02072	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_01496	3.19e-203	metQ1	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
JAPHLIII_01497	7.56e-109	-	-	-	T	-	-	-	Universal stress protein family
JAPHLIII_01498	0.0	ftpA	-	-	P	ko:K02011	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
JAPHLIII_01499	1.98e-234	ftpB	-	-	P	ko:K02012	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
JAPHLIII_01500	8.03e-229	phnT	3.6.3.30	-	P	ko:K02010	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATPases associated with a variety of cellular activities
JAPHLIII_01501	1.01e-154	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902 family
JAPHLIII_01502	0.0	ponA	2.4.1.129, 3.4.16.4	GT51	M	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein 1A
JAPHLIII_01503	3.6e-152	recU	-	-	L	ko:K03700	-	ko00000,ko03400	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
JAPHLIII_01504	2.12e-142	ypsA	-	-	S	-	-	-	Belongs to the UPF0398 family
JAPHLIII_01505	9.98e-75	gpsB	-	-	D	-	-	-	Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
JAPHLIII_01507	1.44e-282	ypsC	-	-	L	ko:K07444	-	ko00000,ko01000	Belongs to the methyltransferase superfamily
JAPHLIII_01508	1.26e-61	-	-	-	K	-	-	-	helix_turn_helix, Arsenical Resistance Operon Repressor
JAPHLIII_01509	1.01e-154	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902 family
JAPHLIII_01510	3.62e-287	-	-	-	P	-	-	-	Major Facilitator Superfamily
JAPHLIII_01511	4.17e-186	yitV	-	-	S	ko:K06889	-	ko00000	COG1073 Hydrolases of the alpha beta superfamily
JAPHLIII_01512	7.86e-96	-	-	-	S	-	-	-	SnoaL-like domain
JAPHLIII_01513	8.61e-310	-	-	-	M	-	-	-	Glycosyltransferase, group 2 family protein
JAPHLIII_01514	3.46e-267	mccF	-	-	V	-	-	-	LD-carboxypeptidase
JAPHLIII_01515	1.66e-101	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
JAPHLIII_01516	2.48e-311	-	-	-	M	ko:K07273	-	ko00000	hydrolase, family 25
JAPHLIII_01517	9.7e-233	-	-	-	V	-	-	-	LD-carboxypeptidase
JAPHLIII_01518	2.63e-160	-	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
JAPHLIII_01519	2.31e-157	-	-	-	P	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
JAPHLIII_01520	1.31e-246	-	-	-	-	-	-	-	-
JAPHLIII_01521	3.69e-187	-	-	-	S	-	-	-	hydrolase activity, acting on ester bonds
JAPHLIII_01522	8.53e-268	yurR	1.4.5.1	-	E	ko:K00285	ko00360,map00360	ko00000,ko00001,ko01000	FAD dependent oxidoreductase
JAPHLIII_01523	3.28e-87	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Ribonuclease HI
JAPHLIII_01524	5.04e-82	esbA	-	-	S	-	-	-	Family of unknown function (DUF5322)
JAPHLIII_01525	0.0	fhs	6.3.4.3	-	F	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the formate--tetrahydrofolate ligase family
JAPHLIII_01526	1.65e-97	lspA	3.4.23.36	-	MU	ko:K03101	ko03060,map03060	ko00000,ko00001,ko01000,ko01002	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JAPHLIII_01527	9.72e-225	rluD	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
JAPHLIII_01528	1.9e-115	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
JAPHLIII_01529	2.43e-263	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the CarA family
JAPHLIII_01530	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
JAPHLIII_01531	2.01e-145	-	-	-	G	-	-	-	Phosphoglycerate mutase family
JAPHLIII_01532	6.38e-92	frataxin	-	-	S	ko:K05937	-	ko00000	Domain of unknown function (DU1801)
JAPHLIII_01534	2.24e-167	cat	2.3.1.28	-	V	ko:K19271	-	br01600,ko00000,ko01000,ko01504	Chloramphenicol acetyltransferase
JAPHLIII_01535	8.49e-92	-	-	-	S	-	-	-	LuxR family transcriptional regulator
JAPHLIII_01536	1.19e-176	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2087)
JAPHLIII_01538	5.59e-119	-	-	-	F	-	-	-	NUDIX domain
JAPHLIII_01539	7.22e-207	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_01540	5.36e-170	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
JAPHLIII_01541	0.0	FbpA	-	-	K	-	-	-	Fibronectin-binding protein
JAPHLIII_01542	1.97e-87	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_01543	1.11e-205	-	-	-	S	-	-	-	EDD domain protein, DegV family
JAPHLIII_01544	2.47e-101	yjcF	3.5.4.33, 4.4.1.8	-	K	ko:K02348,ko:K11991,ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007,ko03016	protein acetylation
JAPHLIII_01545	2.9e-170	-	-	-	S	-	-	-	Protein of unknown function (DUF975)
JAPHLIII_01546	8.5e-40	-	-	-	-	-	-	-	-
JAPHLIII_01547	2.37e-65	-	-	-	-	-	-	-	-
JAPHLIII_01548	4.17e-192	-	-	-	C	-	-	-	Domain of unknown function (DUF4931)
JAPHLIII_01549	2.44e-267	pmrB	-	-	EGP	-	-	-	Major Facilitator Superfamily
JAPHLIII_01551	1.33e-67	XK27_08430	-	-	S	-	-	-	Staphylococcal protein of unknown function (DUF960)
JAPHLIII_01552	9.3e-167	yejC	-	-	S	-	-	-	Protein of unknown function (DUF1003)
JAPHLIII_01553	2.59e-177	XK27_00890	-	-	S	ko:K08974	-	ko00000	Domain of unknown function (DUF368)
JAPHLIII_01554	1.23e-311	aapA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
JAPHLIII_01555	1.85e-174	-	-	-	-	-	-	-	-
JAPHLIII_01556	7.79e-78	-	-	-	-	-	-	-	-
JAPHLIII_01557	0.0	lctP	-	-	C	ko:K03303	-	ko00000,ko02000	L-lactate permease
JAPHLIII_01558	4.76e-290	-	-	-	-	-	-	-	-
JAPHLIII_01559	2.13e-151	tarI	2.7.7.40, 2.7.7.60	-	I	ko:K00991,ko:K21030	ko00040,ko00900,ko01100,ko01110,ko01130,map00040,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of the cytidylyl group of CTP to D-ribitol 5-phosphate
JAPHLIII_01560	6.51e-247	tarJ	1.1.1.137, 1.1.1.405	-	E	ko:K05352,ko:K21680	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko01000	Catalyzes the NADPH dependent reduction of D-ribulose 5- phosphate to D-ribitol 5-phosphate
JAPHLIII_01561	2.03e-273	tarK	2.7.8.14, 2.7.8.46, 2.7.8.47	-	H	ko:K18704,ko:K21592	-	ko00000,ko01000	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
JAPHLIII_01562	0.0	tarL	2.7.8.14, 2.7.8.47	-	H	ko:K18704	-	ko00000,ko01000	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
JAPHLIII_01563	4.87e-123	paiA	2.3.1.57	-	K	ko:K22441	-	ko00000,ko01000	Acetyltransferase (GNAT) domain
JAPHLIII_01564	1.48e-98	-	-	-	K	-	-	-	helix_turn_helix multiple antibiotic resistance protein
JAPHLIII_01565	0.0	gshR1	1.8.1.7	-	C	ko:K00383	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Glutathione reductase
JAPHLIII_01566	7.59e-86	-	-	-	-	-	-	-	-
JAPHLIII_01567	6.1e-313	-	-	-	M	-	-	-	Glycosyl transferase family group 2
JAPHLIII_01568	0.0	-	-	-	M	-	-	-	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JAPHLIII_01569	3.44e-202	-	-	-	L	-	-	-	Phage integrase, N-terminal SAM-like domain
JAPHLIII_01570	1.07e-43	-	-	-	S	-	-	-	YozE SAM-like fold
JAPHLIII_01571	9.17e-126	msrA	1.8.4.11, 1.8.4.12	-	O	ko:K07304,ko:K12267	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JAPHLIII_01572	6.31e-104	msrB	1.8.4.12	-	O	ko:K07305	-	ko00000,ko01000	peptide methionine sulfoxide reductase
JAPHLIII_01573	3.91e-216	ppaC	3.6.1.1	-	C	ko:K15986	ko00190,map00190	ko00000,ko00001,ko01000	inorganic pyrophosphatase
JAPHLIII_01574	3.82e-228	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_01575	0.0	parC	-	-	L	ko:K02621	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
JAPHLIII_01576	0.0	parE	-	-	L	ko:K02622	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
JAPHLIII_01577	2.4e-137	plsY	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
JAPHLIII_01578	1.27e-217	lacX	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Aldose 1-epimerase
JAPHLIII_01579	0.0	hslU	-	-	O	ko:K03667	-	ko00000,ko03110	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JAPHLIII_01580	6.84e-121	hslV	3.4.25.2	-	O	ko:K01419	-	ko00000,ko01000,ko01002	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JAPHLIII_01581	1.5e-227	xerC	-	-	D	ko:K03733,ko:K04763	-	ko00000,ko03036	Belongs to the 'phage' integrase family. XerC subfamily
JAPHLIII_01582	0.0	trmFO	2.1.1.74	-	J	ko:K04094	-	ko00000,ko01000,ko03016,ko03036	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
JAPHLIII_01583	0.0	topA	5.99.1.2	-	L	ko:K03168	-	ko00000,ko01000,ko03032,ko03400	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JAPHLIII_01584	8.11e-203	dprA	-	-	LU	ko:K04096	-	ko00000	DNA protecting protein DprA
JAPHLIII_01585	2.04e-175	rnhB	3.1.26.4	-	L	ko:K03470	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JAPHLIII_01586	1.85e-206	rbgA	-	-	S	ko:K14540	-	ko00000,ko03009	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JAPHLIII_01588	1.04e-291	XK27_05470	-	-	E	-	-	-	Methionine synthase
JAPHLIII_01589	1.22e-219	cpsY	-	-	K	-	-	-	Transcriptional regulator, LysR family
JAPHLIII_01590	5.18e-222	-	-	-	L	ko:K07448	-	ko00000,ko02048	restriction endonuclease
JAPHLIII_01591	1.01e-159	-	1.5.1.40	-	S	ko:K06988	-	ko00000,ko01000	NADP oxidoreductase coenzyme F420-dependent
JAPHLIII_01592	2.48e-252	XK27_00915	-	-	C	-	-	-	Luciferase-like monooxygenase
JAPHLIII_01593	0.0	qacA	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_01594	0.0	ctpA	3.4.21.102	-	M	ko:K03797	-	ko00000,ko01000,ko01002	Belongs to the peptidase S41A family
JAPHLIII_01595	9.33e-48	yozE	-	-	S	-	-	-	Belongs to the UPF0346 family
JAPHLIII_01596	3.29e-147	ypmS	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2140)
JAPHLIII_01597	1.62e-206	XK27_03630	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase
JAPHLIII_01598	2.03e-189	WQ51_01275	-	-	S	-	-	-	EDD domain protein, DegV family
JAPHLIII_01599	1.8e-119	folA	1.5.1.3	-	H	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JAPHLIII_01600	6.7e-241	thyA	2.1.1.45	-	F	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JAPHLIII_01601	0.0	yfmR	-	-	S	ko:K15738	-	ko00000,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_01602	6.46e-109	-	-	-	-	-	-	-	-
JAPHLIII_01603	1.27e-291	cca	2.7.7.72	-	J	ko:K00974	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
JAPHLIII_01604	1.39e-185	dapB	1.17.1.8	-	E	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
JAPHLIII_01605	1.29e-192	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
JAPHLIII_01606	5.83e-291	XK27_05225	-	-	S	-	-	-	Tetratricopeptide repeat protein
JAPHLIII_01607	5.57e-55	hup	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
JAPHLIII_01608	2.06e-314	der	-	-	S	ko:K03977	-	ko00000,ko03009	GTPase that plays an essential role in the late steps of ribosome biogenesis
JAPHLIII_01609	1.98e-281	rpsA	-	-	J	ko:K02945	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein S1
JAPHLIII_01610	5.17e-151	cmk	2.7.4.25	-	F	ko:K00945	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the cytidylate kinase family. Type 1 subfamily
JAPHLIII_01611	1.25e-39	-	-	-	M	-	-	-	Lysin motif
JAPHLIII_01612	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
JAPHLIII_01613	3.38e-252	-	-	-	S	-	-	-	Helix-turn-helix domain
JAPHLIII_01614	2.24e-126	ribU	-	-	U	-	-	-	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JAPHLIII_01615	2.69e-167	rluB	5.4.99.22	-	J	ko:K06178	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
JAPHLIII_01616	1.3e-132	scpB	-	-	D	ko:K06024	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JAPHLIII_01617	7.1e-176	scpA	-	-	D	ko:K05896	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
JAPHLIII_01618	3.99e-92	ribT	-	-	K	ko:K02859	-	ko00000	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
JAPHLIII_01619	3.13e-211	xerD	-	-	D	ko:K04763	-	ko00000,ko03036	recombinase XerD
JAPHLIII_01620	7.94e-218	yitL	-	-	S	ko:K00243	-	ko00000	S1 domain
JAPHLIII_01621	2.51e-98	ytwI	-	-	S	-	-	-	Protein of unknown function (DUF441)
JAPHLIII_01622	0.0	pyk	2.7.1.40	-	G	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the pyruvate kinase family
JAPHLIII_01623	8.69e-230	pfkA	2.7.1.11	-	F	ko:K00850	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230	ko00000,ko00001,ko00002,ko01000,ko01009,ko03019	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
JAPHLIII_01624	0.0	dnaE	2.7.7.7	-	L	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase
JAPHLIII_01625	2.02e-39	-	-	-	S	-	-	-	Protein of unknown function (DUF2929)
JAPHLIII_01626	0.0	clpB	-	-	O	ko:K03695	ko04213,map04213	ko00000,ko00001,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
JAPHLIII_01627	3.17e-299	pepT	3.4.11.4	-	E	ko:K01258	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
JAPHLIII_01628	1.88e-250	yqfO	-	-	S	-	-	-	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JAPHLIII_01629	8.34e-165	trmK	2.1.1.217	-	S	ko:K06967	-	ko00000,ko01000,ko03016	SAM-dependent methyltransferase
JAPHLIII_01630	2.48e-295	-	-	-	M	-	-	-	O-Antigen ligase
JAPHLIII_01631	8.81e-166	drrB	-	-	U	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 type transporter
JAPHLIII_01632	8.46e-213	drrA	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_01633	2.74e-112	-	-	-	K	-	-	-	helix_turn_helix multiple antibiotic resistance protein
JAPHLIII_01634	0.0	pps	2.7.9.2	-	H	ko:K01007	ko00620,ko00680,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate
JAPHLIII_01635	2.27e-82	-	-	-	P	-	-	-	Rhodanese Homology Domain
JAPHLIII_01636	7.43e-119	yetL	-	-	K	-	-	-	helix_turn_helix multiple antibiotic resistance protein
JAPHLIII_01637	1.93e-266	-	-	-	-	-	-	-	-
JAPHLIII_01638	3.56e-99	-	-	-	I	-	-	-	transferase activity, transferring acyl groups other than amino-acyl groups
JAPHLIII_01639	6.06e-158	-	-	-	I	-	-	-	transferase activity, transferring acyl groups other than amino-acyl groups
JAPHLIII_01640	1.51e-232	-	-	-	C	-	-	-	Zinc-binding dehydrogenase
JAPHLIII_01641	0.0	-	-	-	P	-	-	-	Cation transporter/ATPase, N-terminus
JAPHLIII_01642	2.2e-310	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
JAPHLIII_01643	4.6e-307	-	-	-	U	ko:K18926	-	ko00000,ko00002,ko02000	Major Facilitator Superfamily
JAPHLIII_01644	4.38e-102	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_01645	2.02e-268	dapE	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
JAPHLIII_01646	0.0	nox	-	-	P	-	-	-	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
JAPHLIII_01647	1.68e-176	-	-	-	K	ko:K22103	-	ko00000,ko03000	DeoR C terminal sensor domain
JAPHLIII_01648	1.25e-140	yjhB	3.6.1.13	-	F	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	NUDIX domain
JAPHLIII_01649	1.54e-92	spx2	-	-	P	ko:K16509	-	ko00000	ArsC family
JAPHLIII_01650	1.56e-90	-	-	-	S	-	-	-	Protein of unknown function (DUF1722)
JAPHLIII_01651	5.7e-146	-	-	-	GM	-	-	-	epimerase
JAPHLIII_01652	0.0	-	-	-	S	-	-	-	Zinc finger, swim domain protein
JAPHLIII_01653	5.04e-155	-	3.1.3.18	-	S	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	ko00000,ko00001,ko01000	haloacid dehalogenase-like hydrolase
JAPHLIII_01654	2.31e-132	thgA3	2.3.1.18, 2.3.1.79	-	S	ko:K00633,ko:K00661	-	ko00000,ko01000	Maltose O-acetyltransferase
JAPHLIII_01655	2.49e-167	-	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
JAPHLIII_01656	8.81e-205	-	-	-	S	-	-	-	Alpha beta hydrolase
JAPHLIII_01657	4.15e-145	-	-	-	GM	-	-	-	NmrA-like family
JAPHLIII_01658	5.83e-100	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2255)
JAPHLIII_01659	3.31e-206	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_01660	3.11e-220	cryZ	1.1.1.1	-	C	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	nadph quinone reductase
JAPHLIII_01662	0.0	nox4	-	-	C	-	-	-	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
JAPHLIII_01663	1.11e-134	desR	-	-	K	ko:K02479,ko:K07693	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	helix_turn_helix, Lux Regulon
JAPHLIII_01664	2.23e-260	desK	2.7.13.3	-	T	ko:K07778	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
JAPHLIII_01665	4.08e-171	XK27_09830	-	-	V	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 type transporter
JAPHLIII_01666	1.98e-202	yvfR	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_01668	6.64e-109	-	-	-	K	ko:K03827	-	ko00000,ko01000	Acetyltransferase (GNAT) domain
JAPHLIII_01669	9.55e-95	-	-	-	K	-	-	-	MarR family
JAPHLIII_01670	1.49e-147	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
JAPHLIII_01671	4.36e-208	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_01672	2.02e-168	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
JAPHLIII_01673	5.21e-254	-	-	-	-	-	-	-	-
JAPHLIII_01674	5.23e-256	-	-	-	-	-	-	-	-
JAPHLIII_01675	2.45e-213	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_01676	1.18e-85	ytrA	-	-	K	ko:K07979	-	ko00000,ko03000	helix_turn_helix gluconate operon transcriptional repressor
JAPHLIII_01677	1.74e-251	sigA	-	-	K	ko:K03086	-	ko00000,ko03021	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
JAPHLIII_01678	0.0	dnaG	-	-	L	ko:K02316	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
JAPHLIII_01679	0.0	glyS	6.1.1.14	-	J	ko:K01879	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Glycyl-tRNA synthetase beta subunit
JAPHLIII_01680	8.64e-224	glyQ	6.1.1.14	-	J	ko:K01878	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	glycyl-tRNA synthetase alpha subunit
JAPHLIII_01681	2.84e-189	recO	-	-	L	ko:K03584	ko03440,map03440	ko00000,ko00001,ko03400	Involved in DNA repair and RecF pathway recombination
JAPHLIII_01682	7.92e-217	era	-	-	S	ko:K03595	-	ko00000,ko03009,ko03029	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JAPHLIII_01683	1.15e-94	dgkA	2.7.1.107, 2.7.1.66	-	M	ko:K00887,ko:K00901	ko00550,ko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00550,map00561,map00564,map01100,map01110,map04070,map04072,map05231	ko00000,ko00001,ko01000	Diacylglycerol kinase
JAPHLIII_01684	7.7e-110	ybeY	-	-	S	ko:K07042	-	ko00000,ko03009	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JAPHLIII_01685	4.81e-229	phoH	-	-	T	ko:K06217	-	ko00000	phosphate starvation-inducible protein PhoH
JAPHLIII_01686	3.69e-254	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
JAPHLIII_01687	9.21e-94	yqeY	-	-	S	ko:K09117	-	ko00000	YqeY-like protein
JAPHLIII_01688	1.09e-30	rpsU	-	-	J	ko:K02970	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bS21 family
JAPHLIII_01689	2.32e-194	yqfL	2.7.11.33, 2.7.4.28	-	F	ko:K09773	-	ko00000,ko01000	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation
JAPHLIII_01690	3.65e-166	-	-	-	C	-	-	-	Enoyl-(Acyl carrier protein) reductase
JAPHLIII_01691	1.42e-217	nfo	3.1.21.2	-	L	ko:K01151	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
JAPHLIII_01692	1.84e-284	tagB	2.7.8.44	-	M	ko:K21285	-	ko00000,ko01000	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
JAPHLIII_01693	4.35e-204	yitT	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JAPHLIII_01694	2.61e-132	msrA	1.8.4.11, 1.8.4.12	-	O	ko:K07304,ko:K12267	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JAPHLIII_01695	0.0	aspS	6.1.1.12	-	J	ko:K01876	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
JAPHLIII_01696	2.47e-310	hisS	6.1.1.21	-	J	ko:K01892	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	histidyl-tRNA synthetase
JAPHLIII_01697	2.83e-200	lytH	3.5.1.28	-	M	ko:K01448	ko01503,map01503	ko00000,ko00001,ko00002,ko01000,ko01011,ko03036	N-acetylmuramoyl-L-alanine amidase
JAPHLIII_01698	2.65e-213	-	-	-	G	-	-	-	Fructosamine kinase
JAPHLIII_01699	1.35e-147	yjcF	-	-	J	-	-	-	HAD-hyrolase-like
JAPHLIII_01700	8.2e-102	dtd	-	-	J	ko:K07560	-	ko00000,ko01000,ko03016	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
JAPHLIII_01701	0.0	relA	2.7.6.5	-	KT	ko:K00951	ko00230,map00230	ko00000,ko00001,ko01000	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JAPHLIII_01702	2.56e-76	-	-	-	-	-	-	-	-
JAPHLIII_01703	3.13e-172	rsmE	2.1.1.193	-	J	ko:K09761	-	ko00000,ko01000,ko03009	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
JAPHLIII_01704	2.04e-226	prmA	-	-	J	ko:K02687	-	ko00000,ko01000,ko03009	Ribosomal protein L11 methyltransferase
JAPHLIII_01705	1.11e-147	yxlJ	3.2.2.21	-	L	ko:K03652	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Belongs to the DNA glycosylase MPG family
JAPHLIII_01706	4.78e-65	-	-	-	-	-	-	-	-
JAPHLIII_01707	1.73e-67	-	-	-	-	-	-	-	-
JAPHLIII_01710	1.01e-158	int7	-	-	L	-	-	-	Belongs to the 'phage' integrase family
JAPHLIII_01711	0.0	lepA	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
JAPHLIII_01712	1.68e-312	dltD	-	-	M	ko:K03740	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JAPHLIII_01713	5.75e-47	dltC	6.1.1.13	-	J	ko:K14188	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
JAPHLIII_01714	1.14e-297	dltB	-	-	M	ko:K03739	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	MBOAT, membrane-bound O-acyltransferase family
JAPHLIII_01715	0.0	dltA	6.1.1.13	-	H	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
JAPHLIII_01716	8.59e-27	dltX	-	-	S	-	-	-	D-Ala-teichoic acid biosynthesis protein
JAPHLIII_01717	8.49e-266	pbpX2	-	-	V	-	-	-	Beta-lactamase
JAPHLIII_01718	2.54e-266	dnaJ	-	-	O	ko:K03686	-	ko00000,ko03029,ko03110	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
JAPHLIII_01719	0.0	dnaK	-	-	O	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Heat shock 70 kDa protein
JAPHLIII_01720	4.94e-115	grpE	-	-	O	ko:K03687	-	ko00000,ko03029,ko03110	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JAPHLIII_01721	4.42e-248	hrcA	-	-	K	ko:K03705	-	ko00000,ko03000	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
JAPHLIII_01722	1.19e-169	budA	4.1.1.5	-	Q	ko:K01575	ko00650,ko00660,map00650,map00660	ko00000,ko00001,ko01000	Alpha-acetolactate decarboxylase
JAPHLIII_01723	7.56e-242	ribF	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the ribF family
JAPHLIII_01724	6.29e-221	truB	5.4.99.25	-	J	ko:K03177,ko:K03483	-	ko00000,ko01000,ko03000,ko03016	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JAPHLIII_01725	2.93e-114	aroK	2.7.1.71	-	F	ko:K00891	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JAPHLIII_01726	2.09e-246	tyrA	1.3.1.12	-	E	ko:K04517	ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	prephenate dehydrogenase
JAPHLIII_01727	8.18e-303	aroA	2.5.1.19	-	E	ko:K00800	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate
JAPHLIII_01728	1.63e-121	-	-	-	-	-	-	-	-
JAPHLIII_01729	9.01e-276	aroC	4.2.3.5	-	E	ko:K01736	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JAPHLIII_01730	0.0	-	-	-	G	-	-	-	Major Facilitator
JAPHLIII_01731	3.04e-71	rbfA	-	-	J	ko:K02834	-	ko00000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JAPHLIII_01732	0.0	infB	-	-	J	ko:K02519	-	ko00000,ko03012,ko03029	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JAPHLIII_01733	7.75e-62	ylxQ	-	-	J	-	-	-	ribosomal protein
JAPHLIII_01734	1.71e-64	ylxR	-	-	K	ko:K07742	-	ko00000	Protein of unknown function (DUF448)
JAPHLIII_01735	1.33e-276	nusA	-	-	K	ko:K02600	-	ko00000,ko03009,ko03021	Participates in both transcription termination and antitermination
JAPHLIII_01736	1.97e-107	rimP	-	-	J	ko:K09748	-	ko00000,ko03009	Required for maturation of 30S ribosomal subunits
JAPHLIII_01737	0.0	polC	2.7.7.7	-	L	ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JAPHLIII_01738	0.0	proS	6.1.1.15	-	J	ko:K01881	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
JAPHLIII_01739	4.64e-294	rseP	-	-	M	ko:K11749	ko02024,ko04112,map02024,map04112	ko00000,ko00001,ko01000,ko01002	zinc metalloprotease
JAPHLIII_01740	1.13e-175	cdsA	2.7.7.41	-	I	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the CDS family
JAPHLIII_01741	3.71e-189	uppS	2.5.1.31	-	H	ko:K00806	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JAPHLIII_01742	9.83e-113	frr	-	-	J	ko:K02838	-	ko00000,ko03012	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
JAPHLIII_01743	3.01e-165	pyrH	2.7.4.22	-	F	ko:K09903	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphorylation of UMP to UDP
JAPHLIII_01744	1.88e-194	tsf	-	-	J	ko:K02357	-	ko00000,ko03012,ko03029	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JAPHLIII_01745	6.33e-185	rpsB	-	-	J	ko:K02967	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS2 family
JAPHLIII_01746	2.92e-172	-	-	-	S	ko:K07025	-	ko00000	Haloacid dehalogenase-like hydrolase
JAPHLIII_01747	1.92e-239	ldhD	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JAPHLIII_01748	1.02e-66	yazA	-	-	L	ko:K07461	-	ko00000	GIY-YIG catalytic domain protein
JAPHLIII_01749	3.4e-177	yabB	2.1.1.223	-	L	ko:K07461,ko:K15460	-	ko00000,ko01000,ko03016	Methyltransferase small domain
JAPHLIII_01750	8.8e-155	plsC	2.3.1.51	-	I	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Acyltransferase
JAPHLIII_01751	3.96e-44	XK26_06720	-	-	S	ko:K09976	-	ko00000	Uncharacterised protein family (UPF0154)
JAPHLIII_01752	7.68e-48	ynzC	-	-	S	-	-	-	UPF0291 protein
JAPHLIII_01753	7.22e-149	lexA	3.4.21.88	-	K	ko:K01356	-	ko00000,ko00002,ko01000,ko01002,ko03400	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JAPHLIII_01754	2.14e-120	-	-	-	-	-	-	-	-
JAPHLIII_01755	9.01e-276	mvaS	2.3.3.10	-	I	ko:K01641	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Hydroxymethylglutaryl-CoA synthase
JAPHLIII_01756	2.37e-99	-	-	-	-	-	-	-	-
JAPHLIII_01757	3.81e-87	-	-	-	-	-	-	-	-
JAPHLIII_01758	6.58e-226	csbB	-	GT2	M	ko:K20534	-	ko00000,ko01000,ko01005,ko02000	Glycosyltransferase like family 2
JAPHLIII_01761	3.53e-09	-	-	-	S	-	-	-	Short C-terminal domain
JAPHLIII_01762	4.57e-21	-	-	-	S	-	-	-	Short C-terminal domain
JAPHLIII_01763	9.99e-05	-	-	-	S	-	-	-	Short C-terminal domain
JAPHLIII_01764	1.51e-53	-	-	-	L	-	-	-	HTH-like domain
JAPHLIII_01765	1.43e-42	-	-	-	L	ko:K07483	-	ko00000	transposase activity
JAPHLIII_01766	3.4e-73	-	-	-	S	-	-	-	Phage integrase family
JAPHLIII_01769	1.75e-43	-	-	-	-	-	-	-	-
JAPHLIII_01770	1.24e-184	-	-	-	Q	-	-	-	Methyltransferase
JAPHLIII_01771	2.84e-75	ybjQ	-	-	S	-	-	-	Belongs to the UPF0145 family
JAPHLIII_01772	2.87e-270	-	-	-	EGP	-	-	-	Major facilitator Superfamily
JAPHLIII_01773	2.17e-133	-	-	-	K	-	-	-	Helix-turn-helix domain
JAPHLIII_01774	1.52e-120	apt	2.4.2.7	-	F	ko:K00759	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000,ko04147	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JAPHLIII_01775	0.0	recJ	-	-	L	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	ko00000,ko00001,ko01000,ko03400	Single-stranded-DNA-specific exonuclease RecJ
JAPHLIII_01776	1.84e-67	-	-	-	S	-	-	-	Lipopolysaccharide assembly protein A domain
JAPHLIII_01777	2.89e-179	-	-	-	S	ko:K07124	-	ko00000	Belongs to the short-chain dehydrogenases reductases (SDR) family
JAPHLIII_01778	2.05e-228	rnz	3.1.26.11	-	J	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
JAPHLIII_01779	6.62e-62	-	-	-	-	-	-	-	-
JAPHLIII_01780	1.55e-311	obg	-	-	S	ko:K03979	-	ko00000,ko01000,ko03009	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JAPHLIII_01781	3.02e-175	fruR	-	-	K	ko:K03436	-	ko00000,ko03000	DeoR C terminal sensor domain
JAPHLIII_01782	6.03e-218	pfkB	2.7.1.56	-	H	ko:K00882	ko00051,map00051	ko00000,ko00001,ko01000	Belongs to the carbohydrate kinase PfkB family. LacC subfamily
JAPHLIII_01783	0.0	fruA	2.7.1.202	-	GT	ko:K02768,ko:K02769,ko:K02770	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphotransferase System
JAPHLIII_01784	0.0	-	3.1.4.53	-	S	ko:K03651	ko00230,ko02025,map00230,map02025	ko00000,ko00001,ko01000	Calcineurin-like phosphoesterase
JAPHLIII_01785	0.0	cps4J	-	-	S	-	-	-	MatE
JAPHLIII_01786	2.05e-229	cps4I	-	-	M	-	-	-	Glycosyltransferase like family 2
JAPHLIII_01787	2.32e-298	-	-	-	-	-	-	-	-
JAPHLIII_01788	1.94e-244	cps4G	-	-	M	-	-	-	Glycosyltransferase Family 4
JAPHLIII_01789	1.4e-259	cps4F	-	-	M	-	-	-	Glycosyl transferases group 1
JAPHLIII_01790	2.33e-164	tuaA	-	-	M	-	-	-	Bacterial sugar transferase
JAPHLIII_01791	8.71e-231	cps4D	5.1.3.2, 5.1.3.25	-	M	ko:K01784,ko:K17947	ko00052,ko00520,ko00523,ko01100,ko01130,map00052,map00520,map00523,map01100,map01130	ko00000,ko00001,ko00002,ko01000	RmlD substrate binding domain
JAPHLIII_01792	5.54e-189	ywqE	3.1.3.48	-	GM	ko:K01104	-	ko00000,ko01000	PHP domain protein
JAPHLIII_01793	4.97e-157	ywqD	-	-	D	-	-	-	Capsular exopolysaccharide family
JAPHLIII_01794	2.42e-161	epsB	-	-	M	-	-	-	biosynthesis protein
JAPHLIII_01795	0.0	uvrC	-	-	L	ko:K03703	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
JAPHLIII_01796	3.97e-173	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_01797	0.0	glnPH2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
JAPHLIII_01798	5.12e-31	-	-	-	-	-	-	-	-
JAPHLIII_01799	6.47e-95	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
JAPHLIII_01800	1.3e-65	-	-	-	S	-	-	-	mazG nucleotide pyrophosphohydrolase
JAPHLIII_01801	9.6e-143	engB	-	-	D	ko:K03978	-	ko00000,ko03036	Necessary for normal cell division and for the maintenance of normal septation
JAPHLIII_01802	7.8e-300	clpX	-	-	O	ko:K03544	ko04112,map04112	ko00000,ko00001,ko03110	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JAPHLIII_01803	6.48e-288	tig	-	-	D	ko:K03545	-	ko00000	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
JAPHLIII_01804	4.38e-286	tuf	-	-	J	ko:K02358,ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03012,ko03029,ko04147	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JAPHLIII_01805	6.87e-203	-	-	-	S	-	-	-	Tetratricopeptide repeat
JAPHLIII_01806	0.0	rnjB	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JAPHLIII_01807	1.29e-200	dapA	4.3.3.7	-	E	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JAPHLIII_01808	3.84e-262	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
JAPHLIII_01809	2.9e-56	rpsO	-	-	J	ko:K02956	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JAPHLIII_01810	1.18e-46	rpsT	-	-	J	ko:K02968	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 16S ribosomal RNA
JAPHLIII_01811	0.0	-	-	-	L	ko:K07487	-	ko00000	Transposase
JAPHLIII_01812	8.43e-240	holA	2.7.7.7	-	L	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III delta subunit
JAPHLIII_01813	0.0	comEC	-	-	S	ko:K02238	-	ko00000,ko00002,ko02044	Competence protein ComEC
JAPHLIII_01814	7.1e-116	comEB	3.5.4.12	-	F	ko:K01493	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko02044	ComE operon protein 2
JAPHLIII_01815	2.56e-162	comEA	-	-	L	ko:K02237	-	ko00000,ko00002,ko02044	Competence protein ComEA
JAPHLIII_01816	1.05e-251	lon	-	-	T	ko:K07177	ko02024,map02024	ko00000,ko00001,ko01002	Belongs to the peptidase S16 family
JAPHLIII_01817	2.99e-109	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JAPHLIII_01818	4.98e-131	rsmD	2.1.1.171	-	L	ko:K08316	-	ko00000,ko01000,ko03009	RNA methyltransferase, RsmD family
JAPHLIII_01819	2.71e-66	ylbG	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2129)
JAPHLIII_01820	0.0	pyc	6.4.1.1	-	C	ko:K01958	ko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JAPHLIII_01821	2.51e-261	ftsW	-	-	D	ko:K03588	ko04112,map04112	ko00000,ko00001,ko02000,ko03036	Belongs to the SEDS family
JAPHLIII_01822	0.0	-	-	-	-	-	-	-	-
JAPHLIII_01823	0.0	icaA	-	-	M	-	-	-	Glycosyl transferase family group 2
JAPHLIII_01824	9.51e-135	-	-	-	-	-	-	-	-
JAPHLIII_01825	2.21e-257	-	-	-	-	-	-	-	-
JAPHLIII_01826	0.0	typA	-	-	T	ko:K06207	-	ko00000	GTP-binding protein TypA
JAPHLIII_01827	5e-177	suhB	3.1.3.25	-	G	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the inositol monophosphatase superfamily
JAPHLIII_01828	2.64e-62	yktA	-	-	S	-	-	-	Belongs to the UPF0223 family
JAPHLIII_01829	2.15e-209	-	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	L-malate dehydrogenase activity
JAPHLIII_01830	0.0	pdhD	1.8.1.4	-	C	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	Dehydrogenase
JAPHLIII_01831	2.36e-285	pdhC	2.3.1.12	-	C	ko:K00627	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
JAPHLIII_01832	1.28e-229	pdhB	1.2.4.1	-	C	ko:K00162	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	br01601,ko00000,ko00001,ko00002,ko01000	Transketolase, C-terminal domain protein
JAPHLIII_01833	1.21e-268	pdhA	1.2.4.1	-	C	ko:K00161	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	br01601,ko00000,ko00001,ko00002,ko01000	Dehydrogenase E1 component
JAPHLIII_01834	3.95e-132	def	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
JAPHLIII_01835	6.45e-111	-	-	-	-	-	-	-	-
JAPHLIII_01836	4.86e-45	ykzG	-	-	S	-	-	-	Belongs to the UPF0356 family
JAPHLIII_01837	0.0	rnjA	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JAPHLIII_01838	4.9e-240	ytlR	-	-	I	-	-	-	Diacylglycerol kinase catalytic domain
JAPHLIII_01839	2.16e-39	-	-	-	-	-	-	-	-
JAPHLIII_01840	4.51e-163	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC P60 family protein
JAPHLIII_01841	0.0	-	-	-	L	ko:K07487	-	ko00000	Transposase
JAPHLIII_01842	3.09e-219	prs2	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JAPHLIII_01843	0.0	recD2	3.1.11.5	-	L	ko:K03581	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
JAPHLIII_01844	1.02e-155	-	-	-	S	-	-	-	repeat protein
JAPHLIII_01845	2.41e-157	pgm6	-	-	G	-	-	-	phosphoglycerate mutase
JAPHLIII_01846	3.69e-254	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
JAPHLIII_01847	0.0	-	-	-	N	-	-	-	domain, Protein
JAPHLIII_01848	1.22e-248	-	-	-	S	-	-	-	Bacterial protein of unknown function (DUF916)
JAPHLIII_01849	4.17e-153	-	-	-	N	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_01850	4.64e-150	ktrA	-	-	P	ko:K03499	-	ko00000,ko02000	domain protein
JAPHLIII_01851	9.64e-307	ktrB	-	-	P	ko:K03498	-	ko00000,ko02000	Potassium uptake protein
JAPHLIII_01852	3.19e-285	mnmA	2.8.1.13	-	J	ko:K00566	ko04122,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
JAPHLIII_01853	4.94e-75	XK27_04120	-	-	S	-	-	-	Putative amino acid metabolism
JAPHLIII_01854	3.69e-278	iscS	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
JAPHLIII_01855	5.85e-158	mtnN	3.2.2.9	-	E	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JAPHLIII_01856	7.74e-47	-	-	-	-	-	-	-	-
JAPHLIII_01857	1.43e-124	nudF	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	ADP-ribose pyrophosphatase
JAPHLIII_01858	3.46e-242	dapF	5.1.1.7	-	E	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JAPHLIII_01859	0.0	ileS	6.1.1.5	-	J	ko:K01870	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JAPHLIII_01860	6.52e-124	divIVA	-	-	D	ko:K04074	-	ko00000,ko03036	DivIVA domain protein
JAPHLIII_01861	2.06e-187	ylmH	-	-	S	-	-	-	S4 domain protein
JAPHLIII_01862	6.45e-49	ylmG	-	-	S	ko:K02221	-	ko00000,ko02044	YGGT family
JAPHLIII_01863	1.56e-93	sepF	-	-	D	ko:K09772	-	ko00000,ko03036	Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
JAPHLIII_01864	9.39e-295	ftsZ	-	-	D	ko:K03531	ko04112,map04112	ko00000,ko00001,ko02048,ko03036,ko04812	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JAPHLIII_01865	3.55e-312	ftsA	-	-	D	ko:K03590	ko04112,map04112	ko00000,ko00001,ko03036,ko04812	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
JAPHLIII_01866	3.33e-208	divIB	-	-	D	ko:K03589	ko04112,map04112	ko00000,ko00001,ko03036	Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
JAPHLIII_01867	5e-253	murG	2.4.1.227	GT28	M	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JAPHLIII_01868	0.0	murD	6.3.2.9	-	M	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JAPHLIII_01869	2.81e-231	mraY	2.7.8.13	-	M	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JAPHLIII_01870	0.0	pbpX	-	-	M	ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
JAPHLIII_01871	7.01e-76	ftsL	-	-	D	-	-	-	Cell division protein FtsL
JAPHLIII_01872	1.74e-224	rsmH	2.1.1.199	-	J	ko:K03438	-	ko00000,ko01000,ko03009	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
JAPHLIII_01873	1.35e-100	mraZ	-	-	K	ko:K03925	-	ko00000	Belongs to the MraZ family
JAPHLIII_01874	3.22e-82	-	-	-	S	-	-	-	Protein of unknown function (DUF3397)
JAPHLIII_01875	4.99e-224	-	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
JAPHLIII_01876	0.0	ftsK	-	-	D	ko:K03466	-	ko00000,ko03036	Belongs to the FtsK SpoIIIE SftA family
JAPHLIII_01877	4.97e-124	cspR	2.1.1.207	-	J	ko:K03216	-	ko00000,ko01000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
JAPHLIII_01878	4.32e-148	-	-	-	S	ko:K07118	-	ko00000	NAD(P)H-binding
JAPHLIII_01879	3.59e-301	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
JAPHLIII_01880	5.28e-39	-	3.4.15.6	-	E	ko:K13282	-	ko00000,ko01000,ko01002	Belongs to the peptidase S51 family
JAPHLIII_01881	1.12e-207	rrmA	2.1.1.187	-	H	ko:K00563,ko:K10947	-	ko00000,ko01000,ko03000,ko03009	Methyltransferase
JAPHLIII_01882	4.82e-55	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JAPHLIII_01883	9.52e-264	XK27_05220	-	-	S	-	-	-	AI-2E family transporter
JAPHLIII_01884	2.68e-75	srlB	2.7.1.198	-	G	ko:K02781	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system glucitol/sorbitol-specific IIA component
JAPHLIII_01885	1.6e-246	pgl	3.1.1.31	-	G	ko:K07404	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Lactonase, 7-bladed beta-propeller
JAPHLIII_01886	7.21e-150	cutC	-	-	P	ko:K06201	-	ko00000	Participates in the control of copper homeostasis
JAPHLIII_01887	1.09e-222	yjbO	5.4.99.23	-	G	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
JAPHLIII_01888	1.29e-193	nadK	2.7.1.23	-	F	ko:K00858	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JAPHLIII_01889	9.08e-157	yjbM	2.7.6.5	-	S	ko:K07816	ko00230,map00230	ko00000,ko00001,ko01000	RelA SpoT domain protein
JAPHLIII_01890	2.24e-148	yjbH	-	-	Q	-	-	-	Thioredoxin
JAPHLIII_01891	0.0	pepF	-	-	E	ko:K08602	-	ko00000,ko01000,ko01002	oligoendopeptidase F
JAPHLIII_01892	3.19e-264	coiA	-	-	S	ko:K06198	-	ko00000	Competence protein
JAPHLIII_01893	7.12e-170	mecA	-	-	NOT	ko:K16511	-	ko00000	Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
JAPHLIII_01894	9.28e-89	spxA	-	-	K	ko:K16509	-	ko00000	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
JAPHLIII_01895	8.05e-178	yhfI	-	-	S	-	-	-	Metallo-beta-lactamase superfamily
JAPHLIII_01896	1.08e-117	traP	1.14.99.57	-	S	ko:K21481	-	ko00000,ko01000	enzyme involved in biosynthesis of extracellular polysaccharides
JAPHLIII_01918	1.35e-55	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
JAPHLIII_01919	1.11e-84	-	-	-	-	-	-	-	-
JAPHLIII_01920	2e-98	yugI	-	-	J	ko:K07570,ko:K07571	-	ko00000	general stress protein
JAPHLIII_01921	5.16e-141	ppiB	5.2.1.8	-	G	ko:K03768	-	ko00000,ko01000,ko03110	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JAPHLIII_01922	7.18e-153	dedA	-	-	S	ko:K03975	-	ko00000	SNARE-like domain protein
JAPHLIII_01923	2.32e-151	-	-	-	S	-	-	-	Protein of unknown function (DUF1461)
JAPHLIII_01924	7.18e-189	nagD	3.1.3.41	-	G	ko:K01101	ko00627,ko01120,map00627,map01120	ko00000,ko00001,ko01000	Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
JAPHLIII_01925	1.96e-116	yutD	-	-	S	-	-	-	Protein of unknown function (DUF1027)
JAPHLIII_01926	0.0	yunD	3.1.3.5	-	F	ko:K01081	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
JAPHLIII_01927	5.77e-151	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
JAPHLIII_01928	0.0	cycA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
JAPHLIII_01929	4.7e-282	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JAPHLIII_01930	6.37e-236	ytxK	2.1.1.72	-	L	ko:K00571	-	ko00000,ko01000,ko02048	N-6 DNA Methylase
JAPHLIII_01932	1.85e-112	-	-	-	S	-	-	-	Prokaryotic N-terminal methylation motif
JAPHLIII_01933	3.03e-27	-	-	-	-	ko:K02671	-	ko00000,ko02035,ko02044	-
JAPHLIII_01934	4.29e-108	-	-	-	NU	ko:K02246	-	ko00000,ko00002,ko02044	general secretion pathway protein
JAPHLIII_01935	1.97e-72	comGC	-	-	U	ko:K02245	-	ko00000,ko00002,ko02044	competence protein ComGC
JAPHLIII_01936	5.94e-240	comGB	-	-	NU	ko:K02244	-	ko00000,ko00002,ko02044	type II secretion system
JAPHLIII_01937	1.55e-225	comGA	-	-	NU	ko:K02243	-	ko00000,ko00002,ko02044	Type II IV secretion system protein
JAPHLIII_01938	2.06e-205	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JAPHLIII_01939	2.21e-168	yebC	-	-	K	-	-	-	Transcriptional regulatory protein
JAPHLIII_01940	2.34e-63	-	-	-	S	ko:K09004	-	ko00000	DsrE/DsrF-like family
JAPHLIII_01941	4.56e-210	-	-	-	G	-	-	-	Xylose isomerase domain protein TIM barrel
JAPHLIII_01942	5.44e-232	ccpA	-	-	K	ko:K02529	-	ko00000,ko03000	catabolite control protein A
JAPHLIII_01943	5.18e-274	pepQ	3.4.13.9	-	E	ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
JAPHLIII_01944	1.29e-105	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
JAPHLIII_01945	1.6e-96	-	-	-	-	-	-	-	-
JAPHLIII_01946	1.88e-75	ytxG	-	-	S	-	-	-	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
JAPHLIII_01947	2.31e-202	ykuT	-	-	M	ko:K16052,ko:K22044	-	ko00000,ko02000	mechanosensitive ion channel
JAPHLIII_01948	7.85e-288	hipO	3.5.1.47	-	E	ko:K05823	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
JAPHLIII_01949	2.29e-112	dapH	2.3.1.117, 2.3.1.89	-	E	ko:K00674,ko:K05822	ko00300,ko01100,ko01110,ko01120,ko01230,map00300,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
JAPHLIII_01950	7.94e-114	ykuL	-	-	S	-	-	-	(CBS) domain
JAPHLIII_01951	4.03e-125	ysnB	-	-	S	ko:K07095	-	ko00000	Phosphoesterase
JAPHLIII_01952	8.49e-144	rdgB	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JAPHLIII_01953	5.06e-194	murI	3.6.1.66, 5.1.1.3	-	M	ko:K01776,ko:K02428	ko00230,ko00471,ko01100,map00230,map00471,map01100	ko00000,ko00001,ko01000,ko01011	Provides the (R)-glutamate required for cell wall biosynthesis
JAPHLIII_01954	1.45e-161	yslB	-	-	S	-	-	-	Protein of unknown function (DUF2507)
JAPHLIII_01955	3e-69	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
JAPHLIII_01956	0.0	mutS2	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
JAPHLIII_01957	1.06e-49	-	-	-	D	ko:K09888	-	ko00000,ko03036	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
JAPHLIII_01958	1.31e-63	yrzB	-	-	S	-	-	-	Belongs to the UPF0473 family
JAPHLIII_01959	5.39e-96	yrrK	-	-	J	ko:K07447	-	ko00000,ko01000	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JAPHLIII_01960	5e-57	yrzL	-	-	S	-	-	-	Belongs to the UPF0297 family
JAPHLIII_01961	0.0	alaS	6.1.1.7	-	J	ko:K01872	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JAPHLIII_01962	2.79e-316	cshB	3.6.4.13	-	JKL	ko:K05592,ko:K18692	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
JAPHLIII_01963	8.32e-227	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHHA1 domain protein
JAPHLIII_01964	2.48e-276	dinB	2.7.7.7	-	L	ko:K02346	-	ko00000,ko01000,ko03400	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JAPHLIII_01965	1.32e-63	yajC	-	-	U	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
JAPHLIII_01966	6.98e-289	tgt	2.4.2.29	-	F	ko:K00773	-	ko00000,ko01000,ko03016	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
JAPHLIII_01967	5.87e-256	queA	2.4.99.17	-	J	ko:K07568	-	ko00000,ko01000,ko03016	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JAPHLIII_01968	2.62e-239	ruvB	3.6.4.12	-	L	ko:K03551	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
JAPHLIII_01969	2.83e-138	ruvA	3.6.4.12	-	L	ko:K03550	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
JAPHLIII_01970	4.02e-114	-	-	-	-	-	-	-	-
JAPHLIII_01971	0.0	yfhO	-	-	S	-	-	-	Bacterial membrane protein YfhO
JAPHLIII_01972	5.96e-65	-	-	-	-	-	-	-	-
JAPHLIII_01973	0.0	mutL	-	-	L	ko:K03572	ko03430,map03430	ko00000,ko00001,ko03400	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JAPHLIII_01974	0.0	mutS	-	-	L	ko:K03555	ko03430,map03430	ko00000,ko00001,ko03400	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JAPHLIII_01975	6.18e-197	ymdB	-	-	S	ko:K02029,ko:K02030,ko:K09769	-	ko00000,ko00002,ko02000	YmdB-like protein
JAPHLIII_01976	6.57e-291	rny	-	-	S	ko:K18682	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Endoribonuclease that initiates mRNA decay
JAPHLIII_01977	2.43e-264	recA	-	-	L	ko:K03553	ko03440,map03440	ko00000,ko00001,ko00002,ko03400	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JAPHLIII_01978	2.7e-295	cinA	3.5.1.42	-	S	ko:K03742,ko:K03743	ko00760,map00760	ko00000,ko00001,ko01000	Belongs to the CinA family
JAPHLIII_01979	1.92e-127	pgsA	2.7.8.5	-	I	ko:K00995	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JAPHLIII_01980	5.74e-172	ymfM	-	-	S	ko:K15539	-	ko00000	Helix-turn-helix domain
JAPHLIII_01981	0.0	ymfH	-	-	S	-	-	-	Peptidase M16
JAPHLIII_01982	7.16e-296	ymfF	-	-	S	-	-	-	Peptidase M16 inactive domain protein
JAPHLIII_01983	0.0	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
JAPHLIII_01984	1.51e-198	aatB	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein
JAPHLIII_01985	3.17e-149	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_01986	1.89e-141	yecS_2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
JAPHLIII_01987	1.23e-187	minD	-	-	D	ko:K03609	-	ko00000,ko03036,ko04812	Belongs to the ParA family
JAPHLIII_01988	3.81e-150	minC	-	-	D	ko:K03610	-	ko00000,ko03036,ko04812	Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization
JAPHLIII_01989	9.47e-115	mreD	-	-	M	ko:K03571	-	ko00000,ko03036	rod shape-determining protein MreD
JAPHLIII_01990	3.76e-184	mreC	-	-	M	ko:K03570	-	ko00000,ko03036	Involved in formation and maintenance of cell shape
JAPHLIII_01991	1.74e-211	mreB	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	cell shape determining protein MreB
JAPHLIII_01992	1.15e-150	radC	-	-	L	ko:K03630	-	ko00000	DNA repair protein
JAPHLIII_01993	9.36e-317	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
JAPHLIII_01994	0.0	valS	6.1.1.9	-	J	ko:K01873	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
JAPHLIII_01995	3.56e-116	tpx	1.11.1.15	-	O	ko:K11065	-	ko00000,ko01000	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JAPHLIII_01996	3.3e-301	gshF	6.3.2.2	-	H	ko:K01919,ko:K16786,ko:K16787	ko00270,ko00480,ko01100,ko02010,map00270,map00480,map01100,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Belongs to the glutamate--cysteine ligase type 1 family
JAPHLIII_01997	7.66e-292	thiI	2.8.1.4	-	H	ko:K03151	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JAPHLIII_01998	9.04e-278	iscS2	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
JAPHLIII_02000	0.0	ezrA	-	-	D	ko:K06286	-	ko00000,ko03036	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
JAPHLIII_02001	1.07e-104	yebR	1.8.4.14	-	T	ko:K08968	ko00270,map00270	ko00000,ko00001,ko01000	GAF domain-containing protein
JAPHLIII_02002	2.15e-137	rpsD	-	-	J	ko:K02986	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JAPHLIII_02003	4.02e-145	yktB	-	-	S	-	-	-	Belongs to the UPF0637 family
JAPHLIII_02004	2.82e-105	XK27_05190	-	-	S	-	-	-	Protein of unknown function (DUF1694)
JAPHLIII_02005	6.4e-142	-	-	-	S	-	-	-	Protein of unknown function (DUF1648)
JAPHLIII_02006	4.54e-59	-	-	-	K	-	-	-	helix_turn_helix, Arsenical Resistance Operon Repressor
JAPHLIII_02007	7.24e-291	malL	3.2.1.10	GH13	G	ko:K01182	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	COG0366 Glycosidases
JAPHLIII_02008	3.43e-55	-	2.7.1.191	-	G	ko:K02793	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system fructose IIA component
JAPHLIII_02009	5.82e-139	-	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system mannose fructose sorbose family IID component
JAPHLIII_02010	4.54e-132	-	-	-	G	ko:K02795	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sorbose-specific iic component
JAPHLIII_02011	3.79e-85	-	2.7.1.191	-	G	ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
JAPHLIII_02012	1.31e-119	-	-	-	K	-	-	-	Periplasmic binding proteins and sugar binding domain of LacI family
JAPHLIII_02013	0.0	gshAB	6.3.2.2	-	H	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the glutamate--cysteine ligase type 1 family
JAPHLIII_02014	7.27e-303	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
JAPHLIII_02015	1.34e-52	-	-	-	-	-	-	-	-
JAPHLIII_02016	2.37e-107	uspA	-	-	T	-	-	-	universal stress protein
JAPHLIII_02017	8.1e-261	bla2	3.5.2.6	-	V	ko:K17836	ko00311,ko01130,ko01501,map00311,map01130,map01501	ko00000,ko00001,ko00002,ko01000,ko01504	Beta-lactamase enzyme family
JAPHLIII_02018	4.7e-207	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
JAPHLIII_02019	0.0	glpQ3	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Glycerophosphoryl diester phosphodiesterase family
JAPHLIII_02020	6.54e-273	ddl	6.3.2.4	-	F	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Belongs to the D-alanine--D-alanine ligase family
JAPHLIII_02021	1.25e-240	-	1.1.1.1, 1.6.5.5	-	C	ko:K00001,ko:K00344	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily
JAPHLIII_02022	3.26e-227	-	-	-	S	-	-	-	Protein of unknown function (DUF2785)
JAPHLIII_02023	3.34e-215	hicD3	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
JAPHLIII_02024	3.03e-191	metQ	-	-	M	ko:K02072,ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
JAPHLIII_02025	6.02e-151	metI	-	-	U	ko:K02069,ko:K02072	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
JAPHLIII_02026	2.24e-239	metN	-	-	P	ko:K02071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JAPHLIII_02027	3.2e-64	gcsH2	-	-	E	ko:K02437	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	ko00000,ko00001,ko00002	glycine cleavage
JAPHLIII_02028	2.15e-280	rodA	-	-	D	ko:K05837	-	ko00000,ko03036	Belongs to the SEDS family
JAPHLIII_02029	2.54e-46	-	-	-	S	-	-	-	Protein of unknown function (DUF2969)
JAPHLIII_02030	1.52e-57	ytjA	-	-	S	ko:K08998	-	ko00000	Could be involved in insertion of integral membrane proteins into the membrane
JAPHLIII_02031	1.44e-230	mbl	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	Cell shape determining protein MreB Mrl
JAPHLIII_02032	1.68e-132	-	-	-	J	ko:K03817	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
JAPHLIII_02033	2.94e-315	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JAPHLIII_02034	5.95e-74	atpC	-	-	C	ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane
JAPHLIII_02035	0.0	atpD	3.6.3.14	-	C	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JAPHLIII_02036	1.3e-212	atpG	-	-	C	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JAPHLIII_02037	0.0	atpA	3.6.3.14	-	C	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JAPHLIII_02038	2.03e-118	atpH	-	-	C	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JAPHLIII_02039	5.41e-77	atpF	-	-	C	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JAPHLIII_02040	1.81e-37	atpE	-	-	C	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JAPHLIII_02041	4.82e-165	atpB	-	-	C	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko03110	it plays a direct role in the translocation of protons across the membrane
JAPHLIII_02042	1.44e-293	pyrP	-	-	F	ko:K02824	-	ko00000,ko02000	Permease
JAPHLIII_02043	7.81e-148	upp	2.4.2.9	-	F	ko:K00761	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JAPHLIII_02044	3.04e-297	glyA	2.1.2.1	-	E	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JAPHLIII_02045	4.39e-244	ywlC	2.7.7.87	-	J	ko:K07566	-	ko00000,ko01000,ko03009,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
JAPHLIII_02046	5.96e-205	prmC	2.1.1.297	-	J	ko:K02493	-	ko00000,ko01000,ko03012	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
JAPHLIII_02047	1.88e-251	prfA	-	-	J	ko:K02835	-	ko00000,ko03012	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JAPHLIII_02048	1.54e-141	tdk	2.7.1.21	-	F	ko:K00857	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	thymidine kinase
JAPHLIII_02049	0.0	murE2	6.3.2.13	-	M	ko:K01928	ko00300,ko00550,map00300,map00550	ko00000,ko00001,ko01000,ko01011	Domain of unknown function (DUF1727)
JAPHLIII_02050	1.83e-175	cobQ	-	-	S	ko:K07009	-	ko00000	glutamine amidotransferase
JAPHLIII_02051	4.95e-250	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase
JAPHLIII_02052	4.39e-244	ampC	-	-	V	-	-	-	Beta-lactamase
JAPHLIII_02053	2.1e-41	-	-	-	-	-	-	-	-
JAPHLIII_02054	1.9e-260	ilvE	2.6.1.42	-	E	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Branched-chain amino acid aminotransferase
JAPHLIII_02055	1.33e-77	-	-	-	-	-	-	-	-
JAPHLIII_02056	5.37e-182	-	-	-	-	-	-	-	-
JAPHLIII_02057	0.0	yfiC	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
JAPHLIII_02058	0.0	ycfI	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02059	1.81e-85	yxeA	-	-	S	-	-	-	Protein of unknown function (DUF1093)
JAPHLIII_02060	2.96e-182	icaB	-	-	G	-	-	-	Polysaccharide deacetylase
JAPHLIII_02062	2.05e-104	-	-	-	-	-	-	-	-
JAPHLIII_02063	1e-19	-	-	-	-	-	-	-	-
JAPHLIII_02065	1.18e-66	-	-	-	S	-	-	-	Bacteriophage holin
JAPHLIII_02066	7.86e-65	-	-	-	-	-	-	-	-
JAPHLIII_02067	1.42e-251	lysA2	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
JAPHLIII_02069	8.44e-91	-	-	-	S	-	-	-	Protein of unknown function (DUF1617)
JAPHLIII_02070	0.0	-	-	-	LM	-	-	-	DNA recombination
JAPHLIII_02071	2.29e-81	-	-	-	-	-	-	-	-
JAPHLIII_02072	0.0	-	-	-	D	-	-	-	domain protein
JAPHLIII_02073	5.86e-52	-	-	-	-	-	-	-	-
JAPHLIII_02074	6.04e-85	-	-	-	-	-	-	-	-
JAPHLIII_02075	1.97e-106	-	-	-	S	-	-	-	Phage tail tube protein, TTP
JAPHLIII_02076	6.79e-79	-	-	-	-	-	-	-	-
JAPHLIII_02077	1.57e-133	-	-	-	-	-	-	-	-
JAPHLIII_02078	1.28e-82	-	-	-	-	-	-	-	-
JAPHLIII_02079	5.21e-71	-	-	-	-	-	-	-	-
JAPHLIII_02081	2.08e-222	-	-	-	S	-	-	-	Phage major capsid protein E
JAPHLIII_02082	1.16e-63	-	-	-	-	-	-	-	-
JAPHLIII_02085	3.05e-41	-	-	-	-	-	-	-	-
JAPHLIII_02086	0.0	-	-	-	S	-	-	-	Phage Mu protein F like protein
JAPHLIII_02087	0.0	-	-	-	S	-	-	-	Phage portal protein, SPP1 Gp6-like
JAPHLIII_02088	5.96e-304	-	-	-	S	-	-	-	Terminase-like family
JAPHLIII_02089	3.4e-82	-	-	-	L	ko:K07474	-	ko00000	Terminase small subunit
JAPHLIII_02090	3.99e-33	-	-	-	S	-	-	-	Protein of unknown function (DUF2829)
JAPHLIII_02095	3.86e-107	-	-	-	S	-	-	-	Phage transcriptional regulator, ArpU family
JAPHLIII_02096	7.4e-08	-	-	-	-	-	-	-	-
JAPHLIII_02097	6.67e-86	-	-	-	L	-	-	-	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
JAPHLIII_02098	5.25e-80	-	-	-	-	-	-	-	-
JAPHLIII_02099	2.67e-66	-	-	-	-	-	-	-	-
JAPHLIII_02100	1.71e-196	-	-	-	L	-	-	-	DnaD domain protein
JAPHLIII_02101	4.22e-171	pi112	-	-	L	-	-	-	PDDEXK-like domain of unknown function (DUF3799)
JAPHLIII_02102	9.3e-193	-	-	-	L	ko:K07455	-	ko00000,ko03400	RecT family
JAPHLIII_02103	1.75e-91	-	-	-	-	-	-	-	-
JAPHLIII_02106	1.56e-103	-	-	-	-	-	-	-	-
JAPHLIII_02107	7.71e-71	-	-	-	-	-	-	-	-
JAPHLIII_02110	1.13e-36	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
JAPHLIII_02111	8.29e-51	-	-	-	K	ko:K07729	-	ko00000,ko03000	sequence-specific DNA binding
JAPHLIII_02113	2.06e-50	-	-	-	K	-	-	-	Helix-turn-helix
JAPHLIII_02114	1.32e-80	-	-	-	K	-	-	-	Helix-turn-helix domain
JAPHLIII_02115	4.71e-98	-	-	-	E	-	-	-	IrrE N-terminal-like domain
JAPHLIII_02116	1.86e-202	-	-	-	J	-	-	-	Domain of unknown function (DUF4041)
JAPHLIII_02117	2.08e-60	-	-	-	S	-	-	-	Domain of unknown function (DUF5067)
JAPHLIII_02118	1.09e-68	-	-	-	-	-	-	-	-
JAPHLIII_02121	4.61e-92	-	-	-	-	-	-	-	-
JAPHLIII_02123	7.63e-57	-	-	-	-	-	-	-	-
JAPHLIII_02127	5.36e-59	-	-	-	-	-	-	-	-
JAPHLIII_02128	1.39e-134	-	-	-	S	-	-	-	Domain of unknown function DUF1829
JAPHLIII_02129	1.09e-277	int3	-	-	L	-	-	-	Belongs to the 'phage' integrase family
JAPHLIII_02131	1.98e-40	-	-	-	-	-	-	-	-
JAPHLIII_02133	1.28e-51	-	-	-	-	-	-	-	-
JAPHLIII_02134	9.28e-58	-	-	-	-	-	-	-	-
JAPHLIII_02135	0.0	-	-	-	L	ko:K07487	-	ko00000	Transposase
JAPHLIII_02136	1.27e-109	-	-	-	K	-	-	-	MarR family
JAPHLIII_02137	0.0	-	-	-	D	-	-	-	nuclear chromosome segregation
JAPHLIII_02138	0.0	inlJ	-	-	M	-	-	-	MucBP domain
JAPHLIII_02139	6.58e-24	-	-	-	-	-	-	-	-
JAPHLIII_02140	3.26e-24	-	-	-	-	-	-	-	-
JAPHLIII_02141	1.56e-22	-	-	-	-	-	-	-	-
JAPHLIII_02142	1.07e-26	-	-	-	-	-	-	-	-
JAPHLIII_02143	9.35e-24	-	-	-	-	-	-	-	-
JAPHLIII_02144	9.35e-24	-	-	-	-	-	-	-	-
JAPHLIII_02145	9.35e-24	-	-	-	-	-	-	-	-
JAPHLIII_02146	2.16e-26	-	-	-	-	-	-	-	-
JAPHLIII_02147	4.63e-24	-	-	-	-	-	-	-	-
JAPHLIII_02148	0.0	-	3.6.3.44	-	P	ko:K18104	ko01501,ko02010,map01501,map02010	ko00000,ko00001,ko00002,ko01000,ko01504,ko02000	ABC transporter transmembrane region
JAPHLIII_02149	0.0	-	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
JAPHLIII_02150	0.0	-	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02151	2.1e-33	-	-	-	-	-	-	-	-
JAPHLIII_02152	0.0	pgi	5.3.1.9	-	G	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the GPI family
JAPHLIII_02153	2.51e-200	glcU	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
JAPHLIII_02154	5.23e-277	ywbD	2.1.1.191	-	J	ko:K06969	-	ko00000,ko01000,ko03009	S-adenosylmethionine-dependent methyltransferase
JAPHLIII_02155	0.0	yclK	-	-	T	-	-	-	Histidine kinase
JAPHLIII_02156	1.45e-173	yclJ	-	-	K	ko:K02483	-	ko00000,ko02022	response regulator
JAPHLIII_02157	2.12e-308	XK27_08635	-	-	S	ko:K09157	-	ko00000	UPF0210 protein
JAPHLIII_02158	1.06e-51	XK27_08630	-	-	T	ko:K07166	-	ko00000	Belongs to the UPF0237 family
JAPHLIII_02159	1.26e-218	-	-	-	EG	-	-	-	EamA-like transporter family
JAPHLIII_02161	6.24e-120	-	-	-	S	-	-	-	ECF-type riboflavin transporter, S component
JAPHLIII_02162	5.34e-64	-	-	-	-	-	-	-	-
JAPHLIII_02163	6.83e-274	yceI	-	-	EGP	ko:K08369	-	ko00000,ko02000	Major Facilitator
JAPHLIII_02164	8.05e-178	-	-	-	F	-	-	-	NUDIX domain
JAPHLIII_02165	2.68e-32	-	-	-	-	-	-	-	-
JAPHLIII_02167	8.16e-207	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
JAPHLIII_02168	4.27e-223	ykfC	3.4.14.13	-	M	ko:K20742	-	ko00000,ko01000,ko01002	NlpC/P60 family
JAPHLIII_02169	4.17e-107	-	-	-	K	ko:K03719	-	ko00000,ko03000,ko03036	AsnC family
JAPHLIII_02170	2.29e-48	-	-	-	-	-	-	-	-
JAPHLIII_02171	1.11e-45	-	-	-	-	-	-	-	-
JAPHLIII_02172	2.81e-278	-	-	-	T	-	-	-	diguanylate cyclase
JAPHLIII_02173	0.0	-	-	-	S	-	-	-	ABC transporter, ATP-binding protein
JAPHLIII_02174	9.24e-140	-	-	-	K	ko:K06977	-	ko00000	acetyltransferase
JAPHLIII_02175	5.76e-107	-	-	-	E	-	-	-	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
JAPHLIII_02176	9.2e-62	-	-	-	-	-	-	-	-
JAPHLIII_02177	0.0	nagE	2.7.1.193, 2.7.1.199, 2.7.1.208	-	G	ko:K02777,ko:K02802,ko:K02803,ko:K02804,ko:K20107,ko:K20108,ko:K20116,ko:K20117,ko:K20118	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
JAPHLIII_02178	4.37e-241	panE1	1.1.1.169	-	H	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JAPHLIII_02179	2.84e-208	-	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
JAPHLIII_02180	1.01e-293	hom	1.1.1.3	-	E	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Homoserine dehydrogenase
JAPHLIII_02181	1.43e-310	metY	2.5.1.49	-	E	ko:K01740	ko00270,ko01100,map00270,map01100	ko00000,ko00001,ko01000	Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
JAPHLIII_02182	1.26e-212	metAA	2.3.1.46	-	E	ko:K00651	ko00270,ko00920,ko01100,ko01110,ko01230,map00270,map00920,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Transfers an acetyl group from acetyl-CoA to
JAPHLIII_02183	1.13e-225	ABC-SBP	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_02184	2.45e-195	XK27_08840	-	-	U	ko:K05832	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
JAPHLIII_02185	1.32e-178	XK27_08845	-	-	S	ko:K05833	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02186	0.0	npr	1.11.1.1	-	C	ko:K05910	-	ko00000,ko01000	NADH oxidase
JAPHLIII_02187	2.34e-203	glxR	1.1.1.31	-	I	ko:K00020	ko00280,ko01100,map00280,map01100	ko00000,ko00001,ko01000	Dehydrogenase
JAPHLIII_02188	1.01e-176	yceF	-	-	P	ko:K05794	-	ko00000	membrane
JAPHLIII_02189	2.03e-124	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose acetyltransferase
JAPHLIII_02190	1.34e-258	hisC	2.6.1.9	-	E	ko:K00817	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JAPHLIII_02191	1.07e-68	hisE	3.6.1.31	-	E	ko:K01523	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	phosphoribosyl-ATP diphosphatase activity
JAPHLIII_02192	2.49e-77	hisI	3.5.4.19, 3.6.1.31	-	E	ko:K01496,ko:K11755	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JAPHLIII_02193	1.05e-171	hisF	-	-	E	ko:K02500	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
JAPHLIII_02194	6.84e-166	hisA	5.3.1.16	-	E	ko:K01814	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JAPHLIII_02195	2.23e-142	hisH	-	-	E	ko:K02501	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JAPHLIII_02196	1e-138	hisB	4.2.1.19	-	E	ko:K01693	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	imidazoleglycerol-phosphate dehydratase
JAPHLIII_02197	1.57e-298	hisD	1.1.1.23	-	E	ko:K00013	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JAPHLIII_02198	1.69e-151	hisG	2.4.2.17	-	F	ko:K00765,ko:K02502	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity
JAPHLIII_02199	1.33e-274	hisZ	-	-	E	ko:K02502	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
JAPHLIII_02200	6.46e-208	hisK	3.1.3.15	-	E	ko:K04486	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Histidinol phosphate phosphatase, HisJ
JAPHLIII_02201	3.05e-282	ysaA	-	-	V	-	-	-	RDD family
JAPHLIII_02202	7.28e-213	corA	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
JAPHLIII_02203	1.71e-67	-	-	-	S	-	-	-	Domain of unknown function (DU1801)
JAPHLIII_02204	2.54e-17	rmeB	-	-	K	-	-	-	transcriptional regulator, MerR family
JAPHLIII_02205	1.69e-255	asd	1.2.1.11	-	E	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JAPHLIII_02206	2.83e-238	yxeI	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
JAPHLIII_02207	1.45e-46	-	-	-	-	-	-	-	-
JAPHLIII_02208	1.26e-143	-	-	-	S	-	-	-	Protein of unknown function (DUF1211)
JAPHLIII_02209	0.0	ydgH	-	-	S	ko:K06994	-	ko00000	MMPL family
JAPHLIII_02210	8.94e-259	-	-	-	M	-	-	-	domain protein
JAPHLIII_02211	6e-106	-	-	-	M	-	-	-	domain protein
JAPHLIII_02212	7.35e-99	yjcF	-	-	S	-	-	-	Acetyltransferase (GNAT) domain
JAPHLIII_02213	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
JAPHLIII_02214	0.0	glpQ4	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	phosphodiesterase
JAPHLIII_02215	3.69e-254	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
JAPHLIII_02216	4.01e-236	yumC	1.18.1.2, 1.19.1.1	-	C	ko:K21567	-	ko00000,ko01000	Ferredoxin--NADP reductase
JAPHLIII_02217	2.14e-183	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
JAPHLIII_02218	1.66e-245	-	-	-	S	-	-	-	domain, Protein
JAPHLIII_02219	2.46e-216	-	-	-	S	-	-	-	Polyphosphate kinase 2 (PPK2)
JAPHLIII_02220	2.57e-128	-	-	-	C	-	-	-	Nitroreductase family
JAPHLIII_02221	1.23e-228	iunH1	3.2.2.1	-	F	ko:K01239	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	nucleoside hydrolase
JAPHLIII_02222	2.43e-209	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JAPHLIII_02223	8.1e-200	-	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
JAPHLIII_02224	3.16e-232	-	-	-	GK	-	-	-	ROK family
JAPHLIII_02225	2.08e-199	-	1.97.1.4	-	C	ko:K04069	-	ko00000,ko01000	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JAPHLIII_02226	3.38e-172	rdrA	-	-	K	ko:K22103	-	ko00000,ko03000	DeoR C terminal sensor domain
JAPHLIII_02227	0.0	pflD	2.3.1.54	-	C	ko:K00656	ko00620,ko00640,ko00650,ko01100,ko01120,map00620,map00640,map00650,map01100,map01120	ko00000,ko00001,ko01000	Pyruvate formate lyase-like
JAPHLIII_02228	3.53e-227	-	-	-	K	-	-	-	sugar-binding domain protein
JAPHLIII_02229	5.18e-160	mipB	2.2.1.2	-	H	ko:K00616,ko:K08314	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Transaldolase/Fructose-6-phosphate aldolase
JAPHLIII_02230	2.13e-182	-	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
JAPHLIII_02231	2.89e-224	ccpB	-	-	K	-	-	-	lacI family
JAPHLIII_02232	5.28e-203	-	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
JAPHLIII_02233	5e-227	-	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
JAPHLIII_02234	1.55e-253	yhhX	-	-	S	-	-	-	Oxidoreductase family, C-terminal alpha/beta domain
JAPHLIII_02235	0.0	nhaP2	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
JAPHLIII_02236	0.0	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JAPHLIII_02237	9.38e-139	pncA	-	-	Q	-	-	-	Isochorismatase family
JAPHLIII_02238	1.54e-171	-	-	-	-	-	-	-	-
JAPHLIII_02239	5e-162	skfE	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_02240	2.39e-85	lexA	-	-	K	ko:K07979	-	ko00000,ko03000	Transcriptional regulator, GntR family
JAPHLIII_02241	2.07e-60	-	-	-	S	-	-	-	Enterocin A Immunity
JAPHLIII_02242	3.25e-223	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
JAPHLIII_02243	0.0	pepF2	-	-	E	-	-	-	Oligopeptidase F
JAPHLIII_02244	1.4e-95	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_02245	2.64e-210	-	-	-	-	-	-	-	-
JAPHLIII_02247	0.0	-	-	-	L	ko:K07487	-	ko00000	Transposase
JAPHLIII_02248	0.0	spxB	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
JAPHLIII_02249	1e-89	-	-	-	-	-	-	-	-
JAPHLIII_02250	2.4e-186	-	-	-	S	ko:K06889	-	ko00000	Dienelactone hydrolase family
JAPHLIII_02251	9.89e-74	ytpP	-	-	CO	-	-	-	Thioredoxin
JAPHLIII_02252	3.87e-262	metB	2.5.1.48	-	E	ko:K01739	ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Cys/Met metabolism PLP-dependent enzyme
JAPHLIII_02253	3.89e-62	-	-	-	-	-	-	-	-
JAPHLIII_02254	1.57e-71	-	-	-	-	-	-	-	-
JAPHLIII_02255	6.94e-106	-	-	-	S	-	-	-	Protein of unknown function (DUF2798)
JAPHLIII_02256	4.05e-98	-	-	-	-	-	-	-	-
JAPHLIII_02257	4.15e-78	-	-	-	-	-	-	-	-
JAPHLIII_02258	4.26e-250	lplA	6.3.1.20	-	H	ko:K03800	ko00785,ko01100,map00785,map01100	ko00000,ko00001,ko01000	Lipoate-protein ligase
JAPHLIII_02259	0.0	acm2	3.2.1.17	-	NU	ko:K01185	-	ko00000,ko01000	Bacterial SH3 domain
JAPHLIII_02260	1.02e-102	uspA3	-	-	T	-	-	-	universal stress protein
JAPHLIII_02261	8.36e-202	rluA	5.4.99.23, 5.4.99.28, 5.4.99.29	-	J	ko:K06177,ko:K06180	-	ko00000,ko01000,ko03009,ko03016	Responsible for synthesis of pseudouridine from uracil
JAPHLIII_02262	2.73e-24	-	-	-	-	-	-	-	-
JAPHLIII_02263	1.09e-55	-	-	-	S	-	-	-	zinc-ribbon domain
JAPHLIII_02264	8.5e-98	tcaA	-	-	S	ko:K21463	-	ko00000	response to antibiotic
JAPHLIII_02265	4.05e-64	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
JAPHLIII_02266	1.38e-30	-	-	-	S	-	-	-	Protein of unknown function (DUF2929)
JAPHLIII_02267	1.85e-285	-	-	-	M	-	-	-	Glycosyl transferases group 1
JAPHLIII_02268	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
JAPHLIII_02269	2.35e-208	-	-	-	S	-	-	-	Putative esterase
JAPHLIII_02270	3.53e-169	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_02271	4.75e-117	ybaK	-	-	S	ko:K03976	-	ko00000,ko01000,ko03016	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JAPHLIII_02272	6.08e-179	-	-	-	-	-	-	-	-
JAPHLIII_02273	1.97e-150	yagB	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
JAPHLIII_02274	8.05e-179	rrp8	-	-	K	-	-	-	LytTr DNA-binding domain
JAPHLIII_02275	1.7e-118	-	-	-	K	-	-	-	Domain of unknown function (DUF1836)
JAPHLIII_02276	1.55e-79	-	-	-	-	-	-	-	-
JAPHLIII_02277	2.61e-96	hsp2	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
JAPHLIII_02278	2.97e-76	-	-	-	-	-	-	-	-
JAPHLIII_02279	0.0	yhdP	-	-	S	-	-	-	Transporter associated domain
JAPHLIII_02280	1.18e-114	nrdI	-	-	F	ko:K03647	-	ko00000	Belongs to the NrdI family
JAPHLIII_02281	0.0	nhaP3	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
JAPHLIII_02282	1.17e-270	yttB	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_02283	2.84e-82	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
JAPHLIII_02284	2.19e-220	-	-	-	C	-	-	-	Zinc-binding dehydrogenase
JAPHLIII_02285	4.71e-74	-	-	-	S	-	-	-	SdpI/YhfL protein family
JAPHLIII_02286	0.0	zwf	1.1.1.363, 1.1.1.49	-	G	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JAPHLIII_02287	0.0	gabR	-	-	K	ko:K00375	-	ko00000,ko03000	Bacterial regulatory proteins, gntR family
JAPHLIII_02288	1.02e-277	araT2	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
JAPHLIII_02289	1.84e-204	dapA	4.3.3.7	-	E	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JAPHLIII_02290	3.59e-26	-	-	-	-	-	-	-	-
JAPHLIII_02291	2.09e-169	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
JAPHLIII_02292	5.73e-208	mleR	-	-	K	-	-	-	LysR family
JAPHLIII_02293	1.29e-148	-	-	-	GM	-	-	-	NAD(P)H-binding
JAPHLIII_02294	3.86e-124	-	-	-	K	-	-	-	Acetyltransferase (GNAT) family
JAPHLIII_02295	0.0	addA	3.6.4.12	-	L	ko:K16898	-	ko00000,ko01000,ko03400	ATP-dependent helicase nuclease subunit A
JAPHLIII_02296	0.0	rexB	3.6.4.12	-	L	ko:K16899	-	ko00000,ko01000,ko03400	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
JAPHLIII_02297	4.54e-216	oroP	-	-	S	ko:K09936	ko02024,map02024	ko00000,ko00001,ko02000	Putative inner membrane exporter, YdcZ
JAPHLIII_02298	6.64e-146	pyrE	2.4.2.10	-	F	ko:K00762	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JAPHLIII_02299	1.09e-161	pyrF	4.1.1.23	-	F	ko:K01591	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
JAPHLIII_02300	1.04e-218	pyrD	1.3.1.14, 1.3.98.1	-	F	ko:K00226,ko:K17828	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
JAPHLIII_02301	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
JAPHLIII_02302	3.36e-272	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
JAPHLIII_02303	2.38e-310	pyrC	3.5.2.3	-	F	ko:K01465	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
JAPHLIII_02304	1.22e-220	pyrB	2.1.3.2	-	F	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the ATCase OTCase family
JAPHLIII_02305	7.13e-123	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
JAPHLIII_02306	0.0	pucR_2	-	-	QT	ko:K09684	-	ko00000,ko03000	Purine catabolism regulatory protein-like family
JAPHLIII_02307	4.41e-305	pbuX	-	-	F	ko:K03458,ko:K16169	-	ko00000,ko02000	xanthine permease
JAPHLIII_02308	5.67e-280	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	Permease family
JAPHLIII_02309	4.71e-208	-	-	-	GM	-	-	-	NmrA-like family
JAPHLIII_02310	1.25e-199	-	-	-	T	-	-	-	EAL domain
JAPHLIII_02311	1.85e-121	-	-	-	-	-	-	-	-
JAPHLIII_02312	0.0	yijG	-	GT2	M	ko:K11936	ko02026,map02026	ko00000,ko00001,ko01000,ko01003,ko02000	Glycosyl transferase
JAPHLIII_02313	3.85e-159	-	-	-	E	-	-	-	Methionine synthase
JAPHLIII_02314	6.66e-281	purD	6.3.4.13	-	F	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the GARS family
JAPHLIII_02315	0.0	purH	2.1.2.3, 3.5.4.10	-	F	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	ko00000,ko00001,ko00002,ko01000,ko04147	Bifunctional purine biosynthesis protein PurH
JAPHLIII_02316	1.79e-131	purN	2.1.2.2	-	F	ko:K11175	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JAPHLIII_02317	1.04e-243	purM	6.3.3.1	-	F	ko:K01933	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoribosylformylglycinamidine cyclo-ligase
JAPHLIII_02318	0.0	purF	2.4.2.14	-	F	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JAPHLIII_02319	0.0	purL	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JAPHLIII_02320	2.82e-163	purQ	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JAPHLIII_02321	1.17e-55	purS	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JAPHLIII_02322	3.95e-167	purC	6.3.2.6	-	F	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the SAICAR synthetase family
JAPHLIII_02323	6.77e-269	purK	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JAPHLIII_02324	3.77e-104	purE	5.4.99.18	-	F	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JAPHLIII_02325	2.48e-252	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
JAPHLIII_02326	5.19e-310	XK27_09615	1.5.1.36	-	S	ko:K19784,ko:K22393	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	reductase
JAPHLIII_02327	9.92e-143	-	-	-	S	-	-	-	NADPH-dependent FMN reductase
JAPHLIII_02328	1.16e-242	lplL	6.3.1.20	-	H	ko:K03800	ko00785,ko01100,map00785,map01100	ko00000,ko00001,ko01000	Bacterial lipoate protein ligase C-terminus
JAPHLIII_02329	2.04e-189	ptp3	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
JAPHLIII_02330	3.44e-152	cah	4.2.1.1	-	P	ko:K01674	ko00910,map00910	ko00000,ko00001,ko01000	Eukaryotic-type carbonic anhydrase
JAPHLIII_02331	9.78e-190	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
JAPHLIII_02332	1.24e-231	ansB	3.5.1.1	-	EJ	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110	ko00000,ko00001,ko01000	Asparaginase
JAPHLIII_02333	2.91e-178	cysA	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02334	0.0	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	FtsX-like permease family
JAPHLIII_02335	4.76e-56	-	-	-	-	-	-	-	-
JAPHLIII_02336	8.2e-81	-	-	-	K	-	-	-	Transcriptional regulator, GntR family
JAPHLIII_02337	7.89e-212	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02338	5.66e-189	-	-	-	-	-	-	-	-
JAPHLIII_02339	2.7e-104	usp5	-	-	T	-	-	-	universal stress protein
JAPHLIII_02340	1.08e-47	-	-	-	-	-	-	-	-
JAPHLIII_02341	4.02e-95	gtcA	-	-	S	-	-	-	Teichoic acid glycosylation protein
JAPHLIII_02342	1.02e-113	-	-	-	-	-	-	-	-
JAPHLIII_02343	1.98e-65	-	-	-	-	-	-	-	-
JAPHLIII_02344	4.79e-13	-	-	-	-	-	-	-	-
JAPHLIII_02345	3.03e-299	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase, class I
JAPHLIII_02346	1.16e-110	-	-	-	F	-	-	-	belongs to the nudix hydrolase family
JAPHLIII_02347	1.52e-151	-	-	-	-	-	-	-	-
JAPHLIII_02348	1.21e-69	-	-	-	-	-	-	-	-
JAPHLIII_02350	0.0	nplT	3.2.1.133, 3.2.1.135, 3.2.1.54	GH13	G	ko:K01208	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 13 family
JAPHLIII_02351	0.0	thrC	4.2.3.1	-	E	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Threonine synthase
JAPHLIII_02352	4.65e-186	-	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
JAPHLIII_02353	1.18e-40	-	-	-	S	-	-	-	Pentapeptide repeats (8 copies)
JAPHLIII_02354	1.76e-143	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose acetyltransferase
JAPHLIII_02355	5.38e-131	-	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	Belongs to the Nudix hydrolase family
JAPHLIII_02356	2.26e-91	-	-	-	FG	-	-	-	Scavenger mRNA decapping enzyme C-term binding
JAPHLIII_02357	1.62e-173	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl-(Acyl carrier protein) reductase
JAPHLIII_02358	3.94e-49	XK27_01315	-	-	S	-	-	-	Protein of unknown function (DUF2829)
JAPHLIII_02359	3.48e-269	ybhE	-	-	S	ko:K09963	-	ko00000	Bacterial protein of unknown function (DUF871)
JAPHLIII_02360	4.43e-294	-	-	-	S	-	-	-	Sterol carrier protein domain
JAPHLIII_02361	1.66e-287	-	-	-	EGP	-	-	-	Transmembrane secretion effector
JAPHLIII_02362	3.74e-115	yrxA	-	-	S	ko:K07105	-	ko00000	3H domain
JAPHLIII_02363	0.0	nadC2	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JAPHLIII_02364	2.13e-152	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_02365	9.76e-234	-	-	-	V	ko:K01992	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_02366	4.29e-173	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	AAA domain, putative AbiEii toxin, Type IV TA system
JAPHLIII_02367	0.0	dsdA	4.3.1.18	-	E	ko:K01753	ko00260,map00260	ko00000,ko00001,ko01000	Belongs to the serine threonine dehydratase family. DsdA subfamily
JAPHLIII_02368	0.0	pbg4	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_02369	0.0	pbg5	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_02370	2.73e-73	celC	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose Cellobiose specific IIA subunit
JAPHLIII_02371	1.86e-64	pts20B	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
JAPHLIII_02372	6.37e-169	gntR	-	-	K	ko:K03489	-	ko00000,ko03000	UTRA
JAPHLIII_02373	1.4e-181	epsV	-	-	S	-	-	-	glycosyl transferase family 2
JAPHLIII_02374	1.75e-156	pgm7	-	-	G	-	-	-	Phosphoglycerate mutase family
JAPHLIII_02375	7.63e-107	-	-	-	-	-	-	-	-
JAPHLIII_02376	5.06e-196	-	-	-	S	-	-	-	hydrolase
JAPHLIII_02377	1.51e-235	ykpB	1.1.1.169	-	H	ko:K00077	ko00770,ko01100,ko01110,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JAPHLIII_02378	2.8e-204	-	-	-	EG	-	-	-	EamA-like transporter family
JAPHLIII_02379	4.12e-226	serA1	-	-	EH	-	-	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
JAPHLIII_02380	1.54e-131	-	1.5.1.40	-	S	ko:K06988	-	ko00000,ko01000	NADP oxidoreductase coenzyme F420-dependent
JAPHLIII_02381	0.0	-	-	-	-	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	-
JAPHLIII_02382	6.75e-101	fld	-	-	C	ko:K03839	-	ko00000	Flavodoxin
JAPHLIII_02383	0.0	-	-	-	M	-	-	-	Domain of unknown function (DUF5011)
JAPHLIII_02384	0.0	-	-	-	M	-	-	-	Bacterial surface protein 26-residue PARCEL repeat (3 repeats)
JAPHLIII_02385	4.3e-44	-	-	-	-	-	-	-	-
JAPHLIII_02386	4.11e-165	aroC1	4.2.1.10	-	E	ko:K03785	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Type I 3-dehydroquinase
JAPHLIII_02387	0.0	ycaM	-	-	E	-	-	-	amino acid
JAPHLIII_02388	2.45e-101	-	-	-	K	-	-	-	Winged helix DNA-binding domain
JAPHLIII_02389	1.42e-212	-	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	Oxidoreductase, aldo keto reductase family protein
JAPHLIII_02390	5.11e-208	akr5f	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
JAPHLIII_02391	1.3e-209	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_02393	1.35e-55	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
JAPHLIII_02394	1.97e-110	-	-	-	S	-	-	-	Pfam:DUF3816
JAPHLIII_02395	7.01e-306	tyrS	6.1.1.1	-	J	ko:K01866	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JAPHLIII_02396	1.27e-143	-	-	-	-	-	-	-	-
JAPHLIII_02397	4.39e-229	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
JAPHLIII_02398	1.1e-184	-	-	-	S	-	-	-	Peptidase_C39 like family
JAPHLIII_02399	1.04e-120	-	-	-	S	-	-	-	Protein of unknown function (DUF1694)
JAPHLIII_02400	3.38e-150	-	-	-	S	ko:K07150	-	ko00000	Protein of unknown function (DUF554)
JAPHLIII_02401	9.79e-191	-	-	-	KT	-	-	-	helix_turn_helix, mercury resistance
JAPHLIII_02402	1.01e-154	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902 family
JAPHLIII_02403	3.41e-295	gltT	-	-	U	ko:K03309,ko:K11102	-	ko00000,ko02000	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family
JAPHLIII_02404	1.86e-123	-	-	-	S	ko:K08996	-	ko00000	Protein of unknown function (DUF1440)
JAPHLIII_02405	1.2e-240	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
JAPHLIII_02406	4.13e-156	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02407	2.76e-117	-	-	-	T	ko:K16923	-	ko00000,ko00002,ko02000	phosphorelay sensor kinase activity
JAPHLIII_02408	2e-238	iunH3	3.2.2.1	-	F	ko:K01239	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	Inosine-uridine preferring nucleoside hydrolase
JAPHLIII_02409	3.55e-127	ywjB	-	-	H	-	-	-	RibD C-terminal domain
JAPHLIII_02410	1.97e-258	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
JAPHLIII_02411	9.01e-155	-	-	-	S	-	-	-	Membrane
JAPHLIII_02412	2.11e-199	mleP3	-	-	S	ko:K07088	-	ko00000	Membrane transport protein
JAPHLIII_02413	0.0	aspA	4.3.1.1	-	E	ko:K01744	ko00250,ko01100,map00250,map01100	ko00000,ko00001,ko01000	Fumarase C C-terminus
JAPHLIII_02414	3.04e-261	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
JAPHLIII_02415	7.22e-163	-	3.8.1.2	-	S	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
JAPHLIII_02416	0.0	ycnB	-	-	U	-	-	-	Belongs to the major facilitator superfamily
JAPHLIII_02417	4.03e-104	-	-	-	S	-	-	-	Domain of unknown function (DUF4811)
JAPHLIII_02418	8.99e-133	ydaF	-	-	J	ko:K03817	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
JAPHLIII_02419	4.38e-222	-	-	-	S	-	-	-	Conserved hypothetical protein 698
JAPHLIII_02420	2.06e-194	rlrG	-	-	K	ko:K21900	-	ko00000,ko03000	Transcriptional regulator
JAPHLIII_02421	0.0	tagE5	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Poly(Glycerol-phosphate) alpha-glucosyltransferase
JAPHLIII_02422	0.0	tagE6	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
JAPHLIII_02423	6.48e-79	-	-	-	M	-	-	-	LysM domain protein
JAPHLIII_02424	4.96e-88	-	-	-	M	-	-	-	LysM domain
JAPHLIII_02425	1.6e-119	adaB	2.1.1.63	-	L	ko:K00567,ko:K10778,ko:K13531	-	ko00000,ko01000,ko03000,ko03400	Methyltransferase
JAPHLIII_02426	4.23e-215	natA	-	-	S	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02427	7.88e-269	natB	-	-	CP	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
JAPHLIII_02428	6.27e-166	-	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
JAPHLIII_02429	1.16e-72	cmd	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Carboxymuconolactone decarboxylase family
JAPHLIII_02430	4.77e-100	yphH	-	-	S	-	-	-	Cupin domain
JAPHLIII_02431	7.37e-103	-	-	-	K	-	-	-	transcriptional regulator, MerR family
JAPHLIII_02432	5.3e-302	dapE	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
JAPHLIII_02433	0.0	ylbB	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
JAPHLIII_02434	1.74e-156	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02436	2.93e-151	nth	4.2.99.18	-	L	ko:K10773	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JAPHLIII_02437	3.18e-141	thgA3	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose acetyltransferase
JAPHLIII_02438	1.03e-150	lepB	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
JAPHLIII_02439	2.82e-110	-	-	-	-	-	-	-	-
JAPHLIII_02440	5.14e-111	yvbK	-	-	K	-	-	-	GNAT family
JAPHLIII_02441	2.8e-49	-	-	-	-	-	-	-	-
JAPHLIII_02442	2.81e-64	-	-	-	-	-	-	-	-
JAPHLIII_02443	5.46e-145	pgm8	-	-	G	-	-	-	Histidine phosphatase superfamily (branch 1)
JAPHLIII_02444	5.01e-82	-	-	-	S	-	-	-	Domain of unknown function (DUF4440)
JAPHLIII_02445	6.67e-204	-	-	-	K	-	-	-	LysR substrate binding domain
JAPHLIII_02446	2.53e-134	-	-	-	GM	-	-	-	NAD(P)H-binding
JAPHLIII_02447	2.03e-248	adh2	1.1.1.1	-	E	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	alcohol dehydrogenase
JAPHLIII_02448	5.85e-194	-	-	-	IQ	-	-	-	Enoyl-(Acyl carrier protein) reductase
JAPHLIII_02449	1.2e-181	-	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
JAPHLIII_02450	4.83e-105	-	-	-	S	-	-	-	Protein of unknown function (DUF1211)
JAPHLIII_02451	2.14e-98	-	-	-	C	-	-	-	Flavodoxin
JAPHLIII_02452	2.78e-160	gdh	1.1.1.47	-	IQ	ko:K00034	ko00030,ko01120,ko01200,map00030,map01120,map01200	ko00000,ko00001,ko01000	reductase
JAPHLIII_02453	1.43e-114	-	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
JAPHLIII_02454	9.08e-112	-	-	-	GM	-	-	-	NAD(P)H-binding
JAPHLIII_02455	2.11e-132	akr5f	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
JAPHLIII_02456	5.63e-98	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_02458	1.03e-31	-	-	-	C	-	-	-	Flavodoxin
JAPHLIII_02459	1.69e-08	adhR	-	-	K	-	-	-	helix_turn_helix, mercury resistance
JAPHLIII_02460	9.99e-147	-	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
JAPHLIII_02461	2.41e-165	-	-	-	C	-	-	-	Aldo keto reductase
JAPHLIII_02462	4.02e-181	akr5f	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
JAPHLIII_02463	2.17e-178	-	-	-	EGP	ko:K08166	-	ko00000,ko02000	Major Facilitator Superfamily
JAPHLIII_02464	5.55e-106	-	-	-	GM	-	-	-	NAD(P)H-binding
JAPHLIII_02465	2.1e-99	-	-	-	T	-	-	-	Belongs to the universal stress protein A family
JAPHLIII_02466	1.04e-124	maa	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose O-acetyltransferase
JAPHLIII_02467	3.04e-163	ysaA	3.1.3.5, 3.8.1.2	-	S	ko:K01560,ko:K07025,ko:K08723	ko00230,ko00240,ko00361,ko00625,ko00760,ko01100,ko01110,ko01120,map00230,map00240,map00361,map00625,map00760,map01100,map01110,map01120	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
JAPHLIII_02468	5.69e-80	-	-	-	-	-	-	-	-
JAPHLIII_02469	5.52e-133	-	1.5.1.40	-	S	ko:K06988	-	ko00000,ko01000	NADP oxidoreductase coenzyme F420-dependent
JAPHLIII_02470	3.31e-283	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase, class I
JAPHLIII_02471	1.86e-132	-	-	-	M	-	-	-	Protein of unknown function (DUF3737)
JAPHLIII_02472	1.01e-191	-	-	-	C	-	-	-	Aldo/keto reductase family
JAPHLIII_02474	0.0	mdlB	-	-	V	ko:K06147,ko:K18890	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_02475	0.0	mdlA	-	-	V	ko:K06148,ko:K18889	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_02476	3.17e-314	-	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_02478	7.16e-313	yhgE	-	-	V	ko:K01421	-	ko00000	domain protein
JAPHLIII_02479	3.01e-124	-	-	-	K	-	-	-	Transcriptional regulator (TetR family)
JAPHLIII_02480	6.88e-71	-	-	-	K	-	-	-	helix_turn_helix, Arsenical Resistance Operon Repressor
JAPHLIII_02481	1.19e-194	endA	-	-	F	ko:K15051	-	ko00000	DNA RNA non-specific endonuclease
JAPHLIII_02482	2.81e-134	yokL3	-	-	J	-	-	-	Acetyltransferase (GNAT) domain
JAPHLIII_02483	7.2e-125	-	2.3.1.128	-	J	ko:K03790	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
JAPHLIII_02484	6.3e-169	-	-	-	M	-	-	-	Phosphotransferase enzyme family
JAPHLIII_02485	3.72e-281	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
JAPHLIII_02486	0.0	ykpA	-	-	S	-	-	-	ABC transporter, ATP-binding protein
JAPHLIII_02487	1.9e-189	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
JAPHLIII_02488	0.0	-	-	-	S	-	-	-	Predicted membrane protein (DUF2207)
JAPHLIII_02489	0.0	uvrA3	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	excinuclease ABC
JAPHLIII_02490	2.84e-266	-	-	-	EGP	-	-	-	Major facilitator Superfamily
JAPHLIII_02491	2.78e-222	ropB	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
JAPHLIII_02492	5.22e-229	-	3.4.11.5	-	I	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
JAPHLIII_02493	0.0	-	-	-	E	ko:K03294	-	ko00000	Amino acid permease
JAPHLIII_02494	5.9e-297	yxiO	-	-	S	ko:K06902	ko04138,map04138	ko00000,ko00001,ko02000,ko04131	Vacuole effluxer Atg22 like
JAPHLIII_02495	0.0	npp	-	-	S	-	-	-	type I phosphodiesterase nucleotide pyrophosphatase
JAPHLIII_02496	2.34e-205	-	-	-	I	-	-	-	alpha/beta hydrolase fold
JAPHLIII_02497	1.75e-168	treR	-	-	K	ko:K03486	-	ko00000,ko03000	UTRA
JAPHLIII_02498	0.0	-	-	-	-	-	-	-	-
JAPHLIII_02499	2e-52	-	-	-	S	-	-	-	Cytochrome B5
JAPHLIII_02500	8.68e-118	pts21A	-	-	G	ko:K02755	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
JAPHLIII_02501	2.05e-279	-	-	-	T	-	-	-	Diguanylate cyclase, GGDEF domain
JAPHLIII_02502	8.07e-163	-	-	-	T	-	-	-	Putative diguanylate phosphodiesterase
JAPHLIII_02503	3.83e-135	nrdG	1.97.1.4	-	O	ko:K04068	-	ko00000,ko01000	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JAPHLIII_02504	0.0	nrdD	1.1.98.6	-	F	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Ribonucleoside-triphosphate reductase
JAPHLIII_02505	1.56e-108	-	-	-	-	-	-	-	-
JAPHLIII_02506	5.97e-96	def2	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins
JAPHLIII_02507	1.59e-243	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
JAPHLIII_02508	1.26e-245	dus	-	-	J	-	-	-	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JAPHLIII_02509	3.7e-30	-	-	-	-	-	-	-	-
JAPHLIII_02510	1.05e-133	-	-	-	-	-	-	-	-
JAPHLIII_02511	7.21e-195	-	-	-	K	-	-	-	LysR substrate binding domain
JAPHLIII_02512	1.24e-313	-	-	-	P	-	-	-	Sodium:sulfate symporter transmembrane region
JAPHLIII_02513	0.0	-	4.1.1.98	-	H	ko:K03182	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
JAPHLIII_02514	0.0	tcaA	-	-	S	ko:K21463	-	ko00000	response to antibiotic
JAPHLIII_02515	3.93e-182	-	-	-	S	-	-	-	zinc-ribbon domain
JAPHLIII_02517	4.29e-50	-	-	-	-	-	-	-	-
JAPHLIII_02518	1.27e-146	-	-	-	S	ko:K06889	-	ko00000	Alpha/beta hydrolase family
JAPHLIII_02519	6.74e-231	-	-	-	S	ko:K07035	-	ko00000	Phosphotransferase system, EIIC
JAPHLIII_02520	0.0	-	-	-	I	-	-	-	acetylesterase activity
JAPHLIII_02521	1.21e-298	-	-	-	M	-	-	-	Collagen binding domain
JAPHLIII_02522	1.15e-204	yicL	-	-	EG	-	-	-	EamA-like transporter family
JAPHLIII_02523	3.03e-166	-	-	-	E	-	-	-	lipolytic protein G-D-S-L family
JAPHLIII_02524	1.44e-226	-	4.1.1.52	-	S	ko:K22213	-	ko00000,ko01000	Amidohydrolase
JAPHLIII_02525	1.98e-142	-	-	-	K	-	-	-	Transcriptional regulator C-terminal region
JAPHLIII_02526	8.76e-63	-	-	-	K	-	-	-	HxlR-like helix-turn-helix
JAPHLIII_02527	1.07e-206	ypbG	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	ROK family
JAPHLIII_02528	0.0	lmrA	3.6.3.44	-	V	ko:K02021,ko:K18104	ko01501,ko02010,map01501,map02010	ko00000,ko00001,ko00002,ko01000,ko01504,ko02000	ABC transporter
JAPHLIII_02529	5.24e-124	-	-	-	K	-	-	-	Transcriptional regulator, MarR family
JAPHLIII_02530	8.08e-154	ydgI3	-	-	C	-	-	-	Nitroreductase family
JAPHLIII_02531	0.0	nagE	2.7.1.193, 2.7.1.199, 2.7.1.208	-	G	ko:K02777,ko:K02802,ko:K02803,ko:K02804,ko:K20107,ko:K20108,ko:K20116,ko:K20117,ko:K20118	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
JAPHLIII_02532	6.24e-152	-	-	-	S	ko:K05833	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
JAPHLIII_02533	2.48e-199	WQ51_06230	-	-	U	ko:K05832	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
JAPHLIII_02534	7.28e-218	XK27_00670	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_02535	0.0	-	-	-	-	-	-	-	-
JAPHLIII_02536	1.2e-83	-	-	-	-	-	-	-	-
JAPHLIII_02537	9.55e-243	-	-	-	S	-	-	-	Cell surface protein
JAPHLIII_02538	1.27e-137	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_02539	1.91e-124	acuB	-	-	S	ko:K04767	-	ko00000	Domain in cystathionine beta-synthase and other proteins.
JAPHLIII_02540	7.96e-158	livF	-	-	E	ko:K01996	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_02541	1.28e-180	livG	-	-	E	ko:K01995	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Branched-chain amino acid ATP-binding cassette transporter
JAPHLIII_02542	7.65e-192	livM	-	-	E	ko:K01997,ko:K01998	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Branched-chain amino acid transport system / permease component
JAPHLIII_02543	9.73e-197	livH	-	-	U	ko:K01997	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Branched-chain amino acid transport system / permease component
JAPHLIII_02544	2.1e-269	livJ	-	-	E	ko:K01999	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Receptor family ligand binding region
JAPHLIII_02546	1.01e-154	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902 family
JAPHLIII_02547	1.15e-43	-	-	-	-	-	-	-	-
JAPHLIII_02548	5.67e-167	zmp3	-	-	O	-	-	-	Zinc-dependent metalloprotease
JAPHLIII_02549	1.17e-105	gtcA3	-	-	S	-	-	-	GtrA-like protein
JAPHLIII_02550	5.67e-157	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
JAPHLIII_02551	0.0	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
JAPHLIII_02552	1.18e-94	usp2	-	-	T	-	-	-	Belongs to the universal stress protein A family
JAPHLIII_02553	7.03e-62	-	-	-	-	-	-	-	-
JAPHLIII_02554	1.81e-150	-	-	-	S	-	-	-	SNARE associated Golgi protein
JAPHLIII_02555	8.58e-65	czrA	-	-	K	ko:K22043	-	ko00000,ko03000	Transcriptional regulator, ArsR family
JAPHLIII_02556	4.57e-123	-	-	-	P	-	-	-	Cadmium resistance transporter
JAPHLIII_02557	0.0	yhcA	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02558	0.0	-	-	-	P	-	-	-	Concanavalin A-like lectin/glucanases superfamily
JAPHLIII_02559	2.03e-84	-	-	-	-	-	-	-	-
JAPHLIII_02560	1.93e-205	prpA3	3.1.3.16	-	T	ko:K01090	-	ko00000,ko01000	Calcineurin-like phosphoesterase superfamily domain
JAPHLIII_02561	1.21e-73	-	-	-	-	-	-	-	-
JAPHLIII_02562	1.24e-194	-	-	-	K	-	-	-	Helix-turn-helix domain
JAPHLIII_02563	2.26e-99	pts23A	-	-	G	ko:K02777	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	ko00000,ko00001,ko00002,ko01000,ko02000	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
JAPHLIII_02564	7.47e-70	ptcB	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
JAPHLIII_02565	0.0	pts23C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_02566	0.0	pbg6	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_02567	1.29e-236	-	-	-	GM	-	-	-	Male sterility protein
JAPHLIII_02568	2.1e-99	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
JAPHLIII_02569	5.5e-97	-	-	-	M	-	-	-	LysM domain
JAPHLIII_02570	8.3e-128	-	-	-	M	-	-	-	Lysin motif
JAPHLIII_02571	1.4e-138	-	-	-	S	-	-	-	SdpI/YhfL protein family
JAPHLIII_02572	5.3e-71	nudA	-	-	S	-	-	-	ASCH
JAPHLIII_02573	8.19e-212	psaA	-	-	P	ko:K02077,ko:K11707	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
JAPHLIII_02574	2.93e-119	-	-	-	-	-	-	-	-
JAPHLIII_02575	7.81e-155	tag	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Methyladenine glycosylase
JAPHLIII_02576	1.45e-280	-	-	-	T	-	-	-	diguanylate cyclase
JAPHLIII_02577	7.43e-97	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
JAPHLIII_02578	0.0	umuC	-	-	L	ko:K03502	-	ko00000,ko03400	impB/mucB/samB family C-terminal domain
JAPHLIII_02579	1.17e-214	-	-	-	K	-	-	-	Bacterial regulatory helix-turn-helix protein, lysR family
JAPHLIII_02580	5.26e-96	-	-	-	-	-	-	-	-
JAPHLIII_02581	6.54e-168	-	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
JAPHLIII_02582	3.79e-222	-	-	-	C	-	-	-	C4-dicarboxylate transmembrane transporter activity
JAPHLIII_02583	2.15e-151	-	-	-	GM	-	-	-	NAD(P)H-binding
JAPHLIII_02584	1.17e-120	-	-	-	S	ko:K06910	-	ko00000	Phosphatidylethanolamine-binding protein
JAPHLIII_02585	6.7e-102	yphH	-	-	S	-	-	-	Cupin domain
JAPHLIII_02586	3.55e-79	-	-	-	I	-	-	-	sulfurtransferase activity
JAPHLIII_02587	6.61e-179	gdh	1.1.1.47, 1.1.1.53	-	IQ	ko:K00034,ko:K00038	ko00030,ko00140,ko01100,ko01120,ko01200,map00030,map00140,map01100,map01120,map01200	ko00000,ko00001,ko01000	reductase
JAPHLIII_02588	8.38e-152	-	-	-	GM	-	-	-	NAD(P)H-binding
JAPHLIII_02589	4.66e-277	-	-	-	-	-	-	-	-
JAPHLIII_02590	0.0	-	-	-	V	ko:K06147,ko:K18892	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_02591	0.0	XK27_09600	-	-	V	ko:K06147,ko:K18891	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02592	1.3e-226	-	-	-	O	-	-	-	protein import
JAPHLIII_02593	5.35e-289	amd	-	-	E	-	-	-	Peptidase family M20/M25/M40
JAPHLIII_02594	2.96e-209	yhxD	-	-	IQ	-	-	-	KR domain
JAPHLIII_02596	3.4e-93	-	-	-	-	-	-	-	-
JAPHLIII_02597	5.2e-187	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
JAPHLIII_02598	0.0	-	-	-	E	-	-	-	Amino Acid
JAPHLIII_02599	2.03e-87	lysM	-	-	M	-	-	-	LysM domain
JAPHLIII_02600	4.2e-286	dhaT	1.1.1.202	-	C	ko:K00086	ko00561,ko00640,map00561,map00640	ko00000,ko00001,ko01000	Dehydrogenase
JAPHLIII_02601	6.8e-272	adhC	1.1.1.90	-	C	ko:K00055	ko00350,ko00360,ko00622,ko00623,ko01100,ko01120,ko01220,map00350,map00360,map00622,map00623,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Zn-dependent alcohol dehydrogenases, class III
JAPHLIII_02602	0.0	copA	3.6.3.3, 3.6.3.4, 3.6.3.5, 3.6.3.54	-	P	ko:K01533,ko:K01534,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	P-type ATPase
JAPHLIII_02603	7.11e-57	-	-	-	S	-	-	-	Cupredoxin-like domain
JAPHLIII_02604	1.36e-84	-	-	-	S	-	-	-	Cupredoxin-like domain
JAPHLIII_02605	0.0	aapA	-	-	M	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JAPHLIII_02606	2.81e-181	-	-	-	K	-	-	-	Helix-turn-helix domain
JAPHLIII_02607	1.47e-51	-	-	-	S	ko:K07343	-	ko00000	TfoX C-terminal domain
JAPHLIII_02608	3.05e-289	hpk9	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
JAPHLIII_02609	0.0	-	-	-	-	-	-	-	-
JAPHLIII_02610	2.69e-99	-	-	-	-	-	-	-	-
JAPHLIII_02611	2.85e-243	-	-	-	S	-	-	-	Cell surface protein
JAPHLIII_02612	6.02e-137	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_02613	9.33e-226	-	-	-	C	-	-	-	Alcohol dehydrogenase GroES-like domain
JAPHLIII_02614	1.22e-88	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
JAPHLIII_02615	1.07e-149	-	-	-	S	-	-	-	GyrI-like small molecule binding domain
JAPHLIII_02616	3.2e-243	ynjC	-	-	S	-	-	-	Cell surface protein
JAPHLIII_02617	4.48e-130	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_02618	5.32e-304	-	-	-	NU	-	-	-	Mycoplasma protein of unknown function, DUF285
JAPHLIII_02619	1.95e-155	-	-	-	-	-	-	-	-
JAPHLIII_02620	5.03e-148	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
JAPHLIII_02621	9.02e-76	padR	-	-	K	ko:K10947	-	ko00000,ko03000	Transcriptional regulator PadR-like family
JAPHLIII_02622	2.58e-154	ORF00048	-	-	-	-	-	-	-
JAPHLIII_02623	3.25e-81	ytcD	-	-	K	-	-	-	Transcriptional regulator, HxlR family
JAPHLIII_02624	1.81e-272	-	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_02625	7.81e-148	-	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
JAPHLIII_02626	0.0	asnB	6.3.5.4	-	E	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	ko00000,ko00001,ko01000,ko01002	Asparagine synthase
JAPHLIII_02627	1.38e-174	-	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
JAPHLIII_02628	1.77e-282	blpH	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
JAPHLIII_02629	4.56e-130	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_02630	5.35e-216	-	-	-	GM	-	-	-	NmrA-like family
JAPHLIII_02631	0.0	gabD	1.2.1.16, 1.2.1.20, 1.2.1.79	-	C	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Belongs to the aldehyde dehydrogenase family
JAPHLIII_02632	0.0	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
JAPHLIII_02633	1.62e-62	-	-	-	S	-	-	-	Domain of unknown function (DUF1905)
JAPHLIII_02634	1.27e-83	-	-	-	K	-	-	-	HxlR-like helix-turn-helix
JAPHLIII_02635	3.27e-170	-	-	-	S	-	-	-	KR domain
JAPHLIII_02636	2.46e-127	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_02637	9.95e-244	-	1.1.1.219	-	GM	ko:K00091	-	ko00000,ko01000	Male sterility protein
JAPHLIII_02638	1.34e-48	-	-	-	S	-	-	-	Protein of unknown function (DUF1211)
JAPHLIII_02639	1.08e-54	-	-	-	S	-	-	-	Protein of unknown function (DUF1211)
JAPHLIII_02640	1.97e-229	ydhF	-	-	S	-	-	-	Aldo keto reductase
JAPHLIII_02641	0.0	yfjF	-	-	U	-	-	-	Sugar (and other) transporter
JAPHLIII_02642	7.57e-141	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_02643	2.87e-218	fhuD	-	-	P	ko:K02016	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Periplasmic binding protein
JAPHLIII_02644	2.6e-187	fhuC	3.6.3.34	-	HP	ko:K02013	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
JAPHLIII_02645	1.81e-228	fhuB	-	-	U	ko:K02015	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JAPHLIII_02646	6.7e-219	fhuG	-	-	U	ko:K02015	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JAPHLIII_02647	3.74e-120	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_02648	3.89e-210	-	-	-	GM	-	-	-	NmrA-like family
JAPHLIII_02649	2.1e-41	-	-	-	K	-	-	-	helix_turn_helix, Arsenical Resistance Operon Repressor
JAPHLIII_02650	1.17e-204	-	-	-	EGP	ko:K08221	-	ko00000,ko02000	transporter
JAPHLIII_02651	2.03e-167	-	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
JAPHLIII_02652	8.08e-96	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
JAPHLIII_02653	1.09e-186	-	-	-	IQ	-	-	-	Enoyl-(Acyl carrier protein) reductase
JAPHLIII_02654	4.51e-84	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
JAPHLIII_02655	0.0	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
JAPHLIII_02656	2.88e-231	-	-	-	S	-	-	-	Bacterial protein of unknown function (DUF916)
JAPHLIII_02657	2.38e-110	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_02658	1.69e-195	-	-	-	NU	-	-	-	Mycoplasma protein of unknown function, DUF285
JAPHLIII_02659	2.59e-32	-	-	-	NU	-	-	-	Mycoplasma protein of unknown function, DUF285
JAPHLIII_02660	1.97e-151	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_02661	0.0	lepA2	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
JAPHLIII_02662	0.0	nhaP4	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
JAPHLIII_02663	1.85e-201	-	3.6.1.22	-	L	ko:K03426	ko00760,ko01100,ko04146,map00760,map01100,map04146	ko00000,ko00001,ko01000	NADH pyrophosphatase zinc ribbon domain
JAPHLIII_02664	1.16e-209	-	-	-	K	-	-	-	LysR substrate binding domain
JAPHLIII_02665	0.0	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
JAPHLIII_02666	0.0	-	-	-	S	-	-	-	MucBP domain
JAPHLIII_02668	9.82e-111	dps	-	-	P	ko:K04047	-	ko00000,ko03036	Belongs to the Dps family
JAPHLIII_02669	1.9e-148	-	-	-	K	ko:K03489	-	ko00000,ko03000	UTRA
JAPHLIII_02670	0.0	bglA	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_02671	0.0	celD	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_02672	2.83e-83	-	-	-	-	-	-	-	-
JAPHLIII_02673	5.15e-16	-	-	-	-	-	-	-	-
JAPHLIII_02674	5.61e-54	pcaC	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Carboxymuconolactone decarboxylase family
JAPHLIII_02675	3.41e-31	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
JAPHLIII_02676	3.46e-84	-	-	-	S	-	-	-	Protein of unknown function (DUF1093)
JAPHLIII_02677	2.23e-279	-	-	-	S	-	-	-	Membrane
JAPHLIII_02678	1.04e-59	-	-	-	S	-	-	-	Protein of unknown function (DUF3781)
JAPHLIII_02679	5.35e-139	yoaZ	-	-	S	-	-	-	intracellular protease amidase
JAPHLIII_02680	1.35e-55	-	-	-	K	-	-	-	HxlR-like helix-turn-helix
JAPHLIII_02681	2.45e-77	-	-	-	-	-	-	-	-
JAPHLIII_02682	2.06e-81	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter
JAPHLIII_02683	5.31e-66	-	-	-	K	-	-	-	Helix-turn-helix domain
JAPHLIII_02684	1.83e-259	-	-	-	C	-	-	-	Belongs to the LDH2 MDH2 oxidoreductase family
JAPHLIII_02685	6.27e-104	-	-	CBM50	NU	ko:K02395,ko:K19223	-	ko00000,ko01000,ko01002,ko01011,ko02035	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
JAPHLIII_02686	5.68e-155	yciB	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
JAPHLIII_02687	6.62e-141	-	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
JAPHLIII_02688	1.93e-139	-	-	-	GM	-	-	-	NAD(P)H-binding
JAPHLIII_02689	5.35e-102	-	-	-	GM	-	-	-	SnoaL-like domain
JAPHLIII_02690	0.0	qacA	-	-	EGP	-	-	-	Fungal trichothecene efflux pump (TRI12)
JAPHLIII_02691	2.52e-85	-	-	-	S	-	-	-	Domain of unknown function (DUF4440)
JAPHLIII_02692	6.49e-135	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_02693	5.39e-25	-	-	-	L	-	-	-	HTH-like domain
JAPHLIII_02694	1.06e-39	-	-	-	L	-	-	-	Integrase core domain
JAPHLIII_02695	9.58e-06	-	-	-	L	ko:K07483	-	ko00000	transposase activity
JAPHLIII_02696	8.53e-45	-	-	-	L	ko:K07483	-	ko00000	transposase activity
JAPHLIII_02700	2.25e-51	-	-	-	G	-	-	-	SIS domain
JAPHLIII_02701	8.66e-42	-	-	-	G	-	-	-	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
JAPHLIII_02702	1.11e-38	-	2.7.1.200	-	G	ko:K02774	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
JAPHLIII_02703	1.07e-256	-	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	system Galactitol-specific IIC component
JAPHLIII_02704	9.46e-91	-	-	-	G	-	-	-	Ribose/Galactose Isomerase
JAPHLIII_02705	1.81e-92	-	-	-	K	ko:K02081	-	ko00000,ko03000	DeoR C terminal sensor domain
JAPHLIII_02706	4.9e-118	-	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl-(Acyl carrier protein) reductase
JAPHLIII_02707	5.92e-78	-	5.3.1.27	-	G	ko:K08094	ko00030,ko00680,ko01100,ko01120,ko01200,ko01230,map00030,map00680,map01100,map01120,map01200,map01230	ko00000,ko00001,ko00002,ko01000	SIS domain
JAPHLIII_02708	9.59e-108	-	-	-	G	-	-	-	Belongs to the ribulose-phosphate 3-epimerase family
JAPHLIII_02709	5.3e-215	-	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
JAPHLIII_02710	8.96e-35	-	2.7.1.200	-	G	ko:K02774	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
JAPHLIII_02711	1.81e-55	pts36A	2.7.1.200	-	G	ko:K02773	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
JAPHLIII_02712	1.34e-219	-	-	-	GKT	-	-	-	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
JAPHLIII_02713	8.74e-50	-	-	-	GM	-	-	-	NAD(P)H-binding
JAPHLIII_02714	9.71e-47	-	-	-	-	-	-	-	-
JAPHLIII_02715	1.56e-143	-	-	-	Q	-	-	-	Methyltransferase domain
JAPHLIII_02716	4.22e-41	gpmA	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JAPHLIII_02720	3.17e-180	int3	-	-	L	-	-	-	Phage integrase SAM-like domain
JAPHLIII_02722	1.11e-55	-	-	-	-	-	-	-	-
JAPHLIII_02723	1.42e-100	-	-	-	-	-	-	-	-
JAPHLIII_02725	5.58e-37	-	-	-	-	-	-	-	-
JAPHLIII_02726	4.56e-35	-	-	-	S	-	-	-	Mor transcription activator family
JAPHLIII_02727	7.57e-15	-	-	-	-	-	-	-	-
JAPHLIII_02730	3.88e-57	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
JAPHLIII_02731	1.35e-75	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
JAPHLIII_02732	2.31e-73	-	-	-	L	-	-	-	Helix-turn-helix domain
JAPHLIII_02733	1.06e-67	int3	-	-	L	-	-	-	Phage integrase SAM-like domain
JAPHLIII_02735	1.04e-146	-	-	-	S	ko:K06919	-	ko00000	Phage plasmid primase, P4
JAPHLIII_02742	3.53e-78	-	-	-	S	-	-	-	EcsC protein family
JAPHLIII_02743	2.47e-171	-	-	-	S	-	-	-	Protease prsW family
JAPHLIII_02744	8.95e-42	-	-	-	-	-	-	-	-
JAPHLIII_02745	5.06e-168	gpmA	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JAPHLIII_02746	9.26e-233	ydbI	-	-	K	-	-	-	AI-2E family transporter
JAPHLIII_02747	6.71e-244	xylR	-	-	GK	-	-	-	ROK family
JAPHLIII_02748	5.21e-151	-	-	-	-	-	-	-	-
JAPHLIII_02749	3.66e-295	cfa	2.1.1.79	-	M	ko:K00574	-	ko00000,ko01000	cyclopropane-fatty-acyl-phospholipid synthase
JAPHLIII_02750	5.74e-211	-	-	-	-	-	-	-	-
JAPHLIII_02751	2.27e-257	pkn2	-	-	KLT	-	-	-	Protein tyrosine kinase
JAPHLIII_02752	9.58e-35	-	-	-	S	-	-	-	Protein of unknown function (DUF4064)
JAPHLIII_02753	2.47e-125	-	-	-	S	-	-	-	Domain of unknown function (DUF4352)
JAPHLIII_02754	9.69e-99	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
JAPHLIII_02755	5.01e-71	-	-	-	-	-	-	-	-
JAPHLIII_02756	3.37e-141	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
JAPHLIII_02757	5.93e-73	-	-	-	S	-	-	-	branched-chain amino acid
JAPHLIII_02758	2.05e-167	-	-	-	E	-	-	-	branched-chain amino acid
JAPHLIII_02759	1.66e-116	ywnH	2.3.1.183	-	M	ko:K03823	ko00440,ko01130,map00440,map01130	ko00000,ko00001,ko01000	Acetyltransferase (GNAT) domain
JAPHLIII_02760	5.36e-305	dacA	3.4.16.4	-	M	ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
JAPHLIII_02761	5.61e-273	hpk31	-	-	T	-	-	-	Histidine kinase
JAPHLIII_02762	1.14e-159	vanR	-	-	K	-	-	-	response regulator
JAPHLIII_02763	2.4e-161	-	-	-	S	-	-	-	Protein of unknown function (DUF1275)
JAPHLIII_02764	3.84e-207	prsA	5.2.1.8	-	M	ko:K01802,ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
JAPHLIII_02765	3.49e-270	guaB	1.1.1.205	-	F	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
JAPHLIII_02766	3.49e-160	-	-	-	S	-	-	-	Protein of unknown function (DUF1129)
JAPHLIII_02767	2.68e-254	ychF	-	-	J	ko:K06942	-	ko00000,ko03009	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
JAPHLIII_02768	1.4e-40	yyzM	-	-	S	-	-	-	Bacterial protein of unknown function (DUF951)
JAPHLIII_02769	8.71e-202	spo0J	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
JAPHLIII_02770	1.01e-175	soj	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	Sporulation initiation inhibitor
JAPHLIII_02771	7.39e-192	noc	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
JAPHLIII_02772	4.27e-167	rsmG	2.1.1.170	-	J	ko:K03501	-	ko00000,ko01000,ko03009,ko03036	Specifically methylates the N7 position of a guanine in 16S rRNA
JAPHLIII_02773	1.66e-288	nupG	-	-	F	ko:K16323	-	ko00000,ko02000	Nucleoside
JAPHLIII_02774	0.0	yfhO	-	-	S	-	-	-	Bacterial membrane protein YfhO
JAPHLIII_02775	2.47e-187	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
JAPHLIII_02776	1.37e-215	-	-	-	K	-	-	-	LysR substrate binding domain
JAPHLIII_02777	4.87e-301	-	-	-	EK	-	-	-	Aminotransferase, class I
JAPHLIII_02778	1.11e-169	fliY	-	-	ET	ko:K02030,ko:K02424	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko02035	Belongs to the bacterial solute-binding protein 3 family
JAPHLIII_02779	2.11e-158	tcyB	-	-	E	ko:K10009	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_02780	3.02e-176	-	-	-	E	ko:K10010	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02781	8.12e-174	tcyA	-	-	ET	ko:K02424	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko02035	Belongs to the bacterial solute-binding protein 3 family
JAPHLIII_02782	7.25e-126	-	-	-	KT	-	-	-	response to antibiotic
JAPHLIII_02783	1.72e-69	-	-	-	K	ko:K10947	-	ko00000,ko03000	Transcriptional regulator
JAPHLIII_02784	1.73e-132	-	-	-	S	-	-	-	Protein of unknown function (DUF1700)
JAPHLIII_02785	2.48e-204	-	-	-	S	-	-	-	Putative adhesin
JAPHLIII_02786	0.0	pts26BCA	2.7.1.211	-	G	ko:K02808,ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
JAPHLIII_02787	0.0	malL	3.2.1.20	GH31	G	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
JAPHLIII_02788	2.6e-233	purR2	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding proteins and sugar binding domain of LacI family
JAPHLIII_02789	7.52e-263	-	-	-	S	-	-	-	DUF218 domain
JAPHLIII_02790	9.95e-165	ybbM	-	-	S	ko:K02069	-	ko00000,ko00002,ko02000	Uncharacterised protein family (UPF0014)
JAPHLIII_02791	7.19e-152	ybbL	-	-	S	ko:K02068	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
JAPHLIII_02792	0.0	rumA_1	2.1.1.190, 2.1.1.35	-	J	ko:K00557,ko:K03215	-	ko00000,ko01000,ko03009,ko03016	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JAPHLIII_02793	6.26e-101	-	-	-	-	-	-	-	-
JAPHLIII_02794	2.69e-194	qorB	1.6.5.2	-	GM	ko:K19267	ko00130,ko01110,map00130,map01110	ko00000,ko00001,ko01000	NmrA-like family
JAPHLIII_02795	3.54e-190	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
JAPHLIII_02796	3.75e-103	-	-	-	K	-	-	-	MerR family regulatory protein
JAPHLIII_02797	2.16e-199	-	-	-	GM	-	-	-	NmrA-like family
JAPHLIII_02798	0.0	pts28ABC	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
JAPHLIII_02799	5.08e-164	nth2	-	-	L	ko:K07457	-	ko00000	Base excision DNA repair protein, HhH-GPD family
JAPHLIII_02801	8.66e-130	-	-	-	S	-	-	-	NADPH-dependent FMN reductase
JAPHLIII_02802	3.43e-303	-	-	-	S	-	-	-	module of peptide synthetase
JAPHLIII_02803	4.71e-135	-	-	-	-	-	-	-	-
JAPHLIII_02804	1.55e-114	perR	-	-	P	ko:K03711,ko:K09825	-	ko00000,ko03000	Belongs to the Fur family
JAPHLIII_02805	7.43e-77	-	-	-	S	-	-	-	Enterocin A Immunity
JAPHLIII_02806	6.46e-49	-	-	-	S	-	-	-	Phospholipase_D-nuclease N-terminal
JAPHLIII_02807	7.93e-217	-	3.1.4.17, 3.1.4.53	-	S	ko:K01120,ko:K03651	ko00230,ko02025,map00230,map02025	ko00000,ko00001,ko01000	Calcineurin-like phosphoesterase
JAPHLIII_02808	2.8e-135	-	-	-	J	-	-	-	Acetyltransferase (GNAT) domain
JAPHLIII_02809	4.14e-84	lrgA	-	-	S	ko:K05338	ko02020,map02020	ko00000,ko00001,ko02000	LrgA family
JAPHLIII_02810	2.88e-164	lrgB	-	-	M	ko:K05339	ko02020,map02020	ko00000,ko00001	LrgB-like family
JAPHLIII_02811	3.84e-186	WQ51_01275	-	-	S	-	-	-	EDD domain protein, DegV family
JAPHLIII_02812	1.03e-34	-	-	-	-	-	-	-	-
JAPHLIII_02813	1.48e-152	yugP	-	-	S	ko:K06973	-	ko00000	Putative neutral zinc metallopeptidase
JAPHLIII_02814	0.0	-	1.3.99.26, 1.3.99.28, 1.3.99.29, 1.3.99.31	-	Q	ko:K10027	ko00906,ko01100,ko01110,map00906,map01100,map01110	ko00000,ko00001,ko01000	Flavin containing amine oxidoreductase
JAPHLIII_02815	1.04e-212	crtM	2.5.1.32, 2.5.1.99	-	I	ko:K02291	ko00906,ko01062,ko01100,ko01110,map00906,map01062,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	Squalene/phytoene synthase
JAPHLIII_02816	4.68e-235	-	-	-	D	ko:K06889	-	ko00000	Alpha beta
JAPHLIII_02817	5.81e-251	glxK	2.7.1.165	-	G	ko:K00865	ko00260,ko00561,ko00630,ko01100,ko01120,ko01130,map00260,map00561,map00630,map01100,map01120,map01130	ko00000,ko00001,ko01000	Belongs to the glycerate kinase type-1 family
JAPHLIII_02818	0.0	gshR3	1.8.1.7	-	C	ko:K00383	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Glutathione reductase
JAPHLIII_02819	1.02e-72	-	-	-	S	-	-	-	Enterocin A Immunity
JAPHLIII_02820	7.41e-315	purB	4.3.2.2	-	F	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JAPHLIII_02821	0.0	purA	6.3.4.4	-	F	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JAPHLIII_02822	7.21e-236	guaC	1.7.1.7	-	F	ko:K00364	ko00230,map00230	ko00000,ko00001,ko01000	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
JAPHLIII_02823	1.45e-187	ptp2	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
JAPHLIII_02824	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JAPHLIII_02826	1.88e-106	-	-	-	-	-	-	-	-
JAPHLIII_02827	0.0	yhdG	-	-	E	ko:K03294	-	ko00000	C-terminus of AA_permease
JAPHLIII_02829	0.0	kup	-	-	P	ko:K03549	-	ko00000,ko02000	Transport of potassium into the cell
JAPHLIII_02830	1.07e-211	yeaB	-	-	P	-	-	-	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JAPHLIII_02831	1.54e-228	ydbI	-	-	K	-	-	-	AI-2E family transporter
JAPHLIII_02832	1.01e-277	metE	2.1.1.14	-	E	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	methionine synthase, vitamin-B12 independent
JAPHLIII_02833	1.15e-77	-	-	-	P	ko:K03297	-	ko00000,ko02000	Small Multidrug Resistance protein
JAPHLIII_02834	1.97e-60	qacH	-	-	U	ko:K03297	-	ko00000,ko02000	Small Multidrug Resistance protein
JAPHLIII_02835	2.94e-149	hlyIII	-	-	S	ko:K11068	-	ko00000,ko02042	protein, hemolysin III
JAPHLIII_02836	7.27e-73	-	-	-	K	ko:K21903	-	ko00000,ko03000	helix_turn_helix, Arsenical Resistance Operon Repressor
JAPHLIII_02837	2.16e-206	czcD	-	-	P	ko:K16264	-	ko00000,ko02000	cation diffusion facilitator family transporter
JAPHLIII_02838	6.62e-133	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
JAPHLIII_02840	8.03e-28	-	-	-	-	-	-	-	-
JAPHLIII_02841	1.59e-123	tag2	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	glycosylase
JAPHLIII_02842	2.28e-270	folP	2.5.1.15	-	H	ko:K00796	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	dihydropteroate synthase
JAPHLIII_02843	2.16e-131	folQ	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Ham1 family
JAPHLIII_02844	9.16e-317	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
JAPHLIII_02845	1.8e-134	folE	2.7.6.3, 3.5.4.16	-	F	ko:K00950,ko:K01495	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	GTP cyclohydrolase 1
JAPHLIII_02846	1.59e-121	folK	2.7.6.3	-	H	ko:K00950	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
JAPHLIII_02847	9.61e-84	folB	1.13.11.81, 4.1.2.25, 5.1.99.8	-	H	ko:K01633	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JAPHLIII_02848	4.26e-109	cvpA	-	-	S	-	-	-	Colicin V production protein
JAPHLIII_02849	5.61e-216	-	-	-	P	ko:K02077	-	ko00000,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
JAPHLIII_02850	8.83e-317	-	-	-	EGP	-	-	-	Major Facilitator
JAPHLIII_02852	1.3e-53	-	-	-	-	-	-	-	-
JAPHLIII_02853	1.35e-55	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
JAPHLIII_02854	2.16e-124	-	-	-	V	-	-	-	VanZ like family
JAPHLIII_02855	1.87e-249	-	-	-	V	-	-	-	Beta-lactamase
JAPHLIII_02856	0.0	pflB	2.3.1.54	-	C	ko:K00656	ko00620,ko00640,ko00650,ko01100,ko01120,map00620,map00640,map00650,map01100,map01120	ko00000,ko00001,ko01000	Pyruvate formate lyase-like
JAPHLIII_02857	1.12e-206	pflA	1.97.1.4	-	C	ko:K04069	-	ko00000,ko01000	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JAPHLIII_02858	8.93e-71	-	-	-	S	-	-	-	Pfam:DUF59
JAPHLIII_02859	7.39e-224	ydhF	-	-	S	-	-	-	Aldo keto reductase
JAPHLIII_02860	2.42e-127	-	-	-	FG	-	-	-	HIT domain
JAPHLIII_02861	5.09e-51	-	-	-	S	-	-	-	Bacteriocin-protection, YdeI or OmpD-Associated
JAPHLIII_02862	4.29e-101	-	-	-	-	-	-	-	-
JAPHLIII_02863	1.3e-157	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase family
JAPHLIII_02864	0.0	-	-	-	U	ko:K03451	-	ko00000	Belongs to the BCCT transporter (TC 2.A.15) family
JAPHLIII_02865	0.0	cadA	-	-	P	-	-	-	P-type ATPase
JAPHLIII_02867	8.09e-161	-	-	-	S	-	-	-	YjbR
JAPHLIII_02868	1.01e-154	-	-	-	L	-	-	-	PFAM transposase IS116 IS110 IS902 family
JAPHLIII_02869	9.53e-285	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2325)
JAPHLIII_02870	0.0	ade	3.5.4.2	-	F	ko:K01486	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JAPHLIII_02871	7.12e-256	glmS2	-	-	M	-	-	-	SIS domain
JAPHLIII_02872	3.58e-36	-	-	-	S	-	-	-	Belongs to the LOG family
JAPHLIII_02873	0.0	nhaC	-	-	C	ko:K03315	-	ko00000,ko02000	Na H antiporter NhaC
JAPHLIII_02874	0.0	cycA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
JAPHLIII_02875	2.65e-215	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
JAPHLIII_02876	1.65e-112	pgpA	-	-	I	-	-	-	Phosphatidylglycerophosphatase A
JAPHLIII_02877	1.36e-209	-	-	-	GM	-	-	-	NmrA-like family
JAPHLIII_02878	1.24e-85	-	-	-	K	ko:K22296	-	ko00000,ko03000	Winged helix DNA-binding domain
JAPHLIII_02879	4.06e-93	spxA	-	-	P	ko:K16509	-	ko00000	ArsC family
JAPHLIII_02880	3.46e-87	yeaO	-	-	S	-	-	-	Protein of unknown function, DUF488
JAPHLIII_02881	1.7e-70	-	-	-	-	-	-	-	-
JAPHLIII_02882	4.98e-275	mutY	-	-	L	ko:K03575	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	A G-specific adenine glycosylase
JAPHLIII_02883	2.11e-82	-	-	-	-	-	-	-	-
JAPHLIII_02884	1.36e-112	-	-	-	-	-	-	-	-
JAPHLIII_02885	3.22e-103	hsp3	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
JAPHLIII_02886	2.27e-74	-	-	-	-	-	-	-	-
JAPHLIII_02887	4.79e-21	-	-	-	-	-	-	-	-
JAPHLIII_02888	3.57e-150	-	-	-	GM	-	-	-	NmrA-like family
JAPHLIII_02889	2.52e-107	-	-	-	S	ko:K02348	-	ko00000	GNAT family
JAPHLIII_02890	1.63e-203	-	-	-	EG	-	-	-	EamA-like transporter family
JAPHLIII_02891	2.66e-155	-	-	-	S	-	-	-	membrane
JAPHLIII_02892	2.55e-145	-	-	-	S	-	-	-	VIT family
JAPHLIII_02893	1.78e-242	pva2	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolases, choloylglycine hydrolase family
JAPHLIII_02894	0.0	copB	3.6.3.3, 3.6.3.4, 3.6.3.5, 3.6.3.54	-	P	ko:K01533,ko:K01534,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	P-type ATPase
JAPHLIII_02895	4.83e-98	copR	-	-	K	ko:K02171	ko01501,map01501	ko00000,ko00001,ko00002,ko01504,ko03000	Copper transport repressor CopY TcrY
JAPHLIII_02896	4.26e-54	-	-	-	-	-	-	-	-
JAPHLIII_02897	5.93e-97	-	-	-	S	-	-	-	COG NOG18757 non supervised orthologous group
JAPHLIII_02898	8.8e-315	lmrB	-	-	U	ko:K18926	-	ko00000,ko00002,ko02000	Belongs to the major facilitator superfamily
JAPHLIII_02899	8.44e-34	-	-	-	-	-	-	-	-
JAPHLIII_02900	2.55e-65	-	-	-	-	-	-	-	-
JAPHLIII_02901	2.41e-84	-	-	-	S	-	-	-	Protein of unknown function (DUF1398)
JAPHLIII_02902	0.0	-	-	-	U	-	-	-	Belongs to the purine-cytosine permease (2.A.39) family
JAPHLIII_02903	1.77e-282	mdtG	-	-	EGP	ko:K08161	-	ko00000,ko02000	Transporter, major facilitator family protein
JAPHLIII_02904	5.99e-231	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
JAPHLIII_02905	6.1e-101	-	-	-	K	-	-	-	Domain of unknown function (DUF1836)
JAPHLIII_02906	1.14e-110	-	-	-	F	-	-	-	Nucleoside 2-deoxyribosyltransferase
JAPHLIII_02907	0.0	pacL3	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	Cation transporter/ATPase, N-terminus
JAPHLIII_02908	0.0	yfkN	3.1.3.6, 3.1.4.16	-	F	ko:K01119	ko00230,ko00240,map00230,map00240	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
JAPHLIII_02909	2.8e-205	ywkB	-	-	S	ko:K07088	-	ko00000	Membrane transport protein
JAPHLIII_02910	1.36e-209	yvgN	-	-	C	-	-	-	Aldo keto reductase
JAPHLIII_02911	2.57e-171	-	-	-	S	-	-	-	Putative threonine/serine exporter
JAPHLIII_02912	2.07e-102	-	-	-	S	-	-	-	Threonine/Serine exporter, ThrE
JAPHLIII_02913	1.05e-56	-	-	-	S	-	-	-	Protein of unknown function (DUF1093)
JAPHLIII_02914	2.69e-190	uppP	3.6.1.27	-	V	ko:K06153	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
JAPHLIII_02915	5.94e-118	ymdB	-	-	S	-	-	-	Macro domain protein
JAPHLIII_02916	1.31e-123	-	-	-	K	ko:K22041	-	ko00000,ko03000	transcriptional regulator
JAPHLIII_02917	1.58e-66	-	-	-	-	-	-	-	-
JAPHLIII_02918	2.41e-212	-	-	-	S	-	-	-	Protein of unknown function (DUF1002)
JAPHLIII_02919	0.0	-	-	-	-	-	-	-	-
JAPHLIII_02920	7.89e-245	-	-	-	S	-	-	-	Bacterial protein of unknown function (DUF916)
JAPHLIII_02921	5.48e-171	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_02922	2.7e-175	yesN	-	-	T	ko:K07720	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
JAPHLIII_02923	5.33e-114	-	-	-	K	-	-	-	Winged helix DNA-binding domain
JAPHLIII_02924	8.98e-149	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
JAPHLIII_02925	0.0	pckA	4.1.1.49	-	H	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Phosphoenolpyruvate carboxykinase
JAPHLIII_02926	4.45e-38	-	-	-	-	-	-	-	-
JAPHLIII_02927	0.0	gadB	4.1.1.15, 4.1.2.27	-	E	ko:K01580,ko:K01634	ko00250,ko00410,ko00430,ko00600,ko00650,ko01100,ko01110,ko01120,ko02024,ko04071,ko04727,ko04940,map00250,map00410,map00430,map00600,map00650,map01100,map01110,map01120,map02024,map04071,map04727,map04940	ko00000,ko00001,ko00002,ko01000	Belongs to the group II decarboxylase family
JAPHLIII_02928	3.31e-106	-	-	-	M	-	-	-	PFAM NLP P60 protein
JAPHLIII_02929	4.7e-66	-	-	-	-	-	-	-	-
JAPHLIII_02930	2.35e-80	-	-	-	-	-	-	-	-
JAPHLIII_02933	5.05e-232	ywbN	-	-	P	ko:K07223,ko:K16301	-	ko00000,ko01000,ko02000	Peroxidase
JAPHLIII_02934	4.16e-175	menG	2.1.1.163, 2.1.1.201	-	H	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
JAPHLIII_02935	3.04e-165	-	-	-	S	-	-	-	Gram-negative-bacterium-type cell wall biogenesis
JAPHLIII_02936	1.45e-234	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase family
JAPHLIII_02937	0.0	cadA	3.6.3.3, 3.6.3.5	-	P	ko:K01534	-	ko00000,ko01000	P-type ATPase
JAPHLIII_02938	9.44e-183	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
JAPHLIII_02939	9.52e-72	trxA3	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Thioredoxin-like domain
JAPHLIII_02940	6.85e-55	yrkD	-	-	S	-	-	-	Metal-sensitive transcriptional repressor
JAPHLIII_02941	1.01e-26	-	-	-	-	-	-	-	-
JAPHLIII_02942	2.03e-124	dpsB	-	-	P	-	-	-	Belongs to the Dps family
JAPHLIII_02943	2.98e-44	copZ	-	-	P	-	-	-	Heavy-metal-associated domain
JAPHLIII_02944	1.82e-152	rcfA	-	-	K	ko:K21562	-	ko00000,ko03000	Transcriptional regulator, Crp Fnr family
JAPHLIII_02945	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
JAPHLIII_02946	5.23e-107	yoaA	-	-	J	-	-	-	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JAPHLIII_02947	0.0	nox	1.6.3.4	-	C	ko:K17869	-	ko00000,ko01000	NADH oxidase
JAPHLIII_02948	0.0	-	-	-	S	-	-	-	Leucine-rich repeat (LRR) protein
JAPHLIII_02949	1.83e-235	-	-	-	S	-	-	-	Cell surface protein
JAPHLIII_02950	8.67e-160	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_02951	4.23e-129	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
JAPHLIII_02952	6.45e-59	-	-	-	-	-	-	-	-
JAPHLIII_02953	1.72e-135	yezE	-	-	K	ko:K16137	-	ko00000,ko03000	Bacterial regulatory proteins, tetR family
JAPHLIII_02954	1.03e-65	-	-	-	-	-	-	-	-
JAPHLIII_02955	9.34e-317	-	-	-	S	-	-	-	Putative metallopeptidase domain
JAPHLIII_02956	4.03e-283	-	-	-	S	-	-	-	associated with various cellular activities
JAPHLIII_02957	1.95e-140	aqpZ	-	-	U	ko:K06188	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
JAPHLIII_02958	0.0	ubiB	-	-	S	ko:K03688	-	ko00000	ABC1 family
JAPHLIII_02959	0.0	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
JAPHLIII_02960	0.0	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
JAPHLIII_02961	0.0	lacA	3.2.1.23	-	G	ko:K12308	ko00052,map00052	ko00000,ko00001,ko01000	-beta-galactosidase
JAPHLIII_02962	4.73e-242	lacR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
JAPHLIII_02963	0.0	-	3.2.1.40	-	G	ko:K05989	-	ko00000,ko01000	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
JAPHLIII_02964	2.49e-294	-	-	-	P	ko:K06610	-	ko00000,ko02000	Sugar (and other) transporter
JAPHLIII_02965	0.0	ram2	3.2.1.40	-	G	ko:K05989	-	ko00000,ko01000	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
JAPHLIII_02966	5.06e-298	-	-	-	P	ko:K06610	-	ko00000,ko02000	Major Facilitator Superfamily
JAPHLIII_02967	1.29e-235	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
JAPHLIII_02968	1.31e-128	fic	-	-	D	ko:K04095	-	ko00000,ko03036	Fic/DOC family
JAPHLIII_02969	2.8e-99	-	-	-	K	ko:K07726	-	ko00000,ko03000	Helix-turn-helix XRE-family like proteins
JAPHLIII_02970	1.19e-234	galR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
JAPHLIII_02971	0.0	galT	2.7.7.12	-	G	ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	ko00000,ko00001,ko00002,ko01000	UDP-glucose--hexose-1-phosphate uridylyltransferase
JAPHLIII_02972	5.14e-245	galE	5.1.3.2	-	M	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family
JAPHLIII_02973	1.65e-286	galK	2.7.1.6	-	F	ko:K00849	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JAPHLIII_02974	0.0	lacL	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
JAPHLIII_02975	1.16e-238	lacM	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	beta-galactosidase
JAPHLIII_02976	0.0	melA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
JAPHLIII_02977	0.0	lacP	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
JAPHLIII_02978	1.94e-249	galM3	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of alpha and beta anomers of maltose
JAPHLIII_02979	3.69e-232	galR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
JAPHLIII_02980	8.93e-249	tas3	-	-	C	ko:K19265	-	ko00000,ko01000	Aldo keto reductase family protein
JAPHLIII_02981	2.02e-85	-	-	-	S	-	-	-	pyridoxamine 5-phosphate
JAPHLIII_02982	0.0	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
JAPHLIII_02983	4.42e-222	apbE3	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
JAPHLIII_02984	2.36e-168	aroD	4.2.1.10	-	E	ko:K03785	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate
JAPHLIII_02985	4.63e-275	-	-	-	G	-	-	-	Transporter
JAPHLIII_02986	1.66e-215	aroE	1.1.1.25	-	E	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JAPHLIII_02987	1.36e-207	-	-	-	K	-	-	-	Transcriptional regulator, LysR family
JAPHLIII_02988	4.74e-268	-	-	-	G	-	-	-	Major Facilitator Superfamily
JAPHLIII_02989	2.09e-83	-	-	-	-	-	-	-	-
JAPHLIII_02990	2.63e-200	estA	-	-	S	-	-	-	Putative esterase
JAPHLIII_02991	5.44e-174	-	-	-	K	-	-	-	UTRA domain
JAPHLIII_02992	0.0	pts29C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
JAPHLIII_02993	3.06e-212	murQ	4.2.1.126	-	G	ko:K07106	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
JAPHLIII_02994	1.58e-207	-	-	-	G	-	-	-	BadF/BadG/BcrA/BcrD ATPase family
JAPHLIII_02995	1.94e-270	-	-	-	S	ko:K09963	-	ko00000	Bacterial protein of unknown function (DUF871)
JAPHLIII_02996	0.0	bglH	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_02997	0.0	bglP	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
JAPHLIII_02998	3.72e-200	bglG4	-	-	K	ko:K03488	-	ko00000,ko03000	CAT RNA binding domain
JAPHLIII_02999	0.0	pbg9	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_03000	4.59e-12	-	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	NADH flavin oxidoreductases, Old Yellow Enzyme family
JAPHLIII_03002	1.96e-224	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
JAPHLIII_03003	5.25e-135	-	6.2.1.3, 6.2.1.48	-	H	ko:K00666,ko:K01897,ko:K02182	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily
JAPHLIII_03004	8.28e-47	etfA	-	-	C	ko:K03522	-	ko00000,ko04147	Electron transfer flavoprotein FAD-binding domain
JAPHLIII_03005	7.87e-20	etfB	-	-	C	ko:K03521	-	ko00000	Electron transfer flavoprotein domain
JAPHLIII_03006	6.3e-189	-	1.3.8.1, 1.3.8.6	-	I	ko:K00248,ko:K00252,ko:K18244	ko00071,ko00280,ko00310,ko00362,ko00380,ko00650,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00310,map00362,map00380,map00650,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Acyl-CoA dehydrogenase, C-terminal domain
JAPHLIII_03007	7.38e-214	frc	2.8.3.16	-	C	ko:K07749	-	ko00000,ko01000	Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate
JAPHLIII_03008	1.29e-236	-	-	-	I	-	-	-	Acyl-CoA dehydrogenase, C-terminal domain
JAPHLIII_03009	4.71e-172	-	-	-	G	ko:K08177	-	ko00000,ko02000	Major Facilitator Superfamily
JAPHLIII_03010	4.1e-70	-	-	-	K	-	-	-	Transcriptional regulator, LysR family
JAPHLIII_03011	0.0	bglH	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_03012	0.0	pts33BCA	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
JAPHLIII_03013	1.3e-203	bglG5	-	-	K	ko:K03488	-	ko00000,ko03000	CAT RNA binding domain
JAPHLIII_03014	0.0	treP	2.4.1.64	GH65	G	ko:K05342	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	hydrolase, family 65, central catalytic
JAPHLIII_03015	2.66e-222	cytR	-	-	K	ko:K02529,ko:K03604	-	ko00000,ko03000	Transcriptional regulator, LacI family
JAPHLIII_03016	0.0	-	-	-	G	ko:K16211	-	ko00000,ko02000	Major Facilitator
JAPHLIII_03017	0.0	agl	3.2.1.20	GH31	G	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 31 family
JAPHLIII_03019	4.89e-238	cbh	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
JAPHLIII_03020	1.1e-187	yxeH	-	-	S	-	-	-	hydrolase
JAPHLIII_03021	0.0	tkt	2.2.1.1	-	H	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JAPHLIII_03022	7.45e-150	tal	2.2.1.2	-	F	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JAPHLIII_03023	2.47e-307	ulaA	-	-	S	ko:K03475	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
JAPHLIII_03024	7.29e-61	ulaB	2.7.1.194	-	G	ko:K02822	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphotransferase system galactitol-specific IIB component
JAPHLIII_03025	1.58e-101	-	2.7.1.194	-	G	ko:K02821	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
JAPHLIII_03026	0.0	-	-	-	G	ko:K03483	-	ko00000,ko03000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
JAPHLIII_03027	4.53e-146	gph3	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
JAPHLIII_03028	2.12e-246	-	1.1.1.14	-	C	ko:K00008	ko00040,ko00051,ko01100,map00040,map00051,map01100	ko00000,ko00001,ko00002,ko01000	Zinc-binding dehydrogenase
JAPHLIII_03029	2.53e-141	-	1.1.1.14	-	E	ko:K00008	ko00040,ko00051,ko01100,map00040,map00051,map01100	ko00000,ko00001,ko00002,ko01000	Alcohol dehydrogenase GroES-like domain
JAPHLIII_03030	9.65e-246	gatC	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
JAPHLIII_03031	8.53e-47	-	2.7.1.200	-	G	ko:K02774	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
JAPHLIII_03032	4.04e-72	-	2.7.1.200, 2.7.1.204	-	G	ko:K02773,ko:K20112	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
JAPHLIII_03033	2.07e-115	-	-	-	K	ko:K02444	-	ko00000,ko03000	DeoR C terminal sensor domain
JAPHLIII_03034	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
JAPHLIII_03035	1.73e-93	-	-	-	S	-	-	-	Protein of unknown function (DUF1694)
JAPHLIII_03036	3.95e-132	maa	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Maltose O-acetyltransferase
JAPHLIII_03037	0.0	araA	5.3.1.4	-	G	ko:K01804	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of L-arabinose to L-ribulose
JAPHLIII_03038	6.13e-175	araD	5.1.3.4	-	G	ko:K03077	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
JAPHLIII_03039	0.0	araB	2.7.1.16	-	G	ko:K00853	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko01000	carbohydrate kinase FGGY
JAPHLIII_03040	0.0	araP	-	-	U	-	-	-	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
JAPHLIII_03041	1.2e-262	araR	-	-	K	ko:K02103	-	ko00000,ko03000	Transcriptional regulator
JAPHLIII_03042	3.76e-180	-	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
JAPHLIII_03043	6.47e-95	-	-	-	S	-	-	-	Protein of unknown function (DUF1694)
JAPHLIII_03044	2.54e-210	-	-	-	I	-	-	-	alpha/beta hydrolase fold
JAPHLIII_03045	9.55e-206	-	-	-	I	-	-	-	alpha/beta hydrolase fold
JAPHLIII_03046	0.0	-	-	-	E	ko:K03307	-	ko00000	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JAPHLIII_03047	4.01e-263	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
JAPHLIII_03048	3.83e-174	-	-	-	G	-	-	-	Xylose isomerase domain protein TIM barrel
JAPHLIII_03049	2.93e-200	nanK	-	-	GK	-	-	-	ROK family
JAPHLIII_03050	1.86e-210	nanA	4.1.3.3	-	EM	ko:K01639	ko00520,map00520	ko00000,ko00001,ko01000	Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate
JAPHLIII_03051	1.82e-160	nanE	5.1.3.9	-	G	ko:K01788	ko00520,map00520	ko00000,ko00001,ko01000	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
JAPHLIII_03052	2.18e-289	-	-	-	S	-	-	-	Pyridine nucleotide-disulphide oxidoreductase
JAPHLIII_03053	2.43e-91	-	-	-	S	-	-	-	Pyrimidine dimer DNA glycosylase
JAPHLIII_03054	2.1e-116	-	-	-	T	-	-	-	ECF transporter, substrate-specific component
JAPHLIII_03055	1.76e-15	-	-	-	-	-	-	-	-
JAPHLIII_03056	1.96e-21	ytgB	-	-	S	-	-	-	Transglycosylase associated protein
JAPHLIII_03057	0.0	katA	1.11.1.6	-	C	ko:K03781	ko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014	ko00000,ko00001,ko00002,ko01000	Belongs to the catalase family
JAPHLIII_03058	1.32e-101	nrp	-	-	K	ko:K16509	-	ko00000	ArsC family
JAPHLIII_03059	4.29e-173	-	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
JAPHLIII_03060	3.78e-212	blpH	2.7.13.3	-	T	ko:K07706	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	GHKL domain
JAPHLIII_03061	9.62e-19	-	-	-	-	-	-	-	-
JAPHLIII_03062	1.51e-85	-	-	-	KOT	ko:K07813	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko01002	May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor
JAPHLIII_03063	0.0	clpL	-	-	O	ko:K04086	-	ko00000,ko03110	C-terminal, D2-small domain, of ClpB protein
JAPHLIII_03065	1.97e-256	lctO	1.13.12.4	-	C	ko:K00467,ko:K10530	ko00620,map00620	ko00000,ko00001,ko01000	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
JAPHLIII_03066	0.0	pox4	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
JAPHLIII_03067	5.03e-95	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_03068	0.0	spxB	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
JAPHLIII_03069	1.65e-93	yueI	-	-	S	-	-	-	Protein of unknown function (DUF1694)
JAPHLIII_03070	1.45e-162	-	-	-	S	-	-	-	Membrane
JAPHLIII_03071	1.31e-210	rhaD	4.1.2.19	-	H	ko:K01629	ko00040,ko00051,ko01120,map00040,map00051,map01120	ko00000,ko00001,ko01000	Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde
JAPHLIII_03072	0.0	rhaA	2.7.1.5, 5.3.1.14	-	G	ko:K00848,ko:K01813	ko00040,ko00051,ko01120,map00040,map00051,map01120	ko00000,ko00001,ko01000	L-rhamnose isomerase (RhaA)
JAPHLIII_03073	4.22e-74	rhaM	5.1.3.32	-	G	ko:K03534	-	ko00000,ko01000	Involved in the anomeric conversion of L-rhamnose
JAPHLIII_03074	0.0	rhaB	2.7.1.5	-	F	ko:K00848	ko00040,ko00051,ko01120,map00040,map00051,map01120	ko00000,ko00001,ko01000	Involved in the catabolism of L-rhamnose (6-deoxy-L- mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1-hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate
JAPHLIII_03075	1.63e-314	iolF	-	-	P	ko:K06610	-	ko00000,ko02000	Sugar (and other) transporter
JAPHLIII_03076	8.35e-230	rhaR	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
JAPHLIII_03077	1.28e-180	-	-	-	K	-	-	-	DeoR C terminal sensor domain
JAPHLIII_03078	3.71e-105	pts36A	2.7.1.200	-	G	ko:K02773	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
JAPHLIII_03079	2.47e-68	-	2.7.1.200	-	G	ko:K02774	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
JAPHLIII_03080	0.0	pts36C	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
JAPHLIII_03082	1.45e-172	-	4.1.2.17	-	G	ko:K01628	ko00051,ko01120,map00051,map01120	ko00000,ko00001,ko01000	Class II Aldolase and Adducin N-terminal domain
JAPHLIII_03083	0.0	-	-	-	EGP	-	-	-	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
JAPHLIII_03084	1.01e-252	iolG2	1.1.1.18, 1.1.1.369	-	S	ko:K00010	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130	ko00000,ko00001,ko01000	Oxidoreductase family, C-terminal alpha/beta domain
JAPHLIII_03085	2.4e-258	iolG	1.1.1.18, 1.1.1.369	-	C	ko:K00010	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130	ko00000,ko00001,ko01000	Involved in the oxidation of myo-inositol (MI) and D- chiro-inositol (DCI) to 2-keto-myo-inositol (2KMI or 2-inosose) and 1-keto-D-chiro-inositol (1KDCI), respectively
JAPHLIII_03086	3.39e-226	iolE	4.2.1.44	-	G	ko:K03335	ko00562,ko01100,ko01120,map00562,map01100,map01120	ko00000,ko00001,ko01000	Catalyzes the dehydration of inosose (2-keto-myo- inositol, 2KMI or 2,4,6 3,5-pentahydroxycyclohexanone) to 3D- (3,5 4)-trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi- inositol)
JAPHLIII_03087	6.56e-252	idhA	1.1.1.18, 1.1.1.369	-	S	ko:K00010	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130	ko00000,ko00001,ko01000	Oxidoreductase family, C-terminal alpha/beta domain
JAPHLIII_03088	0.0	iolT	-	-	EGP	ko:K06609	-	ko00000,ko02000	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
JAPHLIII_03089	1.87e-246	-	1.1.1.18, 1.1.1.361, 1.1.1.369	-	S	ko:K00010,ko:K18652	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130	ko00000,ko00001,ko01000	Oxidoreductase family, C-terminal alpha/beta domain
JAPHLIII_03090	7.45e-108	-	-	-	S	-	-	-	Haem-degrading
JAPHLIII_03091	1.6e-220	-	-	-	C	-	-	-	Alcohol dehydrogenase GroES-like domain
JAPHLIII_03092	1.96e-224	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
JAPHLIII_03093	1.44e-228	-	-	-	F	ko:K01250	-	ko00000,ko01000	Inosine-uridine preferring nucleoside hydrolase
JAPHLIII_03094	1.69e-148	-	-	-	L	ko:K07482	-	ko00000	PFAM Integrase, catalytic core
JAPHLIII_03095	5.31e-82	pts38A	2.7.1.198	-	G	ko:K02781	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system glucitol/sorbitol-specific IIA component
JAPHLIII_03096	5.39e-228	srlE	2.7.1.198	-	G	ko:K02782,ko:K02783	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Sorbitol phosphotransferase enzyme II N-terminus
JAPHLIII_03097	1.88e-131	srlA	-	-	G	ko:K02783	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko02000	PTS system enzyme II sorbitol-specific factor
JAPHLIII_03098	4.71e-119	srlM1	-	-	K	-	-	-	Glucitol operon activator protein (GutM)
JAPHLIII_03099	0.0	srlM	-	-	GKT	ko:K03491	-	ko00000,ko03000	Mga helix-turn-helix domain
JAPHLIII_03100	5.18e-186	srlD	1.1.1.140	-	IQ	ko:K00068	ko00051,map00051	ko00000,ko00001,ko01000	NAD dependent epimerase/dehydratase family
JAPHLIII_03101	0.0	bgl	3.2.1.21, 3.2.1.86	GT1	G	ko:K01223,ko:K05350	ko00010,ko00460,ko00500,ko00940,ko01100,ko01110,map00010,map00460,map00500,map00940,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
JAPHLIII_03102	1.4e-205	ypbG	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	ROK family
JAPHLIII_03103	0.0	-	2.3.1.204, 3.2.1.170, 3.2.1.24	GH38	G	ko:K01191,ko:K15524,ko:K16869	ko00511,map00511	ko00000,ko00001,ko01000,ko04131	Glycosyl hydrolases family 38 N-terminal domain
JAPHLIII_03104	0.0	-	-	-	S	ko:K09704	-	ko00000	Metal-independent alpha-mannosidase (GH125)
JAPHLIII_03105	2.66e-248	-	-	-	K	-	-	-	Transcriptional regulator
JAPHLIII_03106	0.0	ypdD	-	-	G	-	-	-	Glycosyl hydrolase family 92
JAPHLIII_03107	1.09e-275	msmX	-	-	P	ko:K10112	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
JAPHLIII_03108	2.18e-211	scrK	2.7.1.4	-	GK	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	ROK family
JAPHLIII_03109	0.0	-	-	-	K	ko:K07720	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	helix_turn_helix, arabinose operon control protein
JAPHLIII_03110	0.0	-	2.7.13.3	-	T	ko:K07718	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
JAPHLIII_03111	1.71e-139	ypcB	-	-	S	-	-	-	integral membrane protein
JAPHLIII_03112	0.0	dexB	3.2.1.70	-	G	ko:K01215	-	ko00000,ko01000	Alpha amylase, catalytic domain protein
JAPHLIII_03113	0.0	ypcG	-	-	G	ko:K17318	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Domain of unknown function (DUF3502)
JAPHLIII_03114	6.47e-213	lplC	-	-	U	ko:K17320	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
JAPHLIII_03115	1.29e-231	ypdA	-	-	U	ko:K17319	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
JAPHLIII_03116	0.0	-	3.2.1.52	GH20	G	ko:K12373	ko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142	ko00000,ko00001,ko00002,ko01000,ko03110	Glycosyl hydrolase family 20, catalytic domain
JAPHLIII_03117	6.69e-200	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
JAPHLIII_03118	0.0	mdlA2	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
JAPHLIII_03119	0.0	yknV	-	-	V	ko:K06147,ko:K18890	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
JAPHLIII_03120	1.48e-247	-	-	-	K	-	-	-	helix_turn_helix gluconate operon transcriptional repressor
JAPHLIII_03121	1.91e-201	lrp	-	-	QT	-	-	-	PucR C-terminal helix-turn-helix domain
JAPHLIII_03122	6.96e-83	pts38A	2.7.1.198	-	G	ko:K02781	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system glucitol/sorbitol-specific IIA component
JAPHLIII_03123	2.5e-234	srlE	2.7.1.198	-	G	ko:K02782,ko:K02783	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Sorbitol phosphotransferase enzyme II N-terminus
JAPHLIII_03124	1.23e-129	srlA	-	-	G	ko:K02783	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko02000	PTS system enzyme II sorbitol-specific factor
JAPHLIII_03125	7.84e-112	srlM1	-	-	K	-	-	-	Glucitol operon activator protein (GutM)
JAPHLIII_03126	0.0	srlM	-	-	GKT	ko:K03491	-	ko00000,ko03000	Mga helix-turn-helix domain
JAPHLIII_03127	2.21e-185	srlD2	1.1.1.140	-	IQ	ko:K00068	ko00051,map00051	ko00000,ko00001,ko01000	NAD dependent epimerase/dehydratase family
JAPHLIII_03128	2.53e-209	rbsU	-	-	U	ko:K06216	-	ko00000,ko02000	ribose uptake protein RbsU
JAPHLIII_03129	4.99e-88	rbsD	5.4.99.62	-	G	ko:K06726	ko02010,map02010	ko00000,ko00001,ko01000	Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose
JAPHLIII_03130	7.82e-210	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JAPHLIII_03131	4.04e-241	rbsR	-	-	K	ko:K02529,ko:K03484	-	ko00000,ko03000	helix_turn _helix lactose operon repressor
JAPHLIII_03132	0.0	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
JAPHLIII_03133	1.61e-215	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
JAPHLIII_03134	1.7e-32	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
JAPHLIII_03135	3.57e-103	-	-	-	T	-	-	-	Universal stress protein family
JAPHLIII_03136	7.43e-130	padR	-	-	K	-	-	-	Virulence activator alpha C-term
JAPHLIII_03137	2.71e-135	padC	-	-	Q	ko:K13727	-	ko00000,ko01000	Phenolic acid decarboxylase
JAPHLIII_03138	1.13e-182	mhpD	-	-	Q	ko:K02509	ko00350,ko01120,map00350,map01120	ko00000,ko00001,ko01000	hydratase
JAPHLIII_03139	3.66e-113	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
JAPHLIII_03140	4.02e-203	degV1	-	-	S	-	-	-	DegV family
JAPHLIII_03141	9.67e-79	-	-	-	K	-	-	-	Bacteriophage CI repressor helix-turn-helix domain
JAPHLIII_03142	0.0	pepE	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
JAPHLIII_03144	1.12e-140	sip3	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
JAPHLIII_03145	0.0	-	-	-	-	-	-	-	-
JAPHLIII_03147	2.23e-211	-	-	-	S	-	-	-	Bacterial protein of unknown function (DUF916)
JAPHLIII_03148	1.31e-143	-	-	-	S	-	-	-	Cell surface protein
JAPHLIII_03149	0.0	gidA	-	-	D	ko:K03495	-	ko00000,ko03016,ko03036	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
JAPHLIII_03150	0.0	mnmE	-	-	S	ko:K03650	-	ko00000,ko01000,ko03016	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JAPHLIII_03151	2.37e-173	jag	-	-	S	ko:K06346	-	ko00000	R3H domain protein
JAPHLIII_03152	2.26e-306	-	-	-	Q	-	-	-	Imidazolonepropionase and related amidohydrolases
JAPHLIII_03153	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
JAPHLIII_03154	1.55e-158	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
JAPHLIII_03155	3.74e-75	rnpA	3.1.26.5	-	J	ko:K03536	-	ko00000,ko01000,ko03016	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme