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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	KEGG_ko	KEGG_Pathway	BRITE	Description
BOMEOGOA_00001	0.0	dnaA	-	-	L	ko:K02313	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko03032,ko03036	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BOMEOGOA_00002	4.3e-256	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
BOMEOGOA_00003	2.87e-47	yaaA	-	-	S	ko:K14761	-	ko00000,ko03009	S4 domain protein YaaA
BOMEOGOA_00004	6.26e-269	recF	-	-	L	ko:K03629	ko03440,map03440	ko00000,ko00001,ko03400	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BOMEOGOA_00005	0.0	gyrB	5.99.1.3	-	L	ko:K02470	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BOMEOGOA_00006	0.0	gyrA	5.99.1.3	-	L	ko:K02469	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BOMEOGOA_00007	1.93e-65	rpsF	-	-	J	ko:K02990	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Binds together with S18 to 16S ribosomal RNA
BOMEOGOA_00008	2.06e-109	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
BOMEOGOA_00009	5.05e-47	rpsR	-	-	J	ko:K02963	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BOMEOGOA_00010	1.05e-249	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00011	0.0	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00012	2.9e-215	-	-	-	V	-	-	-	ABC transporter transmembrane region
BOMEOGOA_00013	4.62e-251	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00015	6.74e-62	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_00016	3.94e-46	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00017	3.39e-82	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00018	0.0	yybT	-	-	T	-	-	-	signaling protein consisting of a modified GGDEF domain and a DHH domain
BOMEOGOA_00019	3.31e-98	rplI	-	-	J	ko:K02939	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
BOMEOGOA_00020	0.0	dnaB	3.6.4.12	-	L	ko:K02314	ko03030,ko04112,map03030,map04112	ko00000,ko00001,ko01000,ko03032	Participates in initiation and elongation during chromosome replication
BOMEOGOA_00021	3.91e-216	phnD	-	-	P	ko:K02044	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, phosphonate, periplasmic substrate-binding protein
BOMEOGOA_00022	2.28e-310	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00023	8.33e-227	degV1	-	-	S	-	-	-	DegV family
BOMEOGOA_00024	2.72e-186	scrK	2.7.1.4	-	GK	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	ROK family
BOMEOGOA_00025	0.000255	-	-	-	S	-	-	-	CsbD-like
BOMEOGOA_00026	5.32e-35	-	-	-	S	-	-	-	Transglycosylase associated protein
BOMEOGOA_00027	9.5e-304	-	-	-	I	-	-	-	Protein of unknown function (DUF2974)
BOMEOGOA_00028	6.27e-155	-	-	-	S	ko:K07507	-	ko00000,ko02000	MgtC family
BOMEOGOA_00031	9.96e-19	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BOMEOGOA_00032	4.34e-85	-	-	-	-	-	-	-	-
BOMEOGOA_00033	2.46e-110	-	-	-	-	-	-	-	-
BOMEOGOA_00034	4.3e-186	-	-	-	D	-	-	-	Ftsk spoiiie family protein
BOMEOGOA_00035	1.23e-185	-	-	-	S	-	-	-	Replication initiation factor
BOMEOGOA_00036	3.98e-74	-	-	-	-	-	-	-	-
BOMEOGOA_00037	1.71e-37	-	-	-	-	-	-	-	-
BOMEOGOA_00038	6.08e-300	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
BOMEOGOA_00042	1.49e-312	-	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
BOMEOGOA_00044	1.21e-40	-	-	-	K	ko:K07729	-	ko00000,ko03000	Helix-turn-helix XRE-family like proteins
BOMEOGOA_00045	4.67e-146	ybbL	-	-	S	ko:K02068	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_00046	6.76e-168	ybbM	-	-	S	ko:K02069	-	ko00000,ko00002,ko02000	Uncharacterised protein family (UPF0014)
BOMEOGOA_00047	1.1e-283	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00048	8.33e-194	-	-	-	K	ko:K09705	-	ko00000	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BOMEOGOA_00049	1.37e-28	-	-	-	K	-	-	-	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BOMEOGOA_00050	3.47e-135	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BOMEOGOA_00051	0.0	-	-	-	V	-	-	-	Restriction endonuclease
BOMEOGOA_00052	1.8e-45	-	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
BOMEOGOA_00053	2.75e-194	-	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
BOMEOGOA_00054	0.0	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00055	3.24e-309	-	-	-	S	-	-	-	LPXTG cell wall anchor motif
BOMEOGOA_00056	9.87e-193	-	-	-	S	-	-	-	Putative ABC-transporter type IV
BOMEOGOA_00057	1.09e-129	-	-	-	S	-	-	-	Cob(I)alamin adenosyltransferase
BOMEOGOA_00058	6.37e-114	-	-	-	S	ko:K16927	-	ko00000,ko00002,ko02000	ECF transporter, substrate-specific component
BOMEOGOA_00059	8.81e-89	-	-	-	S	-	-	-	Domain of unknown function (DUF4430)
BOMEOGOA_00060	0.0	rtpR	1.17.4.2	-	F	ko:K00527	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	ribonucleoside-triphosphate reductase activity
BOMEOGOA_00061	5.13e-225	ydbI	-	-	K	-	-	-	AI-2E family transporter
BOMEOGOA_00062	3.37e-135	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase
BOMEOGOA_00063	1.61e-96	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00064	5.73e-118	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00065	1.64e-149	pgm1	-	-	G	-	-	-	phosphoglycerate mutase
BOMEOGOA_00066	2.5e-263	serC	2.6.1.52	-	E	ko:K00831	ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BOMEOGOA_00067	8.7e-278	serA	1.1.1.399, 1.1.1.95	-	EH	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOMEOGOA_00068	5.81e-63	sugE	-	-	U	ko:K11741	-	ko00000,ko02000	Multidrug resistance protein
BOMEOGOA_00069	1.75e-39	-	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	Belongs to the Nudix hydrolase family
BOMEOGOA_00070	3.1e-103	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
BOMEOGOA_00071	1.48e-53	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
BOMEOGOA_00072	4.47e-178	XK27_08845	-	-	S	ko:K05833	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_00073	8.25e-169	XK27_08840	-	-	U	ko:K05832	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
BOMEOGOA_00074	3.66e-227	ABC-SBP	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
BOMEOGOA_00075	3.05e-176	ysaA	3.1.3.5, 3.8.1.2	-	S	ko:K01560,ko:K07025,ko:K08723	ko00230,ko00240,ko00361,ko00625,ko00760,ko01100,ko01110,ko01120,map00230,map00240,map00361,map00625,map00760,map01100,map01110,map01120	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
BOMEOGOA_00076	2.04e-70	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00077	4.25e-211	yvgN	-	-	C	-	-	-	Aldo keto reductase
BOMEOGOA_00078	0.0	fusA1	-	-	J	-	-	-	elongation factor G
BOMEOGOA_00079	5.95e-115	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	haloacid dehalogenase-like hydrolase
BOMEOGOA_00080	2.33e-55	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	haloacid dehalogenase-like hydrolase
BOMEOGOA_00081	1.02e-244	ldhA	1.1.1.28	-	C	ko:K03778,ko:K18347	ko00620,ko01120,ko01502,ko02020,map00620,map01120,map01502,map02020	ko00000,ko00001,ko00002,ko01000,ko01504	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOMEOGOA_00082	1.37e-215	-	-	-	G	-	-	-	Phosphotransferase enzyme family
BOMEOGOA_00083	1.03e-203	xth	3.1.11.2	-	L	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	exodeoxyribonuclease III
BOMEOGOA_00084	1.67e-173	-	-	-	E	ko:K20265	ko02024,map02024	ko00000,ko00001,ko02000	amino acid
BOMEOGOA_00085	0.0	-	-	-	L	-	-	-	Helicase C-terminal domain protein
BOMEOGOA_00086	4.6e-249	pbpX1	-	-	V	-	-	-	Beta-lactamase
BOMEOGOA_00087	7.23e-93	def2	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins
BOMEOGOA_00088	4.33e-103	-	-	-	-	-	-	-	-
BOMEOGOA_00089	1.76e-109	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
BOMEOGOA_00091	4.33e-103	-	-	-	-	-	-	-	-
BOMEOGOA_00094	1.76e-109	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
BOMEOGOA_00096	1.22e-26	-	-	-	E	-	-	-	Component of the transport system for branched-chain amino acids
BOMEOGOA_00097	1.44e-52	-	-	-	K	-	-	-	LysR substrate binding domain
BOMEOGOA_00098	3.02e-79	-	-	-	K	-	-	-	LysR substrate binding domain
BOMEOGOA_00099	3.06e-151	-	-	-	K	-	-	-	Transcriptional regulator, LysR family
BOMEOGOA_00100	8.69e-48	-	-	-	S	-	-	-	Cytochrome b5
BOMEOGOA_00101	2.65e-213	arbZ	-	-	I	-	-	-	Phosphate acyltransferases
BOMEOGOA_00102	1.59e-207	-	-	-	M	-	-	-	Glycosyl transferase family 8
BOMEOGOA_00103	1.29e-13	-	-	-	M	-	-	-	Glycosyl transferase family 8
BOMEOGOA_00104	2.62e-239	-	-	-	M	-	-	-	Glycosyl transferase family 8
BOMEOGOA_00105	7.53e-203	arbx	-	-	M	-	-	-	Glycosyl transferase family 8
BOMEOGOA_00106	2.79e-181	-	-	-	K	-	-	-	Helix-turn-helix domain
BOMEOGOA_00107	1.5e-295	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_00108	2.53e-151	-	-	-	-	-	-	-	-
BOMEOGOA_00109	6.17e-189	-	-	-	I	-	-	-	Acyl-transferase
BOMEOGOA_00110	1.18e-149	-	-	-	-	-	-	-	-
BOMEOGOA_00111	1.1e-102	-	-	-	E	-	-	-	Zn peptidase
BOMEOGOA_00112	8.23e-81	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BOMEOGOA_00113	5.16e-66	-	-	-	-	-	-	-	-
BOMEOGOA_00114	8.56e-248	-	-	-	S	-	-	-	Bacteriocin helveticin-J
BOMEOGOA_00115	5.86e-267	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00116	1.1e-102	-	-	-	E	-	-	-	Zn peptidase
BOMEOGOA_00117	8.23e-81	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BOMEOGOA_00118	7.81e-67	-	-	-	-	-	-	-	-
BOMEOGOA_00119	3.42e-260	-	-	-	S	-	-	-	Bacteriocin helveticin-J
BOMEOGOA_00120	0.0	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00121	3.39e-226	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00122	1.06e-258	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00123	2.59e-173	-	-	-	-	-	-	-	-
BOMEOGOA_00124	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00125	1.03e-214	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00126	0.000957	-	-	-	-	-	-	-	-
BOMEOGOA_00128	7.61e-264	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00131	6.95e-81	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00132	2.35e-130	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00133	7.72e-18	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00134	4.6e-40	-	-	-	-	-	-	-	-
BOMEOGOA_00136	9.77e-170	yycF	-	-	K	ko:K07668	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator
BOMEOGOA_00137	0.0	vicK	2.7.13.3	-	T	ko:K07652	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
BOMEOGOA_00138	4.49e-314	yycH	-	-	S	-	-	-	YycH protein
BOMEOGOA_00139	9.06e-193	yycI	-	-	S	-	-	-	YycH protein
BOMEOGOA_00140	2.14e-191	vicX	3.1.26.11	-	S	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	domain protein
BOMEOGOA_00141	2.13e-277	htrA	3.4.21.107	-	O	ko:K04771	ko01503,ko02020,map01503,map02020	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	serine protease
BOMEOGOA_00142	1.83e-116	rlmH	2.1.1.177	-	J	ko:K00783	-	ko00000,ko01000,ko03009	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BOMEOGOA_00143	1.75e-225	pepI	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
BOMEOGOA_00144	4.66e-128	-	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Cobalt transport protein
BOMEOGOA_00145	0.0	-	-	-	S	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_00146	2.46e-221	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
BOMEOGOA_00147	7.68e-76	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
BOMEOGOA_00148	1.25e-10	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
BOMEOGOA_00149	8.11e-24	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
BOMEOGOA_00150	1.72e-84	-	-	-	L	-	-	-	Helix-turn-helix domain
BOMEOGOA_00151	6.68e-207	htpX	-	-	O	ko:K03799	-	ko00000,ko00002,ko01000,ko01002	Belongs to the peptidase M48B family
BOMEOGOA_00152	1.43e-125	lemA	-	-	S	ko:K03744	-	ko00000	LemA family
BOMEOGOA_00153	1.17e-249	ysdE	-	-	P	-	-	-	Citrate transporter
BOMEOGOA_00154	1.36e-91	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
BOMEOGOA_00155	2.08e-54	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Membrane domain of glycerophosphoryl diester phosphodiesterase
BOMEOGOA_00156	2.69e-44	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Membrane domain of glycerophosphoryl diester phosphodiesterase
BOMEOGOA_00157	1.09e-76	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Membrane domain of glycerophosphoryl diester phosphodiesterase
BOMEOGOA_00158	5.56e-21	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Membrane domain of glycerophosphoryl diester phosphodiesterase
BOMEOGOA_00159	9.69e-25	-	-	-	-	-	-	-	-
BOMEOGOA_00160	2.2e-216	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00161	5.53e-67	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00162	1.53e-25	ykoJ	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
BOMEOGOA_00164	6.43e-159	yfbR	-	-	S	ko:K07023	-	ko00000	HD containing hydrolase-like enzyme
BOMEOGOA_00165	3.32e-204	-	-	-	L	-	-	-	HNH nucleases
BOMEOGOA_00166	2.21e-177	glnQ	-	-	E	ko:K17076	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_00167	0.0	XK27_05795	-	-	P	ko:K17073,ko:K17074	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BOMEOGOA_00168	2.17e-159	yxlJ	3.2.2.21	-	L	ko:K03652	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Belongs to the DNA glycosylase MPG family
BOMEOGOA_00169	1.67e-83	yeaO	-	-	S	-	-	-	Protein of unknown function, DUF488
BOMEOGOA_00170	3.66e-161	terC	-	-	P	-	-	-	Integral membrane protein TerC family
BOMEOGOA_00171	7.25e-123	adaB	2.1.1.63	-	L	ko:K00567,ko:K10778,ko:K13531	-	ko00000,ko01000,ko03000,ko03400	6-O-methylguanine DNA methyltransferase, DNA binding domain
BOMEOGOA_00172	3.56e-170	cobB	-	-	K	ko:K12410	-	ko00000,ko01000	SIR2 family
BOMEOGOA_00173	1.14e-111	-	-	-	-	-	-	-	-
BOMEOGOA_00174	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BOMEOGOA_00175	1.97e-229	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
BOMEOGOA_00176	1.77e-188	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BOMEOGOA_00177	3.62e-187	-	-	-	S	-	-	-	Protein of unknown function (DUF1002)
BOMEOGOA_00178	3.74e-204	epsV	-	-	S	-	-	-	glycosyl transferase family 2
BOMEOGOA_00179	2.62e-164	-	-	-	S	-	-	-	Alpha/beta hydrolase family
BOMEOGOA_00180	4.17e-149	-	-	-	GM	-	-	-	NmrA-like family
BOMEOGOA_00181	2.88e-86	-	-	-	-	-	-	-	-
BOMEOGOA_00182	3.56e-233	prs2	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BOMEOGOA_00183	3.41e-160	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BOMEOGOA_00184	4.16e-173	-	-	-	-	-	-	-	-
BOMEOGOA_00185	0.0	glnPH2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
BOMEOGOA_00186	5.22e-173	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_00187	5.66e-297	-	-	-	S	-	-	-	Cysteine-rich secretory protein family
BOMEOGOA_00188	3.08e-266	ddl	6.3.2.4	-	F	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Belongs to the D-alanine--D-alanine ligase family
BOMEOGOA_00189	2.54e-144	-	-	-	-	-	-	-	-
BOMEOGOA_00190	1.19e-258	yibE	-	-	S	-	-	-	overlaps another CDS with the same product name
BOMEOGOA_00191	3.31e-168	yibF	-	-	S	-	-	-	overlaps another CDS with the same product name
BOMEOGOA_00192	1.17e-25	-	-	-	I	-	-	-	alpha/beta hydrolase fold
BOMEOGOA_00193	5.92e-280	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
BOMEOGOA_00194	1.01e-111	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00195	0.0	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 31 family
BOMEOGOA_00196	8.67e-111	ntd	2.4.2.6	-	F	ko:K08728	ko00240,map00240	ko00000,ko00001,ko01000	Nucleoside
BOMEOGOA_00197	2.36e-116	-	2.7.1.200, 2.7.1.204	-	G	ko:K02773,ko:K20112	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BOMEOGOA_00198	8.74e-192	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
BOMEOGOA_00199	6.8e-115	usp5	-	-	T	-	-	-	universal stress protein
BOMEOGOA_00200	1.13e-200	phnD	-	-	P	ko:K02044	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphonate ABC transporter
BOMEOGOA_00201	6.34e-180	phnC	3.6.3.28	-	P	ko:K02041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
BOMEOGOA_00202	5.48e-169	phnB	-	-	P	ko:K02042	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BOMEOGOA_00203	7.76e-192	-	-	-	P	ko:K02042	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BOMEOGOA_00204	0.0	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00205	5.95e-141	tag	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	glycosylase
BOMEOGOA_00206	1.05e-108	-	-	-	-	-	-	-	-
BOMEOGOA_00207	0.0	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
BOMEOGOA_00208	0.0	asnB	6.3.5.4	-	E	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	ko00000,ko00001,ko01000,ko01002	Asparagine synthase
BOMEOGOA_00209	0.0	yxbA	6.3.1.12	-	S	ko:K17810	-	ko00000,ko01000	ATP-grasp enzyme
BOMEOGOA_00212	0.0	nrdD	1.1.98.6	-	F	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Ribonucleoside-triphosphate reductase
BOMEOGOA_00213	1.35e-180	nrdG	1.97.1.4	-	O	ko:K04068	-	ko00000,ko01000	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BOMEOGOA_00214	1.94e-129	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
BOMEOGOA_00215	2.12e-110	XK27_04775	-	-	S	ko:K09155	-	ko00000	PAS domain
BOMEOGOA_00216	3.42e-167	XK27_04775	-	-	S	ko:K09155	-	ko00000	PAS domain
BOMEOGOA_00217	8.56e-289	yttB	-	-	EGP	-	-	-	Major Facilitator
BOMEOGOA_00218	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
BOMEOGOA_00219	1.82e-282	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00220	0.0	kup	-	-	P	ko:K03549	-	ko00000,ko02000	Transport of potassium into the cell
BOMEOGOA_00221	1.63e-112	-	-	-	-	-	-	-	-
BOMEOGOA_00223	2.86e-307	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_00224	1.31e-276	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00225	1.61e-19	-	-	-	-	-	-	-	-
BOMEOGOA_00226	2.09e-41	-	-	-	-	-	-	-	-
BOMEOGOA_00227	1.28e-31	-	-	-	S	-	-	-	Protein of unknown function (DUF2922)
BOMEOGOA_00228	1.33e-250	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00229	4.48e-304	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00230	1e-97	-	-	-	L	ko:K07491	-	ko00000	Transposase
BOMEOGOA_00231	3.49e-289	-	-	-	NU	-	-	-	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
BOMEOGOA_00232	2.86e-268	-	3.2.1.96, 3.5.1.28	GH73	M	ko:K01227,ko:K01447,ko:K13714,ko:K13731	ko00511,ko05100,map00511,map05100	ko00000,ko00001,ko01000	N-acetylmuramoyl-L-alanine amidase
BOMEOGOA_00233	0.0	yjbQ	-	-	P	ko:K03455,ko:K03499	-	ko00000,ko02000	TrkA C-terminal domain protein
BOMEOGOA_00234	9.76e-173	-	-	-	K	-	-	-	Protein of unknown function (DUF4065)
BOMEOGOA_00235	1.14e-230	-	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
BOMEOGOA_00236	1.33e-156	-	-	-	-	-	-	-	-
BOMEOGOA_00237	0.0	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00238	5.32e-106	-	-	-	-	-	-	-	-
BOMEOGOA_00239	7.53e-27	-	-	-	-	-	-	-	-
BOMEOGOA_00240	5.49e-172	gpmA	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BOMEOGOA_00241	2.09e-143	pcp	3.4.19.3	-	O	ko:K01304	-	ko00000,ko01000,ko01002	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
BOMEOGOA_00242	7.65e-308	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00243	4.62e-131	-	-	-	G	-	-	-	Aldose 1-epimerase
BOMEOGOA_00244	1.64e-261	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
BOMEOGOA_00245	3.32e-147	plsY1	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
BOMEOGOA_00246	0.0	XK27_08315	-	-	M	-	-	-	Sulfatase
BOMEOGOA_00247	0.0	-	-	-	S	-	-	-	Fibronectin type III domain
BOMEOGOA_00248	3.79e-311	tyrS	6.1.1.1	-	J	ko:K01866	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BOMEOGOA_00249	2.3e-71	-	-	-	-	-	-	-	-
BOMEOGOA_00251	0.0	pepC1	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
BOMEOGOA_00252	5.69e-152	ypgQ	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
BOMEOGOA_00253	7.28e-266	guaB	1.1.1.205	-	F	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
BOMEOGOA_00254	0.0	pepE	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
BOMEOGOA_00255	7.43e-97	hsp	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
BOMEOGOA_00256	2.07e-102	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
BOMEOGOA_00257	6.33e-148	-	-	-	-	-	-	-	-
BOMEOGOA_00259	1.08e-149	-	-	-	E	-	-	-	Belongs to the SOS response-associated peptidase family
BOMEOGOA_00260	1.42e-245	trpS	6.1.1.2	-	J	ko:K01867	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
BOMEOGOA_00261	1.09e-118	comEB	3.5.4.12	-	F	ko:K01493	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko02044	MafB19-like deaminase
BOMEOGOA_00262	1.66e-140	-	-	-	S	ko:K06872	-	ko00000	TPM domain
BOMEOGOA_00263	0.0	mgtA	3.6.3.2	-	P	ko:K01531	-	ko00000,ko01000	COG0474 Cation transport ATPase
BOMEOGOA_00264	0.0	metG	6.1.1.10	-	J	ko:K01874	ko00450,ko00970,map00450,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BOMEOGOA_00265	9.48e-190	tatD	-	-	L	ko:K03424	-	ko00000,ko01000	hydrolase, TatD family
BOMEOGOA_00266	3.64e-129	rnmV	3.1.26.8	-	J	ko:K05985	-	ko00000,ko01000	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
BOMEOGOA_00267	1.47e-208	ksgA	2.1.1.182	-	J	ko:K02528	-	ko00000,ko01000,ko03009	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
BOMEOGOA_00268	2.02e-52	veg	-	-	S	-	-	-	Biofilm formation stimulator VEG
BOMEOGOA_00269	2.6e-193	purR	-	-	F	ko:K09685	-	ko00000,ko03000	pur operon repressor
BOMEOGOA_00270	0.0	glmU	2.3.1.157, 2.7.7.23	-	M	ko:K04042	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BOMEOGOA_00271	2.84e-137	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00272	7.87e-185	-	-	-	-	-	-	-	-
BOMEOGOA_00273	1.15e-277	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00274	3.8e-226	prs	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BOMEOGOA_00275	2.48e-69	-	-	-	GK	-	-	-	ROK family
BOMEOGOA_00276	4.07e-88	-	-	-	GK	-	-	-	ROK family
BOMEOGOA_00277	2.86e-57	-	-	-	-	-	-	-	-
BOMEOGOA_00278	0.0	-	-	-	S	ko:K06885	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
BOMEOGOA_00279	6.77e-87	-	-	-	S	-	-	-	Domain of unknown function (DUF1934)
BOMEOGOA_00280	2e-97	rpoE	-	-	K	ko:K03048	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko03021,ko03400	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
BOMEOGOA_00281	0.0	pyrG	6.3.4.2	-	F	ko:K01937	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
BOMEOGOA_00282	1.33e-312	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BOMEOGOA_00283	2.48e-30	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
BOMEOGOA_00284	8.92e-55	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
BOMEOGOA_00285	0.0	pepDA	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
BOMEOGOA_00286	4.05e-205	msmR	-	-	K	-	-	-	AraC-like ligand binding domain
BOMEOGOA_00287	3.77e-288	pbuX	-	-	F	ko:K03458,ko:K16169	-	ko00000,ko02000	xanthine permease
BOMEOGOA_00288	1e-137	xpt	2.4.2.22	-	F	ko:K03816	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
BOMEOGOA_00289	3.01e-136	-	-	-	K	-	-	-	DNA-binding helix-turn-helix protein
BOMEOGOA_00290	2.02e-289	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00292	0.0	guaA	6.3.5.2	-	F	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the synthesis of GMP from XMP
BOMEOGOA_00293	3.53e-275	-	-	-	-	-	-	-	-
BOMEOGOA_00294	0.0	-	-	-	V	-	-	-	DNA restriction-modification system
BOMEOGOA_00295	3.04e-264	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00299	9.06e-191	-	-	-	D	-	-	-	ftsk spoiiie
BOMEOGOA_00300	5.98e-208	-	-	-	-	-	-	-	-
BOMEOGOA_00301	6.9e-298	glyA	2.1.2.1	-	E	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BOMEOGOA_00302	1.96e-316	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00303	5.5e-31	-	-	-	L	-	-	-	Transposase
BOMEOGOA_00304	1.35e-106	-	-	-	L	-	-	-	Transposase
BOMEOGOA_00305	9.19e-209	-	-	-	-	-	-	-	-
BOMEOGOA_00306	3.04e-264	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00307	2.24e-245	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00308	2.31e-26	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00309	1.42e-228	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00310	2.52e-200	yhaX	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
BOMEOGOA_00311	5.28e-53	rpmE	-	-	J	ko:K02909	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L31
BOMEOGOA_00312	0.0	murF	6.3.2.10	-	M	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
BOMEOGOA_00313	0.0	cshA	3.6.4.13	-	F	ko:K05592	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
BOMEOGOA_00314	6.61e-80	acpS	2.7.8.7	-	I	ko:K00997	ko00770,map00770	ko00000,ko00001,ko01000	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
BOMEOGOA_00315	3.26e-276	alr	5.1.1.1, 5.1.1.5	-	E	ko:K01775,ko:K20707	ko00473,ko01100,ko01502,map00473,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BOMEOGOA_00316	4.65e-25	-	-	-	K	-	-	-	transcriptional regulator
BOMEOGOA_00317	1.36e-84	-	-	-	K	-	-	-	transcriptional regulator
BOMEOGOA_00318	2.49e-166	-	-	-	S	-	-	-	(CBS) domain
BOMEOGOA_00319	1.14e-231	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
BOMEOGOA_00320	1.33e-134	pth	3.1.1.29	-	J	ko:K01056	-	ko00000,ko01000,ko03012	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
BOMEOGOA_00321	0.0	mfd	-	-	L	ko:K03723	ko03420,map03420	ko00000,ko00001,ko01000,ko03400	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BOMEOGOA_00322	1.26e-46	yabO	-	-	J	-	-	-	S4 domain protein
BOMEOGOA_00323	1.52e-77	divIC	-	-	D	ko:K13052	-	ko00000,ko03036	Septum formation initiator
BOMEOGOA_00324	4.44e-79	-	-	-	J	ko:K07571	-	ko00000	S1 RNA binding domain
BOMEOGOA_00325	2.52e-309	tilS	2.4.2.8, 6.3.4.19	-	J	ko:K04075,ko:K15780	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000,ko03016	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
BOMEOGOA_00326	0.0	ftsH	-	-	O	ko:K03798	-	ko00000,ko00002,ko01000,ko01002,ko03110	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BOMEOGOA_00327	1.53e-211	hslO	-	-	O	ko:K04083	-	ko00000,ko03110	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BOMEOGOA_00328	2.37e-249	dus	-	-	J	ko:K05540	-	ko00000,ko01000,ko03016	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BOMEOGOA_00329	0.0	lysS	6.1.1.6	-	J	ko:K04567	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family
BOMEOGOA_00331	6.47e-36	-	-	-	-	-	-	-	-
BOMEOGOA_00334	7.84e-106	ytsP	1.8.4.14	-	T	ko:K08968	ko00270,map00270	ko00000,ko00001,ko01000	GAF domain-containing protein
BOMEOGOA_00335	0.0	clpC	-	-	O	ko:K03696	ko01100,map01100	ko00000,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
BOMEOGOA_00336	0.0	rpoB	2.7.7.6	-	K	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BOMEOGOA_00337	0.0	rpoC	2.7.7.6	-	K	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BOMEOGOA_00338	5.48e-59	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00340	1.04e-197	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00341	1.28e-155	comC	3.4.23.43	-	NOU	ko:K02236	-	ko00000,ko00002,ko01000,ko02044	Bacterial Peptidase A24 N-terminal domain
BOMEOGOA_00342	7.28e-92	rpsL	-	-	J	ko:K02950	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BOMEOGOA_00343	1.39e-106	rpsG	-	-	J	ko:K02992	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
BOMEOGOA_00344	0.0	fusA	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BOMEOGOA_00345	6.34e-66	rpsJ	-	-	J	ko:K02946	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Involved in the binding of tRNA to the ribosomes
BOMEOGOA_00346	3.29e-146	rplC	-	-	J	ko:K02906	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BOMEOGOA_00347	1.91e-137	rplD	-	-	J	ko:K02926	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the polypeptide exit tunnel
BOMEOGOA_00348	4.67e-63	rplW	-	-	J	ko:K02892	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
BOMEOGOA_00349	1.63e-197	rplB	-	-	J	ko:K02886	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BOMEOGOA_00350	4.33e-62	rpsS	-	-	J	ko:K02965	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BOMEOGOA_00351	9.07e-73	rplV	-	-	J	ko:K02890	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BOMEOGOA_00352	3.69e-158	rpsC	-	-	J	ko:K02982	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BOMEOGOA_00353	1.66e-100	rplP	-	-	J	ko:K02878	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BOMEOGOA_00354	1.45e-34	rpmC	-	-	J	ko:K02904	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uL29 family
BOMEOGOA_00355	6.37e-55	rpsQ	-	-	J	ko:K02961	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BOMEOGOA_00356	2.55e-79	rplN	-	-	J	ko:K02874	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BOMEOGOA_00357	6.92e-45	rplX	-	-	J	ko:K02895	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BOMEOGOA_00358	7.13e-123	rplE	-	-	J	ko:K02931	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BOMEOGOA_00359	1e-39	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BOMEOGOA_00360	2.28e-89	rpsH	-	-	J	ko:K02994	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BOMEOGOA_00361	1.24e-121	rplF	-	-	J	ko:K02933	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BOMEOGOA_00362	3.67e-73	rplR	-	-	J	ko:K02881	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BOMEOGOA_00363	2.63e-110	rpsE	-	-	J	ko:K02988	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BOMEOGOA_00364	2.22e-34	rpmD	-	-	J	ko:K02907	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L30
BOMEOGOA_00365	1.73e-93	rplO	-	-	J	ko:K02876	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
BOMEOGOA_00366	5.1e-301	secY	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
BOMEOGOA_00367	2.61e-155	adk	2.7.4.3	-	F	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
BOMEOGOA_00368	3.13e-46	infA	-	-	J	ko:K02518	-	ko00000,ko03012	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BOMEOGOA_00369	1.89e-21	rpmJ	-	-	J	ko:K02919	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL36 family
BOMEOGOA_00370	7.21e-74	rpsM	-	-	J	ko:K02952	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BOMEOGOA_00371	3.82e-82	rpsK	-	-	J	ko:K02948	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BOMEOGOA_00372	6.27e-219	rpoA	2.7.7.6	-	K	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BOMEOGOA_00373	4.49e-80	rplQ	-	-	J	ko:K02879	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L17
BOMEOGOA_00374	6.9e-198	ecfA1	-	-	P	ko:K16786	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BOMEOGOA_00375	2.62e-193	ecfA2	-	-	P	ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BOMEOGOA_00376	6.64e-182	ecfT	-	-	U	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BOMEOGOA_00377	3.86e-193	truA	5.4.99.12	-	J	ko:K06173	-	ko00000,ko01000,ko03016	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
BOMEOGOA_00378	2.27e-103	rplM	-	-	J	ko:K02871	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BOMEOGOA_00379	1.01e-87	rpsI	-	-	J	ko:K02996	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS9 family
BOMEOGOA_00380	2.7e-278	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_00381	2.88e-310	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00382	4.04e-94	yhaH	-	-	S	-	-	-	Protein of unknown function (DUF805)
BOMEOGOA_00383	1.48e-140	-	3.5.1.124	-	S	ko:K03152	-	ko00000,ko01000,ko01002	DJ-1/PfpI family
BOMEOGOA_00384	1.97e-85	-	3.8.1.2	-	S	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
BOMEOGOA_00385	3.13e-173	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
BOMEOGOA_00386	8.07e-163	-	-	-	G	-	-	-	Belongs to the phosphoglycerate mutase family
BOMEOGOA_00387	1.3e-209	-	-	-	P	ko:K16264	-	ko00000,ko02000	cation diffusion facilitator family transporter
BOMEOGOA_00388	4.73e-31	-	-	-	-	-	-	-	-
BOMEOGOA_00389	1.7e-164	gpmA1	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BOMEOGOA_00390	8.09e-235	-	-	-	S	-	-	-	AAA domain
BOMEOGOA_00391	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00392	1.5e-26	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00393	6.94e-44	-	-	-	L	ko:K07496	-	ko00000	Transposase
BOMEOGOA_00394	2.64e-174	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00395	0.0	mgtA	3.6.3.2	-	P	ko:K01531	-	ko00000,ko01000	COG0474 Cation transport ATPase
BOMEOGOA_00396	3.88e-73	-	-	-	-	-	-	-	-
BOMEOGOA_00397	1.54e-187	-	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
BOMEOGOA_00398	0.0	pepC	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
BOMEOGOA_00399	1.86e-211	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_00400	3.28e-285	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00401	5.04e-71	-	-	-	-	-	-	-	-
BOMEOGOA_00402	1.56e-132	dut	3.6.1.23	-	F	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	dUTP diphosphatase
BOMEOGOA_00403	0.0	radA	-	-	O	ko:K04485	-	ko00000,ko03400	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
BOMEOGOA_00404	0.0	gltX	6.1.1.24	-	J	ko:K09698	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BOMEOGOA_00405	0.0	cysS	6.1.1.16	-	J	ko:K01883	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
BOMEOGOA_00406	7.88e-97	mrnC	-	-	J	ko:K11145	-	ko00000,ko01000,ko03009	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
BOMEOGOA_00407	1.76e-178	trmH	2.1.1.185	-	J	ko:K03218	-	ko00000,ko01000,ko03009	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BOMEOGOA_00408	2.03e-118	comX	-	-	K	ko:K03088,ko:K03091,ko:K12296	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko03000,ko03021	Belongs to the sigma-70 factor family
BOMEOGOA_00409	2.41e-45	-	-	-	-	-	-	-	-
BOMEOGOA_00410	0.0	gntK	2.7.1.12	-	G	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko01000	Belongs to the FGGY kinase family
BOMEOGOA_00411	4e-109	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BOMEOGOA_00412	4.18e-59	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BOMEOGOA_00413	1.33e-59	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BOMEOGOA_00414	3.12e-119	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BOMEOGOA_00415	8.53e-34	secE	-	-	U	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
BOMEOGOA_00416	2.58e-132	nusG	-	-	K	ko:K02601	-	ko00000,ko03009,ko03021	Participates in transcription elongation, termination and antitermination
BOMEOGOA_00417	3.82e-90	rplK	-	-	J	ko:K02867	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BOMEOGOA_00418	3.02e-160	rplA	-	-	J	ko:K02863	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
BOMEOGOA_00419	1.29e-156	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00420	2.71e-106	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00421	4e-91	-	-	-	L	-	-	-	IS1381, transposase OrfA
BOMEOGOA_00422	6.67e-202	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
BOMEOGOA_00423	4.93e-221	pstC	-	-	P	ko:K02037	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	probably responsible for the translocation of the substrate across the membrane
BOMEOGOA_00424	9.02e-199	pstA	-	-	P	ko:K02038	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphate transport system permease protein PstA
BOMEOGOA_00425	1.5e-186	pstB2	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
BOMEOGOA_00426	2.31e-179	pstB1	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
BOMEOGOA_00427	1.43e-151	phoU	-	-	P	ko:K02039	-	ko00000	Plays a role in the regulation of phosphate uptake
BOMEOGOA_00428	1.88e-34	ywkB	-	-	S	ko:K07088	-	ko00000	Membrane transport protein
BOMEOGOA_00429	6.31e-203	ywkB	-	-	S	ko:K07088	-	ko00000	Membrane transport protein
BOMEOGOA_00430	3.72e-111	rplJ	-	-	J	ko:K02864	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BOMEOGOA_00431	1.61e-72	rplL	-	-	J	ko:K02935	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
BOMEOGOA_00432	3.75e-112	-	2.1.1.172	-	J	ko:K00564,ko:K10716	-	ko00000,ko01000,ko02000,ko03009	Ion channel
BOMEOGOA_00433	5.72e-150	rsmC	2.1.1.172	-	J	ko:K00564	-	ko00000,ko01000,ko03009	Methyltransferase
BOMEOGOA_00434	9.21e-120	tadA	3.5.4.33	-	F	ko:K11991	-	ko00000,ko01000,ko03016	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
BOMEOGOA_00435	0.0	dnaX	2.7.7.7	-	L	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BOMEOGOA_00436	6.03e-57	yaaK	-	-	S	ko:K09747	-	ko00000	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BOMEOGOA_00437	6.48e-142	recR	-	-	L	ko:K06187	ko03440,map03440	ko00000,ko00001,ko03400	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BOMEOGOA_00438	4.73e-47	-	-	-	S	-	-	-	Protein of unknown function (DUF2508)
BOMEOGOA_00439	8.42e-149	tmk	2.7.4.9	-	F	ko:K00943	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BOMEOGOA_00440	1.52e-68	yaaQ	-	-	S	-	-	-	Cyclic-di-AMP receptor
BOMEOGOA_00441	4.16e-199	holB	2.7.7.7	-	L	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
BOMEOGOA_00442	1.99e-80	yabA	-	-	L	-	-	-	Involved in initiation control of chromosome replication
BOMEOGOA_00443	8.11e-201	rsmI	2.1.1.198	-	H	ko:K07056	-	ko00000,ko01000,ko03009	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BOMEOGOA_00444	3.43e-182	fat	3.1.2.21	-	I	ko:K01071	ko00061,ko01100,map00061,map01100	ko00000,ko00001,ko01000,ko01004	Acyl-ACP thioesterase
BOMEOGOA_00445	2.61e-112	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
BOMEOGOA_00446	2.8e-172	yeaZ	2.3.1.234	-	O	ko:K01409,ko:K14742	-	ko00000,ko01000,ko03016	Universal bacterial protein YeaZ
BOMEOGOA_00447	1.17e-135	rimI	2.3.1.128	-	K	ko:K03789	-	ko00000,ko01000,ko03009	Ribosomal-protein-alanine acetyltransferase
BOMEOGOA_00448	1.45e-252	tsaD	2.3.1.234	-	J	ko:K01409	-	ko00000,ko01000,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BOMEOGOA_00449	1.56e-277	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_00450	1.74e-311	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00451	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
BOMEOGOA_00452	1.3e-44	-	-	-	S	-	-	-	Transposase C of IS166 homeodomain
BOMEOGOA_00453	6.93e-85	-	-	-	L	ko:K07484	-	ko00000	IS66 Orf2 like protein
BOMEOGOA_00454	1.42e-24	-	-	-	-	-	-	-	-
BOMEOGOA_00455	0.0	ydiF	-	-	S	ko:K06158	-	ko00000,ko03012	ABC transporter, ATP-binding protein
BOMEOGOA_00456	4.32e-148	rex	-	-	K	ko:K01926	-	ko00000,ko03000	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
BOMEOGOA_00457	6.68e-103	-	-	-	K	-	-	-	LytTr DNA-binding domain
BOMEOGOA_00458	7.57e-163	-	-	-	S	-	-	-	membrane
BOMEOGOA_00459	1.01e-148	scrR	-	-	K	ko:K02529,ko:K03484	-	ko00000,ko03000	Transcriptional regulator, LacI family
BOMEOGOA_00460	3.42e-40	scrR	-	-	K	ko:K02529,ko:K03484	-	ko00000,ko03000	Transcriptional regulator, LacI family
BOMEOGOA_00461	1.36e-117	-	2.7.1.211	-	G	ko:K02755,ko:K02756,ko:K02757,ko:K02777,ko:K02808,ko:K02809,ko:K02810	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	ko00000,ko00001,ko00002,ko01000,ko02000	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
BOMEOGOA_00462	3.36e-61	-	-	-	-	-	-	-	-
BOMEOGOA_00463	1.68e-116	-	-	-	-	-	-	-	-
BOMEOGOA_00464	9.06e-60	groS	-	-	O	ko:K04078	-	ko00000,ko03029,ko03110	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BOMEOGOA_00465	0.0	groL	-	-	O	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
BOMEOGOA_00466	0.0	mutS	-	-	L	ko:K03555	ko03430,map03430	ko00000,ko00001,ko03400	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BOMEOGOA_00467	0.0	mutL	-	-	L	ko:K03572	ko03430,map03430	ko00000,ko00001,ko03400	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BOMEOGOA_00468	3.6e-133	ruvA	3.6.4.12	-	L	ko:K03550	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
BOMEOGOA_00469	5.3e-240	ruvB	3.6.4.12	-	L	ko:K03551	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
BOMEOGOA_00470	1.32e-81	yajC	-	-	U	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
BOMEOGOA_00471	0.0	zwf	1.1.1.363, 1.1.1.49	-	G	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BOMEOGOA_00472	2.47e-274	dinB	2.7.7.7	-	L	ko:K02346	-	ko00000,ko01000,ko03400	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BOMEOGOA_00473	2.82e-234	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHHA1 domain protein
BOMEOGOA_00474	9.18e-317	cshB	3.6.4.13	-	JKL	ko:K05592,ko:K18692	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
BOMEOGOA_00475	1.29e-58	-	-	-	-	-	-	-	-
BOMEOGOA_00476	5.61e-113	-	-	-	-	-	-	-	-
BOMEOGOA_00477	0.0	alaS	6.1.1.7	-	J	ko:K01872	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BOMEOGOA_00478	5.32e-57	yrzL	-	-	S	-	-	-	Belongs to the UPF0297 family
BOMEOGOA_00479	6.59e-96	yrrK	-	-	J	ko:K07447	-	ko00000,ko01000	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BOMEOGOA_00480	2.38e-66	yrzB	-	-	S	-	-	-	Belongs to the UPF0473 family
BOMEOGOA_00481	0.0	mutS2	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
BOMEOGOA_00482	8.93e-71	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
BOMEOGOA_00483	0.0	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00484	8.79e-67	mscL	-	-	M	ko:K03282	-	ko00000,ko02000	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
BOMEOGOA_00485	6.4e-106	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00486	8.79e-109	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00487	2.06e-91	yslB	-	-	S	-	-	-	Protein of unknown function (DUF2507)
BOMEOGOA_00488	1.69e-189	murI	3.6.1.66, 5.1.1.3	-	M	ko:K01776,ko:K02428	ko00230,ko00471,ko01100,map00230,map00471,map01100	ko00000,ko00001,ko01000,ko01011	Provides the (R)-glutamate required for cell wall biosynthesis
BOMEOGOA_00489	1.85e-149	rdgB	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BOMEOGOA_00490	8.54e-306	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00491	2.66e-252	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_00492	1.5e-185	-	2.3.1.179	-	I	ko:K00646,ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004,ko01008	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
BOMEOGOA_00493	4.26e-10	fabZ	3.5.1.108, 4.2.1.59	-	IM	ko:K16363	ko00061,ko00540,ko01100,ko01212,map00061,map00540,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004,ko01005	FabA-like domain
BOMEOGOA_00494	1.54e-34	-	-	-	EGP	-	-	-	Transmembrane secretion effector
BOMEOGOA_00495	3.12e-196	ydiM	-	-	G	-	-	-	Major facilitator superfamily
BOMEOGOA_00497	2.04e-95	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
BOMEOGOA_00498	7.65e-308	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00499	2.7e-278	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_00500	2.97e-269	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00501	4.62e-251	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00502	5.91e-198	ykuT	-	-	M	ko:K16052,ko:K22044	-	ko00000,ko02000	mechanosensitive ion channel
BOMEOGOA_00503	3.11e-28	ytxG	-	-	S	-	-	-	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
BOMEOGOA_00504	2.07e-65	-	-	-	-	-	-	-	-
BOMEOGOA_00505	2.89e-275	pepQ	3.4.13.9	-	E	ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
BOMEOGOA_00506	3.69e-233	ccpA	-	-	K	ko:K02529	-	ko00000,ko03000	catabolite control protein A
BOMEOGOA_00507	0.0	-	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
BOMEOGOA_00508	2.42e-74	-	-	-	-	-	-	-	-
BOMEOGOA_00509	0.0	sasH	3.1.3.5, 3.1.3.6, 3.1.4.16, 3.6.1.45	-	F	ko:K01081,ko:K01119,ko:K07004,ko:K08693,ko:K11751	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
BOMEOGOA_00510	6.55e-130	yutD	-	-	S	-	-	-	Protein of unknown function (DUF1027)
BOMEOGOA_00511	1.24e-187	nagD	3.1.3.41	-	G	ko:K01101	ko00627,ko01120,map00627,map01120	ko00000,ko00001,ko01000	Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
BOMEOGOA_00512	1.64e-116	-	-	-	S	-	-	-	Protein of unknown function (DUF1461)
BOMEOGOA_00513	4.16e-151	dedA	-	-	S	ko:K03975	-	ko00000	SNARE-like domain protein
BOMEOGOA_00514	3.33e-196	yumC	1.18.1.2, 1.19.1.1	-	C	ko:K21567	-	ko00000,ko01000	Ferredoxin--NADP reductase
BOMEOGOA_00515	4.33e-103	-	-	-	-	-	-	-	-
BOMEOGOA_00516	1.76e-109	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
BOMEOGOA_00544	1.19e-279	-	2.4.1.337	GT4	M	ko:K19002	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyl transferase 4-like domain
BOMEOGOA_00545	2.7e-258	cpoA	2.4.1.208	GT4	M	ko:K13677,ko:K13678	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
BOMEOGOA_00546	4.59e-226	mprF	-	-	S	ko:K07027	-	ko00000,ko02000	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BOMEOGOA_00547	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
BOMEOGOA_00548	1.3e-40	secG	-	-	U	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
BOMEOGOA_00549	0.0	rnr	-	-	J	ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko03016,ko03019	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
BOMEOGOA_00550	4.52e-101	smpB	-	-	J	ko:K03664	-	ko00000	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
BOMEOGOA_00551	4.33e-103	-	-	-	-	-	-	-	-
BOMEOGOA_00554	1.76e-109	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
BOMEOGOA_00557	7.05e-217	-	-	-	P	ko:K02077	-	ko00000,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
BOMEOGOA_00560	4.32e-279	metK	2.5.1.6	-	H	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BOMEOGOA_00561	0.0	mdr	-	-	EGP	-	-	-	Major Facilitator
BOMEOGOA_00562	2.88e-90	hepT	2.5.1.30	-	H	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
BOMEOGOA_00563	1.04e-78	hepT	2.5.1.30	-	H	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
BOMEOGOA_00564	3.1e-154	yodM	3.6.1.27	-	I	ko:K19302	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	Acid phosphatase homologues
BOMEOGOA_00565	0.0	leuS	6.1.1.4	-	J	ko:K01869	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Belongs to the class-I aminoacyl-tRNA synthetase family
BOMEOGOA_00566	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
BOMEOGOA_00567	2.55e-253	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00568	3.37e-140	-	-	-	-	-	-	-	-
BOMEOGOA_00569	0.0	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00570	1.57e-84	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
BOMEOGOA_00571	1.99e-14	-	-	-	M	-	-	-	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BOMEOGOA_00572	3.38e-45	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
BOMEOGOA_00573	1.2e-76	-	-	-	CO	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Thioredoxin
BOMEOGOA_00574	1.45e-151	-	-	-	K	-	-	-	Rhodanese Homology Domain
BOMEOGOA_00575	3.8e-222	trxB	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
BOMEOGOA_00576	2.03e-30	frnE	5.3.4.1	-	Q	ko:K01829	-	ko00000,ko01000	DSBA-like thioredoxin domain
BOMEOGOA_00577	5.3e-33	frnE	5.3.4.1	-	Q	ko:K01829	-	ko00000,ko01000	DSBA-like thioredoxin domain
BOMEOGOA_00578	1.16e-35	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
BOMEOGOA_00579	4.39e-66	psd	4.1.1.65	-	I	ko:K01613	ko00564,ko01100,ko01110,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the phosphatidylserine decarboxylase family
BOMEOGOA_00580	2.58e-65	pspC	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	PspC domain
BOMEOGOA_00582	3.66e-310	dacA	3.4.16.4	-	M	ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
BOMEOGOA_00583	1.5e-195	nnrD	4.2.1.136, 5.1.99.6	-	H	ko:K17758,ko:K17759	-	ko00000,ko01000	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BOMEOGOA_00584	7.69e-153	-	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
BOMEOGOA_00585	1.39e-121	-	-	-	L	-	-	-	DDE superfamily endonuclease
BOMEOGOA_00586	1.96e-142	-	-	-	L	-	-	-	Transposase
BOMEOGOA_00587	6.04e-209	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00588	4.36e-155	-	4.2.1.1	-	P	ko:K01674	ko00910,map00910	ko00000,ko00001,ko01000	Eukaryotic-type carbonic anhydrase
BOMEOGOA_00589	7.12e-188	-	-	-	L	ko:K07448	-	ko00000,ko02048	Mrr N-terminal domain
BOMEOGOA_00590	6.72e-126	rumA_2	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BOMEOGOA_00591	3.68e-184	rumA_2	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BOMEOGOA_00592	9.54e-152	ybbB	-	-	S	-	-	-	Protein of unknown function (DUF1211)
BOMEOGOA_00593	1.39e-121	-	-	-	L	-	-	-	DDE superfamily endonuclease
BOMEOGOA_00594	1.96e-142	-	-	-	L	-	-	-	Transposase
BOMEOGOA_00595	2.73e-68	padR	-	-	K	-	-	-	Virulence activator alpha C-term
BOMEOGOA_00596	7.83e-46	padC	-	-	Q	ko:K13727	-	ko00000,ko01000	Phenolic acid decarboxylase
BOMEOGOA_00597	2.85e-147	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
BOMEOGOA_00599	0.0	argS	6.1.1.19	-	J	ko:K01887	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Arginyl-tRNA synthetase
BOMEOGOA_00600	5.16e-218	fba	4.1.2.13, 4.1.2.29	-	G	ko:K01624,ko:K03339	ko00010,ko00030,ko00051,ko00562,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00562,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-1,6-bisphosphate aldolase, class II
BOMEOGOA_00601	1.03e-118	-	-	-	L	-	-	-	NUDIX domain
BOMEOGOA_00602	3.27e-53	-	-	-	-	-	-	-	-
BOMEOGOA_00603	1.5e-42	-	-	-	-	-	-	-	-
BOMEOGOA_00604	7.87e-78	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00605	4.01e-59	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00606	1.06e-57	-	-	-	-	-	-	-	-
BOMEOGOA_00607	1.19e-44	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
BOMEOGOA_00608	8.14e-34	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_00609	3.43e-69	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_00610	1.41e-18	-	-	-	S	-	-	-	Fic/DOC family
BOMEOGOA_00611	1e-81	-	-	-	L	-	-	-	IS1381, transposase OrfA
BOMEOGOA_00612	2.57e-109	-	-	-	K	-	-	-	Domain of unknown function (DUF1836)
BOMEOGOA_00613	1.84e-199	yitS	-	-	S	-	-	-	EDD domain protein, DegV family
BOMEOGOA_00614	2.39e-08	-	-	-	M	-	-	-	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BOMEOGOA_00616	2.31e-26	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00617	3.7e-41	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00618	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00619	2.37e-107	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_00621	1.91e-193	citG	2.4.2.52	-	H	ko:K05966	ko02020,map02020	ko00000,ko00001,ko01000	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
BOMEOGOA_00622	3.41e-71	-	-	-	-	-	-	-	-
BOMEOGOA_00623	1.27e-174	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
BOMEOGOA_00624	3.2e-39	mgtC3	-	-	S	ko:K07507	-	ko00000,ko02000	MgtC family
BOMEOGOA_00625	8.43e-100	mgtC3	-	-	S	ko:K07507	-	ko00000,ko02000	MgtC family
BOMEOGOA_00626	3.51e-30	bglH	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	beta-glucosidase activity
BOMEOGOA_00627	3.09e-210	rluA	5.4.99.23, 5.4.99.28, 5.4.99.29	-	J	ko:K06177,ko:K06180	-	ko00000,ko01000,ko03009,ko03016	Responsible for synthesis of pseudouridine from uracil
BOMEOGOA_00628	0.0	pbp2A	2.4.1.129, 3.4.16.4	GT51	M	ko:K12555	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein
BOMEOGOA_00629	2.07e-73	yheA	-	-	S	-	-	-	Belongs to the UPF0342 family
BOMEOGOA_00630	3.52e-293	yhaO	-	-	L	ko:K03547	-	ko00000,ko03400	Ser Thr phosphatase family protein
BOMEOGOA_00631	0.0	yhaN	-	-	L	-	-	-	AAA domain
BOMEOGOA_00632	2.85e-242	yhaM	-	-	S	ko:K03698	-	ko00000,ko01000,ko03019	Metal dependent phosphohydrolases with conserved 'HD' motif.
BOMEOGOA_00633	6.37e-102	XK27_04775	-	-	S	ko:K09155	-	ko00000	PAS domain
BOMEOGOA_00634	2.79e-200	prsA	5.2.1.8	-	M	ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
BOMEOGOA_00635	6.03e-57	-	-	-	-	-	-	-	-
BOMEOGOA_00636	1.17e-104	hit	-	-	FG	ko:K02503	-	ko00000,ko04147	Scavenger mRNA decapping enzyme C-term binding
BOMEOGOA_00637	1.33e-46	-	-	-	S	-	-	-	Plasmid maintenance system killer
BOMEOGOA_00638	4.8e-72	-	-	-	K	ko:K21498	-	ko00000,ko02048	Helix-turn-helix XRE-family like proteins
BOMEOGOA_00639	3.67e-174	ecsA	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_00640	2.66e-271	ecsB	-	-	U	ko:K01992	-	ko00000,ko00002,ko02000	ABC transporter
BOMEOGOA_00641	7.82e-161	trmB	2.1.1.33	-	J	ko:K03439	-	ko00000,ko01000,ko03016	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
BOMEOGOA_00642	1.64e-72	ytpP	-	-	CO	-	-	-	Thioredoxin
BOMEOGOA_00643	3.06e-157	XK27_10290	-	-	J	ko:K06878	-	ko00000	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
BOMEOGOA_00644	0.0	-	-	-	-	-	-	-	-
BOMEOGOA_00645	3.92e-49	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00646	3.68e-62	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00647	1.01e-101	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00648	1.9e-79	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter (Permease)
BOMEOGOA_00649	0.0	prtB	3.4.21.96	-	O	ko:K01361	-	ko00000,ko01000,ko01002,ko03110	Belongs to the peptidase S8 family
BOMEOGOA_00650	8.75e-41	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00651	2.43e-55	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00652	6.79e-95	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00653	3.95e-139	-	-	-	-	-	-	-	-
BOMEOGOA_00654	7.11e-148	-	-	-	M	-	-	-	LysM domain
BOMEOGOA_00656	2.45e-06	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
BOMEOGOA_00657	5.04e-100	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
BOMEOGOA_00658	0.0	murC	6.3.2.8	-	M	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Belongs to the MurCDEF family
BOMEOGOA_00659	0.0	-	-	-	L	-	-	-	Transposase
BOMEOGOA_00660	8.29e-226	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00661	0.0	-	-	-	M	-	-	-	Peptidase family M1 domain
BOMEOGOA_00662	1.08e-246	-	-	-	S	-	-	-	Bacteriocin helveticin-J
BOMEOGOA_00663	3.05e-21	-	-	-	-	-	-	-	-
BOMEOGOA_00664	1.87e-68	-	-	-	L	ko:K07473	-	ko00000,ko02048	RelB antitoxin
BOMEOGOA_00665	9.65e-193	hflC	-	-	O	ko:K04087	-	ko00000,ko00002,ko01000	prohibitin homologues
BOMEOGOA_00666	6.63e-88	-	-	-	C	-	-	-	Flavodoxin
BOMEOGOA_00667	1.97e-21	-	-	-	C	-	-	-	Flavodoxin
BOMEOGOA_00668	1.49e-189	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00669	7.72e-18	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00670	2.94e-184	purD	6.3.4.13	-	F	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the GARS family
BOMEOGOA_00671	0.0	-	-	-	L	ko:K07012	-	ko00000,ko01000,ko02048	Type III restriction enzyme, res subunit
BOMEOGOA_00672	1.11e-184	cas5	-	-	S	ko:K19119	-	ko00000,ko02048	CRISPR-associated protein (Cas_Cas5)
BOMEOGOA_00673	0.0	csd1	-	-	M	ko:K19117	-	ko00000,ko02048	CRISPR-associated protein (Cas_Csd1)
BOMEOGOA_00674	5.5e-203	csd2	-	-	L	ko:K19115,ko:K19118	-	ko00000,ko02048	CRISPR-associated protein Cas7
BOMEOGOA_00675	5.94e-161	cas4	3.1.12.1	-	L	ko:K07464	-	ko00000,ko01000,ko02048	Domain of unknown function DUF83
BOMEOGOA_00676	1.74e-252	cas1	-	-	L	ko:K15342	-	ko00000,ko02048,ko03400	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
BOMEOGOA_00677	2.86e-39	cas2	-	-	L	ko:K09951	-	ko00000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
BOMEOGOA_00678	5.96e-18	-	-	-	-	-	-	-	-
BOMEOGOA_00679	0.0	polA	2.7.7.7	-	L	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	ko00000,ko00001,ko01000,ko03032,ko03400	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BOMEOGOA_00680	6.45e-203	fpg	3.2.2.23, 4.2.99.18	-	L	ko:K10563	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
BOMEOGOA_00681	2.63e-137	coaE	2.7.1.24	-	F	ko:K00859	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BOMEOGOA_00682	5.46e-108	nrdR	-	-	K	ko:K07738	-	ko00000,ko03000	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BOMEOGOA_00683	6.19e-315	dnaB2	-	-	L	ko:K03346	-	ko00000,ko03032	Replication initiation and membrane attachment
BOMEOGOA_00684	1.79e-213	dnaI	-	-	L	ko:K11144	-	ko00000,ko03032	Primosomal protein DnaI
BOMEOGOA_00685	0.0	thrS	6.1.1.3	-	J	ko:K01868	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BOMEOGOA_00686	0.00012	-	-	-	-	-	-	-	-
BOMEOGOA_00687	3.45e-68	-	-	-	-	-	-	-	-
BOMEOGOA_00688	9.1e-124	-	-	-	-	-	-	-	-
BOMEOGOA_00689	1.07e-137	-	-	-	L	-	-	-	Resolvase, N terminal domain
BOMEOGOA_00690	0.0	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_00691	1.45e-20	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00692	2.56e-76	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00693	4.08e-62	-	-	-	S	ko:K09707	-	ko00000	ACT domain
BOMEOGOA_00694	2.88e-249	-	-	-	S	-	-	-	Domain of unknown function (DUF389)
BOMEOGOA_00695	6.03e-74	astA	2.8.2.22	-	M	ko:K01023	-	ko00000,ko01000	Arylsulfotransferase Ig-like domain
BOMEOGOA_00696	2.02e-300	astA	2.8.2.22	-	M	ko:K01023	-	ko00000,ko01000	Arylsulfotransferase Ig-like domain
BOMEOGOA_00697	1.44e-74	infC	-	-	J	ko:K02520	-	ko00000,ko03012,ko03029	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BOMEOGOA_00698	4.77e-38	rpmI	-	-	J	ko:K02916	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL35 family
BOMEOGOA_00699	1.23e-75	rplT	-	-	J	ko:K02887	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BOMEOGOA_00700	1.51e-121	yqeG	-	-	S	ko:K07015	-	ko00000	HAD phosphatase, family IIIA
BOMEOGOA_00701	1.42e-271	yqeH	-	-	S	ko:K06948	-	ko00000,ko03009	Ribosome biogenesis GTPase YqeH
BOMEOGOA_00702	8.56e-151	nadD	2.7.7.18	-	H	ko:K00969	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BOMEOGOA_00703	9.6e-143	yqeK	-	-	H	-	-	-	Hydrolase, HD family
BOMEOGOA_00704	3.58e-78	rsfS	-	-	J	ko:K09710	-	ko00000,ko03009	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
BOMEOGOA_00705	3.81e-274	ylbM	-	-	S	-	-	-	Belongs to the UPF0348 family
BOMEOGOA_00706	2.47e-125	ylbN	-	-	S	ko:K07040	-	ko00000	Uncharacterized ACR, COG1399
BOMEOGOA_00707	2.12e-164	csrR	-	-	K	-	-	-	response regulator
BOMEOGOA_00708	0.0	arlS	2.7.13.3	-	T	ko:K18940	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
BOMEOGOA_00709	1.97e-94	slpX	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00710	3.36e-192	slpX	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00711	3.99e-74	-	-	-	L	-	-	-	Integrase
BOMEOGOA_00712	4.53e-301	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00713	7.63e-107	-	-	-	S	ko:K19055	-	ko00000,ko01000,ko03016	Aminoacyl-tRNA editing domain
BOMEOGOA_00714	7.64e-204	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
BOMEOGOA_00715	3.93e-59	acyP	3.6.1.7	-	C	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	ko00000,ko00001,ko01000	Belongs to the acylphosphatase family
BOMEOGOA_00716	9.01e-179	spoU	-	-	J	ko:K03437	-	ko00000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BOMEOGOA_00717	1.02e-82	yodB	-	-	K	-	-	-	Transcriptional regulator, HxlR family
BOMEOGOA_00718	5.46e-259	pheS	6.1.1.20	-	J	ko:K01889	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BOMEOGOA_00719	0.0	pheT	6.1.1.20	-	J	ko:K01890	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
BOMEOGOA_00720	9.55e-90	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
BOMEOGOA_00721	1.87e-216	ldh3	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	lactate/malate dehydrogenase, alpha/beta C-terminal domain
BOMEOGOA_00722	1.87e-74	-	-	-	S	-	-	-	Phage derived protein Gp49-like (DUF891)
BOMEOGOA_00723	5.83e-52	-	-	-	K	-	-	-	Helix-turn-helix domain
BOMEOGOA_00724	0.0	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00725	5.79e-217	-	-	-	G	-	-	-	BadF/BadG/BcrA/BcrD ATPase family
BOMEOGOA_00726	0.0	-	-	-	S	-	-	-	membrane
BOMEOGOA_00727	0.0	pbp2b	-	-	M	ko:K00687,ko:K12553,ko:K21465,ko:K21466	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
BOMEOGOA_00728	6.25e-29	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
BOMEOGOA_00729	3.12e-129	fthC	6.3.3.2	-	H	ko:K01934	ko00670,ko01100,map00670,map01100	ko00000,ko00001,ko01000	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BOMEOGOA_00730	3.96e-154	gluP	3.4.21.105	-	S	ko:K19225	-	ko00000,ko01000,ko01002	Rhomboid family
BOMEOGOA_00731	6.01e-45	yqgQ	-	-	S	-	-	-	Bacterial protein of unknown function (DUF910)
BOMEOGOA_00732	1.26e-91	yqhL	-	-	P	-	-	-	Rhodanese-like protein
BOMEOGOA_00733	4.1e-221	miaA	2.5.1.75	-	F	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	ko00000,ko00001,ko01000,ko01006,ko03016	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BOMEOGOA_00734	3.42e-92	-	-	-	L	-	-	-	IS1381, transposase OrfA
BOMEOGOA_00735	3.47e-25	ynbB	-	-	P	-	-	-	aluminum resistance
BOMEOGOA_00736	5.43e-77	ynbB	-	-	P	-	-	-	aluminum resistance
BOMEOGOA_00737	0.0	glnA	6.3.1.2	-	E	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	ko00000,ko00001,ko01000,ko04147	glutamine synthetase
BOMEOGOA_00738	1.67e-140	-	-	-	-	-	-	-	-
BOMEOGOA_00739	1.93e-212	-	-	-	-	-	-	-	-
BOMEOGOA_00740	1.19e-205	-	-	-	-	-	-	-	-
BOMEOGOA_00741	1.04e-197	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00743	5.48e-59	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00744	0.0	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00745	6.23e-244	galE	5.1.3.2	-	M	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family
BOMEOGOA_00746	3.88e-241	lacM	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	beta-galactosidase
BOMEOGOA_00747	0.0	lacL	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
BOMEOGOA_00748	6.27e-155	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_00749	3.08e-242	lacR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
BOMEOGOA_00750	1.3e-28	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
BOMEOGOA_00751	2.23e-53	-	-	-	G	-	-	-	MFS/sugar transport protein
BOMEOGOA_00752	2.95e-83	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
BOMEOGOA_00753	9.15e-76	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
BOMEOGOA_00754	0.0	lacS	-	-	G	ko:K11104,ko:K16209	-	ko00000,ko02000	Transporter
BOMEOGOA_00755	1.06e-99	lacZ	3.2.1.23	-	G	ko:K12308	ko00052,map00052	ko00000,ko00001,ko01000	-beta-galactosidase
BOMEOGOA_00756	4.58e-117	lacZ	3.2.1.23	-	G	ko:K12308	ko00052,map00052	ko00000,ko00001,ko01000	-beta-galactosidase
BOMEOGOA_00757	2.15e-301	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00758	2.83e-206	aroE	1.1.1.25	-	E	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BOMEOGOA_00759	2.07e-261	-	-	-	G	-	-	-	Major Facilitator Superfamily
BOMEOGOA_00760	1.82e-123	aroD	4.2.1.10	-	E	ko:K03785	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate
BOMEOGOA_00761	2.1e-24	aroD	4.2.1.10	-	E	ko:K03785	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate
BOMEOGOA_00762	0.0	fhs	6.3.4.3	-	F	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the formate--tetrahydrofolate ligase family
BOMEOGOA_00763	4.1e-111	purE	5.4.99.18	-	F	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BOMEOGOA_00764	6.88e-279	purK	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BOMEOGOA_00765	7.17e-172	purC	6.3.2.6	-	F	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the SAICAR synthetase family
BOMEOGOA_00766	1.01e-51	purS	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BOMEOGOA_00767	4.51e-163	purQ	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BOMEOGOA_00768	0.0	purL	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BOMEOGOA_00769	0.0	purF	2.4.2.14	-	F	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BOMEOGOA_00770	4.12e-254	purM	6.3.3.1	-	F	ko:K01933	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoribosylformylglycinamidine cyclo-ligase
BOMEOGOA_00771	0.0	purH	2.1.2.3, 3.5.4.10	-	F	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	ko00000,ko00001,ko00002,ko01000,ko04147	Bifunctional purine biosynthesis protein PurH
BOMEOGOA_00772	2.66e-310	purD	6.3.4.13	-	F	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the GARS family
BOMEOGOA_00773	2.95e-201	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00774	3.75e-69	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00775	1.1e-119	XK27_10475	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
BOMEOGOA_00776	2.6e-86	rpiA1	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
BOMEOGOA_00777	1.74e-188	-	-	-	K	-	-	-	SIS domain
BOMEOGOA_00778	6.28e-222	yufQ	-	-	S	ko:K02057	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
BOMEOGOA_00779	9.63e-270	mglC	-	-	S	ko:K02057	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
BOMEOGOA_00780	0.0	mglA	3.6.3.17	-	S	ko:K02056,ko:K06400	-	ko00000,ko00002,ko01000,ko02000	ABC transporter
BOMEOGOA_00781	1.13e-248	tcsA	-	-	S	ko:K02058,ko:K07335	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein PnrA-like
BOMEOGOA_00783	4.9e-202	-	-	-	V	-	-	-	ABC transporter transmembrane region
BOMEOGOA_00784	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00785	7.28e-26	-	-	-	-	-	-	-	-
BOMEOGOA_00786	1.46e-247	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00787	9.68e-42	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00788	1.56e-277	-	-	-	EGP	ko:K08196	-	ko00000,ko02000	Major Facilitator
BOMEOGOA_00789	0.0	XK27_00340	3.1.3.5	-	F	ko:K01081	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
BOMEOGOA_00790	3.27e-170	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter
BOMEOGOA_00791	5.08e-26	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter
BOMEOGOA_00792	1.95e-94	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter
BOMEOGOA_00793	6.52e-123	-	-	-	Q	-	-	-	Imidazolonepropionase and related amidohydrolases
BOMEOGOA_00794	3.41e-66	-	-	-	Q	-	-	-	Imidazolonepropionase and related amidohydrolases
BOMEOGOA_00795	1.19e-49	-	-	-	Q	-	-	-	Imidazolonepropionase and related amidohydrolases
BOMEOGOA_00798	1.99e-283	galK	2.7.1.6	-	F	ko:K00849	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
BOMEOGOA_00799	0.0	galT	2.7.7.12	-	G	ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	ko00000,ko00001,ko00002,ko01000	UDP-glucose--hexose-1-phosphate uridylyltransferase
BOMEOGOA_00800	7.95e-252	galM	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of alpha and beta anomers of maltose
BOMEOGOA_00801	1.76e-85	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00802	2.43e-161	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_00803	8.18e-15	dltr	-	-	K	-	-	-	response regulator
BOMEOGOA_00804	2.88e-33	dltr	-	-	K	-	-	-	response regulator
BOMEOGOA_00805	1.68e-49	sptS	-	-	T	-	-	-	Histidine kinase
BOMEOGOA_00806	3.13e-70	sptS	-	-	T	-	-	-	Histidine kinase
BOMEOGOA_00807	5.78e-268	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
BOMEOGOA_00808	2.64e-94	-	-	-	O	-	-	-	OsmC-like protein
BOMEOGOA_00809	3.83e-165	-	-	-	S	-	-	-	L-ascorbic acid biosynthetic process
BOMEOGOA_00810	1.43e-141	-	-	-	-	-	-	-	-
BOMEOGOA_00811	3.71e-63	-	-	-	-	-	-	-	-
BOMEOGOA_00812	1.83e-75	-	-	-	-	-	-	-	-
BOMEOGOA_00813	3.9e-121	-	-	-	-	-	-	-	-
BOMEOGOA_00814	2.64e-295	tcaA	-	-	S	ko:K21463	-	ko00000	response to antibiotic
BOMEOGOA_00815	0.0	hsdR	3.1.21.3	-	L	ko:K01153	-	ko00000,ko01000,ko02048	DEAD/DEAH box helicase
BOMEOGOA_00816	0.0	hsdM	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	type I restriction-modification system
BOMEOGOA_00817	6.25e-131	-	3.1.21.3	-	V	ko:K01154	-	ko00000,ko01000,ko02048	Type I restriction modification DNA specificity domain
BOMEOGOA_00818	9.43e-161	-	-	-	K	-	-	-	SIR2-like domain
BOMEOGOA_00819	3.1e-34	-	-	-	S	ko:K07126	-	ko00000	Sel1-like repeats.
BOMEOGOA_00820	4.13e-42	-	-	-	-	-	-	-	-
BOMEOGOA_00821	3.43e-30	-	-	-	-	-	-	-	-
BOMEOGOA_00823	3.8e-35	-	-	-	-	-	-	-	-
BOMEOGOA_00824	1.52e-29	-	-	-	G	-	-	-	Peptidase_C39 like family
BOMEOGOA_00825	8.65e-145	-	-	-	G	-	-	-	Peptidase_C39 like family
BOMEOGOA_00826	1.78e-151	-	-	-	M	-	-	-	NlpC/P60 family
BOMEOGOA_00827	3.43e-28	-	-	-	M	-	-	-	NlpC/P60 family
BOMEOGOA_00828	2.29e-15	-	-	-	M	-	-	-	NlpC/P60 family
BOMEOGOA_00829	1.44e-57	-	2.1.1.113	-	L	ko:K00590	-	ko00000,ko01000,ko02048	Belongs to the N(4) N(6)-methyltransferase family
BOMEOGOA_00830	6.86e-19	-	-	-	V	-	-	-	site-specific DNA-methyltransferase (adenine-specific) activity
BOMEOGOA_00831	8.04e-224	-	-	-	M	-	-	-	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BOMEOGOA_00832	2.83e-69	-	-	-	S	-	-	-	Enterocin A Immunity
BOMEOGOA_00833	1.88e-239	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00834	1.35e-32	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00835	3.43e-28	-	-	-	M	-	-	-	NlpC/P60 family
BOMEOGOA_00836	2.29e-15	-	-	-	M	-	-	-	NlpC/P60 family
BOMEOGOA_00837	9.82e-75	-	-	-	-	-	-	-	-
BOMEOGOA_00839	0.0	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00840	4.99e-73	-	-	-	-	-	-	-	-
BOMEOGOA_00841	2.09e-35	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
BOMEOGOA_00842	1.28e-201	sdaAA	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
BOMEOGOA_00843	1.43e-28	-	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	Serine dehydratase beta chain
BOMEOGOA_00844	6.48e-96	-	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	Serine dehydratase beta chain
BOMEOGOA_00845	1.56e-62	-	-	-	-	-	-	-	-
BOMEOGOA_00846	1.22e-31	-	-	-	-	-	-	-	-
BOMEOGOA_00847	7.66e-251	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00848	2.84e-150	pgm1	-	-	G	-	-	-	phosphoglycerate mutase
BOMEOGOA_00849	2.5e-263	serC	2.6.1.52	-	E	ko:K00831	ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BOMEOGOA_00850	8.7e-278	serA	1.1.1.399, 1.1.1.95	-	EH	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOMEOGOA_00851	3.98e-39	sugE	-	-	U	ko:K11741	-	ko00000,ko02000	Multidrug resistance protein
BOMEOGOA_00852	2.1e-53	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
BOMEOGOA_00853	1.48e-252	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00854	3.53e-314	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_00855	1.55e-263	-	-	-	G	-	-	-	Major Facilitator Superfamily
BOMEOGOA_00856	2.44e-25	-	-	-	-	-	-	-	-
BOMEOGOA_00857	9.71e-30	-	-	-	L	ko:K07484	-	ko00000	IS66 Orf2 like protein
BOMEOGOA_00858	2.9e-69	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00859	1.38e-121	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_00861	0.0	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
BOMEOGOA_00862	2.77e-30	-	-	-	-	-	-	-	-
BOMEOGOA_00863	5.7e-44	-	-	-	-	-	-	-	-
BOMEOGOA_00864	4.13e-148	glnP9	-	-	P	ko:K02029	-	ko00000,ko00002,ko02000	ABC transporter, permease protein
BOMEOGOA_00865	9.35e-152	glnP7	-	-	P	ko:K02029	-	ko00000,ko00002,ko02000	ABC transporter permease
BOMEOGOA_00866	1.97e-173	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_00867	2.63e-207	cjaA	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein
BOMEOGOA_00868	2.27e-69	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
BOMEOGOA_00869	1.71e-126	-	-	-	S	-	-	-	Cysteine-rich secretory protein family
BOMEOGOA_00870	2.18e-259	-	-	-	G	-	-	-	Major Facilitator Superfamily
BOMEOGOA_00871	1.16e-41	-	-	-	-	-	-	-	-
BOMEOGOA_00872	9.54e-67	-	-	-	O	-	-	-	Matrixin
BOMEOGOA_00873	2.11e-294	eriC	-	-	P	ko:K03281	-	ko00000	chloride
BOMEOGOA_00874	0.0	yoaB	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
BOMEOGOA_00875	1.14e-142	yufQ	-	-	S	ko:K02057	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
BOMEOGOA_00876	2.72e-37	yufQ	-	-	S	ko:K02057	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
BOMEOGOA_00877	3.57e-72	mglC	-	-	S	ko:K02057	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
BOMEOGOA_00878	1.53e-11	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_00879	1.72e-28	-	-	-	S	ko:K18918	-	ko00000,ko02048,ko03000	RelB antitoxin
BOMEOGOA_00880	1.92e-147	pyrE	2.4.2.10	-	F	ko:K00762	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BOMEOGOA_00881	2.69e-165	pyrF	4.1.1.23	-	F	ko:K01591	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
BOMEOGOA_00882	3.21e-214	pyrD	1.3.1.14, 1.3.98.1	-	F	ko:K00226,ko:K17828	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
BOMEOGOA_00883	3.53e-123	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
BOMEOGOA_00884	6.64e-233	pyrB	2.1.3.2	-	F	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the ATCase OTCase family
BOMEOGOA_00885	4.3e-315	pyrC	3.5.2.3	-	F	ko:K01465	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
BOMEOGOA_00886	8.52e-269	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
BOMEOGOA_00887	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
BOMEOGOA_00888	5.69e-61	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_00889	3.9e-52	-	-	-	-	-	-	-	-
BOMEOGOA_00892	4.46e-195	-	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
BOMEOGOA_00893	7.75e-65	-	-	-	-	-	-	-	-
BOMEOGOA_00894	1.59e-96	msrB	1.8.4.12	-	O	ko:K07305	-	ko00000,ko01000	peptide methionine sulfoxide reductase
BOMEOGOA_00895	1.28e-62	-	-	-	-	-	-	-	-
BOMEOGOA_00896	5.11e-106	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BOMEOGOA_00897	1.7e-189	-	-	-	S	-	-	-	Protein of unknown function (DUF2785)
BOMEOGOA_00898	9.76e-36	-	-	-	S	-	-	-	MazG-like family
BOMEOGOA_00899	1.75e-26	-	-	-	-	-	-	-	-
BOMEOGOA_00900	7.55e-58	-	-	-	-	ko:K07473	-	ko00000,ko02048	-
BOMEOGOA_00901	1.78e-42	-	-	-	S	-	-	-	Protein of unknown function (DUF3923)
BOMEOGOA_00902	1.23e-67	yjhB	3.6.1.13	-	F	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	NUDIX domain
BOMEOGOA_00903	3.73e-206	yxaM	-	-	EGP	-	-	-	Major facilitator Superfamily
BOMEOGOA_00904	8.78e-30	codA	-	-	F	-	-	-	Cytidine and deoxycytidylate deaminase zinc-binding region
BOMEOGOA_00905	3.73e-44	cdd	2.4.2.4, 3.5.4.5	-	F	ko:K00758,ko:K01489	ko00240,ko00983,ko01100,ko05219,map00240,map00983,map01100,map05219	ko00000,ko00001,ko01000	cytidine deaminase activity
BOMEOGOA_00906	2.64e-119	-	-	-	S	-	-	-	AAA domain
BOMEOGOA_00907	2.92e-192	-	-	-	M	-	-	-	Phosphotransferase enzyme family
BOMEOGOA_00908	2.14e-185	-	-	-	F	-	-	-	Phosphorylase superfamily
BOMEOGOA_00909	5.9e-183	-	-	-	F	-	-	-	Phosphorylase superfamily
BOMEOGOA_00910	9.88e-152	-	2.3.1.81	-	V	ko:K00662	-	ko00000,ko01000,ko01504	Aminoglycoside 3-N-acetyltransferase
BOMEOGOA_00911	0.0	pepX	3.4.14.11	-	E	ko:K01281	-	ko00000,ko01000,ko01002	Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
BOMEOGOA_00912	7.06e-30	-	-	-	-	-	-	-	-
BOMEOGOA_00913	6.33e-87	yusI	1.20.4.1	-	P	ko:K00537	-	ko00000,ko01000	Belongs to the ArsC family
BOMEOGOA_00914	1.5e-228	lipA	-	-	I	-	-	-	Carboxylesterase family
BOMEOGOA_00916	9.35e-271	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
BOMEOGOA_00917	0.0	-	-	-	S	-	-	-	Predicted membrane protein (DUF2207)
BOMEOGOA_00918	4.18e-38	dmpI	5.3.2.6	-	G	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Belongs to the 4-oxalocrotonate tautomerase family
BOMEOGOA_00919	4.22e-149	-	-	-	S	-	-	-	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
BOMEOGOA_00920	1.07e-137	-	-	-	L	-	-	-	Resolvase, N terminal domain
BOMEOGOA_00921	0.0	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_00922	3.98e-257	ilvE	2.6.1.42	-	E	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Branched-chain amino acid aminotransferase
BOMEOGOA_00923	0.0	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2325)
BOMEOGOA_00924	6.82e-66	rplU	-	-	J	ko:K02888	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to 23S rRNA in the presence of protein L20
BOMEOGOA_00925	1.6e-63	rpmA	-	-	J	ko:K02899	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL27 family
BOMEOGOA_00926	6.96e-263	pepP	3.4.11.9, 3.4.13.9	-	E	ko:K01262,ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
BOMEOGOA_00927	7.35e-134	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BOMEOGOA_00928	1.39e-92	WQ51_04310	-	-	S	ko:K10947	-	ko00000,ko03000	Asp23 family, cell envelope-related function
BOMEOGOA_00929	1.28e-85	nusB	-	-	K	ko:K03625	-	ko00000,ko03009,ko03021	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BOMEOGOA_00930	4.01e-200	folD	1.5.1.5, 3.5.4.9	-	F	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BOMEOGOA_00931	1.45e-20	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00932	4.01e-200	folD	1.5.1.5, 3.5.4.9	-	F	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BOMEOGOA_00933	5.59e-251	xseA	3.1.11.6	-	L	ko:K03601	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
BOMEOGOA_00934	4.4e-47	xseB	3.1.11.6	-	L	ko:K03602	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
BOMEOGOA_00935	2.25e-205	ispA	2.5.1.1, 2.5.1.10, 2.5.1.29	-	H	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01006	Belongs to the FPP GGPP synthase family
BOMEOGOA_00936	3.43e-195	rrmJ	2.1.1.226, 2.1.1.227	-	J	ko:K06442	-	ko00000,ko01000,ko03009	Ribosomal RNA large subunit methyltransferase J
BOMEOGOA_00937	0.0	recN	-	-	L	ko:K03631	-	ko00000,ko03400	May be involved in recombinational repair of damaged DNA
BOMEOGOA_00938	2.1e-103	-	-	-	S	-	-	-	ASCH
BOMEOGOA_00939	9.04e-108	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00940	3.59e-40	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_00941	5.21e-53	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_00942	5.8e-149	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_00943	1.64e-215	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_00944	7.26e-146	gmk	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Essential for recycling GMP and indirectly, cGMP
BOMEOGOA_00945	1.67e-46	rpoZ	2.7.7.6	-	K	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
BOMEOGOA_00946	0.0	priA	-	-	L	ko:K04066	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BOMEOGOA_00947	2.37e-222	fmt	2.1.2.9	-	J	ko:K00604	ko00670,ko00970,map00670,map00970	ko00000,ko00001,ko01000	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BOMEOGOA_00948	4.49e-315	sun	2.1.1.176	-	J	ko:K03500	-	ko00000,ko01000,ko03009	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BOMEOGOA_00949	8.11e-190	stp	3.1.3.16	-	T	ko:K20074	-	ko00000,ko01000,ko01009	phosphatase
BOMEOGOA_00950	0.0	prkC	2.7.11.1	-	KLT	ko:K08884,ko:K12132	-	ko00000,ko01000,ko01001	serine threonine protein kinase
BOMEOGOA_00951	2.26e-213	rsgA	3.1.3.100	-	S	ko:K06949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
BOMEOGOA_00952	2.51e-152	rpe	5.1.3.1	-	G	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ribulose-phosphate 3-epimerase family
BOMEOGOA_00953	8.07e-164	thiN	2.7.6.2	-	H	ko:K00949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000	thiamine pyrophosphokinase
BOMEOGOA_00954	4.3e-68	-	-	-	-	-	-	-	-
BOMEOGOA_00955	1.33e-35	rpmB	-	-	J	ko:K02902	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL28 family
BOMEOGOA_00956	1.67e-74	yloU	-	-	S	-	-	-	Asp23 family, cell envelope-related function
BOMEOGOA_00957	0.0	yloV	-	-	S	ko:K07030	-	ko00000	DAK2 domain fusion protein YloV
BOMEOGOA_00958	0.0	recG	3.6.4.12	-	L	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BOMEOGOA_00959	3.69e-233	plsX	2.3.1.15	-	I	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
BOMEOGOA_00960	5.34e-48	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOMEOGOA_00961	6.3e-251	oppD	-	-	P	ko:K02031,ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
BOMEOGOA_00962	1.76e-233	oppF	-	-	P	ko:K02032	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
BOMEOGOA_00963	7.39e-226	oppB	-	-	P	ko:K02033,ko:K02034	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BOMEOGOA_00964	3.53e-203	oppC5	-	-	P	ko:K02034	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BOMEOGOA_00965	0.0	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
BOMEOGOA_00966	4.99e-29	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
BOMEOGOA_00967	5.34e-40	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
BOMEOGOA_00968	2.32e-260	oppA	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
BOMEOGOA_00969	9.04e-161	rnc	3.1.26.3	-	J	ko:K03685	ko03008,ko05205,map03008,map05205	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
BOMEOGOA_00970	0.0	smc	-	-	D	ko:K03529	-	ko00000,ko03036	Required for chromosome condensation and partitioning
BOMEOGOA_00971	4.9e-234	ftsY	-	-	U	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
BOMEOGOA_00972	0.0	pepD2	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
BOMEOGOA_00973	7.95e-59	-	-	-	-	-	-	-	-
BOMEOGOA_00974	0.0	ctrA	-	-	E	ko:K03294	-	ko00000	amino acid
BOMEOGOA_00975	2.14e-174	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
BOMEOGOA_00976	1.17e-73	ylxM	-	-	S	ko:K09787	-	ko00000	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
BOMEOGOA_00977	1.34e-289	ffh	3.6.5.4	-	U	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko01000,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BOMEOGOA_00978	2.36e-60	rpsP	-	-	J	ko:K02959	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bS16 family
BOMEOGOA_00979	4.2e-122	rimM	-	-	J	ko:K02860	-	ko00000,ko03009	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BOMEOGOA_00980	2.41e-175	trmD	2.1.1.228	-	J	ko:K00554	-	ko00000,ko01000,ko03016	Belongs to the RNA methyltransferase TrmD family
BOMEOGOA_00981	2.28e-74	rplS	-	-	J	ko:K02884	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
BOMEOGOA_00982	1.4e-155	ung2	3.2.2.27	-	L	ko:K21929	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Uracil-DNA glycosylase
BOMEOGOA_00983	1.35e-192	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase family
BOMEOGOA_00984	1.46e-147	lexA	3.4.21.88	-	K	ko:K01356	-	ko00000,ko00002,ko01000,ko01002,ko03400	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BOMEOGOA_00985	3.19e-50	ynzC	-	-	S	-	-	-	UPF0291 protein
BOMEOGOA_00986	1.3e-40	XK26_06720	-	-	S	ko:K09976	-	ko00000	Uncharacterised protein family (UPF0154)
BOMEOGOA_00987	1.47e-315	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_00988	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
BOMEOGOA_00989	1.88e-295	cfa	2.1.1.79	-	M	ko:K00574	-	ko00000,ko01000	cyclopropane-fatty-acyl-phospholipid synthase
BOMEOGOA_00990	2.26e-149	plsC	2.3.1.51	-	I	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Acyltransferase
BOMEOGOA_00991	3.01e-253	yabB	2.1.1.223	-	L	ko:K07461,ko:K15460	-	ko00000,ko01000,ko03016	Methyltransferase small domain
BOMEOGOA_00992	1.1e-180	rpsB	-	-	J	ko:K02967	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS2 family
BOMEOGOA_00993	5.27e-237	tsf	-	-	J	ko:K02357	-	ko00000,ko03012,ko03029	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BOMEOGOA_00994	2.38e-167	pyrH	2.7.4.22	-	F	ko:K09903	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphorylation of UMP to UDP
BOMEOGOA_00995	3.49e-121	frr	-	-	J	ko:K02838	-	ko00000,ko03012	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
BOMEOGOA_00996	2.6e-177	uppS	2.5.1.31	-	H	ko:K00806	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BOMEOGOA_00997	1.62e-189	cdsA	2.7.7.41	-	I	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the CDS family
BOMEOGOA_00998	9.05e-254	rseP	-	-	M	ko:K11749	ko02024,ko04112,map02024,map04112	ko00000,ko00001,ko01000,ko01002	zinc metalloprotease
BOMEOGOA_00999	0.0	proS	6.1.1.15	-	J	ko:K01881	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
BOMEOGOA_01000	0.0	polC	2.7.7.7	-	L	ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BOMEOGOA_01001	2.39e-108	rimP	-	-	J	ko:K09748	-	ko00000,ko03009	Required for maturation of 30S ribosomal subunits
BOMEOGOA_01002	1.72e-266	nusA	-	-	K	ko:K02600	-	ko00000,ko03009,ko03021	Participates in both transcription termination and antitermination
BOMEOGOA_01003	9.2e-64	ylxR	-	-	K	ko:K07742	-	ko00000	Protein of unknown function (DUF448)
BOMEOGOA_01004	1.32e-63	ylxQ	-	-	J	-	-	-	ribosomal protein
BOMEOGOA_01005	0.0	infB	-	-	J	ko:K02519	-	ko00000,ko03012,ko03029	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BOMEOGOA_01006	6.79e-79	rbfA	-	-	J	ko:K02834	-	ko00000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BOMEOGOA_01007	7.01e-213	truB	5.4.99.25	-	J	ko:K03177,ko:K03483	-	ko00000,ko01000,ko03000,ko03016	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BOMEOGOA_01008	1.1e-232	ribF	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the ribF family
BOMEOGOA_01009	3.57e-239	hrcA	-	-	K	ko:K03705	-	ko00000,ko03000	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
BOMEOGOA_01010	5.17e-113	grpE	-	-	O	ko:K03687	-	ko00000,ko03029,ko03110	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BOMEOGOA_01011	0.0	dnaK	-	-	O	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Heat shock 70 kDa protein
BOMEOGOA_01012	1.08e-269	dnaJ	-	-	O	ko:K03686	-	ko00000,ko03029,ko03110	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
BOMEOGOA_01013	1.13e-104	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01014	4.52e-30	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01015	0.0	lepA	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
BOMEOGOA_01016	4.27e-155	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	sortase family
BOMEOGOA_01017	0.0	recJ	-	-	L	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	ko00000,ko00001,ko01000,ko03400	Single-stranded-DNA-specific exonuclease RecJ
BOMEOGOA_01018	2.41e-123	apt	2.4.2.7	-	F	ko:K00759	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000,ko04147	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BOMEOGOA_01019	1.42e-218	cysK	2.5.1.47	-	E	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the cysteine synthase cystathionine beta- synthase family
BOMEOGOA_01020	2.62e-196	metA	2.3.1.46	-	E	ko:K00651	ko00270,ko00920,ko01100,ko01110,ko01230,map00270,map00920,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Transfers an acetyl group from acetyl-CoA to
BOMEOGOA_01021	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BOMEOGOA_01022	1.12e-110	-	3.4.21.96	-	S	ko:K01361	-	ko00000,ko01000,ko01002,ko03110	SLAP domain
BOMEOGOA_01023	0.0	-	-	-	P	-	-	-	Cation transporter/ATPase, N-terminus
BOMEOGOA_01024	1.78e-204	lysR5	-	-	K	-	-	-	LysR substrate binding domain
BOMEOGOA_01025	1.32e-33	arcA	3.5.3.6	-	E	ko:K01478	ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130	ko00000,ko00001,ko01000	Arginine
BOMEOGOA_01026	2.05e-67	arcA	3.5.3.6	-	E	ko:K01478	ko00220,ko01100,ko01110,ko01130,map00220,map01100,map01110,map01130	ko00000,ko00001,ko01000	Arginine
BOMEOGOA_01027	2.93e-259	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01028	7.7e-17	argF	2.1.3.3	-	E	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BOMEOGOA_01029	3.99e-182	argF	2.1.3.3	-	E	ko:K00611	ko00220,ko01100,ko01110,ko01130,ko01230,map00220,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BOMEOGOA_01030	5.3e-89	arcC	2.7.2.2	-	E	ko:K00926	ko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200	ko00000,ko00001,ko01000	Belongs to the carbamate kinase family
BOMEOGOA_01031	1.33e-66	arcC	2.7.2.2	-	E	ko:K00926	ko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200	ko00000,ko00001,ko01000	Belongs to the carbamate kinase family
BOMEOGOA_01032	2.22e-125	citX	2.7.7.61	-	HI	ko:K05964	ko02020,map02020	ko00000,ko00001,ko01000	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
BOMEOGOA_01033	7.78e-281	-	-	-	S	-	-	-	Sterol carrier protein domain
BOMEOGOA_01034	2.75e-27	-	-	-	-	-	-	-	-
BOMEOGOA_01035	4.03e-137	-	-	-	K	-	-	-	LysR substrate binding domain
BOMEOGOA_01036	1.32e-251	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_01037	2.96e-116	-	-	-	-	-	-	-	-
BOMEOGOA_01038	1.31e-210	yitT	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BOMEOGOA_01039	4.62e-251	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_01040	9.78e-135	-	-	-	S	-	-	-	Peptidase family M23
BOMEOGOA_01041	5.47e-196	yqfL	2.7.11.33, 2.7.4.28	-	F	ko:K09773	-	ko00000,ko01000	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation
BOMEOGOA_01042	4.83e-30	rpsU	-	-	J	ko:K02970	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bS21 family
BOMEOGOA_01043	5.12e-91	yqeY	-	-	S	ko:K09117	-	ko00000	YqeY-like protein
BOMEOGOA_01044	1.05e-225	phoH	-	-	T	ko:K06217	-	ko00000	phosphate starvation-inducible protein PhoH
BOMEOGOA_01045	1.52e-130	ybeY	-	-	S	ko:K07042	-	ko00000,ko03009	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BOMEOGOA_01046	3.48e-215	era	-	-	S	ko:K03595	-	ko00000,ko03009,ko03029	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BOMEOGOA_01047	2.79e-175	recO	-	-	L	ko:K03584	ko03440,map03440	ko00000,ko00001,ko03400	Involved in DNA repair and RecF pathway recombination
BOMEOGOA_01048	2.22e-229	glyQ	6.1.1.14	-	J	ko:K01878	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	glycyl-tRNA synthetase alpha subunit
BOMEOGOA_01049	0.0	glyS	6.1.1.14	-	J	ko:K01879	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Glycyl-tRNA synthetase beta subunit
BOMEOGOA_01050	0.0	dnaG	-	-	L	ko:K02316	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
BOMEOGOA_01051	3.66e-254	sigA	-	-	K	ko:K03086	-	ko00000,ko03021	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
BOMEOGOA_01052	1.03e-161	-	-	-	S	-	-	-	Peptidase family M23
BOMEOGOA_01053	6.64e-41	-	3.6.1.55	-	F	ko:K03574	-	ko00000,ko01000,ko03400	NUDIX domain
BOMEOGOA_01054	1.1e-161	trmK	2.1.1.217	-	S	ko:K06967	-	ko00000,ko01000,ko03016	SAM-dependent methyltransferase
BOMEOGOA_01055	4.19e-198	yqfO	-	-	S	-	-	-	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BOMEOGOA_01056	6.01e-309	pepT	3.4.11.4	-	E	ko:K01258	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
BOMEOGOA_01057	8.26e-80	lexA	-	-	K	ko:K07979	-	ko00000,ko03000	Transcriptional regulator, GntR family
BOMEOGOA_01058	3.13e-160	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BOMEOGOA_01059	8.63e-190	-	-	-	-	-	-	-	-
BOMEOGOA_01060	2.39e-189	-	-	-	-	-	-	-	-
BOMEOGOA_01061	1.88e-174	-	-	-	-	-	-	-	-
BOMEOGOA_01062	0.0	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
BOMEOGOA_01063	7.83e-38	-	-	-	-	-	-	-	-
BOMEOGOA_01064	2.67e-136	lepB	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
BOMEOGOA_01065	1.07e-180	-	-	-	-	-	-	-	-
BOMEOGOA_01066	1.75e-228	-	-	-	-	-	-	-	-
BOMEOGOA_01067	0.0	rsmF	-	-	J	-	-	-	NOL1 NOP2 sun family protein
BOMEOGOA_01068	2.52e-238	fni	5.3.3.2	-	C	ko:K01823	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
BOMEOGOA_01069	1.15e-261	mvaK2	2.7.4.2	-	I	ko:K00938	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	phosphomevalonate kinase
BOMEOGOA_01070	7.44e-231	mvaD	4.1.1.33	-	I	ko:K01597	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	diphosphomevalonate decarboxylase
BOMEOGOA_01071	6.51e-216	mvk	2.7.1.36	-	I	ko:K00869	ko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146	ko00000,ko00001,ko00002,ko01000	GHMP kinases N terminal domain
BOMEOGOA_01072	0.0	rexB	3.6.4.12	-	L	ko:K16899	-	ko00000,ko01000,ko03400	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
BOMEOGOA_01073	0.0	addA	3.6.4.12	-	L	ko:K16898	-	ko00000,ko01000,ko03400	ATP-dependent helicase nuclease subunit A
BOMEOGOA_01074	0.0	dinG	3.6.4.12	-	L	ko:K03722	-	ko00000,ko01000,ko03400	helicase involved in DNA repair and perhaps also replication
BOMEOGOA_01075	6.04e-117	ypmB	-	-	S	-	-	-	Protein conserved in bacteria
BOMEOGOA_01076	0.0	asnS	6.1.1.22	-	J	ko:K01893	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Asparaginyl-tRNA synthetase
BOMEOGOA_01077	1.39e-148	dnaD	-	-	L	ko:K02086	-	ko00000	DnaD domain protein
BOMEOGOA_01078	2.43e-145	nth	4.2.99.18	-	L	ko:K10773	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BOMEOGOA_01079	0.0	ponA	2.4.1.129, 3.4.16.4	GT51	M	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein 1A
BOMEOGOA_01080	3.06e-150	recU	-	-	L	ko:K03700	-	ko00000,ko03400	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
BOMEOGOA_01081	2.28e-137	ypsA	-	-	S	-	-	-	Belongs to the UPF0398 family
BOMEOGOA_01082	9.11e-92	gpsB	-	-	D	-	-	-	Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
BOMEOGOA_01083	3.54e-279	ypsC	-	-	L	ko:K07444	-	ko00000,ko01000	Belongs to the methyltransferase superfamily
BOMEOGOA_01084	7.41e-108	cpdA	-	-	S	-	-	-	Calcineurin-like phosphoesterase
BOMEOGOA_01085	7.53e-59	cpdA	-	-	S	-	-	-	Calcineurin-like phosphoesterase
BOMEOGOA_01086	2.46e-18	cpdA	-	-	S	-	-	-	Calcineurin-like phosphoesterase
BOMEOGOA_01087	0.0	fhs	6.3.4.3	-	F	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the formate--tetrahydrofolate ligase family
BOMEOGOA_01088	7.77e-103	lspA	3.4.23.36	-	MU	ko:K03101	ko03060,map03060	ko00000,ko00001,ko01000,ko01002	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BOMEOGOA_01089	5.38e-220	rluD	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
BOMEOGOA_01090	5.87e-255	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
BOMEOGOA_01091	0.0	carB1	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
BOMEOGOA_01092	0.0	FbpA	-	-	K	-	-	-	Fibronectin-binding protein
BOMEOGOA_01093	5.69e-86	-	-	-	-	-	-	-	-
BOMEOGOA_01094	5.29e-206	-	-	-	S	-	-	-	EDD domain protein, DegV family
BOMEOGOA_01095	8.11e-262	xerS	-	-	L	ko:K03733	-	ko00000,ko03036	Belongs to the 'phage' integrase family
BOMEOGOA_01096	5.54e-57	-	-	-	-	-	-	-	-
BOMEOGOA_01097	0.0	-	-	-	L	-	-	-	Transposase
BOMEOGOA_01098	1.35e-161	nth2	-	-	L	ko:K07457	-	ko00000	Base excision DNA repair protein, HhH-GPD family
BOMEOGOA_01099	8.76e-75	folB	1.13.11.81, 4.1.2.25, 5.1.99.8	-	H	ko:K01633	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BOMEOGOA_01100	2.06e-258	folE	2.7.6.3, 3.5.4.16	-	F	ko:K00950,ko:K01495	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	GTP cyclohydrolase 1
BOMEOGOA_01101	0.0	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
BOMEOGOA_01102	1.1e-256	folP	2.5.1.15	-	H	ko:K00796	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	dihydropteroate synthase
BOMEOGOA_01103	1.9e-126	-	3.6.1.67	-	F	ko:K19965	ko00790,map00790	ko00000,ko00001,ko00002,ko01000	NUDIX domain
BOMEOGOA_01104	1.08e-80	adhR	-	-	K	ko:K21745	-	ko00000,ko03000	helix_turn_helix, mercury resistance
BOMEOGOA_01105	1.32e-144	glnP9	-	-	P	ko:K02029	-	ko00000,ko00002,ko02000	ABC transporter, permease protein
BOMEOGOA_01106	1.39e-121	glnP7	-	-	P	ko:K02029	-	ko00000,ko00002,ko02000	ABC transporter permease
BOMEOGOA_01107	1.19e-174	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_01108	3.07e-206	cjaA	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein
BOMEOGOA_01109	1.03e-61	-	-	-	L	-	-	-	Helix-turn-helix domain
BOMEOGOA_01110	2.09e-54	-	-	-	L	-	-	-	Helix-turn-helix domain
BOMEOGOA_01111	2.03e-251	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
BOMEOGOA_01112	7.6e-118	dpnM	2.1.1.72	-	H	ko:K06223	ko03430,map03430	ko00000,ko00001,ko01000,ko02048,ko03032,ko03400	Site-specific DNA-methyltransferase (adenine-specific)
BOMEOGOA_01114	1.36e-151	-	-	-	L	-	-	-	Integrase
BOMEOGOA_01116	0.0	gshR3	1.8.1.7	-	C	ko:K00383	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Glutathione reductase
BOMEOGOA_01117	1.3e-80	-	-	-	K	-	-	-	Acetyltransferase (GNAT) family
BOMEOGOA_01118	3.5e-77	-	-	-	S	-	-	-	Alpha beta hydrolase
BOMEOGOA_01119	2.24e-23	-	-	-	S	ko:K06889	-	ko00000	Hydrolases of the alpha beta superfamily
BOMEOGOA_01120	3.33e-49	-	-	-	S	ko:K06889	-	ko00000	Hydrolases of the alpha beta superfamily
BOMEOGOA_01121	1.15e-184	nfrA	1.5.1.38	-	C	ko:K19285	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	nitroreductase
BOMEOGOA_01122	4.9e-39	-	1.1.1.3	-	T	ko:K00003,ko:K07166	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	phosphoserine phosphatase activity
BOMEOGOA_01123	1.05e-13	-	1.1.1.3	-	T	ko:K00003,ko:K07166	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	phosphoserine phosphatase activity
BOMEOGOA_01124	2.86e-139	-	-	-	K	ko:K09705	-	ko00000	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BOMEOGOA_01125	8.28e-117	-	-	-	K	-	-	-	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BOMEOGOA_01126	1.48e-213	-	-	-	K	-	-	-	COG COG0846 NAD-dependent protein deacetylases, SIR2 family
BOMEOGOA_01127	5.29e-121	-	-	-	K	-	-	-	acetyltransferase
BOMEOGOA_01128	1.7e-111	dps	-	-	P	ko:K04047	-	ko00000,ko03036	Belongs to the Dps family
BOMEOGOA_01129	9.94e-257	snf	-	-	KL	-	-	-	domain protein
BOMEOGOA_01130	2.5e-139	plsY	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
BOMEOGOA_01131	0.0	parE	-	-	L	ko:K02622	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
BOMEOGOA_01132	0.0	parC	-	-	L	ko:K02621	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
BOMEOGOA_01133	1.47e-218	-	-	-	K	-	-	-	Transcriptional regulator
BOMEOGOA_01134	7.36e-222	ppaC	3.6.1.1	-	C	ko:K15986	ko00190,map00190	ko00000,ko00001,ko01000	inorganic pyrophosphatase
BOMEOGOA_01135	5.37e-143	ppiB	5.2.1.8	-	G	ko:K03768	-	ko00000,ko01000,ko03110	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BOMEOGOA_01136	9.07e-73	-	-	-	K	-	-	-	Helix-turn-helix domain
BOMEOGOA_01137	2.41e-135	-	-	-	S	-	-	-	Protein of unknown function (DUF1275)
BOMEOGOA_01138	6.43e-195	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01139	8.71e-45	-	-	-	S	-	-	-	Transglycosylase associated protein
BOMEOGOA_01140	8.21e-32	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
BOMEOGOA_01141	2.43e-56	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
BOMEOGOA_01142	3.78e-52	-	-	-	-	-	-	-	-
BOMEOGOA_01143	1.35e-140	XK27_00160	-	-	S	-	-	-	Domain of unknown function (DUF5052)
BOMEOGOA_01144	2.88e-116	flaR	-	-	F	-	-	-	topology modulation protein
BOMEOGOA_01145	2.15e-94	-	-	-	-	-	-	-	-
BOMEOGOA_01146	1.5e-295	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_01147	7.65e-101	-	-	-	K	-	-	-	LytTr DNA-binding domain
BOMEOGOA_01148	2.59e-85	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
BOMEOGOA_01149	1.37e-115	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BOMEOGOA_01150	0.0	-	-	-	-	-	-	-	-
BOMEOGOA_01151	0.0	ppc	4.1.1.31	-	H	ko:K01595	ko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BOMEOGOA_01152	1e-81	-	-	-	L	-	-	-	IS1381, transposase OrfA
BOMEOGOA_01153	7.23e-218	flp	-	-	V	-	-	-	Beta-lactamase
BOMEOGOA_01154	0.0	pepV	3.5.1.18	-	E	ko:K01270,ko:K01274,ko:K01439	ko00300,ko00480,ko01100,ko01120,ko01230,map00300,map00480,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	dipeptidase PepV
BOMEOGOA_01155	1.69e-298	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_01156	2.99e-314	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
BOMEOGOA_01157	2.03e-73	-	-	-	-	-	-	-	-
BOMEOGOA_01158	1.66e-115	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase, class I
BOMEOGOA_01159	4.32e-62	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase, class I
BOMEOGOA_01160	8.9e-51	-	-	-	-	-	-	-	-
BOMEOGOA_01161	3.42e-268	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01162	1.89e-133	-	-	-	S	ko:K07038	-	ko00000	LexA-binding, inner membrane-associated putative hydrolase
BOMEOGOA_01163	4.7e-32	-	-	-	-	-	-	-	-
BOMEOGOA_01164	1.15e-122	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
BOMEOGOA_01166	4.56e-45	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01167	5.31e-194	-	-	-	L	ko:K07496	-	ko00000	Transposase
BOMEOGOA_01168	4.4e-32	-	1.8.1.7	-	C	ko:K00383,ko:K21739	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Pyridine nucleotide-disulfide oxidoreductase
BOMEOGOA_01169	6.28e-312	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
BOMEOGOA_01170	5.94e-42	ybgF	-	-	E	ko:K02205,ko:K03293,ko:K16235,ko:K16236	-	ko00000,ko02000	amino acid
BOMEOGOA_01171	6.09e-165	ybgF	-	-	E	ko:K02205,ko:K03293,ko:K16235,ko:K16236	-	ko00000,ko02000	amino acid
BOMEOGOA_01172	1.2e-33	ybgF	-	-	E	ko:K02205,ko:K03293,ko:K16235,ko:K16236	-	ko00000,ko02000	amino acid
BOMEOGOA_01173	2.16e-222	mmuM	2.1.1.10	-	H	ko:K00547	ko00270,ko01100,ko01110,map00270,map01100,map01110	ko00000,ko00001,ko01000	homocysteine S-methyltransferase
BOMEOGOA_01174	5.18e-294	amd	-	-	E	-	-	-	Peptidase family M20/M25/M40
BOMEOGOA_01175	3.37e-48	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01176	7.85e-302	steT	-	-	E	ko:K03294	-	ko00000	amino acid
BOMEOGOA_01177	4.97e-81	-	-	-	S	ko:K07006	-	ko00000	Pyridoxamine 5'-phosphate oxidase
BOMEOGOA_01178	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
BOMEOGOA_01179	3.86e-125	-	-	-	-	-	-	-	-
BOMEOGOA_01180	9.98e-62	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_01181	2.7e-278	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_01182	0.0	prtP	3.4.21.96	-	O	ko:K01361	-	ko00000,ko01000,ko01002,ko03110	Belongs to the peptidase S8 family
BOMEOGOA_01183	1.29e-135	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01184	4.36e-169	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01185	1.42e-138	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_01186	3.66e-94	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_01187	4.66e-34	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01188	3.24e-105	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01189	1.11e-51	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01190	6.92e-206	-	5.2.1.8	-	M	ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
BOMEOGOA_01191	5.59e-78	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01192	1.42e-107	-	-	-	S	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01193	1.42e-179	-	-	-	S	-	-	-	Protein of unknown function (DUF3100)
BOMEOGOA_01194	1.05e-313	-	-	-	S	ko:K12941	-	ko00000,ko01002	Peptidase dimerisation domain
BOMEOGOA_01195	7.53e-73	-	-	-	L	-	-	-	IS1381, transposase OrfA
BOMEOGOA_01196	7.39e-54	-	-	-	L	-	-	-	helicase
BOMEOGOA_01197	7.59e-215	-	-	-	L	ko:K07448	-	ko00000,ko02048	restriction endonuclease
BOMEOGOA_01198	5.54e-88	-	-	-	S	-	-	-	ASCH domain
BOMEOGOA_01199	4.46e-283	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01200	5.34e-137	msrA	1.8.4.11, 1.8.4.12	-	O	ko:K07304,ko:K12267	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BOMEOGOA_01201	2.37e-104	-	-	-	-	-	-	-	-
BOMEOGOA_01202	0.0	-	-	-	-	-	-	-	-
BOMEOGOA_01203	0.0	treC	3.2.1.93	GH13	G	ko:K01226	ko00500,map00500	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
BOMEOGOA_01204	1.01e-168	treR	-	-	K	ko:K03486	-	ko00000,ko03000	UTRA
BOMEOGOA_01205	0.0	treB	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BOMEOGOA_01206	3.14e-82	-	-	-	L	-	-	-	IS1381, transposase OrfA
BOMEOGOA_01207	9.32e-249	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_01208	9.66e-161	-	-	-	V	ko:K01992	-	ko00000,ko00002,ko02000	Transport permease protein
BOMEOGOA_01209	5.12e-159	-	-	-	V	ko:K01992	-	ko00000,ko00002,ko02000	Transport permease protein
BOMEOGOA_01210	3.38e-173	natA	3.6.3.7	-	CP	ko:K01990,ko:K09697	ko02010,ko02020,map02010,map02020	ko00000,ko00001,ko00002,ko01000,ko02000	ATPases associated with a variety of cellular activities
BOMEOGOA_01211	1.51e-53	-	-	-	-	-	-	-	-
BOMEOGOA_01212	1.67e-49	-	-	-	-	-	-	-	-
BOMEOGOA_01213	0.0	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
BOMEOGOA_01214	4.85e-46	-	-	-	KLT	-	-	-	serine threonine protein kinase
BOMEOGOA_01215	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
BOMEOGOA_01216	3.51e-33	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01217	3.83e-179	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01218	0.0	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
BOMEOGOA_01219	4.84e-24	-	-	-	-	-	-	-	-
BOMEOGOA_01220	0.0	mutS1	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
BOMEOGOA_01221	9.74e-98	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
BOMEOGOA_01222	1.96e-98	-	-	-	K	-	-	-	LytTr DNA-binding domain
BOMEOGOA_01223	7.11e-133	-	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Ham1 family
BOMEOGOA_01225	5.17e-08	-	-	-	S	-	-	-	Protein of unknown function (DUF3923)
BOMEOGOA_01226	0.0	uvrA2	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	excinuclease ABC, A subunit
BOMEOGOA_01227	6.99e-125	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BOMEOGOA_01228	1.39e-50	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
BOMEOGOA_01229	1.22e-44	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
BOMEOGOA_01232	1.3e-80	-	-	-	S	-	-	-	Bacterial toxin of type II toxin-antitoxin system, YafQ
BOMEOGOA_01233	2.73e-60	-	-	-	D	ko:K19159	-	ko00000,ko02048	Antitoxin component of a toxin-antitoxin (TA) module
BOMEOGOA_01234	6.34e-193	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_01235	1.55e-21	-	-	-	-	-	-	-	-
BOMEOGOA_01236	5.79e-107	-	-	-	S	-	-	-	Domain of unknown function (DUF5067)
BOMEOGOA_01237	4.45e-83	-	-	-	-	-	-	-	-
BOMEOGOA_01239	8.83e-153	yjhB	3.6.1.13	-	F	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	NUDIX domain
BOMEOGOA_01240	1.51e-185	-	-	-	F	-	-	-	Phosphorylase superfamily
BOMEOGOA_01241	1.57e-97	codA	-	-	F	-	-	-	Cytidine and deoxycytidylate deaminase zinc-binding region
BOMEOGOA_01244	6.41e-106	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BOMEOGOA_01245	2.08e-59	-	-	-	-	-	-	-	-
BOMEOGOA_01246	1.24e-171	-	-	-	-	-	-	-	-
BOMEOGOA_01247	1.64e-264	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
BOMEOGOA_01248	7.88e-131	-	-	-	-	-	-	-	-
BOMEOGOA_01249	1.54e-141	-	-	-	S	-	-	-	Fic/DOC family
BOMEOGOA_01250	4.35e-88	-	-	-	-	-	-	-	-
BOMEOGOA_01251	1.12e-116	-	-	-	-	-	-	-	-
BOMEOGOA_01252	2.68e-53	-	-	-	S	ko:K08987	-	ko00000	Protein of unknown function (DUF1304)
BOMEOGOA_01253	1.18e-126	-	-	-	S	ko:K11621	ko02020,map02020	ko00000,ko00001	Putative adhesin
BOMEOGOA_01254	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
BOMEOGOA_01255	0.0	-	-	-	P	ko:K06148	-	ko00000,ko02000	ABC transporter
BOMEOGOA_01256	4.01e-80	-	-	-	-	-	-	-	-
BOMEOGOA_01257	4.31e-40	-	-	-	D	ko:K04095	-	ko00000,ko03036	Fic/DOC family
BOMEOGOA_01258	3.36e-46	-	-	-	-	-	-	-	-
BOMEOGOA_01259	0.0	pepT	3.4.11.4	-	E	ko:K01258	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
BOMEOGOA_01260	3.31e-299	mepA	-	-	V	ko:K18908	-	ko00000,ko00002,ko01504,ko02000	MATE efflux family protein
BOMEOGOA_01261	4.11e-294	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
BOMEOGOA_01262	8.01e-113	-	-	-	S	-	-	-	ECF-type riboflavin transporter, S component
BOMEOGOA_01263	1.51e-195	pdxK	2.7.1.35	-	H	ko:K00868	ko00750,ko01100,map00750,map01100	ko00000,ko00001,ko01000	Phosphomethylpyrimidine kinase
BOMEOGOA_01264	1.3e-265	-	-	-	V	-	-	-	Beta-lactamase
BOMEOGOA_01265	1.46e-145	maa3	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
BOMEOGOA_01266	1.91e-144	-	-	-	I	-	-	-	Acid phosphatase homologues
BOMEOGOA_01267	2.35e-106	-	-	-	C	-	-	-	Flavodoxin
BOMEOGOA_01268	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
BOMEOGOA_01269	7.96e-27	ktrB	-	-	P	ko:K03498	-	ko00000,ko02000	Potassium uptake protein
BOMEOGOA_01270	2.57e-313	ynbB	-	-	P	-	-	-	aluminum resistance
BOMEOGOA_01271	0.0	speA	4.1.1.17, 4.1.1.18, 4.1.1.19	-	E	ko:K01581,ko:K01582,ko:K01585	ko00310,ko00330,ko00480,ko00960,ko01100,ko01110,ko01130,map00310,map00330,map00480,map00960,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Orn/Lys/Arg decarboxylase, C-terminal domain
BOMEOGOA_01272	2.37e-226	-	-	-	E	-	-	-	Amino acid permease
BOMEOGOA_01273	1.36e-58	-	-	-	C	-	-	-	Pyridoxamine 5'-phosphate oxidase
BOMEOGOA_01274	9.88e-39	-	-	-	C	-	-	-	Pyridoxamine 5'-phosphate oxidase
BOMEOGOA_01275	2.08e-84	crcB	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BOMEOGOA_01276	2.93e-85	crcB1	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BOMEOGOA_01277	3.4e-122	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01278	1.08e-139	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01279	2.61e-195	-	-	-	L	-	-	-	Phage integrase, N-terminal SAM-like domain
BOMEOGOA_01281	1.37e-82	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_01282	4.46e-226	lacX	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Aldose 1-epimerase
BOMEOGOA_01283	3.83e-312	hslU	-	-	O	ko:K03667	-	ko00000,ko03110	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BOMEOGOA_01284	5.68e-117	hslV	3.4.25.2	-	O	ko:K01419	-	ko00000,ko01000,ko01002	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BOMEOGOA_01285	9.64e-218	xerC	-	-	D	ko:K03733,ko:K04763	-	ko00000,ko03036	Phage integrase, N-terminal SAM-like domain
BOMEOGOA_01286	0.0	trmFO	2.1.1.74	-	J	ko:K04094	-	ko00000,ko01000,ko03016,ko03036	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
BOMEOGOA_01287	0.0	topA	5.99.1.2	-	L	ko:K03168	-	ko00000,ko01000,ko03032,ko03400	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BOMEOGOA_01288	8.1e-200	dprA	-	-	LU	ko:K04096	-	ko00000	DNA protecting protein DprA
BOMEOGOA_01289	0.0	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_01290	3e-172	rnhB	3.1.26.4	-	L	ko:K03470	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BOMEOGOA_01291	6.7e-204	rbgA	-	-	S	ko:K14540	-	ko00000,ko03009	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BOMEOGOA_01292	1.46e-44	nhaP4	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
BOMEOGOA_01293	6.37e-289	nhaP4	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
BOMEOGOA_01294	9.85e-49	yozE	-	-	S	-	-	-	Belongs to the UPF0346 family
BOMEOGOA_01295	2.03e-191	degV3	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
BOMEOGOA_01296	9.98e-150	hlyIII	-	-	S	ko:K11068	-	ko00000,ko02042	protein, hemolysin III
BOMEOGOA_01297	4.4e-288	cca	2.7.7.72	-	J	ko:K00974	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
BOMEOGOA_01298	8.78e-206	XK27_10395	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BOMEOGOA_01299	3.15e-296	XK27_05225	-	-	S	-	-	-	Tetratricopeptide repeat protein
BOMEOGOA_01300	8.21e-57	hup	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
BOMEOGOA_01301	1.28e-312	der	-	-	S	ko:K03977	-	ko00000,ko03009	GTPase that plays an essential role in the late steps of ribosome biogenesis
BOMEOGOA_01302	6.6e-276	rpsA	-	-	J	ko:K02945	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein S1
BOMEOGOA_01303	1.81e-149	cmk	2.7.4.25	-	F	ko:K00945	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the cytidylate kinase family. Type 1 subfamily
BOMEOGOA_01304	8.41e-57	-	-	-	M	-	-	-	Lysin motif
BOMEOGOA_01305	1.31e-149	ribU	-	-	U	-	-	-	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
BOMEOGOA_01306	3.66e-165	rluB	5.4.99.22	-	J	ko:K06178	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
BOMEOGOA_01307	1.16e-134	scpB	-	-	D	ko:K06024	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BOMEOGOA_01308	2.03e-166	scpA	-	-	D	ko:K05896	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BOMEOGOA_01309	1.62e-80	ribT	-	-	K	ko:K02859	-	ko00000	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
BOMEOGOA_01310	1.48e-216	xerD	-	-	D	ko:K04763	-	ko00000,ko03036	recombinase XerD
BOMEOGOA_01311	4.41e-216	yitL	-	-	S	ko:K00243	-	ko00000	S1 domain
BOMEOGOA_01312	0.0	pyk	2.7.1.40	-	G	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the pyruvate kinase family
BOMEOGOA_01313	6.65e-234	pfkA	2.7.1.11	-	F	ko:K00850	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230	ko00000,ko00001,ko00002,ko01000,ko01009,ko03019	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
BOMEOGOA_01314	0.0	dnaE	2.7.7.7	-	L	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase
BOMEOGOA_01315	9.47e-43	-	-	-	S	-	-	-	Protein of unknown function (DUF2929)
BOMEOGOA_01316	0.0	yfkN	3.1.3.6, 3.1.4.16	-	F	ko:K01119	ko00230,ko00240,map00230,map00240	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
BOMEOGOA_01317	3.62e-38	rpmF	-	-	J	ko:K02911	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bL32 family
BOMEOGOA_01318	6.62e-48	-	-	-	S	-	-	-	Lipopolysaccharide assembly protein A domain
BOMEOGOA_01319	4.3e-186	-	-	-	S	ko:K07124	-	ko00000	Belongs to the short-chain dehydrogenases reductases (SDR) family
BOMEOGOA_01320	2.48e-225	rnz	3.1.26.11	-	J	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
BOMEOGOA_01321	0.0	oatA	-	-	I	-	-	-	Acyltransferase
BOMEOGOA_01322	1.55e-308	obg	-	-	S	ko:K03979	-	ko00000,ko01000,ko03009	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BOMEOGOA_01323	0.0	uvrC	-	-	L	ko:K03703	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
BOMEOGOA_01324	8.26e-77	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01325	7.22e-41	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01326	5.28e-110	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01329	2.07e-56	-	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	CobQ CobB MinD ParA nucleotide binding domain protein
BOMEOGOA_01330	1.67e-09	-	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	VirC1 protein
BOMEOGOA_01334	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01338	8.16e-16	-	2.7.7.73, 2.7.7.80	-	H	ko:K03148,ko:K21029	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000	ThiF family
BOMEOGOA_01339	9.92e-207	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01340	2.44e-40	-	-	-	V	-	-	-	ABC transporter transmembrane region
BOMEOGOA_01341	2.07e-163	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
BOMEOGOA_01342	1.47e-17	-	-	-	V	-	-	-	ABC transporter transmembrane region
BOMEOGOA_01343	1.05e-76	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01344	6.77e-98	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01345	2.78e-69	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01346	5.19e-100	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01347	4.99e-132	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01348	2.36e-56	-	-	-	-	-	-	-	-
BOMEOGOA_01349	1.88e-250	-	-	-	O	-	-	-	Heat shock 70 kDa protein
BOMEOGOA_01350	1.12e-25	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
BOMEOGOA_01351	3.53e-83	-	-	-	EGP	ko:K08152	-	ko00000,ko02000	Major Facilitator Superfamily
BOMEOGOA_01352	3.39e-47	-	-	-	EGP	ko:K08152	-	ko00000,ko02000	Major Facilitator Superfamily
BOMEOGOA_01353	4.23e-96	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_01354	3.18e-153	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_01357	3.27e-88	-	-	-	S	ko:K18231,ko:K19349	ko02010,map02010	br01600,ko00000,ko00001,ko01504,ko02000	ABC transporter
BOMEOGOA_01358	2.93e-252	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
BOMEOGOA_01359	1.12e-233	-	-	-	P	ko:K06148	-	ko00000,ko02000	ABC transporter
BOMEOGOA_01360	1.03e-13	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01361	7.65e-308	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01362	2.26e-70	yngC	-	-	S	-	-	-	SNARE associated Golgi protein
BOMEOGOA_01363	0.0	yhdG	-	-	E	ko:K03294	-	ko00000	Amino Acid
BOMEOGOA_01364	1.35e-54	gyaR	1.1.1.215, 1.1.1.26, 1.1.1.79, 1.1.1.81	-	CH	ko:K00015,ko:K00090	ko00030,ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00030,map00260,map00620,map00630,map01100,map01110,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOMEOGOA_01365	5.4e-99	gyaR	1.1.1.26, 1.1.1.399, 1.1.1.95	-	CH	ko:K00015,ko:K00058	ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOMEOGOA_01366	9.09e-20	gyaR	1.1.1.215, 1.1.1.26, 1.1.1.79, 1.1.1.81	-	CH	ko:K00015,ko:K00090	ko00030,ko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00030,map00260,map00620,map00630,map01100,map01110,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BOMEOGOA_01367	6.74e-57	yxeH	-	-	S	-	-	-	hydrolase
BOMEOGOA_01368	1e-106	yxeH	-	-	S	-	-	-	hydrolase
BOMEOGOA_01369	8.16e-140	-	-	-	S	-	-	-	reductase
BOMEOGOA_01370	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01371	1.51e-278	coaBC	4.1.1.36, 6.3.2.5	-	H	ko:K01598,ko:K13038	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BOMEOGOA_01372	1.51e-281	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
BOMEOGOA_01373	0.0	aspS	6.1.1.12	-	J	ko:K01876	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
BOMEOGOA_01374	3.01e-312	hisS	6.1.1.21	-	J	ko:K01892	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	histidyl-tRNA synthetase
BOMEOGOA_01375	7.07e-97	dtd	-	-	J	ko:K07560	-	ko00000,ko01000,ko03016	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
BOMEOGOA_01376	0.0	relA	2.7.6.5	-	KT	ko:K00951	ko00230,map00230	ko00000,ko00001,ko01000	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BOMEOGOA_01377	3.12e-79	-	-	-	-	-	-	-	-
BOMEOGOA_01378	2.47e-222	prmA	-	-	J	ko:K02687	-	ko00000,ko01000,ko03009	Ribosomal protein L11 methyltransferase
BOMEOGOA_01379	3.74e-115	ybaK	-	-	S	ko:K03976	-	ko00000,ko01000,ko03016	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BOMEOGOA_01380	1.89e-217	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_01381	1.04e-125	-	-	-	S	ko:K06910	-	ko00000	Phosphatidylethanolamine-binding protein
BOMEOGOA_01382	9.28e-317	-	-	-	S	-	-	-	Putative threonine/serine exporter
BOMEOGOA_01383	5.89e-231	citR	-	-	K	-	-	-	Putative sugar-binding domain
BOMEOGOA_01384	1.13e-67	-	-	-	-	-	-	-	-
BOMEOGOA_01385	3.15e-22	-	-	-	-	-	-	-	-
BOMEOGOA_01386	6.67e-86	-	-	-	S	-	-	-	Domain of unknown function DUF1828
BOMEOGOA_01387	2.56e-123	-	-	-	S	ko:K16924	-	ko00000,ko00002,ko02000	UPF0397 protein
BOMEOGOA_01388	1.09e-185	ykoD	-	-	P	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_01389	3.24e-125	ykoD	-	-	P	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_01390	6.94e-164	cbiQ	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	cobalt transport
BOMEOGOA_01391	1.01e-24	-	-	-	-	-	-	-	-
BOMEOGOA_01392	2.81e-90	ytwI	-	-	S	-	-	-	Protein of unknown function (DUF441)
BOMEOGOA_01393	4.65e-135	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01394	4.42e-12	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01395	3.55e-67	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01396	1.83e-191	-	-	-	-	-	-	-	-
BOMEOGOA_01397	0.0	citF	2.8.3.10	-	H	ko:K01643	ko02020,map02020	ko00000,ko00001,ko01000	Citrate (pro-3S)-lyase alpha chain
BOMEOGOA_01398	2.18e-215	citE	4.1.3.34	-	G	ko:K01644	ko02020,map02020	ko00000,ko00001,ko01000	Belongs to the HpcH HpaI aldolase family
BOMEOGOA_01399	2.27e-59	citD	-	-	C	ko:K01646	ko02020,map02020	ko00000,ko00001	Covalent carrier of the coenzyme of citrate lyase
BOMEOGOA_01400	4.99e-251	citC	6.2.1.22	-	H	ko:K01910	ko02020,map02020	ko00000,ko00001,ko01000	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
BOMEOGOA_01401	4.36e-199	-	-	-	I	-	-	-	Alpha/beta hydrolase family
BOMEOGOA_01402	0.0	citP	-	-	P	ko:K03319	-	ko00000	Sodium:sulfate symporter transmembrane region
BOMEOGOA_01403	0.0	pepC4	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
BOMEOGOA_01404	2.11e-86	-	-	-	-	-	-	-	-
BOMEOGOA_01405	4.37e-86	-	-	-	M	-	-	-	Rib/alpha-like repeat
BOMEOGOA_01406	1.47e-215	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
BOMEOGOA_01408	4.22e-44	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
BOMEOGOA_01409	5.56e-11	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
BOMEOGOA_01410	6.17e-19	-	-	-	S	-	-	-	YSIRK type signal peptide
BOMEOGOA_01411	5.62e-189	-	-	-	S	-	-	-	YSIRK type signal peptide
BOMEOGOA_01412	4.72e-16	-	-	-	M	-	-	-	domain protein
BOMEOGOA_01414	8.11e-65	-	-	-	M	-	-	-	domain protein
BOMEOGOA_01416	0.0	frdA	1.3.5.4	-	C	ko:K00244	ko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020	ko00000,ko00001,ko00002,ko01000	FAD binding domain
BOMEOGOA_01417	0.0	fumC	4.2.1.2	-	C	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	ko00000,ko00001,ko00002,ko01000	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
BOMEOGOA_01418	4.08e-47	-	-	-	-	-	-	-	-
BOMEOGOA_01419	1.25e-77	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
BOMEOGOA_01420	2.07e-13	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
BOMEOGOA_01421	1.53e-59	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
BOMEOGOA_01422	9.83e-195	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01424	1.01e-33	-	-	-	S	-	-	-	Tetratricopeptide repeat
BOMEOGOA_01426	2.92e-25	-	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	PFAM Bacterial extracellular solute-binding proteins, family 5 Middle
BOMEOGOA_01427	2.17e-142	-	-	-	S	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
BOMEOGOA_01428	7e-112	XK27_06945	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
BOMEOGOA_01429	1.48e-133	XK27_06950	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
BOMEOGOA_01430	1.92e-127	pinR1	-	-	L	-	-	-	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed
BOMEOGOA_01431	8.66e-180	cylA	-	-	V	ko:K11050	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	AAA domain, putative AbiEii toxin, Type IV TA system
BOMEOGOA_01432	2.53e-143	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_01433	2.58e-113	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_01434	1.56e-153	-	-	-	-	-	-	-	-
BOMEOGOA_01435	1.2e-43	-	-	-	S	-	-	-	Bacteriocin helveticin-J
BOMEOGOA_01439	1.7e-206	-	5.2.1.8	-	M	ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
BOMEOGOA_01440	0.0	prtB	3.4.21.96	-	O	ko:K01361	-	ko00000,ko01000,ko01002,ko03110	Belongs to the peptidase S8 family
BOMEOGOA_01441	0.0	-	-	-	L	-	-	-	Transposase
BOMEOGOA_01442	1.31e-290	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01443	5.29e-95	pulA	3.2.1.41	CBM48,GH13	G	ko:K01200	ko00500,ko01100,ko01110,map00500,map01100,map01110	ko00000,ko00001,ko01000	belongs to the glycosyl hydrolase 13 family
BOMEOGOA_01444	1.07e-193	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01445	1.35e-05	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
BOMEOGOA_01446	1.7e-131	metI	-	-	P	ko:K02072	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BOMEOGOA_01447	2.63e-243	metN	-	-	P	ko:K02071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BOMEOGOA_01448	7.87e-209	metQ	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
BOMEOGOA_01449	0.0	aha1	-	-	P	ko:K12952	-	ko00000,ko01000	E1-E2 ATPase
BOMEOGOA_01450	2.95e-21	ps301	-	-	K	-	-	-	sequence-specific DNA binding
BOMEOGOA_01451	1.64e-124	folA	1.5.1.3	-	H	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BOMEOGOA_01452	5.75e-243	thyA	2.1.1.45	-	F	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BOMEOGOA_01453	0.0	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
BOMEOGOA_01454	1.37e-83	-	-	-	S	-	-	-	PFAM Uncharacterised protein family UPF0150
BOMEOGOA_01456	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01457	8.45e-80	cbh	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
BOMEOGOA_01458	3.98e-103	cbh	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolase, choloylglycine hydrolase family protein
BOMEOGOA_01459	5.34e-128	-	-	-	I	-	-	-	PAP2 superfamily
BOMEOGOA_01460	0.0	-	-	-	L	-	-	-	Transposase
BOMEOGOA_01461	8.7e-117	-	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
BOMEOGOA_01462	1.7e-37	-	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
BOMEOGOA_01463	3.01e-312	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
BOMEOGOA_01464	6.13e-50	-	-	-	S	-	-	-	Domain of unknown function (DUF4767)
BOMEOGOA_01466	2.03e-111	yfhC	-	-	C	-	-	-	nitroreductase
BOMEOGOA_01467	5.95e-14	ypbG	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	ROK family
BOMEOGOA_01468	1.77e-101	ypbG	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	ROK family
BOMEOGOA_01469	0.0	pbg6	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BOMEOGOA_01470	7.02e-24	pts23C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BOMEOGOA_01471	6.76e-126	pts23C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BOMEOGOA_01472	2.86e-307	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_01473	4.27e-76	pts23C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BOMEOGOA_01474	4.62e-251	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_01475	3.55e-173	-	-	-	K	ko:K03492	-	ko00000,ko03000	UTRA
BOMEOGOA_01476	2.06e-10	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BOMEOGOA_01477	1.09e-128	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BOMEOGOA_01478	1.45e-40	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_01479	1.82e-163	-	-	-	F	-	-	-	NUDIX domain
BOMEOGOA_01480	0.0	-	-	-	L	-	-	-	Transposase
BOMEOGOA_01481	0.0	nadC2	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BOMEOGOA_01482	1.97e-140	pncA	-	-	Q	-	-	-	Isochorismatase family
BOMEOGOA_01483	6.74e-237	glcD	1.1.3.15	-	C	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	ko00000,ko00001,ko01000	FAD linked oxidases, C-terminal domain
BOMEOGOA_01484	2.7e-278	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_01485	1.74e-311	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_01486	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01488	4.02e-151	-	-	-	K	ko:K03492	-	ko00000,ko03000	UTRA domain
BOMEOGOA_01489	2.11e-39	pbg4	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BOMEOGOA_01490	5.55e-152	pbg4	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BOMEOGOA_01491	1.86e-102	pbg4	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BOMEOGOA_01492	1.71e-112	ydhF	-	-	S	-	-	-	Aldo keto reductase
BOMEOGOA_01493	1.66e-87	ydhF	-	-	S	-	-	-	Aldo keto reductase
BOMEOGOA_01494	2.49e-228	iunH	3.2.2.1	-	F	ko:K01239	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	inosine-uridine preferring nucleoside hydrolase
BOMEOGOA_01495	3.16e-108	-	-	-	-	-	-	-	-
BOMEOGOA_01496	5.67e-24	-	-	-	C	-	-	-	FMN_bind
BOMEOGOA_01497	0.0	-	-	-	I	-	-	-	Protein of unknown function (DUF2974)
BOMEOGOA_01498	7.4e-137	yjhB	3.6.1.13	-	F	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	NUDIX domain
BOMEOGOA_01499	9.93e-266	pbpX1	-	-	V	-	-	-	Beta-lactamase
BOMEOGOA_01500	6.35e-255	asd	1.2.1.11	-	E	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BOMEOGOA_01501	1.24e-277	aspC	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
BOMEOGOA_01502	1.05e-184	dapB	1.17.1.8	-	E	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
BOMEOGOA_01503	2.29e-225	dapA	4.3.3.7	-	E	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BOMEOGOA_01504	4.87e-282	hipO	3.5.1.47	-	E	ko:K05823	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
BOMEOGOA_01505	2.94e-108	dapH	2.3.1.117, 2.3.1.89	-	E	ko:K00674,ko:K05822	ko00300,ko01100,ko01110,ko01120,ko01230,map00300,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
BOMEOGOA_01506	0.0	lysA	4.1.1.20	-	E	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
BOMEOGOA_01507	0.0	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
BOMEOGOA_01508	1.26e-245	dapF	5.1.1.7	-	E	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BOMEOGOA_01509	5.72e-225	potE	-	-	E	-	-	-	Amino Acid
BOMEOGOA_01510	2.92e-104	potE	-	-	E	-	-	-	Amino Acid
BOMEOGOA_01511	7.88e-137	engB	-	-	D	ko:K03978	-	ko00000,ko03036	Necessary for normal cell division and for the maintenance of normal septation
BOMEOGOA_01512	1.71e-300	clpX	-	-	O	ko:K03544	ko04112,map04112	ko00000,ko00001,ko03110	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BOMEOGOA_01513	1.01e-281	tig	-	-	D	ko:K03545	-	ko00000	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
BOMEOGOA_01514	2.35e-286	tuf	-	-	J	ko:K02358,ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03012,ko03029,ko04147	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BOMEOGOA_01515	3.42e-194	-	-	-	-	-	-	-	-
BOMEOGOA_01516	0.0	rnjB	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BOMEOGOA_01517	1.48e-57	rpsO	-	-	J	ko:K02956	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BOMEOGOA_01518	4.42e-47	rpsT	-	-	J	ko:K02968	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 16S ribosomal RNA
BOMEOGOA_01519	2.46e-224	holA	2.7.7.7	-	L	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III delta subunit
BOMEOGOA_01520	0.0	comEC	-	-	S	ko:K02238	-	ko00000,ko00002,ko02044	Competence protein ComEC
BOMEOGOA_01521	3.44e-130	comEA	-	-	L	ko:K02237	-	ko00000,ko00002,ko02044	Competence protein ComEA
BOMEOGOA_01522	1.94e-245	lon	-	-	T	ko:K07177	ko02024,map02024	ko00000,ko00001,ko01002	Belongs to the peptidase S16 family
BOMEOGOA_01523	6.77e-111	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BOMEOGOA_01524	6.08e-125	rsmD	2.1.1.171	-	L	ko:K08316	-	ko00000,ko01000,ko03009	RNA methyltransferase, RsmD family
BOMEOGOA_01525	3.47e-71	ylbG	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2129)
BOMEOGOA_01526	1.28e-264	ftsW	-	-	D	ko:K03588	ko04112,map04112	ko00000,ko00001,ko02000,ko03036	Belongs to the SEDS family
BOMEOGOA_01527	0.0	typA	-	-	T	ko:K06207	-	ko00000	GTP-binding protein TypA
BOMEOGOA_01528	1.96e-131	def	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
BOMEOGOA_01529	9e-46	ykzG	-	-	S	-	-	-	Belongs to the UPF0356 family
BOMEOGOA_01530	0.0	rnjA	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BOMEOGOA_01531	7.25e-85	ytlR	-	-	I	-	-	-	Diacylglycerol kinase catalytic domain
BOMEOGOA_01532	0.0	recD2	3.1.11.5	-	L	ko:K03581	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
BOMEOGOA_01533	1.56e-145	-	-	-	S	-	-	-	repeat protein
BOMEOGOA_01534	3.18e-161	pgm	-	-	G	-	-	-	Phosphoglycerate mutase family
BOMEOGOA_01535	1.34e-279	mnmA	2.8.1.13	-	J	ko:K00566	ko04122,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
BOMEOGOA_01536	2.01e-74	XK27_04120	-	-	S	-	-	-	Putative amino acid metabolism
BOMEOGOA_01537	1.62e-276	iscS	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
BOMEOGOA_01538	1.69e-162	mtnN	3.2.2.9	-	E	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BOMEOGOA_01539	3.14e-57	-	-	-	-	-	-	-	-
BOMEOGOA_01540	6.29e-135	nudF	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	ADP-ribose pyrophosphatase
BOMEOGOA_01541	1.15e-43	cspA	-	-	K	ko:K03704	-	ko00000,ko03000	'Cold-shock' DNA-binding domain
BOMEOGOA_01542	0.0	ileS	6.1.1.5	-	J	ko:K01870	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BOMEOGOA_01543	8.69e-166	divIVA	-	-	D	ko:K04074	-	ko00000,ko03036	DivIVA domain protein
BOMEOGOA_01544	1.4e-192	ylmH	-	-	S	-	-	-	S4 domain protein
BOMEOGOA_01545	5.07e-62	yggT	-	-	S	ko:K02221	-	ko00000,ko02044	YGGT family
BOMEOGOA_01546	2.88e-96	sepF	-	-	D	ko:K09772	-	ko00000,ko03036	Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
BOMEOGOA_01547	6.3e-267	ftsZ	-	-	D	ko:K03531	ko04112,map04112	ko00000,ko00001,ko02048,ko03036,ko04812	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BOMEOGOA_01548	1.33e-309	ftsA	-	-	D	ko:K03590	ko04112,map04112	ko00000,ko00001,ko03036,ko04812	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
BOMEOGOA_01549	1.28e-193	divIB	-	-	D	ko:K03589	ko04112,map04112	ko00000,ko00001,ko03036	Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
BOMEOGOA_01550	4.23e-268	murG	2.4.1.227	GT28	M	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BOMEOGOA_01551	0.0	murD	6.3.2.9	-	M	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BOMEOGOA_01552	3.96e-227	mraY	2.7.8.13	-	M	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BOMEOGOA_01553	9.32e-42	pbpX	-	-	M	ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
BOMEOGOA_01554	0.0	pbpX	-	-	M	ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
BOMEOGOA_01555	1.88e-71	ftsL	-	-	D	-	-	-	Cell division protein FtsL
BOMEOGOA_01556	1.7e-234	rsmH	2.1.1.199	-	J	ko:K03438	-	ko00000,ko01000,ko03009	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
BOMEOGOA_01557	6.58e-101	mraZ	-	-	K	ko:K03925	-	ko00000	Belongs to the MraZ family
BOMEOGOA_01558	4.46e-72	-	-	-	S	-	-	-	Protein of unknown function (DUF3397)
BOMEOGOA_01559	1.09e-18	-	-	-	S	-	-	-	Protein of unknown function (DUF4044)
BOMEOGOA_01560	3.41e-125	mreD	-	-	-	ko:K03571	-	ko00000,ko03036	-
BOMEOGOA_01561	2.47e-190	mreC	-	-	M	ko:K03570	-	ko00000,ko03036	Involved in formation and maintenance of cell shape
BOMEOGOA_01562	1.22e-227	mreB	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	cell shape determining protein MreB
BOMEOGOA_01563	3.32e-148	radC	-	-	L	ko:K03630	-	ko00000	DNA repair protein
BOMEOGOA_01564	4.5e-164	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
BOMEOGOA_01565	2.76e-306	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
BOMEOGOA_01566	0.0	valS	6.1.1.9	-	J	ko:K01873	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
BOMEOGOA_01567	2.55e-290	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
BOMEOGOA_01568	8.55e-47	-	-	-	-	ko:K19167	-	ko00000,ko02048	-
BOMEOGOA_01569	1.1e-305	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01570	1.13e-219	yfdH	-	GT2	M	ko:K12999,ko:K20534	-	ko00000,ko01000,ko01003,ko01005,ko02000	Glycosyltransferase like family 2
BOMEOGOA_01571	8.41e-88	-	-	-	S	-	-	-	GtrA-like protein
BOMEOGOA_01572	5.72e-44	-	-	-	-	-	-	-	-
BOMEOGOA_01573	3.15e-53	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BOMEOGOA_01574	4.46e-165	rsuA	5.4.99.19	-	J	ko:K06183	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
BOMEOGOA_01575	4.94e-73	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01576	5.52e-36	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
BOMEOGOA_01577	1.9e-190	-	-	-	-	-	-	-	-
BOMEOGOA_01578	3.28e-298	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_01579	8.37e-184	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BOMEOGOA_01580	3.05e-193	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BOMEOGOA_01581	9.06e-125	-	-	-	S	-	-	-	Protein of unknown function (DUF3232)
BOMEOGOA_01582	1.96e-294	thiI	2.8.1.4	-	H	ko:K03151	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BOMEOGOA_01583	5.46e-280	iscS2	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
BOMEOGOA_01584	0.0	ezrA	-	-	D	ko:K06286	-	ko00000,ko03036	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
BOMEOGOA_01585	1.52e-142	rpsD	-	-	J	ko:K02986	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BOMEOGOA_01586	1.51e-105	-	-	-	S	-	-	-	Protein of unknown function (DUF1694)
BOMEOGOA_01587	6.82e-309	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
BOMEOGOA_01588	4.53e-55	-	-	-	-	-	-	-	-
BOMEOGOA_01589	1.34e-103	uspA	-	-	T	-	-	-	universal stress protein
BOMEOGOA_01590	8.71e-278	rodA	-	-	D	ko:K05837	-	ko00000,ko03036	Belongs to the SEDS family
BOMEOGOA_01591	8.85e-47	-	-	-	S	-	-	-	Protein of unknown function (DUF2969)
BOMEOGOA_01592	1.12e-68	ytjA	-	-	S	ko:K08998	-	ko00000	Could be involved in insertion of integral membrane proteins into the membrane
BOMEOGOA_01593	7.12e-229	mbl	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	Cell shape determining protein MreB Mrl
BOMEOGOA_01594	4.22e-41	-	-	-	S	-	-	-	Protein of unknown function (DUF1146)
BOMEOGOA_01595	2.98e-94	atpC	-	-	C	ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane
BOMEOGOA_01596	0.0	atpD	3.6.3.14	-	C	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BOMEOGOA_01597	6.03e-221	atpG	-	-	C	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BOMEOGOA_01598	0.0	atpA	3.6.3.14	-	C	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BOMEOGOA_01599	8.3e-123	atpH	-	-	C	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BOMEOGOA_01600	5.91e-87	atpF	-	-	C	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BOMEOGOA_01601	3.07e-39	atpE	-	-	C	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BOMEOGOA_01602	2.05e-166	atpB	-	-	C	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko03110	it plays a direct role in the translocation of protons across the membrane
BOMEOGOA_01603	5.28e-146	upp	2.4.2.9	-	F	ko:K00761	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BOMEOGOA_01604	6.48e-243	ywlC	2.7.7.87	-	J	ko:K07566	-	ko00000,ko01000,ko03009,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
BOMEOGOA_01605	7.23e-202	prmC	2.1.1.297	-	J	ko:K02493	-	ko00000,ko01000,ko03012	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
BOMEOGOA_01606	5.18e-234	prfA	-	-	J	ko:K02835	-	ko00000,ko03012	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BOMEOGOA_01607	1.21e-146	tdk	2.7.1.21	-	F	ko:K00857	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	thymidine kinase
BOMEOGOA_01608	0.0	murE2	6.3.2.13	-	M	ko:K01928	ko00300,ko00550,map00300,map00550	ko00000,ko00001,ko01000,ko01011	Domain of unknown function (DUF1727)
BOMEOGOA_01611	5.18e-251	ampC	-	-	V	-	-	-	Beta-lactamase
BOMEOGOA_01612	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01613	2.63e-42	-	-	-	EGP	-	-	-	Major Facilitator
BOMEOGOA_01614	8.75e-183	-	-	-	EGP	-	-	-	Major Facilitator
BOMEOGOA_01615	0.0	-	-	-	L	-	-	-	Transposase
BOMEOGOA_01616	0.0	pgi	5.3.1.9	-	G	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the GPI family
BOMEOGOA_01617	7.81e-141	vanZ	-	-	V	-	-	-	VanZ like family
BOMEOGOA_01618	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
BOMEOGOA_01619	2.82e-262	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
BOMEOGOA_01620	0.0	yclK	-	-	T	-	-	-	Histidine kinase
BOMEOGOA_01621	9.37e-169	-	-	-	K	-	-	-	Transcriptional regulatory protein, C terminal
BOMEOGOA_01622	8.14e-80	-	-	-	S	-	-	-	SdpI/YhfL protein family
BOMEOGOA_01623	2.64e-245	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase
BOMEOGOA_01624	1.34e-262	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase, class I
BOMEOGOA_01625	4.07e-47	-	-	-	M	-	-	-	Protein of unknown function (DUF3737)
BOMEOGOA_01626	1.25e-49	-	-	-	M	-	-	-	Protein of unknown function (DUF3737)
BOMEOGOA_01627	9.37e-176	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
BOMEOGOA_01628	5.7e-67	-	-	-	K	-	-	-	Transcriptional
BOMEOGOA_01630	1.23e-47	-	-	-	-	-	-	-	-
BOMEOGOA_01631	5.21e-41	-	-	-	-	-	-	-	-
BOMEOGOA_01633	1.33e-58	-	-	-	-	-	-	-	-
BOMEOGOA_01635	0.0	-	-	-	S	ko:K06919	-	ko00000	Virulence-associated protein E
BOMEOGOA_01638	4.05e-286	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BOMEOGOA_01639	2.53e-240	ytxK	2.1.1.72	-	L	ko:K00571	-	ko00000,ko01000,ko02048	N-6 DNA Methylase
BOMEOGOA_01640	4.9e-105	-	-	-	U	ko:K02248	-	ko00000,ko00002,ko02044	Putative Competence protein ComGF
BOMEOGOA_01641	3.39e-55	-	-	-	-	-	-	-	-
BOMEOGOA_01642	2.04e-95	-	-	-	-	ko:K02246	-	ko00000,ko00002,ko02044	-
BOMEOGOA_01643	3.56e-65	comGC	-	-	U	ko:K02245	-	ko00000,ko00002,ko02044	competence protein ComGC
BOMEOGOA_01644	1.78e-220	comGB	-	-	NU	ko:K02244	-	ko00000,ko00002,ko02044	type II secretion system
BOMEOGOA_01645	9.34e-227	comGA	-	-	NU	ko:K02243	-	ko00000,ko00002,ko02044	Type II IV secretion system protein
BOMEOGOA_01646	3.98e-171	yebC	-	-	K	-	-	-	Transcriptional regulatory protein
BOMEOGOA_01647	4.71e-119	-	-	-	S	-	-	-	VanZ like family
BOMEOGOA_01648	7.4e-283	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01649	7.85e-204	-	-	-	E	-	-	-	Amino acid permease
BOMEOGOA_01650	1.28e-65	-	-	-	E	-	-	-	Amino acid permease
BOMEOGOA_01651	1.77e-237	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
BOMEOGOA_01652	4.51e-152	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BOMEOGOA_01653	9.53e-191	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BOMEOGOA_01654	0.0	pts33BCA	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BOMEOGOA_01655	3.67e-81	bglG5	-	-	K	ko:K03488	-	ko00000,ko03000	CAT RNA binding domain
BOMEOGOA_01656	1.13e-81	bglG5	-	-	K	ko:K03488	-	ko00000,ko03000	CAT RNA binding domain
BOMEOGOA_01657	5.85e-274	glxK	2.7.1.165	-	G	ko:K00865	ko00260,ko00561,ko00630,ko01100,ko01120,ko01130,map00260,map00561,map00630,map01100,map01120,map01130	ko00000,ko00001,ko01000	Belongs to the glycerate kinase type-1 family
BOMEOGOA_01658	2.06e-112	ptpA	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BOMEOGOA_01659	1.86e-153	-	-	-	-	-	-	-	-
BOMEOGOA_01660	8.38e-192	-	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
BOMEOGOA_01661	2.15e-194	-	-	-	S	-	-	-	hydrolase
BOMEOGOA_01662	0.0	glmM	5.4.2.10	-	G	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko01000	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BOMEOGOA_01663	3.33e-221	ybbR	-	-	S	-	-	-	YbbR-like protein
BOMEOGOA_01664	8.69e-194	dacA	2.7.7.85	-	S	ko:K18672	-	ko00000,ko01000	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BOMEOGOA_01665	4.91e-266	potD	-	-	P	ko:K11069	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BOMEOGOA_01666	3.23e-180	potC	-	-	P	ko:K11070	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BOMEOGOA_01667	6.45e-175	potB	-	-	P	ko:K11071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BOMEOGOA_01668	5.94e-262	potA	3.6.3.30, 3.6.3.31	-	P	ko:K02010,ko:K11072	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
BOMEOGOA_01669	1.47e-210	murB	1.3.1.98	-	M	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation
BOMEOGOA_01670	7.47e-128	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
BOMEOGOA_01671	1.87e-118	ydiB	-	-	O	ko:K06925	-	ko00000,ko03016	Hydrolase, P-loop family
BOMEOGOA_01672	1.06e-230	pta	2.3.1.8, 3.6.3.21	-	C	ko:K00625,ko:K02028	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000,ko02000	phosphate acetyltransferase
BOMEOGOA_01673	3.3e-174	ung	3.2.2.27	-	L	ko:K03648	ko03410,ko05340,map03410,map05340	ko00000,ko00001,ko01000,ko03400	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BOMEOGOA_01674	3.57e-204	ycsE	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
BOMEOGOA_01675	3.58e-124	-	-	-	-	-	-	-	-
BOMEOGOA_01676	1.34e-183	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
BOMEOGOA_01677	1.42e-286	pgk	2.7.2.3	-	F	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the phosphoglycerate kinase family
BOMEOGOA_01678	7.02e-245	gap	1.2.1.12	-	G	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
BOMEOGOA_01679	3.32e-241	cggR	-	-	K	ko:K05311	-	ko00000,ko03000	Putative sugar-binding domain
BOMEOGOA_01680	2.16e-91	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01681	2.45e-60	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01682	3.93e-69	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01684	5.5e-32	-	-	-	L	-	-	-	Transposase
BOMEOGOA_01685	5.7e-45	-	-	-	L	-	-	-	Transposase
BOMEOGOA_01686	1.5e-295	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_01687	0.0	-	-	-	L	-	-	-	Transposase
BOMEOGOA_01688	0.0	-	-	-	S	-	-	-	SH3-like domain
BOMEOGOA_01689	1.16e-128	clpP	3.4.21.92	-	O	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
BOMEOGOA_01690	8.23e-219	whiA	-	-	K	ko:K09762	-	ko00000	May be required for sporulation
BOMEOGOA_01691	1.54e-248	yvcK	-	-	S	-	-	-	Required for morphogenesis under gluconeogenic growth conditions
BOMEOGOA_01692	2.09e-211	yvcJ	-	-	S	ko:K06958	-	ko00000,ko03019	Displays ATPase and GTPase activities
BOMEOGOA_01693	2.64e-109	-	-	-	S	-	-	-	Short repeat of unknown function (DUF308)
BOMEOGOA_01694	0.0	uvrA	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
BOMEOGOA_01695	0.0	uvrB	-	-	L	ko:K03702	ko03420,map03420	ko00000,ko00001,ko03400	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
BOMEOGOA_01696	0.0	pgm	5.4.2.2	-	G	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
BOMEOGOA_01697	1.88e-95	glgC	2.7.7.27	-	H	ko:K00975	ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026	ko00000,ko00001,ko00002,ko01000	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BOMEOGOA_01698	4.44e-271	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01699	3.46e-241	gpsA	1.1.1.94	-	I	ko:K00057	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	Glycerol-3-phosphate dehydrogenase
BOMEOGOA_01700	3.32e-202	lgt	-	-	M	ko:K13292	-	ko00000,ko01000	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BOMEOGOA_01701	6.12e-231	hprK	-	-	F	ko:K06023	-	ko00000,ko01000	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BOMEOGOA_01702	4.74e-52	-	-	-	-	-	-	-	-
BOMEOGOA_01703	4.35e-238	prfB	-	-	J	ko:K02836	-	ko00000,ko03012	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BOMEOGOA_01704	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
BOMEOGOA_01705	6.59e-124	hpf	-	-	J	ko:K05808	-	ko00000,ko03009	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BOMEOGOA_01706	1.02e-172	comFC	-	-	S	ko:K02242	-	ko00000,ko00002,ko02044	Competence protein
BOMEOGOA_01707	7.41e-313	comFA	-	-	L	ko:K02240	-	ko00000,ko00002,ko02044	Helicase C-terminal domain protein
BOMEOGOA_01708	2.4e-152	yvyE	3.4.13.9	-	S	ko:K01271	-	ko00000,ko01000,ko01002	YigZ family
BOMEOGOA_01709	3.75e-266	tagO	2.7.8.33, 2.7.8.35	-	M	ko:K02851	-	ko00000,ko01000,ko01003,ko01005	transferase
BOMEOGOA_01710	2.14e-286	rny	-	-	S	ko:K18682	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Endoribonuclease that initiates mRNA decay
BOMEOGOA_01711	1.54e-248	recA	-	-	L	ko:K03553	ko03440,map03440	ko00000,ko00001,ko00002,ko03400	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BOMEOGOA_01712	3e-127	pgsA	2.7.8.5	-	I	ko:K00995	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BOMEOGOA_01713	2.76e-197	ymfM	-	-	S	ko:K15539	-	ko00000	Helix-turn-helix domain
BOMEOGOA_01714	1.39e-171	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl-(Acyl carrier protein) reductase
BOMEOGOA_01715	1.11e-302	ymfH	-	-	S	-	-	-	Peptidase M16
BOMEOGOA_01716	1.72e-290	ymfF	-	-	S	-	-	-	Peptidase M16 inactive domain protein
BOMEOGOA_01717	0.0	ftsK	-	-	D	ko:K03466	-	ko00000,ko03036	Belongs to the FtsK SpoIIIE SftA family
BOMEOGOA_01718	4.46e-90	WQ51_03320	-	-	S	-	-	-	Protein of unknown function (DUF1149)
BOMEOGOA_01719	2.12e-136	cspR	2.1.1.207	-	J	ko:K03216	-	ko00000,ko01000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
BOMEOGOA_01720	5.17e-271	XK27_05220	-	-	S	-	-	-	AI-2E family transporter
BOMEOGOA_01721	8.61e-46	srlB	2.7.1.198	-	G	ko:K02781	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system glucitol/sorbitol-specific IIA component
BOMEOGOA_01722	5.54e-31	srlB	2.7.1.198	-	G	ko:K02781	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system glucitol/sorbitol-specific IIA component
BOMEOGOA_01723	0.0	pacL	-	-	P	-	-	-	Cation transporter/ATPase, N-terminus
BOMEOGOA_01724	1.5e-257	pgl	3.1.1.31	-	G	ko:K07404	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Lactonase, 7-bladed beta-propeller
BOMEOGOA_01725	3.63e-152	-	-	-	S	-	-	-	SNARE associated Golgi protein
BOMEOGOA_01726	1.99e-70	mycA	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
BOMEOGOA_01727	1.52e-254	mycA	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
BOMEOGOA_01728	9.96e-38	mycA	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
BOMEOGOA_01729	1.73e-218	rluD2	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
BOMEOGOA_01730	4.35e-198	nadK	2.7.1.23	-	F	ko:K00858	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BOMEOGOA_01731	4.88e-147	yjbM	2.7.6.5	-	S	ko:K07816	ko00230,map00230	ko00000,ko00001,ko01000	RelA SpoT domain protein
BOMEOGOA_01732	7.26e-146	-	-	-	S	-	-	-	CYTH
BOMEOGOA_01733	9.53e-147	yjbH	-	-	Q	-	-	-	Thioredoxin
BOMEOGOA_01734	1.12e-205	coiA	-	-	S	ko:K06198	-	ko00000	Competence protein
BOMEOGOA_01735	3.69e-178	mecA	-	-	NOT	ko:K16511	-	ko00000	Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
BOMEOGOA_01736	1.08e-87	spxA	-	-	K	ko:K16509	-	ko00000	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
BOMEOGOA_01737	0.0	ptsI	2.7.3.9	-	G	ko:K08483	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BOMEOGOA_01738	1.29e-54	ptsH	-	-	G	ko:K11189	-	ko00000,ko02000	phosphocarrier protein HPR
BOMEOGOA_01739	5.25e-37	-	-	-	-	-	-	-	-
BOMEOGOA_01740	2.35e-138	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01741	0.0	clpE	-	-	O	ko:K03697	-	ko00000,ko03110	Belongs to the ClpA ClpB family
BOMEOGOA_01742	2.94e-60	XK27_09445	-	-	S	-	-	-	Domain of unknown function (DUF1827)
BOMEOGOA_01743	0.0	prfC	-	-	J	ko:K02837	-	ko00000,ko03012	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BOMEOGOA_01744	1.46e-206	hlyX	-	-	S	ko:K03699	-	ko00000,ko02042	Transporter associated domain
BOMEOGOA_01745	3.04e-95	-	-	-	-	-	-	-	-
BOMEOGOA_01746	1.05e-112	-	-	-	-	-	-	-	-
BOMEOGOA_01747	4.65e-189	recX	-	-	S	ko:K03565	-	ko00000,ko03400	Regulatory protein RecX
BOMEOGOA_01748	0.0	rumA_1	2.1.1.190, 2.1.1.35	-	J	ko:K00557,ko:K03215	-	ko00000,ko01000,ko03009,ko03016	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BOMEOGOA_01749	4.08e-61	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
BOMEOGOA_01750	7.79e-69	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
BOMEOGOA_01751	1.81e-28	-	-	-	-	-	-	-	-
BOMEOGOA_01753	7.41e-49	-	-	-	-	-	-	-	-
BOMEOGOA_01754	5.88e-25	-	-	-	S	ko:K06919	-	ko00000	DNA primase
BOMEOGOA_01755	4.62e-251	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_01756	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_01759	4.96e-144	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01760	5.68e-23	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
BOMEOGOA_01761	2.18e-210	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01762	1.9e-61	-	-	-	-	-	-	-	-
BOMEOGOA_01763	1.33e-276	mvaS	2.3.3.10	-	I	ko:K01641	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Hydroxymethylglutaryl-CoA synthase
BOMEOGOA_01764	3.27e-276	mvaA	1.1.1.88, 2.3.1.9	-	C	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the HMG-CoA reductase family
BOMEOGOA_01765	2.04e-275	atoB	1.1.1.88, 2.3.1.9	-	I	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the thiolase family
BOMEOGOA_01766	6.04e-278	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01767	8.54e-215	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
BOMEOGOA_01768	2.77e-199	rbn	-	-	S	ko:K07058	-	ko00000	Belongs to the UPF0761 family
BOMEOGOA_01769	1.72e-211	map	3.4.11.18	-	E	ko:K01265	-	ko00000,ko01000,ko01002	Methionine Aminopeptidase
BOMEOGOA_01770	3.48e-103	ykuP	-	-	C	ko:K03839	-	ko00000	Flavodoxin
BOMEOGOA_01771	2.9e-117	gtcA1	-	-	S	-	-	-	Teichoic acid glycosylation protein
BOMEOGOA_01772	3.82e-277	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
BOMEOGOA_01773	5.82e-35	-	-	-	-	-	-	-	-
BOMEOGOA_01775	8.09e-315	chbC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BOMEOGOA_01776	8.18e-269	yfmL	-	-	L	-	-	-	DEAD DEAH box helicase
BOMEOGOA_01777	2.31e-166	lys	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
BOMEOGOA_01779	1.71e-179	-	-	-	E	ko:K03294	-	ko00000	amino acid
BOMEOGOA_01780	2.35e-138	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
BOMEOGOA_01781	9.18e-317	yhdP	-	-	S	-	-	-	Transporter associated domain
BOMEOGOA_01782	1.38e-37	-	-	-	C	-	-	-	nitroreductase
BOMEOGOA_01783	3.62e-24	-	-	-	C	-	-	-	nitroreductase
BOMEOGOA_01784	1.49e-54	-	-	-	-	-	-	-	-
BOMEOGOA_01785	3.95e-113	ptbA	2.7.1.208	-	G	ko:K02755,ko:K02777,ko:K20107,ko:K20108	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	ko00000,ko00001,ko00002,ko01000,ko02000	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
BOMEOGOA_01786	2.07e-52	-	-	-	-	-	-	-	-
BOMEOGOA_01787	6.41e-10	-	-	-	-	-	-	-	-
BOMEOGOA_01788	4.86e-30	glvR	-	-	K	ko:K03481	-	ko00000,ko03000	Helix-turn-helix domain, rpiR family
BOMEOGOA_01789	3.38e-101	glvR	-	-	K	ko:K03481	-	ko00000,ko03000	Helix-turn-helix domain, rpiR family
BOMEOGOA_01790	4e-149	glvC	2.7.1.208	-	G	ko:K02749,ko:K02750	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
BOMEOGOA_01791	2.01e-68	glvC	2.7.1.208	-	G	ko:K02749,ko:K02750	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
BOMEOGOA_01792	3.44e-162	glvC	2.7.1.208	-	G	ko:K02749,ko:K02750	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
BOMEOGOA_01793	6.03e-50	-	-	-	S	-	-	-	hydrolase
BOMEOGOA_01794	3.46e-22	-	-	-	S	-	-	-	hydrolase
BOMEOGOA_01795	3.89e-207	-	-	-	S	-	-	-	Phospholipase, patatin family
BOMEOGOA_01796	3.03e-315	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_01797	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
BOMEOGOA_01798	1.22e-171	-	-	-	K	ko:K22103	-	ko00000,ko03000	DeoR C terminal sensor domain
BOMEOGOA_01799	1.27e-83	-	-	-	S	-	-	-	Enterocin A Immunity
BOMEOGOA_01800	5.27e-74	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
BOMEOGOA_01801	0.0	sufB	-	-	O	ko:K07033,ko:K09014	-	ko00000	assembly protein SufB
BOMEOGOA_01802	1.29e-105	nifU	-	-	C	ko:K04488	-	ko00000	SUF system FeS assembly protein, NifU family
BOMEOGOA_01803	4.69e-301	sufS	2.8.1.7, 4.4.1.16	-	E	ko:K11717	ko00450,ko01100,map00450,map01100	ko00000,ko00001,ko01000	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BOMEOGOA_01804	1.21e-305	sufD	-	-	O	ko:K07033,ko:K09015	-	ko00000	FeS assembly protein SufD
BOMEOGOA_01805	3.69e-187	sufC	-	-	O	ko:K09013	-	ko00000,ko02000	FeS assembly ATPase SufC
BOMEOGOA_01806	1.4e-64	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01807	6.14e-77	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01808	3.06e-199	-	3.1.3.102, 3.1.3.104	-	S	ko:K20861	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
BOMEOGOA_01809	3.76e-67	-	2.3.1.81	-	V	ko:K00662	-	ko00000,ko01000,ko01504	Aminoglycoside 3-N-acetyltransferase
BOMEOGOA_01810	2.24e-260	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01812	4.61e-96	gntR	-	-	K	-	-	-	UbiC transcription regulator-associated domain protein
BOMEOGOA_01813	2.69e-27	gntR	-	-	K	-	-	-	UbiC transcription regulator-associated domain protein
BOMEOGOA_01814	3.01e-224	rihC	3.2.2.1	-	F	ko:K01239,ko:K01250,ko:K12700	ko00230,ko00760,ko01100,map00230,map00760,map01100	ko00000,ko00001,ko01000	Nucleoside
BOMEOGOA_01815	0.0	kup	-	-	P	ko:K03549	-	ko00000,ko02000	Transport of potassium into the cell
BOMEOGOA_01816	6.62e-164	rpiA	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BOMEOGOA_01817	1.47e-215	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BOMEOGOA_01818	2.54e-209	-	-	-	C	-	-	-	Domain of unknown function (DUF4931)
BOMEOGOA_01819	0.0	-	-	-	-	-	-	-	-
BOMEOGOA_01820	1.18e-55	XK27_08630	-	-	T	ko:K07166	-	ko00000	Belongs to the UPF0237 family
BOMEOGOA_01821	4.18e-315	XK27_08635	-	-	S	ko:K09157	-	ko00000	UPF0210 protein
BOMEOGOA_01822	3.82e-313	srrA1	-	-	G	ko:K02027,ko:K17244	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
BOMEOGOA_01823	4.94e-305	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_01824	4.21e-80	-	-	-	S	-	-	-	Protein of unknown function (DUF2974)
BOMEOGOA_01825	5.58e-215	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01826	2.31e-26	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01827	3.4e-82	-	-	-	S	-	-	-	Protein of unknown function (DUF2974)
BOMEOGOA_01828	2.57e-141	glnP	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BOMEOGOA_01829	1.09e-140	glnM	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BOMEOGOA_01830	5.69e-195	glnH	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
BOMEOGOA_01831	4.83e-174	glnQ	-	-	E	ko:K10041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_01832	4.72e-45	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01833	9.94e-39	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01834	2.4e-170	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01835	6.82e-79	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01836	1.35e-149	udk	2.7.1.48	-	F	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Zeta toxin
BOMEOGOA_01837	4.63e-200	-	-	-	EGP	-	-	-	Major facilitator superfamily
BOMEOGOA_01838	1.04e-130	ykoE	-	-	S	ko:K16925	-	ko00000,ko00002,ko02000	ABC-type cobalt transport system, permease component
BOMEOGOA_01839	0.0	XK27_09605	-	-	V	ko:K18892	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter transmembrane region
BOMEOGOA_01840	0.0	XK27_09600	-	-	V	ko:K06147,ko:K18891	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_01841	3.72e-202	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01842	2.03e-14	XK27_09600	-	-	V	ko:K06147,ko:K18891	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_01843	7.56e-106	-	-	-	K	-	-	-	Transcriptional regulator, MarR family
BOMEOGOA_01844	1.5e-190	peb1A	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BOMEOGOA_01845	6.43e-167	-	-	-	F	-	-	-	glutamine amidotransferase
BOMEOGOA_01846	9.1e-192	-	-	-	-	-	-	-	-
BOMEOGOA_01847	0.0	ykpA	-	-	S	-	-	-	ABC transporter, ATP-binding protein
BOMEOGOA_01848	3.57e-192	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_01849	3.3e-212	pepA	-	-	E	-	-	-	M42 glutamyl aminopeptidase
BOMEOGOA_01850	5.65e-276	pmrA	-	-	EGP	ko:K08161	-	ko00000,ko02000	MFS_1 like family
BOMEOGOA_01851	0.0	qacA	-	-	EGP	-	-	-	Major Facilitator
BOMEOGOA_01852	1.14e-117	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
BOMEOGOA_01853	1.6e-305	pyrP	-	-	F	ko:K02824	-	ko00000,ko02000	Permease
BOMEOGOA_01854	1.81e-40	-	-	-	-	-	-	-	-
BOMEOGOA_01855	4.98e-82	qacA	-	-	EGP	-	-	-	Major Facilitator
BOMEOGOA_01860	4.24e-124	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BOMEOGOA_01863	6.22e-43	cspA	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock protein
BOMEOGOA_01864	8.89e-136	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair
BOMEOGOA_01865	0.0	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_01866	0.0	rumA_2	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BOMEOGOA_01867	1.9e-312	nhaC	-	-	C	ko:K03315	-	ko00000,ko02000	Na H antiporter NhaC
BOMEOGOA_01868	3.63e-37	-	-	-	-	-	-	-	-
BOMEOGOA_01869	7.31e-154	ybhL	-	-	S	ko:K06890	-	ko00000	Belongs to the BI1 family
BOMEOGOA_01870	0.0	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_01871	5.53e-147	ybbB	-	-	S	-	-	-	Protein of unknown function (DUF1211)
BOMEOGOA_01872	4.59e-218	dagK	2.7.1.107	-	G	ko:K07029	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko01000	Lipid kinase
BOMEOGOA_01873	0.0	gatB	6.3.5.6, 6.3.5.7	-	J	ko:K02434	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BOMEOGOA_01874	0.0	gatA	6.3.5.6, 6.3.5.7	-	J	ko:K02433	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
BOMEOGOA_01875	2.94e-66	gatC	6.3.5.6, 6.3.5.7	-	J	ko:K02435	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BOMEOGOA_01876	7.94e-271	camS	-	-	S	-	-	-	sex pheromone
BOMEOGOA_01877	0.0	ligA	6.5.1.2	-	L	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	ko00000,ko00001,ko01000,ko03032,ko03400	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BOMEOGOA_01878	0.0	pcrA	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase
BOMEOGOA_01879	1.19e-145	acmA	3.2.1.17, 3.2.1.96	-	NU	ko:K01185,ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	mannosyl-glycoprotein
BOMEOGOA_01881	2.31e-114	ydcK	-	-	S	ko:K03095	-	ko00000	Belongs to the SprT family
BOMEOGOA_01882	3.44e-176	-	-	-	M	-	-	-	Glycosyltransferase sugar-binding region containing DXD motif
BOMEOGOA_01883	0.0	epsU	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
BOMEOGOA_01884	1.09e-288	-	-	-	M	-	-	-	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
BOMEOGOA_01885	4.34e-207	pacL	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
BOMEOGOA_01886	2.04e-141	pacL	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
BOMEOGOA_01887	5.11e-90	pacL	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
BOMEOGOA_01888	1.11e-68	pacL	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
BOMEOGOA_01889	2.86e-307	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_01890	8.09e-197	nadE	6.3.1.5	-	F	ko:K01916	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
BOMEOGOA_01891	0.0	pncB	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BOMEOGOA_01892	1.2e-264	-	-	-	M	-	-	-	Glycosyl transferases group 1
BOMEOGOA_01893	2.05e-173	tagA	2.4.1.187	GT26	F	ko:K05946	ko05111,map05111	ko00000,ko00001,ko01000,ko01003	Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid
BOMEOGOA_01894	1.08e-224	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_01895	4.14e-81	tagD	2.7.7.39	-	IM	ko:K00980	ko00564,map00564	ko00000,ko00001,ko01000	Glycerol-3-phosphate cytidylyltransferase
BOMEOGOA_01896	4.41e-158	gntR1	-	-	K	ko:K03710	-	ko00000,ko03000	UTRA
BOMEOGOA_01897	3.4e-255	-	-	-	-	-	-	-	-
BOMEOGOA_01900	4.97e-120	-	-	-	-	-	-	-	-
BOMEOGOA_01901	4.31e-18	slpX	-	-	S	-	-	-	SLAP domain
BOMEOGOA_01902	6.36e-140	pfoSR	-	-	S	ko:K07035	-	ko00000	Phosphotransferase system, EIIC
BOMEOGOA_01903	4.12e-24	pfoSR	-	-	S	ko:K07035	-	ko00000	Phosphotransferase system, EIIC
BOMEOGOA_01904	1.74e-311	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_01905	1.56e-277	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_01906	1.5e-147	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
BOMEOGOA_01907	6e-16	xre	-	-	K	-	-	-	sequence-specific DNA binding
BOMEOGOA_01908	6.14e-21	-	-	-	-	-	-	-	-
BOMEOGOA_01910	4.59e-30	-	-	-	-	-	-	-	-
BOMEOGOA_01913	2.98e-45	-	-	-	-	-	-	-	-
BOMEOGOA_01917	4.62e-136	-	-	-	L	-	-	-	Transposase and inactivated derivatives IS30 family
BOMEOGOA_01918	1.28e-76	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_01919	1.02e-172	glpQ1	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
BOMEOGOA_01920	5.62e-294	-	-	-	G	-	-	-	Antibiotic biosynthesis monooxygenase
BOMEOGOA_01921	2.19e-141	-	-	-	G	-	-	-	Phosphoglycerate mutase family
BOMEOGOA_01922	6.81e-250	-	-	-	D	-	-	-	nuclear chromosome segregation
BOMEOGOA_01923	7.18e-128	-	-	-	M	-	-	-	LysM domain protein
BOMEOGOA_01924	5.26e-19	-	-	-	-	-	-	-	-
BOMEOGOA_01925	4e-32	pphA	3.1.3.16	-	T	ko:K07313	-	ko00000,ko01000	Calcineurin-like phosphoesterase
BOMEOGOA_01926	1.56e-121	pphA	3.1.3.16	-	T	ko:K07313	-	ko00000,ko01000	Calcineurin-like phosphoesterase
BOMEOGOA_01927	4.63e-88	-	-	-	-	-	-	-	-
BOMEOGOA_01928	1.52e-43	-	-	-	-	-	-	-	-
BOMEOGOA_01929	2.03e-92	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
BOMEOGOA_01930	8.06e-298	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_01931	3.47e-291	nagA	3.5.1.25	-	G	ko:K01443	ko00520,ko01130,map00520,map01130	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BOMEOGOA_01932	5.87e-166	-	-	-	K	ko:K03710	-	ko00000,ko03000	UTRA
BOMEOGOA_01935	0.0	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_01936	1.07e-137	-	-	-	L	-	-	-	Resolvase, N terminal domain
BOMEOGOA_01937	1.76e-31	-	-	-	S	-	-	-	PD-(D/E)XK nuclease family transposase
BOMEOGOA_01938	2.4e-180	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2263)
BOMEOGOA_01939	3.9e-79	-	-	-	-	-	-	-	-
BOMEOGOA_01940	2.57e-20	-	-	-	L	ko:K03724	-	ko00000,ko01000,ko03400	DEAD DEAH box helicase
BOMEOGOA_01941	7.08e-265	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
BOMEOGOA_01942	3.62e-36	pckA	4.1.1.49	-	H	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Phosphoenolpyruvate carboxykinase
BOMEOGOA_01943	8.47e-129	pckA	4.1.1.49	-	H	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Phosphoenolpyruvate carboxykinase
BOMEOGOA_01944	2.52e-114	pckA	4.1.1.49	-	H	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Phosphoenolpyruvate carboxykinase
BOMEOGOA_01945	1.68e-84	apfA	3.6.1.61	-	F	ko:K18445	ko00230,map00230	ko00000,ko00001,ko01000	Nudix hydrolase
BOMEOGOA_01946	2.25e-49	-	-	-	-	-	-	-	-
BOMEOGOA_01947	5.45e-141	-	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Carboxymuconolactone decarboxylase family
BOMEOGOA_01948	7.83e-284	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BOMEOGOA_01949	5.47e-46	-	-	-	S	-	-	-	LPXTG cell wall anchor motif
BOMEOGOA_01950	5.87e-114	-	-	-	M	-	-	-	LPXTG-motif cell wall anchor domain protein
BOMEOGOA_01951	1.15e-96	-	-	-	-	-	-	-	-
BOMEOGOA_01952	8.44e-136	-	-	-	E	-	-	-	amino acid
BOMEOGOA_01953	1.42e-62	-	-	-	-	-	-	-	-
BOMEOGOA_01954	0.0	glmS	2.6.1.16	-	M	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	ko00000,ko00001,ko01000,ko01002	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
BOMEOGOA_01955	0.0	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
BOMEOGOA_01956	6.69e-301	cycA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
BOMEOGOA_01957	1.12e-59	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
BOMEOGOA_01958	6.26e-14	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	transferase hexapeptide repeat
BOMEOGOA_01959	4.13e-190	-	-	-	K	-	-	-	Transcriptional regulator
BOMEOGOA_01960	1.12e-82	-	-	-	S	-	-	-	Domain of unknown function (DUF956)
BOMEOGOA_01961	1.49e-223	manN	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	system, mannose fructose sorbose family IID component
BOMEOGOA_01962	2.56e-181	manY	-	-	G	ko:K02746,ko:K02795	ko00051,ko00052,ko00520,ko01100,ko02060,map00051,map00052,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system
BOMEOGOA_01963	4.54e-240	manL	2.7.1.191	-	G	ko:K02793,ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
BOMEOGOA_01964	9.26e-79	melA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
BOMEOGOA_01965	6.88e-147	melA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
BOMEOGOA_01966	4.07e-48	melA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
BOMEOGOA_01967	7.52e-66	-	-	-	G	-	-	-	phosphoenolpyruvate-dependent sugar phosphotransferase system
BOMEOGOA_01968	8.61e-36	sacA	3.2.1.26	GH32	G	ko:K01193	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	invertase
BOMEOGOA_01969	4.72e-204	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
BOMEOGOA_01971	1.76e-109	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
BOMEOGOA_01972	4.33e-103	-	-	-	-	-	-	-	-
BOMEOGOA_01973	0.0	serS	6.1.1.11	-	J	ko:K01875	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BOMEOGOA_01974	1.18e-127	yjcK	2.3.1.128	-	J	ko:K03790	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
BOMEOGOA_01975	3.46e-143	-	-	-	S	-	-	-	SNARE associated Golgi protein
BOMEOGOA_01976	7.24e-199	-	-	-	I	-	-	-	alpha/beta hydrolase fold
BOMEOGOA_01977	1e-09	plcR	-	-	K	ko:K20480	ko02024,map02024	ko00000,ko00001,ko03000	Helix-turn-helix
BOMEOGOA_01978	1.68e-163	plcR	-	-	K	ko:K20480	ko02024,map02024	ko00000,ko00001,ko03000	Helix-turn-helix
BOMEOGOA_01979	0.0	gabD	1.2.1.16, 1.2.1.20, 1.2.1.79	-	C	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Belongs to the aldehyde dehydrogenase family
BOMEOGOA_01980	3.02e-217	-	-	-	-	-	-	-	-
BOMEOGOA_01981	0.0	ydgH	-	-	S	ko:K06994	-	ko00000	MMPL family
BOMEOGOA_01982	8.2e-127	yobS	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BOMEOGOA_01983	1.97e-208	-	3.5.2.6	-	V	ko:K17836	ko00311,ko01130,ko01501,map00311,map01130,map01501	ko00000,ko00001,ko00002,ko01000,ko01504	Beta-lactamase enzyme family
BOMEOGOA_01984	2.02e-216	corA	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
BOMEOGOA_01985	1.28e-311	-	-	-	G	ko:K02027	-	ko00000,ko00002,ko02000	Bacterial extracellular solute-binding protein
BOMEOGOA_01986	0.0	-	-	-	S	-	-	-	Zn-dependent metallo-hydrolase RNA specificity domain
BOMEOGOA_01987	6.84e-188	-	-	-	P	ko:K02026	-	ko00000,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BOMEOGOA_01988	1.4e-203	-	-	-	P	ko:K02025	-	ko00000,ko00002,ko02000	ABC-type sugar transport systems, permease components
BOMEOGOA_01989	9.41e-257	malK	-	-	P	ko:K10112,ko:K17240	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ATPases associated with a variety of cellular activities
BOMEOGOA_01990	0.0	pepD1	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
BOMEOGOA_01991	2.53e-204	endA	-	-	F	ko:K15051	-	ko00000	DNA RNA non-specific endonuclease
BOMEOGOA_01992	2.33e-212	-	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	EXOIII
BOMEOGOA_01993	1.31e-205	-	-	-	K	-	-	-	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BOMEOGOA_01994	1.58e-283	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_01995	4.67e-56	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
BOMEOGOA_01996	5.84e-16	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
BOMEOGOA_01997	2.82e-182	pnuC	-	-	H	ko:K03811	-	ko00000,ko02000	nicotinamide mononucleotide transporter
BOMEOGOA_01998	3e-19	-	-	-	-	-	-	-	-
BOMEOGOA_01999	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
BOMEOGOA_02000	2.05e-229	pepR	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
BOMEOGOA_02001	2.95e-239	add	3.5.4.2, 3.5.4.4	-	F	ko:K01488,ko:K02029,ko:K21053	ko00230,ko01100,ko05340,map00230,map01100,map05340	ko00000,ko00001,ko00002,ko01000,ko02000	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
BOMEOGOA_02002	2.65e-123	-	-	-	F	-	-	-	Nucleoside 2-deoxyribosyltransferase
BOMEOGOA_02004	1.81e-88	-	-	-	S	-	-	-	Peptidase propeptide and YPEB domain
BOMEOGOA_02005	9.4e-314	-	-	-	G	ko:K02027	-	ko00000,ko00002,ko02000	Bacterial extracellular solute-binding protein
BOMEOGOA_02006	5.59e-134	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BOMEOGOA_02007	4.75e-220	coaA	2.7.1.33	-	F	ko:K00867	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Pantothenic acid kinase
BOMEOGOA_02008	5.84e-134	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase
BOMEOGOA_02009	0.0	helD	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	DNA helicase
BOMEOGOA_02010	5.55e-59	XK27_08875	-	-	O	-	-	-	PFAM peptidase M10A and M12B, matrixin and adamalysin
BOMEOGOA_02011	1.51e-90	XK27_08875	-	-	O	-	-	-	PFAM peptidase M10A and M12B, matrixin and adamalysin
BOMEOGOA_02012	4.36e-162	gpm2	-	-	G	-	-	-	Phosphoglycerate mutase family
BOMEOGOA_02013	0.0	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	FtsX-like permease family
BOMEOGOA_02014	1.23e-173	cysA	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_02015	5.59e-310	-	-	-	S	-	-	-	response to antibiotic
BOMEOGOA_02016	5.27e-162	-	-	-	-	-	-	-	-
BOMEOGOA_02017	3.94e-179	-	-	-	L	-	-	-	Transposase
BOMEOGOA_02018	7.24e-22	-	-	-	-	-	-	-	-
BOMEOGOA_02019	2.34e-241	ansA	3.5.1.1	-	EJ	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110	ko00000,ko00001,ko01000	L-asparaginase, type I
BOMEOGOA_02020	3.29e-52	-	-	-	-	-	-	-	-
BOMEOGOA_02021	2.12e-85	-	-	-	-	-	-	-	-
BOMEOGOA_02022	4.29e-124	-	-	-	-	-	-	-	-
BOMEOGOA_02023	2.08e-86	-	-	-	K	ko:K06977	-	ko00000	acetyltransferase
BOMEOGOA_02024	5.79e-138	-	-	-	V	-	-	-	Beta-lactamase
BOMEOGOA_02025	1.65e-208	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
BOMEOGOA_02026	0.0	speA	4.1.1.17, 4.1.1.18, 4.1.1.19	-	E	ko:K01581,ko:K01582,ko:K01585	ko00310,ko00330,ko00480,ko00960,ko01100,ko01110,ko01130,map00310,map00330,map00480,map00960,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Orn/Lys/Arg decarboxylase, C-terminal domain
BOMEOGOA_02027	0.0	-	-	-	E	-	-	-	Amino acid permease
BOMEOGOA_02028	6.38e-08	-	-	-	-	-	-	-	-
BOMEOGOA_02029	2.7e-278	-	-	-	L	-	-	-	COG3547 Transposase and inactivated derivatives
BOMEOGOA_02030	4.79e-35	-	-	-	-	-	-	-	-
BOMEOGOA_02032	2.02e-47	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02033	3.33e-286	-	-	-	G	ko:K02445	-	ko00000,ko02000	Major Facilitator Superfamily
BOMEOGOA_02034	0.0	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02036	3.22e-245	rfbD	1.1.1.133	-	M	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
BOMEOGOA_02037	1.93e-149	rfbC	5.1.3.13	-	M	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
BOMEOGOA_02038	1.08e-210	rfbA	2.7.7.24	-	H	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BOMEOGOA_02039	5.72e-268	rfbB	4.2.1.46	-	M	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
BOMEOGOA_02040	2.94e-282	-	-	-	KQ	-	-	-	helix_turn_helix, mercury resistance
BOMEOGOA_02041	9.73e-85	-	-	-	-	-	-	-	-
BOMEOGOA_02043	3.64e-17	bglH	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BOMEOGOA_02044	5.99e-143	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
BOMEOGOA_02045	7.09e-15	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
BOMEOGOA_02046	3.32e-277	-	-	-	S	ko:K03328	-	ko00000	Membrane protein involved in the export of O-antigen and teichoic acid
BOMEOGOA_02048	9.75e-66	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_02049	5.89e-75	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_02050	1.82e-81	-	-	-	M	-	-	-	Glycosyltransferase like family 2
BOMEOGOA_02052	5.8e-34	-	2.3.1.79	-	S	ko:K00661	-	ko00000,ko01000	Hexapeptide repeat of succinyl-transferase
BOMEOGOA_02054	1.08e-15	-	-	-	M	-	-	-	Glycosyltransferase like family 2
BOMEOGOA_02055	1.67e-134	-	-	GT4	M	ko:K19424	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
BOMEOGOA_02056	1.2e-42	cps4F	-	-	M	-	-	-	Glycosyl transferases group 1
BOMEOGOA_02057	3.24e-13	-	-	GT4	M	ko:K19424	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
BOMEOGOA_02058	1.06e-135	-	-	-	M	-	-	-	Glycosyl transferase 4-like domain
BOMEOGOA_02059	1.07e-154	epsE2	-	-	M	-	-	-	Bacterial sugar transferase
BOMEOGOA_02060	1.57e-184	ywqE	3.1.3.48	-	GM	ko:K01104	-	ko00000,ko01000	PHP domain protein
BOMEOGOA_02061	1.61e-252	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_02062	9.45e-37	-	-	-	G	-	-	-	Protein of unknown function (DUF563)
BOMEOGOA_02063	4.62e-251	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_02065	2.83e-67	-	-	-	M	-	-	-	Glycosyltransferase like family 2
BOMEOGOA_02066	2.49e-19	epsE2	-	-	M	-	-	-	Bacterial sugar transferase
BOMEOGOA_02067	4.68e-186	ywqE	3.1.3.48	-	GM	ko:K01104	-	ko00000,ko01000	PHP domain protein
BOMEOGOA_02068	2.46e-161	ywqD	-	-	D	-	-	-	Capsular exopolysaccharide family
BOMEOGOA_02069	6.68e-187	epsB	-	-	M	-	-	-	biosynthesis protein
BOMEOGOA_02070	8.72e-237	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
BOMEOGOA_02071	1.06e-281	hflX	-	-	S	ko:K03665	-	ko00000,ko03009	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BOMEOGOA_02072	1.48e-166	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02075	2.35e-197	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC/P60 family
BOMEOGOA_02076	1.3e-159	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC P60 family protein
BOMEOGOA_02077	5.65e-73	-	-	-	S	ko:K06921	-	ko00000	Archaea bacterial proteins of unknown function
BOMEOGOA_02078	3.84e-37	-	-	-	S	ko:K06921	-	ko00000	Archaea bacterial proteins of unknown function
BOMEOGOA_02079	1.6e-116	-	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC/P60 family
BOMEOGOA_02080	2.68e-123	gmk2	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Guanylate kinase homologues.
BOMEOGOA_02081	1.07e-49	-	-	-	-	-	-	-	-
BOMEOGOA_02082	0.0	-	-	-	S	-	-	-	O-antigen ligase like membrane protein
BOMEOGOA_02083	1.36e-134	-	-	-	-	-	-	-	-
BOMEOGOA_02084	9.34e-37	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02085	4.91e-62	-	-	-	-	-	-	-	-
BOMEOGOA_02086	3.7e-99	-	-	-	-	-	-	-	-
BOMEOGOA_02087	8.27e-280	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_02088	1.27e-109	-	-	-	S	-	-	-	Threonine/Serine exporter, ThrE
BOMEOGOA_02089	5.87e-180	-	-	-	S	-	-	-	Putative threonine/serine exporter
BOMEOGOA_02090	0.0	-	-	-	S	-	-	-	ABC transporter
BOMEOGOA_02091	5.52e-73	-	-	-	-	-	-	-	-
BOMEOGOA_02092	1.25e-110	rimL	-	-	J	ko:K03817	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
BOMEOGOA_02093	2.71e-160	-	-	-	L	ko:K07496	-	ko00000	Transposase
BOMEOGOA_02094	4.31e-103	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_02095	1.64e-31	-	-	-	S	ko:K07150	-	ko00000	Protein of unknown function (DUF554)
BOMEOGOA_02096	2.27e-288	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
BOMEOGOA_02097	0.0	pepF	-	-	E	ko:K08602	-	ko00000,ko01000,ko01002	oligoendopeptidase F
BOMEOGOA_02098	3.09e-56	-	-	-	D	-	-	-	Filamentation induced by cAMP protein fic
BOMEOGOA_02099	6.92e-304	tcyP	-	-	U	ko:K06956	-	ko00000	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family
BOMEOGOA_02100	2.25e-172	znuB	-	-	U	ko:K02075,ko:K09816	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC 3 transport family
BOMEOGOA_02101	6.65e-152	adcC	-	-	P	ko:K02074,ko:K09817,ko:K11710	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
BOMEOGOA_02102	7.77e-216	-	-	-	P	ko:K02077	-	ko00000,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
BOMEOGOA_02103	2.66e-57	-	-	-	K	ko:K21903	-	ko00000,ko03000	helix_turn_helix, Arsenical Resistance Operon Repressor
BOMEOGOA_02104	0.0	fruA	2.7.1.202	-	GT	ko:K02768,ko:K02769,ko:K02770	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphotransferase System
BOMEOGOA_02105	1.79e-214	pfkB	2.7.1.56	-	H	ko:K00882	ko00051,map00051	ko00000,ko00001,ko01000	Belongs to the carbohydrate kinase PfkB family. LacC subfamily
BOMEOGOA_02106	8.47e-181	fruR	-	-	K	ko:K03436	-	ko00000,ko03000	DeoR C terminal sensor domain
BOMEOGOA_02109	5.7e-36	-	-	-	-	-	-	-	-
BOMEOGOA_02110	8.68e-44	-	-	-	-	-	-	-	-
BOMEOGOA_02111	8.68e-46	-	-	-	K	ko:K07727	-	ko00000,ko03000	Transcriptional regulator
BOMEOGOA_02112	4.94e-71	-	-	-	S	-	-	-	Enterocin A Immunity
BOMEOGOA_02113	3.2e-21	-	-	-	S	-	-	-	Enterocin A Immunity
BOMEOGOA_02114	6.56e-160	-	-	-	S	ko:K06921	-	ko00000	Archaea bacterial proteins of unknown function
BOMEOGOA_02115	1.69e-41	-	-	-	S	ko:K06921	-	ko00000	Archaea bacterial proteins of unknown function
BOMEOGOA_02116	3.86e-186	racD	5.1.1.13	-	M	ko:K01779	ko00250,ko01054,map00250,map01054	ko00000,ko00001,ko01000	Belongs to the aspartate glutamate racemases family
BOMEOGOA_02117	0.0	murE	6.3.2.13, 6.3.2.7	-	M	ko:K01928,ko:K05362	ko00300,ko00550,ko01100,map00300,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BOMEOGOA_02118	5.13e-267	-	-	-	T	-	-	-	His Kinase A (phosphoacceptor) domain
BOMEOGOA_02119	2.9e-157	vanR	-	-	K	-	-	-	response regulator
BOMEOGOA_02120	0.0	ndvA	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
BOMEOGOA_02121	0.0	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_02122	4.62e-179	-	-	-	S	-	-	-	Protein of unknown function (DUF1129)
BOMEOGOA_02123	4.85e-257	ychF	-	-	J	ko:K06942	-	ko00000,ko03009	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
BOMEOGOA_02124	6.38e-59	yyzM	-	-	S	-	-	-	Bacterial protein of unknown function (DUF951)
BOMEOGOA_02125	5.63e-197	spo0J	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
BOMEOGOA_02126	1.43e-177	soj	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	Sporulation initiation inhibitor
BOMEOGOA_02127	7.71e-192	noc	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
BOMEOGOA_02128	9.37e-169	rsmG	2.1.1.170	-	J	ko:K03501	-	ko00000,ko01000,ko03009,ko03036	Specifically methylates the N7 position of a guanine in 16S rRNA
BOMEOGOA_02129	8.99e-116	cvpA	-	-	S	-	-	-	Colicin V production protein
BOMEOGOA_02130	7.75e-232	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
BOMEOGOA_02131	5.49e-193	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
BOMEOGOA_02132	4.46e-127	azr	1.5.1.36	-	S	ko:K22394	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	NADPH-dependent FMN reductase
BOMEOGOA_02133	1.02e-126	azo1	1.5.1.36, 1.7.1.6	-	S	ko:K03206,ko:K19784,ko:K22393	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	NADPH-dependent FMN reductase
BOMEOGOA_02134	2.02e-47	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02135	3.33e-286	-	-	-	G	ko:K02445	-	ko00000,ko02000	Major Facilitator Superfamily
BOMEOGOA_02136	2.05e-283	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02137	4.79e-31	-	-	-	-	-	-	-	-
BOMEOGOA_02138	2.12e-143	-	-	-	K	-	-	-	WHG domain
BOMEOGOA_02139	0.0	-	-	-	L	-	-	-	Probable transposase
BOMEOGOA_02140	4.35e-137	-	-	-	L	-	-	-	Resolvase, N terminal domain
BOMEOGOA_02141	1.16e-51	-	-	-	-	-	-	-	-
BOMEOGOA_02142	0.0	pepD4	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
BOMEOGOA_02143	3.4e-154	lolD	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_02144	7.9e-229	yxeA	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
BOMEOGOA_02145	8.42e-124	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BOMEOGOA_02146	4.23e-145	-	-	-	G	-	-	-	phosphoglycerate mutase
BOMEOGOA_02147	7.18e-183	-	-	-	S	ko:K06889	-	ko00000	Alpha/beta hydrolase family
BOMEOGOA_02148	6.15e-185	XK27_08125	-	-	S	ko:K09861	-	ko00000	Belongs to the UPF0246 family
BOMEOGOA_02149	1.15e-156	-	-	-	-	-	-	-	-
BOMEOGOA_02150	1.74e-11	-	-	-	-	-	-	-	-
BOMEOGOA_02151	4.14e-227	dtpT	-	-	U	ko:K03305	-	ko00000	amino acid peptide transporter
BOMEOGOA_02152	2.69e-44	dtpT	-	-	U	ko:K03305	-	ko00000	amino acid peptide transporter
BOMEOGOA_02153	0.0	pepN	3.4.11.2	-	E	ko:K01256	ko00480,ko01100,map00480,map01100	ko00000,ko00001,ko01000,ko01002	aminopeptidase
BOMEOGOA_02154	4.12e-79	lysM	-	-	M	-	-	-	LysM domain
BOMEOGOA_02155	7.36e-225	-	-	-	-	-	-	-	-
BOMEOGOA_02156	1.03e-285	mdtG2	-	-	EGP	ko:K08161	-	ko00000,ko02000	Transporter, major facilitator family protein
BOMEOGOA_02157	6.02e-261	-	-	-	L	ko:K07496	-	ko00000	Transposase
BOMEOGOA_02159	1.06e-17	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02160	8.76e-217	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02161	0.0	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
BOMEOGOA_02163	0.0	-	-	-	H	-	-	-	ThiF family
BOMEOGOA_02164	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
BOMEOGOA_02165	2.3e-55	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_02166	1.28e-76	-	-	-	L	-	-	-	COG2826 Transposase and inactivated derivatives, IS30 family
BOMEOGOA_02167	0.0	-	-	-	L	-	-	-	Transposase
BOMEOGOA_02168	0.0	nrdE	1.17.4.1	-	F	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BOMEOGOA_02169	1.39e-96	nrdI	-	-	F	ko:K03647	-	ko00000	Probably involved in ribonucleotide reductase function
BOMEOGOA_02170	4.39e-250	nrdF	1.17.4.1	-	F	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BOMEOGOA_02171	7.77e-19	dar	1.1.1.304, 1.1.1.76	-	IQ	ko:K03366	ko00650,map00650	ko00000,ko00001,ko01000	reductase
BOMEOGOA_02172	2.1e-122	cysE	2.3.1.30	-	E	ko:K00640	ko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111	ko00000,ko00001,ko00002,ko01000	Bacterial transferase hexapeptide (six repeats)
BOMEOGOA_02173	7.19e-280	mccB	4.4.1.1, 4.4.1.2, 4.4.1.8	-	E	ko:K01760,ko:K17217	ko00260,ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00260,map00270,map00450,map00920,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	cystathionine
BOMEOGOA_02174	3.63e-218	mccA	2.5.1.134, 2.5.1.47	-	E	ko:K01738,ko:K17216	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the cysteine synthase cystathionine beta- synthase family
BOMEOGOA_02175	5.5e-85	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02176	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02177	1.97e-86	ywdE	-	-	K	ko:K20375	ko02024,map02024	ko00000,ko00001,ko03000	Transcriptional regulator
BOMEOGOA_02178	2.76e-251	-	-	-	EGP	-	-	-	Major facilitator Superfamily
BOMEOGOA_02179	4.13e-26	-	-	-	E	-	-	-	Zn peptidase
BOMEOGOA_02180	1.21e-19	-	-	-	S	-	-	-	Bacteriocin helveticin-J
BOMEOGOA_02181	1.07e-150	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_02183	8.09e-69	-	-	-	-	-	-	-	-
BOMEOGOA_02184	7.53e-118	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
BOMEOGOA_02187	2.63e-285	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02188	2.74e-15	-	-	-	L	-	-	-	Integrase
BOMEOGOA_02189	8.32e-40	-	-	-	L	-	-	-	Integrase
BOMEOGOA_02190	8.65e-119	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	domain protein
BOMEOGOA_02191	2.58e-188	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
BOMEOGOA_02192	9.7e-125	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02193	5.59e-138	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02194	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
BOMEOGOA_02195	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC-type multidrug transport system, ATPase and permease components
BOMEOGOA_02197	3.89e-242	-	2.7.7.73, 2.7.7.80	-	H	ko:K03148,ko:K21029	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000	Involved in molybdopterin and thiamine biosynthesis, family 2
BOMEOGOA_02201	0.0	-	-	-	L	-	-	-	Transposase
BOMEOGOA_02202	1.63e-67	-	-	-	S	ko:K19157	-	ko00000,ko01000,ko02048	Bacterial toxin of type II toxin-antitoxin system, YafQ
BOMEOGOA_02203	8.83e-57	-	-	-	S	ko:K07473	-	ko00000,ko02048	RelB antitoxin
BOMEOGOA_02204	1.68e-15	-	-	-	L	-	-	-	Integrase
BOMEOGOA_02205	2.16e-97	-	-	-	L	-	-	-	Integrase
BOMEOGOA_02206	5.72e-61	-	-	-	-	-	-	-	-
BOMEOGOA_02207	1.46e-110	-	-	-	FG	-	-	-	adenosine 5'-monophosphoramidase activity
BOMEOGOA_02208	4.11e-171	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
BOMEOGOA_02209	2.14e-53	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
BOMEOGOA_02210	0.0	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_02211	0.0	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02212	2.49e-114	luxS	4.4.1.21	-	H	ko:K07173	ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111	ko00000,ko00001,ko00002,ko01000	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
BOMEOGOA_02213	0.0	metE	2.1.1.14	-	E	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BOMEOGOA_02214	9.55e-155	metF	1.5.1.20	-	C	ko:K00297	ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523	ko00000,ko00001,ko00002,ko01000	Methylenetetrahydrofolate reductase
BOMEOGOA_02215	1.08e-268	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_02216	5.79e-86	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
BOMEOGOA_02217	4.46e-85	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
BOMEOGOA_02218	7.67e-234	-	-	-	P	ko:K06901	-	ko00000,ko02000	secondary active sulfate transmembrane transporter activity
BOMEOGOA_02219	1.32e-125	-	2.4.2.7	-	F	ko:K00759	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000,ko04147	Phosphoribosyl transferase domain
BOMEOGOA_02220	7.72e-185	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02221	2.21e-99	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02222	4.63e-119	bioY	-	-	S	ko:K03523	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	BioY family
BOMEOGOA_02223	5.31e-240	birA	6.3.4.15	-	H	ko:K03524	ko00780,ko01100,map00780,map01100	ko00000,ko00001,ko01000,ko03000	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
BOMEOGOA_02224	2.68e-174	fabI	1.3.1.10, 1.3.1.9	-	I	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl- acyl-carrier-protein reductase NADH
BOMEOGOA_02225	2.6e-183	accA	2.1.3.15, 6.4.1.2	-	I	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	alpha subunit
BOMEOGOA_02226	1.78e-202	accD	2.1.3.15, 6.4.1.2	-	I	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BOMEOGOA_02227	0.0	accC	6.3.4.14, 6.4.1.2	-	I	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Acetyl-CoA carboxylase biotin carboxylase subunit
BOMEOGOA_02228	6.93e-96	fabZ2	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	FabA-like domain
BOMEOGOA_02229	2.13e-101	accB	-	-	I	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
BOMEOGOA_02230	2.2e-293	fabF	2.3.1.179	-	I	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
BOMEOGOA_02231	1.09e-164	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	reductase
BOMEOGOA_02232	8.57e-218	fabD	2.3.1.39	-	I	ko:K00645,ko:K15327,ko:K15329	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004,ko01008	Malonyl CoA-acyl carrier protein transacylase
BOMEOGOA_02233	6.25e-47	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BOMEOGOA_02234	3.15e-231	fabH	2.3.1.180	-	I	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BOMEOGOA_02235	1.24e-104	-	-	-	K	-	-	-	Transcriptional regulator
BOMEOGOA_02236	5.77e-102	fabZ	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
BOMEOGOA_02237	4.5e-241	pdp	2.4.2.2	-	F	ko:K00756	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	pyrimidine-nucleoside phosphorylase
BOMEOGOA_02238	4.53e-41	-	-	-	S	-	-	-	Transglycosylase associated protein
BOMEOGOA_02239	1.52e-129	tnpR	-	-	L	-	-	-	Resolvase, N terminal domain
BOMEOGOA_02240	0.000997	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02241	0.0	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
BOMEOGOA_02242	2.42e-73	-	-	-	T	-	-	-	Universal stress protein family
BOMEOGOA_02243	1.68e-59	-	-	-	L	-	-	-	Putative transposase of IS4/5 family (DUF4096)
BOMEOGOA_02244	0.0	traI	5.99.1.2	-	L	ko:K03169	-	ko00000,ko01000,ko03032	This gene contains a nucleotide ambiguity which may be the result of a sequencing error
BOMEOGOA_02245	0.0	traA	-	-	L	-	-	-	MobA MobL family protein
BOMEOGOA_02246	1.15e-35	-	-	-	-	-	-	-	-
BOMEOGOA_02247	1.21e-54	-	-	-	-	-	-	-	-
BOMEOGOA_02248	1.52e-109	-	-	-	-	-	-	-	-
BOMEOGOA_02249	6.94e-59	-	-	-	L	ko:K07473	-	ko00000,ko02048	Addiction module antitoxin, RelB DinJ family
BOMEOGOA_02250	7.33e-70	repA	-	-	S	-	-	-	Replication initiator protein A
BOMEOGOA_02251	6.32e-61	-	-	-	E	-	-	-	Zn peptidase
BOMEOGOA_02252	3.46e-51	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BOMEOGOA_02253	1.48e-56	-	-	-	-	-	-	-	-
BOMEOGOA_02254	1.68e-98	-	-	-	S	-	-	-	Bacteriocin helveticin-J
BOMEOGOA_02255	1.41e-217	-	-	-	S	-	-	-	SLAP domain
BOMEOGOA_02259	5.07e-89	ywdE	-	-	K	ko:K20375	ko02024,map02024	ko00000,ko00001,ko03000	Transcriptional regulator
BOMEOGOA_02260	2e-126	-	-	-	-	-	-	-	-
BOMEOGOA_02261	4.33e-26	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BOMEOGOA_02263	7.25e-93	yokL3	-	-	J	-	-	-	Acetyltransferase (GNAT) domain
BOMEOGOA_02264	1.36e-77	-	-	-	L	-	-	-	Transposase DDE domain
BOMEOGOA_02265	2.81e-85	-	-	-	L	-	-	-	Transposase DDE domain
BOMEOGOA_02270	6.92e-28	repA	-	-	S	-	-	-	Replication initiator protein A (RepA) N-terminus
BOMEOGOA_02271	7.06e-204	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02273	7.88e-109	-	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	CobQ CobB MinD ParA nucleotide binding domain protein
BOMEOGOA_02275	7.19e-37	-	-	-	T	ko:K07171	-	ko00000,ko01000,ko02048	PemK-like, MazF-like toxin of type II toxin-antitoxin system
BOMEOGOA_02276	7.16e-25	-	-	-	L	-	-	-	Transposase
BOMEOGOA_02278	8.57e-15	-	2.7.7.73, 2.7.7.80	-	H	ko:K03148,ko:K21029	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000	ThiF family
BOMEOGOA_02280	4.21e-208	-	-	-	L	-	-	-	An automated process has identified a potential problem with this gene model
BOMEOGOA_02281	7.22e-264	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
BOMEOGOA_02282	5.69e-247	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02283	4.53e-41	-	-	-	S	-	-	-	Transglycosylase associated protein
BOMEOGOA_02284	3.23e-83	-	-	-	L	-	-	-	Resolvase, N terminal domain
BOMEOGOA_02285	1.47e-164	-	-	-	L	ko:K07485	-	ko00000	Transposase
BOMEOGOA_02286	7.32e-93	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02287	7.21e-205	glcU	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
BOMEOGOA_02288	1.06e-284	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02289	5.99e-26	-	-	-	-	-	-	-	-
BOMEOGOA_02290	6.93e-85	-	-	-	L	ko:K07484	-	ko00000	IS66 Orf2 like protein
BOMEOGOA_02291	1.3e-44	-	-	-	S	-	-	-	Transposase C of IS166 homeodomain
BOMEOGOA_02292	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
BOMEOGOA_02293	1e-92	-	-	-	EGP	ko:K08217	-	br01600,ko00000,ko01504,ko02000	Transmembrane secretion effector
BOMEOGOA_02294	0.0	copB	3.6.3.3, 3.6.3.4, 3.6.3.5, 3.6.3.54	-	P	ko:K01533,ko:K01534,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	P-type ATPase
BOMEOGOA_02295	6.37e-23	-	-	-	K	-	-	-	Penicillinase repressor
BOMEOGOA_02296	1.56e-30	-	2.3.1.183	-	M	ko:K03823	ko00440,ko01130,map00440,map01130	ko00000,ko00001,ko01000	acetyltransferase (GNAT) family
BOMEOGOA_02297	6.67e-301	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02298	4.2e-24	-	-	-	NU	-	-	-	Mycoplasma protein of unknown function, DUF285
BOMEOGOA_02299	1.84e-159	-	-	-	S	-	-	-	Domain of unknown function (DUF4430)
BOMEOGOA_02300	5.25e-236	-	-	-	U	-	-	-	FFAT motif binding
BOMEOGOA_02301	0.0	-	-	-	S	ko:K21449	-	ko00000,ko02000	Domain of unknown function (DUF4430)
BOMEOGOA_02302	3.09e-264	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02303	1.55e-38	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02305	5.63e-199	-	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC-type cobalt transport system permease component CbiQ and related transporters
BOMEOGOA_02306	0.0	-	-	-	S	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	AAA domain, putative AbiEii toxin, Type IV TA system
BOMEOGOA_02307	1.01e-161	-	-	-	S	ko:K16927	-	ko00000,ko00002,ko02000	ECF-type riboflavin transporter, S component
BOMEOGOA_02308	1.02e-189	-	-	-	U	-	-	-	FFAT motif binding
BOMEOGOA_02309	3.8e-71	eutP	-	-	E	ko:K04029	-	ko00000	Ethanolamine utilisation - propanediol utilisation
BOMEOGOA_02310	4.22e-41	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02311	1.28e-223	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02312	4.51e-42	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02313	0.0	-	1.8.1.7	-	C	ko:K00383,ko:K21739	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Pyridine nucleotide-disulfide oxidoreductase
BOMEOGOA_02314	6.52e-64	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
BOMEOGOA_02315	1.63e-191	-	-	-	P	ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
BOMEOGOA_02316	1.03e-200	-	-	-	P	ko:K16786	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
BOMEOGOA_02317	1.19e-167	-	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Cobalt transport protein
BOMEOGOA_02318	8.33e-125	-	-	-	T	ko:K16923	-	ko00000,ko00002,ko02000	phosphorelay sensor kinase activity
BOMEOGOA_02319	1.31e-287	oxlT	-	-	P	ko:K08177	-	ko00000,ko02000	Major Facilitator Superfamily
BOMEOGOA_02320	1.46e-64	-	-	-	L	ko:K07483,ko:K07497	-	ko00000	Helix-turn-helix domain
BOMEOGOA_02321	3.83e-227	yvdE	-	-	K	-	-	-	helix_turn _helix lactose operon repressor
BOMEOGOA_02322	4.51e-189	-	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
BOMEOGOA_02323	1.99e-62	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BOMEOGOA_02324	7.72e-136	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BOMEOGOA_02325	2.04e-72	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BOMEOGOA_02326	7.45e-192	thiD	2.7.1.49, 2.7.4.7	-	H	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Phosphomethylpyrimidine kinase
BOMEOGOA_02327	1.57e-170	cobQ	-	-	S	ko:K07009	-	ko00000	glutamine amidotransferase
BOMEOGOA_02328	3.53e-314	-	-	-	L	ko:K07497	-	ko00000	COG2963 Transposase and inactivated derivatives
BOMEOGOA_02329	2.29e-107	-	-	-	M	-	-	-	NlpC/P60 family
BOMEOGOA_02330	2.65e-174	-	-	-	EG	-	-	-	EamA-like transporter family
BOMEOGOA_02331	4.81e-140	-	-	-	-	-	-	-	-
BOMEOGOA_02332	4.7e-103	-	-	-	-	-	-	-	-
BOMEOGOA_02334	2.68e-110	-	-	-	-	-	-	-	-
BOMEOGOA_02335	2.89e-75	-	-	-	-	-	-	-	-
BOMEOGOA_02336	5.02e-313	purB	4.3.2.2	-	F	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BOMEOGOA_02337	0.0	purA	6.3.4.4	-	F	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BOMEOGOA_02338	1.72e-235	guaC	1.7.1.7	-	F	ko:K00364	ko00230,map00230	ko00000,ko00001,ko01000	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
BOMEOGOA_02341	5.24e-258	-	4.2.1.126	-	S	ko:K07106,ko:K09963	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Bacterial protein of unknown function (DUF871)
BOMEOGOA_02342	1.42e-248	asnA	6.3.1.1	-	F	ko:K01914	ko00250,ko00460,ko01100,ko01110,ko01230,map00250,map00460,map01100,map01110,map01230	ko00000,ko00001,ko01000	aspartate--ammonia ligase
BOMEOGOA_02343	6.01e-247	-	-	-	S	-	-	-	YcaO cyclodehydratase, ATP-ad Mg2+-binding
BOMEOGOA_02344	2e-217	-	-	-	S	-	-	-	YcaO cyclodehydratase, ATP-ad Mg2+-binding
BOMEOGOA_02345	8.74e-195	-	-	-	C	-	-	-	Nitroreductase
BOMEOGOA_02347	4.78e-293	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02349	4.65e-168	-	-	-	P	ko:K01990	-	ko00000,ko00002,ko02000	ABC-type multidrug transport system ATPase component
BOMEOGOA_02350	3.93e-292	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02351	3.82e-98	-	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
BOMEOGOA_02352	3.11e-38	-	-	-	-	-	-	-	-
BOMEOGOA_02353	5.78e-305	-	-	-	E	-	-	-	amino acid
BOMEOGOA_02354	9.17e-29	puuD	-	-	S	ko:K07010	-	ko00000,ko01002	peptidase C26
BOMEOGOA_02355	2.2e-118	puuD	-	-	S	ko:K07010	-	ko00000,ko01002	peptidase C26
BOMEOGOA_02356	2.5e-312	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
BOMEOGOA_02357	3.94e-307	aapA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
BOMEOGOA_02358	2.07e-163	-	-	-	-	-	-	-	-
BOMEOGOA_02359	1.77e-155	sipS3	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
BOMEOGOA_02360	0.0	clpE	-	-	O	ko:K03697,ko:K04086	-	ko00000,ko03110	AAA domain (Cdc48 subfamily)
BOMEOGOA_02361	2.11e-220	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
BOMEOGOA_02362	2.48e-276	pts13C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BOMEOGOA_02363	2.53e-28	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_02364	4.81e-81	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_02365	2.79e-126	ylbB	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
BOMEOGOA_02366	2.24e-65	ylbB	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
BOMEOGOA_02367	1.47e-123	ylbB	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
BOMEOGOA_02368	4.81e-50	-	-	-	-	-	-	-	-
BOMEOGOA_02369	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
BOMEOGOA_02370	1.32e-186	lysA2	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
BOMEOGOA_02371	1.63e-32	-	-	-	S	-	-	-	Protein of unknown function (DUF975)
BOMEOGOA_02372	1.47e-107	-	-	-	S	-	-	-	Protein of unknown function (DUF975)
BOMEOGOA_02373	1.12e-65	-	-	-	-	-	-	-	-
BOMEOGOA_02374	5.65e-38	-	-	-	-	-	-	-	-
BOMEOGOA_02375	2.92e-162	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
BOMEOGOA_02378	1.96e-223	pbpX2	-	-	V	-	-	-	Beta-lactamase
BOMEOGOA_02379	9.71e-317	dltD	-	-	M	ko:K03740	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
BOMEOGOA_02380	2.46e-48	dltC	6.1.1.13	-	J	ko:K14188	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
BOMEOGOA_02381	1.12e-308	dltB	-	-	M	ko:K03739	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	MBOAT, membrane-bound O-acyltransferase family
BOMEOGOA_02382	0.0	dltA	6.1.1.13	-	H	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
BOMEOGOA_02383	6.46e-27	-	-	-	S	-	-	-	D-Ala-teichoic acid biosynthesis protein
BOMEOGOA_02384	9.91e-68	-	-	-	-	-	-	-	-
BOMEOGOA_02385	1.89e-276	-	-	-	S	-	-	-	Membrane
BOMEOGOA_02386	4.13e-35	ykuL	-	-	S	-	-	-	IMP dehydrogenase activity
BOMEOGOA_02387	6.83e-230	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_02388	3.88e-38	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
BOMEOGOA_02389	0.0	cadA	-	-	P	-	-	-	P-type ATPase
BOMEOGOA_02390	1.5e-258	napA	-	-	P	-	-	-	Sodium/hydrogen exchanger family
BOMEOGOA_02391	1.5e-64	-	-	-	D	ko:K19159	-	ko00000,ko02048	Antitoxin component of a toxin-antitoxin (TA) module
BOMEOGOA_02392	1.37e-63	yoeB	-	-	S	ko:K19158	-	ko00000,ko01000,ko02048	YoeB-like toxin of bacterial type II toxin-antitoxin system
BOMEOGOA_02393	0.0	-	-	-	V	ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
BOMEOGOA_02394	1.08e-113	-	-	-	S	-	-	-	Putative adhesin
BOMEOGOA_02395	2.01e-203	mutR	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BOMEOGOA_02396	7.34e-56	-	-	-	-	-	-	-	-
BOMEOGOA_02397	2.61e-155	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
BOMEOGOA_02398	3.1e-249	-	-	-	S	-	-	-	DUF218 domain
BOMEOGOA_02399	2.93e-16	-	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_02400	2.83e-224	-	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_02401	1.44e-203	-	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_02402	4.3e-21	-	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BOMEOGOA_02403	1.47e-124	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
BOMEOGOA_02404	7.57e-207	-	-	-	S	-	-	-	Aldo/keto reductase family
BOMEOGOA_02405	4.67e-173	nagB	3.5.99.6	-	G	ko:K02564	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
BOMEOGOA_02406	2.53e-127	-	-	-	K	-	-	-	rpiR family
BOMEOGOA_02407	2.09e-183	-	-	-	S	ko:K09963	-	ko00000	Bacterial protein of unknown function (DUF871)
BOMEOGOA_02408	3.62e-233	ybbE	3.4.16.4	-	V	ko:K21469	ko00550,map00550	ko00000,ko00001,ko01000,ko01002,ko01011	Beta-lactamase
BOMEOGOA_02409	4.39e-159	murQ	4.2.1.126	-	G	ko:K07106	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
BOMEOGOA_02410	0.0	pts32BC	2.7.1.211	-	G	ko:K02808,ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BOMEOGOA_02412	1.34e-151	dak	2.7.1.76	-	F	ko:K10353	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000	deoxynucleoside kinase
BOMEOGOA_02413	5.68e-164	dgk2	2.7.1.76	-	F	ko:K10353	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000	deoxynucleoside kinase
BOMEOGOA_02414	7.76e-190	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
BOMEOGOA_02415	1.23e-294	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
BOMEOGOA_02416	2.14e-220	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
BOMEOGOA_02417	2.97e-254	-	-	-	L	ko:K07496	-	ko00000	transposase, IS605 OrfB family
BOMEOGOA_02418	4.19e-13	-	-	-	S	ko:K07133	-	ko00000	cog cog1373
BOMEOGOA_02419	4.64e-171	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
BOMEOGOA_02420	4.65e-295	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
BOMEOGOA_02421	0.0	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02422	3.86e-128	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02423	4e-131	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02424	3e-308	amt	-	-	P	ko:K03320	-	ko00000,ko02000	ammonium transporter
BOMEOGOA_02425	6.15e-109	-	-	-	S	-	-	-	Uncharacterised protein family (UPF0236)
BOMEOGOA_02426	6.31e-292	pbuG	-	-	S	ko:K06901	-	ko00000,ko02000	permease
BOMEOGOA_02427	4.12e-47	-	-	-	-	-	-	-	-
BOMEOGOA_02428	4.97e-102	atkY	-	-	K	ko:K02171	ko01501,map01501	ko00000,ko00001,ko00002,ko01504,ko03000	Penicillinase repressor
BOMEOGOA_02429	1.71e-83	-	-	-	S	-	-	-	Cupredoxin-like domain
BOMEOGOA_02430	1.81e-64	-	-	-	S	-	-	-	Cupredoxin-like domain
BOMEOGOA_02431	0.0	copA	3.6.3.3, 3.6.3.4, 3.6.3.5, 3.6.3.54	-	P	ko:K01533,ko:K01534,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	P-type ATPase
BOMEOGOA_02432	1.25e-26	-	-	-	EGP	ko:K08368	-	ko00000,ko02000	Sugar (and other) transporter
BOMEOGOA_02433	2.77e-123	-	-	-	EGP	ko:K08368	-	ko00000,ko02000	Sugar (and other) transporter
BOMEOGOA_02434	6.46e-27	-	-	-	-	-	-	-	-
BOMEOGOA_02435	7.04e-271	-	-	-	-	-	-	-	-
BOMEOGOA_02436	0.0	eriC	-	-	P	ko:K03281	-	ko00000	chloride
BOMEOGOA_02437	0.0	gnd	1.1.1.343, 1.1.1.44	-	H	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
BOMEOGOA_02438	0.0	gidA	-	-	D	ko:K03495	-	ko00000,ko03016,ko03036	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
BOMEOGOA_02439	0.0	mnmE	-	-	S	ko:K03650	-	ko00000,ko01000,ko03016	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BOMEOGOA_02440	4.78e-192	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
BOMEOGOA_02441	1.31e-81	rnpA	3.1.26.5	-	J	ko:K03536	-	ko00000,ko01000,ko03016	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
BOMEOGOA_02442	3.26e-23	rpmH	-	-	J	ko:K02914	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL34 family
BOMEOGOA_02443	1.99e-186	repA	-	-	S	-	-	-	Replication initiator protein A
BOMEOGOA_02444	4.71e-161	-	-	-	S	-	-	-	Fic/DOC family
BOMEOGOA_02445	4.93e-54	-	-	-	-	-	-	-	-
BOMEOGOA_02446	1.29e-32	-	-	-	-	-	-	-	-
BOMEOGOA_02447	1.1e-194	-	-	-	L	-	-	-	MobA MobL family protein
BOMEOGOA_02448	2.69e-244	-	-	-	L	-	-	-	MobA MobL family protein
BOMEOGOA_02449	2.38e-66	-	-	-	-	-	-	-	-
BOMEOGOA_02450	5.84e-129	-	-	-	-	-	-	-	-
BOMEOGOA_02451	6.31e-68	-	-	-	S	-	-	-	Cag pathogenicity island, type IV secretory system
BOMEOGOA_02452	1.27e-69	-	-	-	-	-	-	-	-
BOMEOGOA_02453	1.1e-152	-	-	-	-	-	-	-	-
BOMEOGOA_02454	0.0	traE	-	-	U	-	-	-	Psort location Cytoplasmic, score
BOMEOGOA_02455	4.65e-288	-	-	-	S	-	-	-	WXG100 protein secretion system (Wss), protein YukC
BOMEOGOA_02456	5.01e-275	-	-	-	M	-	-	-	CHAP domain
BOMEOGOA_02457	1.65e-122	-	-	-	-	-	-	-	-
BOMEOGOA_02458	2.81e-106	-	-	-	-	-	-	-	-
BOMEOGOA_02459	0.0	traK	-	-	U	ko:K03205	ko03070,map03070	ko00000,ko00001,ko00002,ko02044	TraM recognition site of TraD and TraG
BOMEOGOA_02460	8.02e-84	-	-	-	-	-	-	-	-
BOMEOGOA_02461	1.43e-59	-	-	-	-	-	-	-	-
BOMEOGOA_02462	7.36e-111	-	-	-	-	-	-	-	-
BOMEOGOA_02463	9.57e-87	-	-	-	-	-	-	-	-
BOMEOGOA_02464	0.0	traI	5.99.1.2	-	L	ko:K03169	-	ko00000,ko01000,ko03032	This gene contains a nucleotide ambiguity which may be the result of a sequencing error
BOMEOGOA_02465	9.15e-45	-	-	-	-	-	-	-	-
BOMEOGOA_02466	1.05e-255	-	-	-	L	-	-	-	Psort location Cytoplasmic, score
BOMEOGOA_02467	6.26e-115	rmlA	2.7.7.24	-	H	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BOMEOGOA_02468	8.76e-150	rfbB	4.2.1.46	-	M	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
BOMEOGOA_02470	3.73e-169	yceJ	-	-	EGP	ko:K08221	-	ko00000,ko02000	transporter
BOMEOGOA_02471	2.63e-10	capG	-	-	S	-	-	-	O-acyltransferase activity
BOMEOGOA_02472	2.91e-40	-	-	-	K	-	-	-	HxlR-like helix-turn-helix
BOMEOGOA_02473	6.96e-99	tnpA1	-	-	L	-	-	-	PFAM transposase, IS204 IS1001 IS1096 IS1165 family protein
BOMEOGOA_02476	3.55e-277	B4168_4126	-	-	L	ko:K07493	-	ko00000	Transposase
BOMEOGOA_02477	5.48e-96	-	-	-	S	-	-	-	SIR2-like domain
BOMEOGOA_02478	9.55e-200	-	-	-	S	ko:K06915	-	ko00000	Domain of unknown function DUF87
BOMEOGOA_02479	4.07e-39	-	-	-	-	-	-	-	-
BOMEOGOA_02480	3.14e-182	-	-	-	D	-	-	-	AAA domain
BOMEOGOA_02482	3.06e-74	-	-	-	-	-	-	-	-
BOMEOGOA_02483	1.15e-20	-	-	-	-	-	-	-	-
BOMEOGOA_02484	1.79e-24	-	-	-	-	-	-	-	-