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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	KEGG_ko	KEGG_Pathway	BRITE	Description
BENEMHLD_00001	3.02e-174	icaA	2.4.1.212	GT2	M	ko:K00752,ko:K11936	ko02026,map02026	ko00000,ko00001,ko01000,ko01003,ko02000	Glycosyltransferases, probably involved in cell wall biogenesis
BENEMHLD_00003	3e-127	tnpR1	-	-	L	-	-	-	Resolvase, N terminal domain
BENEMHLD_00004	2.32e-104	-	-	-	L	-	-	-	Phage terminase, small subunit
BENEMHLD_00005	0.0	-	-	-	S	-	-	-	Phage Terminase
BENEMHLD_00007	3.05e-260	-	-	-	S	-	-	-	Phage portal protein
BENEMHLD_00008	0.0	-	-	-	S	ko:K06904	-	ko00000	Phage capsid family
BENEMHLD_00009	9.87e-44	-	-	-	-	-	-	-	-
BENEMHLD_00010	7.27e-73	-	-	-	S	-	-	-	Phage head-tail joining protein
BENEMHLD_00011	1.45e-93	-	-	-	S	-	-	-	Bacteriophage HK97-gp10, putative tail-component
BENEMHLD_00012	1.91e-85	-	-	-	S	-	-	-	Protein of unknown function (DUF806)
BENEMHLD_00013	2.61e-147	-	-	-	S	-	-	-	Phage tail tube protein
BENEMHLD_00014	5.08e-74	-	-	-	S	-	-	-	Phage tail assembly chaperone proteins, TAC
BENEMHLD_00015	5.92e-50	-	-	-	-	-	-	-	-
BENEMHLD_00016	0.0	-	-	-	L	-	-	-	Phage tail tape measure protein TP901
BENEMHLD_00017	0.0	-	-	-	-	-	-	-	-
BENEMHLD_00018	0.0	-	-	-	S	-	-	-	cellulase activity
BENEMHLD_00019	1.99e-69	-	-	-	-	-	-	-	-
BENEMHLD_00021	8.63e-42	-	-	-	-	-	-	-	-
BENEMHLD_00022	2.21e-63	-	-	-	S	-	-	-	Bacteriophage holin of superfamily 6 (Holin_LLH)
BENEMHLD_00023	8.79e-285	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
BENEMHLD_00024	8.69e-92	-	-	-	-	-	-	-	-
BENEMHLD_00026	8.18e-288	sip	-	-	L	-	-	-	Phage integrase family
BENEMHLD_00027	1.96e-224	glyQ	6.1.1.14	-	J	ko:K01878	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	glycyl-tRNA synthetase alpha subunit
BENEMHLD_00028	0.0	glyS	6.1.1.14	-	J	ko:K01879	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Glycyl-tRNA synthetase beta subunit
BENEMHLD_00029	0.0	dnaG	-	-	L	ko:K02316	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
BENEMHLD_00030	1.21e-257	sigA	-	-	K	ko:K03086	-	ko00000,ko03021	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
BENEMHLD_00031	1.1e-165	trmK	2.1.1.217	-	S	ko:K06967	-	ko00000,ko01000,ko03016	SAM-dependent methyltransferase
BENEMHLD_00032	1.63e-190	yqfO	-	-	S	-	-	-	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BENEMHLD_00033	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
BENEMHLD_00034	0.0	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	(ABC) transporter
BENEMHLD_00035	1.8e-36	dmpI	5.3.2.6	-	G	ko:K01821	ko00362,ko00621,ko00622,ko01100,ko01120,ko01220,map00362,map00621,map00622,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Belongs to the 4-oxalocrotonate tautomerase family
BENEMHLD_00036	4.01e-80	yitW	-	-	S	-	-	-	Iron-sulfur cluster assembly protein
BENEMHLD_00037	6.15e-182	-	-	-	-	-	-	-	-
BENEMHLD_00038	3.25e-224	-	-	-	-	-	-	-	-
BENEMHLD_00039	0.0	rsmF	-	-	J	-	-	-	NOL1 NOP2 sun family protein
BENEMHLD_00040	1.81e-250	fni	5.3.3.2	-	C	ko:K01823	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)
BENEMHLD_00041	1.62e-232	mvaD	4.1.1.33	-	I	ko:K01597	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	diphosphomevalonate decarboxylase
BENEMHLD_00042	7.57e-215	mvk	2.7.1.36	-	I	ko:K00869	ko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146	ko00000,ko00001,ko00002,ko01000	mevalonate kinase
BENEMHLD_00043	0.0	rexB	3.6.4.12	-	L	ko:K16899	-	ko00000,ko01000,ko03400	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' - 3' nuclease activity
BENEMHLD_00044	0.0	addA	3.6.4.12	-	L	ko:K16898	-	ko00000,ko01000,ko03400	ATP-dependent helicase nuclease subunit A
BENEMHLD_00045	0.0	dinG	3.6.4.12	-	L	ko:K03722	-	ko00000,ko01000,ko03400	helicase involved in DNA repair and perhaps also replication
BENEMHLD_00046	2.66e-112	ypmB	-	-	S	-	-	-	Protein conserved in bacteria
BENEMHLD_00047	3.43e-281	aspB	2.6.1.1, 2.6.1.14	-	E	ko:K00812,ko:K22457	ko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase
BENEMHLD_00048	0.0	asnS	6.1.1.22	-	J	ko:K01893	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Asparaginyl-tRNA synthetase
BENEMHLD_00049	5.96e-146	dnaD	-	-	L	ko:K02086	-	ko00000	DnaD domain protein
BENEMHLD_00050	2.81e-149	nth	4.2.99.18	-	L	ko:K10773	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BENEMHLD_00051	1.34e-112	comEB	3.5.4.12	-	F	ko:K01493	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko02044	ComE operon protein 2
BENEMHLD_00052	0.0	ponA	2.4.1.129, 3.4.16.4	GT51	M	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein 1A
BENEMHLD_00053	1.03e-156	recU	-	-	L	ko:K03700	-	ko00000,ko03400	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation
BENEMHLD_00054	2.28e-138	ypsA	-	-	S	-	-	-	Belongs to the UPF0398 family
BENEMHLD_00055	5.37e-88	gpsB	-	-	D	-	-	-	Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation
BENEMHLD_00057	8.68e-278	ypsC	-	-	L	ko:K07444	-	ko00000,ko01000	Belongs to the methyltransferase superfamily
BENEMHLD_00058	9.34e-225	serA	1.1.1.399, 1.1.1.95	-	EH	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BENEMHLD_00059	5.13e-46	-	-	-	-	-	-	-	-
BENEMHLD_00060	1e-248	lplA	6.3.1.20	-	H	ko:K03800	ko00785,ko01100,map00785,map01100	ko00000,ko00001,ko01000	Lipoate-protein ligase
BENEMHLD_00061	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
BENEMHLD_00062	9.22e-213	lysR	-	-	K	-	-	-	Transcriptional regulator
BENEMHLD_00063	1.46e-240	nrdF	1.17.4.1	-	F	ko:K00526	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BENEMHLD_00064	0.0	nrdE	1.17.4.1	-	F	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BENEMHLD_00065	1.76e-51	nrdH	-	-	O	ko:K06191	-	ko00000	Glutaredoxin
BENEMHLD_00066	0.0	-	-	-	K	-	-	-	Mga helix-turn-helix domain
BENEMHLD_00067	9.43e-73	-	-	-	-	-	-	-	-
BENEMHLD_00068	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BENEMHLD_00069	1.72e-142	XK27_02070	-	-	S	ko:K07078	-	ko00000	Nitroreductase family
BENEMHLD_00070	5.59e-90	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Ribonuclease HI
BENEMHLD_00071	3.47e-85	-	-	-	S	-	-	-	Family of unknown function (DUF5322)
BENEMHLD_00072	0.0	fhs	6.3.4.3	-	F	ko:K01938	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the formate--tetrahydrofolate ligase family
BENEMHLD_00073	1.4e-106	lspA	3.4.23.36	-	MU	ko:K03101	ko03060,map03060	ko00000,ko00001,ko01000,ko01002	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BENEMHLD_00074	4.27e-223	rluD	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
BENEMHLD_00076	7.77e-118	pyrR	2.4.2.9	-	F	ko:K02825	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000,ko03000	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
BENEMHLD_00077	1.15e-299	pyrP	-	-	F	ko:K02824	-	ko00000,ko02000	Permease
BENEMHLD_00078	5.04e-230	pyrB	2.1.3.2	-	F	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the ATCase OTCase family
BENEMHLD_00079	4.76e-307	pyrC	3.5.2.3	-	F	ko:K01465	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
BENEMHLD_00080	5.32e-267	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthetase glutamine chain
BENEMHLD_00081	0.0	carB	6.3.5.5	-	F	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Carbamoyl-phosphate synthase
BENEMHLD_00082	1.02e-197	pyrD	1.3.1.14, 1.3.98.1	-	F	ko:K00226,ko:K17828	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
BENEMHLD_00083	9.32e-164	pyrF	4.1.1.23	-	F	ko:K01591	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
BENEMHLD_00084	1.9e-145	pyrE	2.4.2.10	-	F	ko:K00762	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BENEMHLD_00085	3.31e-246	pfoS/R	-	-	S	ko:K07035	-	ko00000	Phosphotransferase system, EIIC
BENEMHLD_00086	1.43e-67	-	-	-	S	-	-	-	MazG-like family
BENEMHLD_00087	0.0	FbpA	-	-	K	-	-	-	Fibronectin-binding protein
BENEMHLD_00089	3.08e-207	-	-	-	S	-	-	-	EDD domain protein, DegV family
BENEMHLD_00090	3.8e-130	-	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	Belongs to the Nudix hydrolase family
BENEMHLD_00091	1.3e-265	hisC	2.6.1.9	-	E	ko:K00817	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Cys/Met metabolism PLP-dependent enzyme
BENEMHLD_00092	3.83e-278	hisZ	-	-	E	ko:K02502	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
BENEMHLD_00093	3.99e-141	hisG	2.4.2.17	-	F	ko:K00765,ko:K02502	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity
BENEMHLD_00094	1.44e-293	hisD	1.1.1.23	-	E	ko:K00013	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BENEMHLD_00095	2.09e-136	hisB	4.2.1.19	-	E	ko:K01693	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	imidazoleglycerol-phosphate dehydratase
BENEMHLD_00096	3.44e-146	hisH	-	-	E	ko:K02501	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BENEMHLD_00097	1.05e-174	hisA	5.3.1.16	-	E	ko:K01814	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BENEMHLD_00098	4.44e-173	hisF	-	-	E	ko:K02500	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
BENEMHLD_00099	3.38e-76	hisI	3.5.4.19, 3.6.1.31	-	E	ko:K01496,ko:K11755	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BENEMHLD_00100	5.01e-69	hisE	3.6.1.31	-	E	ko:K01523	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	phosphoribosyl-ATP diphosphatase activity
BENEMHLD_00101	2.01e-266	hisC	2.6.1.9	-	E	ko:K00817	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BENEMHLD_00102	8.74e-193	yisK	3.7.1.5, 4.1.1.68	-	Q	ko:K05921,ko:K16164	ko00350,ko01100,ko01120,ko01220,map00350,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Fumarylacetoacetate (FAA) hydrolase family
BENEMHLD_00103	4.33e-146	-	-	-	C	-	-	-	Nitroreductase family
BENEMHLD_00104	3.63e-95	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_00105	5.19e-90	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_00106	4.2e-284	-	-	-	EGP	ko:K08217	-	br01600,ko00000,ko01504,ko02000	Transmembrane secretion effector
BENEMHLD_00107	2.14e-165	-	-	-	T	-	-	-	Transcriptional regulatory protein, C terminal
BENEMHLD_00108	1.43e-223	-	-	-	T	-	-	-	Histidine kinase-like ATPases
BENEMHLD_00109	5.4e-176	XK27_05695	-	-	V	ko:K02003,ko:K19083	ko02010,ko02020,map02010,map02020	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_00110	0.0	XK27_05700	-	-	V	ko:K02004,ko:K19084	ko02010,ko02020,map02010,map02020	ko00000,ko00001,ko00002,ko02000	FtsX-like permease family
BENEMHLD_00111	7.32e-270	xerS	-	-	L	ko:K04763	-	ko00000,ko03036	Belongs to the 'phage' integrase family
BENEMHLD_00112	3.94e-221	ppaC	3.6.1.1	-	C	ko:K15986	ko00190,map00190	ko00000,ko00001,ko01000	inorganic pyrophosphatase
BENEMHLD_00113	1.15e-235	-	-	-	K	-	-	-	LysR substrate binding domain
BENEMHLD_00114	3.64e-217	pflA	1.97.1.4	-	C	ko:K04069	-	ko00000,ko01000	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BENEMHLD_00115	0.0	pflB	2.3.1.54	-	C	ko:K00656	ko00620,ko00640,ko00650,ko01100,ko01120,map00620,map00640,map00650,map01100,map01120	ko00000,ko00001,ko01000	Pyruvate formate lyase-like
BENEMHLD_00116	0.0	parC	-	-	L	ko:K02621	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
BENEMHLD_00117	0.0	parE	-	-	L	ko:K02622	-	ko00000,ko01000,ko02048,ko03032,ko03036	Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule
BENEMHLD_00118	5.07e-143	plsY	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
BENEMHLD_00119	2.78e-221	lacX	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Aldose 1-epimerase
BENEMHLD_00120	0.0	hslU	-	-	O	ko:K03667	-	ko00000,ko03110	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BENEMHLD_00121	2.06e-119	hslV	3.4.25.2	-	O	ko:K01419	-	ko00000,ko01000,ko01002	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BENEMHLD_00122	1.21e-216	xerC	-	-	D	ko:K03733,ko:K04763	-	ko00000,ko03036	Belongs to the 'phage' integrase family. XerC subfamily
BENEMHLD_00123	0.0	trmFO	2.1.1.74	-	J	ko:K04094	-	ko00000,ko01000,ko03016,ko03036	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
BENEMHLD_00124	0.0	topA	5.99.1.2	-	L	ko:K03168	-	ko00000,ko01000,ko03032,ko03400	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BENEMHLD_00125	2.8e-190	dprA	-	-	LU	ko:K04096	-	ko00000	DNA protecting protein DprA
BENEMHLD_00126	2.13e-180	rnhB	3.1.26.4	-	L	ko:K03470	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BENEMHLD_00127	1.35e-204	rbgA	-	-	S	ko:K14540	-	ko00000,ko03009	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BENEMHLD_00128	2.92e-170	-	-	-	S	-	-	-	Domain of unknown function (DUF4918)
BENEMHLD_00130	2.3e-78	XK27_02555	-	-	-	-	-	-	-
BENEMHLD_00131	0.0	ctpA	3.4.21.102	-	M	ko:K03797	-	ko00000,ko01000,ko01002	Belongs to the peptidase S41A family
BENEMHLD_00132	2.52e-55	yozE	-	-	S	-	-	-	Belongs to the UPF0346 family
BENEMHLD_00133	3.45e-126	msrA	1.8.4.11	-	C	ko:K07304	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BENEMHLD_00134	4.32e-147	ypmS	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2140)
BENEMHLD_00135	3.87e-202	XK27_03630	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase
BENEMHLD_00136	1.18e-191	WQ51_01275	-	-	S	-	-	-	EDD domain protein, DegV family
BENEMHLD_00137	4.5e-149	hlyIII	-	-	S	ko:K11068	-	ko00000,ko02042	protein, hemolysin III
BENEMHLD_00138	1.54e-120	folA	1.5.1.3	-	H	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BENEMHLD_00139	2.17e-246	thyA	2.1.1.45	-	F	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BENEMHLD_00140	0.0	yfmR	-	-	S	ko:K15738	-	ko00000,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_00141	2.08e-110	-	-	-	-	-	-	-	-
BENEMHLD_00142	2.74e-286	cca	2.7.7.72	-	J	ko:K00974	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate
BENEMHLD_00143	2.95e-207	ypjC	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BENEMHLD_00144	1.71e-303	XK27_05225	-	-	S	-	-	-	Tetratricopeptide repeat protein
BENEMHLD_00145	1.6e-54	hup	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
BENEMHLD_00146	3.67e-312	der	-	-	S	ko:K03977	-	ko00000,ko03009	GTPase that plays an essential role in the late steps of ribosome biogenesis
BENEMHLD_00147	6.19e-300	rpsA	-	-	J	ko:K02945	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein S1
BENEMHLD_00148	1.89e-150	cmk	2.7.4.25	-	F	ko:K00945	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the cytidylate kinase family. Type 1 subfamily
BENEMHLD_00149	9.84e-91	-	-	-	M	-	-	-	Lysin motif
BENEMHLD_00150	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
BENEMHLD_00151	5.09e-238	-	-	-	S	-	-	-	Helix-turn-helix domain
BENEMHLD_00152	4.03e-61	fer	-	-	C	ko:K05337	-	ko00000	4Fe-4S single cluster domain of Ferredoxin I
BENEMHLD_00153	4.54e-125	ribU	-	-	U	-	-	-	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
BENEMHLD_00154	3.03e-178	rluB	5.4.99.22	-	J	ko:K06178	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
BENEMHLD_00155	3.83e-135	scpB	-	-	D	ko:K06024	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BENEMHLD_00156	8.93e-163	scpA	-	-	D	ko:K05896	-	ko00000,ko03036	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BENEMHLD_00157	2.81e-88	ribT	-	-	K	ko:K02859	-	ko00000	COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
BENEMHLD_00158	2.09e-212	xerD	-	-	D	ko:K04763	-	ko00000,ko03036	recombinase XerD
BENEMHLD_00159	1.08e-210	yitL	-	-	S	ko:K00243	-	ko00000	S1 domain
BENEMHLD_00160	6.13e-95	ytwI	-	-	S	-	-	-	Protein of unknown function (DUF441)
BENEMHLD_00161	0.0	pyk	2.7.1.40	-	G	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the pyruvate kinase family
BENEMHLD_00162	9e-227	pfkA	2.7.1.11	-	F	ko:K00850	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230	ko00000,ko00001,ko00002,ko01000,ko01009,ko03019	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
BENEMHLD_00163	0.0	dnaE	2.7.7.7	-	L	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase
BENEMHLD_00164	2.06e-38	-	-	-	S	-	-	-	Protein of unknown function (DUF2929)
BENEMHLD_00165	4.53e-189	-	-	-	-	-	-	-	-
BENEMHLD_00166	0.0	ycjM	3.1.3.5, 3.1.3.6, 3.1.4.16	-	F	ko:K01119,ko:K08693	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	5'-nucleotidase, C-terminal domain
BENEMHLD_00167	3.37e-123	-	-	-	K	-	-	-	Domain of unknown function (DUF1836)
BENEMHLD_00168	1.35e-38	rpmF	-	-	J	ko:K02911	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bL32 family
BENEMHLD_00169	0.0	clpB	-	-	O	ko:K03695	ko04213,map04213	ko00000,ko00001,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
BENEMHLD_00170	5.47e-63	-	-	-	S	-	-	-	Lipopolysaccharide assembly protein A domain
BENEMHLD_00171	1.89e-183	yqjQ	-	-	S	ko:K07124	-	ko00000	Enoyl-(Acyl carrier protein) reductase
BENEMHLD_00172	3.56e-233	rnz	3.1.26.11	-	J	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
BENEMHLD_00173	0.0	oatA	-	-	I	-	-	-	Acyltransferase
BENEMHLD_00174	3.04e-296	obg	-	-	S	ko:K03979	-	ko00000,ko01000,ko03009	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BENEMHLD_00175	5.84e-172	fruR	-	-	K	ko:K03436	-	ko00000,ko03000	DeoR C terminal sensor domain
BENEMHLD_00176	2.27e-217	pfkB	2.7.1.56	-	H	ko:K00882	ko00051,map00051	ko00000,ko00001,ko01000	Belongs to the carbohydrate kinase PfkB family. LacC subfamily
BENEMHLD_00177	0.0	fruA	2.7.1.202	-	GT	ko:K02768,ko:K02769,ko:K02770	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphotransferase System
BENEMHLD_00178	0.0	uvrC	-	-	L	ko:K03703	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
BENEMHLD_00179	1.33e-172	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_00180	0.0	glnPH2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
BENEMHLD_00181	2.34e-28	-	-	-	-	-	-	-	-
BENEMHLD_00182	2.28e-63	-	-	-	S	-	-	-	mazG nucleotide pyrophosphohydrolase
BENEMHLD_00183	5.12e-139	engB	-	-	D	ko:K03978	-	ko00000,ko03036	Necessary for normal cell division and for the maintenance of normal septation
BENEMHLD_00184	5.9e-297	clpX	-	-	O	ko:K03544	ko04112,map04112	ko00000,ko00001,ko03110	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BENEMHLD_00185	8.34e-271	tig	-	-	D	ko:K03545	-	ko00000	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
BENEMHLD_00186	0.0	yknV	-	-	V	ko:K11085	ko02010,map02010	ko00000,ko00001,ko01000,ko02000	ABC transporter
BENEMHLD_00187	1.02e-85	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
BENEMHLD_00188	1.12e-83	pcaC	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Carboxymuconolactone decarboxylase family
BENEMHLD_00189	1.64e-177	-	-	-	K	ko:K12410	-	ko00000,ko01000	Sir2 family
BENEMHLD_00190	1.55e-68	-	-	-	M	-	-	-	Protein of unknown function (DUF3737)
BENEMHLD_00191	1.27e-65	-	-	-	M	-	-	-	Protein of unknown function (DUF3737)
BENEMHLD_00192	4.73e-286	tuf	-	-	J	ko:K02358,ko:K15771	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03012,ko03029,ko04147	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BENEMHLD_00193	8.8e-209	-	-	-	S	-	-	-	Tetratricopeptide repeat
BENEMHLD_00194	0.0	rnjB	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BENEMHLD_00195	1.24e-163	-	-	-	-	-	-	-	-
BENEMHLD_00196	2.48e-57	rpsO	-	-	J	ko:K02956	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BENEMHLD_00197	1.01e-47	rpsT	-	-	J	ko:K02968	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 16S ribosomal RNA
BENEMHLD_00198	7.05e-248	holA	2.7.7.7	-	L	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III delta subunit
BENEMHLD_00199	0.0	comEC	-	-	S	ko:K02238	-	ko00000,ko00002,ko02044	Competence protein ComEC
BENEMHLD_00200	4.3e-151	comEA	-	-	L	ko:K02237	-	ko00000,ko00002,ko02044	Competence protein ComEA
BENEMHLD_00201	2.13e-249	lon	-	-	T	ko:K07177	ko02024,map02024	ko00000,ko00001,ko01002	Belongs to the peptidase S16 family
BENEMHLD_00202	2.96e-111	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BENEMHLD_00203	2.48e-130	rsmD	2.1.1.171	-	L	ko:K08316	-	ko00000,ko01000,ko03009	RNA methyltransferase, RsmD family
BENEMHLD_00204	2.84e-75	ylbG	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2129)
BENEMHLD_00205	0.0	pyc	6.4.1.1	-	C	ko:K01958	ko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
BENEMHLD_00206	1.31e-268	ftsW	-	-	D	ko:K03588	ko04112,map04112	ko00000,ko00001,ko02000,ko03036	Belongs to the SEDS family
BENEMHLD_00207	0.0	typA	-	-	T	ko:K06207	-	ko00000	GTP-binding protein TypA
BENEMHLD_00208	2.22e-188	suhB	3.1.3.25	-	G	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the inositol monophosphatase superfamily
BENEMHLD_00209	8.74e-62	yktA	-	-	S	-	-	-	Belongs to the UPF0223 family
BENEMHLD_00210	7.16e-201	-	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	L-malate dehydrogenase activity
BENEMHLD_00211	0.0	pdhD	1.8.1.4	-	C	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	Dehydrogenase
BENEMHLD_00212	7.46e-283	pdhC	2.3.1.12	-	C	ko:K00627	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
BENEMHLD_00213	4.67e-232	pdhB	1.2.4.1	-	C	ko:K00162	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	br01601,ko00000,ko00001,ko00002,ko01000	Transketolase, C-terminal domain protein
BENEMHLD_00214	1.65e-266	pdhA	1.2.4.1	-	C	ko:K00161	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230	br01601,ko00000,ko00001,ko00002,ko01000	Dehydrogenase E1 component
BENEMHLD_00215	1.4e-174	-	-	-	S	-	-	-	E1-E2 ATPase
BENEMHLD_00216	1.96e-131	def	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
BENEMHLD_00217	1.78e-97	-	-	-	-	-	-	-	-
BENEMHLD_00219	4.07e-43	ykzG	-	-	S	-	-	-	Belongs to the UPF0356 family
BENEMHLD_00220	0.0	rnjA	-	-	J	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BENEMHLD_00221	7.21e-236	ytlR	-	-	I	-	-	-	Diacylglycerol kinase catalytic domain
BENEMHLD_00222	2.35e-311	-	-	-	S	-	-	-	Sterol carrier protein domain
BENEMHLD_00223	0.0	recD2	3.1.11.5	-	L	ko:K03581	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity
BENEMHLD_00224	1.82e-153	-	-	-	S	-	-	-	repeat protein
BENEMHLD_00225	9.46e-159	pgm6	-	-	G	-	-	-	phosphoglycerate mutase
BENEMHLD_00227	7.18e-279	mnmA	2.8.1.13	-	J	ko:K00566	ko04122,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
BENEMHLD_00228	0.0	uvrA2	-	-	L	-	-	-	ABC transporter
BENEMHLD_00229	3.61e-77	XK27_04120	-	-	S	-	-	-	Putative amino acid metabolism
BENEMHLD_00230	5.06e-281	iscS	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
BENEMHLD_00231	2.38e-160	mtnN	3.2.2.9	-	E	ko:K01243	ko00270,ko01100,ko01230,map00270,map01100,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BENEMHLD_00232	3.34e-47	-	-	-	-	-	-	-	-
BENEMHLD_00233	7.71e-128	nudF	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	ADP-ribose pyrophosphatase
BENEMHLD_00234	1.39e-151	-	-	-	S	-	-	-	5-bromo-4-chloroindolyl phosphate hydrolysis protein
BENEMHLD_00235	6e-268	yaaN	-	-	P	-	-	-	Toxic anion resistance protein (TelA)
BENEMHLD_00236	0.0	ydiC1	-	-	EGP	-	-	-	Major Facilitator
BENEMHLD_00237	6.09e-200	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
BENEMHLD_00238	2.98e-49	cspB	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock protein
BENEMHLD_00239	0.0	ileS	6.1.1.5	-	J	ko:K01870	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BENEMHLD_00240	6e-116	divIVA	-	-	D	ko:K04074	-	ko00000,ko03036	DivIVA protein
BENEMHLD_00241	2.83e-187	ylmH	-	-	S	-	-	-	S4 domain protein
BENEMHLD_00242	8.33e-61	yggT	-	-	D	ko:K02221	-	ko00000,ko02044	integral membrane protein
BENEMHLD_00243	5.1e-102	sepF	-	-	D	ko:K09772	-	ko00000,ko03036	Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA
BENEMHLD_00244	1.09e-290	ftsZ	-	-	D	ko:K03531	ko04112,map04112	ko00000,ko00001,ko02048,ko03036,ko04812	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BENEMHLD_00245	5.19e-308	ftsA	-	-	D	ko:K03590	ko04112,map04112	ko00000,ko00001,ko03036,ko04812	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
BENEMHLD_00246	4.67e-196	divIB	-	-	D	ko:K03589	ko04112,map04112	ko00000,ko00001,ko03036	Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex
BENEMHLD_00247	1.34e-257	murG	2.4.1.227	GT28	M	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BENEMHLD_00248	0.0	murD	6.3.2.9	-	M	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BENEMHLD_00249	4.46e-228	mraY	2.7.8.13	-	M	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BENEMHLD_00250	0.0	pbpX	-	-	M	ko:K08724,ko:K12552,ko:K12556	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
BENEMHLD_00251	8.26e-80	ftsL	-	-	D	-	-	-	cell division protein FtsL
BENEMHLD_00252	2.76e-218	rsmH	2.1.1.199	-	J	ko:K03438	-	ko00000,ko01000,ko03009	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
BENEMHLD_00253	1.61e-101	mraZ	-	-	K	ko:K03925	-	ko00000	Belongs to the MraZ family
BENEMHLD_00254	1.49e-70	-	-	-	-	-	-	-	-
BENEMHLD_00255	4.32e-14	-	-	-	S	-	-	-	Protein of unknown function (DUF4044)
BENEMHLD_00256	0.0	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BENEMHLD_00257	1.99e-194	aatB	-	-	ET	ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter substrate-binding protein
BENEMHLD_00258	1.34e-145	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter
BENEMHLD_00259	2.77e-141	yecS_2	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
BENEMHLD_00260	6.07e-182	minD	-	-	D	ko:K03609	-	ko00000,ko03036,ko04812	Belongs to the ParA family
BENEMHLD_00261	3.14e-147	minC	-	-	D	ko:K03610	-	ko00000,ko03036,ko04812	Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization
BENEMHLD_00262	2.13e-113	mreD	-	-	M	ko:K03571	-	ko00000,ko03036	rod shape-determining protein MreD
BENEMHLD_00263	5.62e-193	mreC	-	-	M	ko:K03570	-	ko00000,ko03036	Involved in formation and maintenance of cell shape
BENEMHLD_00264	6.84e-229	mreB	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	cell shape determining protein MreB
BENEMHLD_00265	8.02e-152	radC	-	-	L	ko:K03630	-	ko00000	DNA repair protein
BENEMHLD_00266	1.45e-150	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
BENEMHLD_00267	1.43e-310	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
BENEMHLD_00268	0.0	valS	6.1.1.9	-	J	ko:K01873	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
BENEMHLD_00270	2.05e-151	-	-	-	K	ko:K01926	-	ko00000,ko03000	CoA binding domain
BENEMHLD_00271	1.04e-289	thiI	2.8.1.4	-	H	ko:K03151	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BENEMHLD_00272	3.27e-276	iscS2	2.8.1.7	-	E	ko:K04487	ko00730,ko01100,ko04122,map00730,map01100,map04122	ko00000,ko00001,ko01000,ko02048,ko03016,ko03029	Aminotransferase class V
BENEMHLD_00273	0.0	ezrA	-	-	D	ko:K06286	-	ko00000,ko03036	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
BENEMHLD_00274	4.28e-112	yebR	1.8.4.14	-	T	ko:K08968	ko00270,map00270	ko00000,ko00001,ko01000	GAF domain-containing protein
BENEMHLD_00275	5.31e-143	rpsD	-	-	J	ko:K02986	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BENEMHLD_00276	0.0	-	-	-	L	-	-	-	AAA domain
BENEMHLD_00277	1.45e-120	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
BENEMHLD_00278	1.67e-291	-	-	-	E	-	-	-	Amino acid permease
BENEMHLD_00279	4.16e-181	puuD	-	-	S	ko:K07010	-	ko00000,ko01002	peptidase C26
BENEMHLD_00280	1.6e-107	-	-	-	-	-	-	-	-
BENEMHLD_00281	0.0	tex	-	-	K	ko:K06959	-	ko00000	Tex-like protein N-terminal domain protein
BENEMHLD_00282	5.37e-221	yeaB	-	-	P	-	-	-	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BENEMHLD_00283	0.0	asnB	6.3.5.4	-	E	ko:K01953	ko00250,ko01100,ko01110,map00250,map01100,map01110	ko00000,ko00001,ko01000,ko01002	Asparagine synthase
BENEMHLD_00284	1.91e-178	ydeA	-	-	S	-	-	-	DJ-1/PfpI family
BENEMHLD_00285	4.32e-104	yosT	-	-	L	-	-	-	Bacterial transcription activator, effector binding domain
BENEMHLD_00286	2.25e-265	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
BENEMHLD_00287	4.33e-206	menA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	1,4-dihydroxy-2-naphthoate
BENEMHLD_00288	2.29e-226	hepT	2.5.1.30	-	H	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
BENEMHLD_00289	1.35e-283	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BENEMHLD_00290	1.04e-213	ysdB	-	-	S	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_00291	1.52e-282	ysdA	-	-	CP	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
BENEMHLD_00292	3.94e-85	ytrA	-	-	K	ko:K07979	-	ko00000,ko03000	helix_turn_helix gluconate operon transcriptional repressor
BENEMHLD_00293	5.32e-208	CcmA	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_00294	1.19e-149	-	-	-	I	-	-	-	ABC-2 family transporter protein
BENEMHLD_00295	1.76e-188	gdh	1.1.1.47	-	IQ	ko:K00034	ko00030,ko01120,ko01200,map00030,map01120,map01200	ko00000,ko00001,ko01000	reductase
BENEMHLD_00296	5.07e-238	bglH	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BENEMHLD_00297	1.75e-119	bglH	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BENEMHLD_00298	0.0	bglP	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BENEMHLD_00299	9.88e-205	bglG4	-	-	K	ko:K03488	-	ko00000,ko03000	CAT RNA binding domain
BENEMHLD_00300	0.0	msbA9	-	-	V	ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
BENEMHLD_00301	0.0	cydD1	-	-	CO	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
BENEMHLD_00302	2.22e-98	-	-	-	S	-	-	-	NusG domain II
BENEMHLD_00303	5.79e-233	-	-	-	M	-	-	-	Peptidoglycan-binding domain 1 protein
BENEMHLD_00304	1.02e-33	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_00306	1.14e-153	-	-	-	S	-	-	-	CRISPR-associated protein (Cas_Csn2)
BENEMHLD_00307	2.05e-66	cas2	-	-	L	ko:K09951	-	ko00000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
BENEMHLD_00308	1.8e-218	cas1	-	-	L	ko:K15342	-	ko00000,ko02048,ko03400	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
BENEMHLD_00309	0.0	cas9	-	-	L	ko:K09952	-	ko00000,ko01000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
BENEMHLD_00310	0.0	cydD	-	-	CO	ko:K16012	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BENEMHLD_00311	0.0	cydC	-	-	CO	ko:K16013	ko02010,map02010	ko00000,ko00001,ko02000	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydD
BENEMHLD_00312	6.13e-234	cydB	1.10.3.14	-	C	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	Cytochrome d ubiquinol oxidase subunit II
BENEMHLD_00313	0.0	cydA	1.10.3.14	-	C	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	ubiquinol oxidase
BENEMHLD_00314	2.1e-306	pdp	2.4.2.2	-	F	ko:K00756	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	pyrimidine-nucleoside phosphorylase
BENEMHLD_00315	2.92e-233	add	3.5.4.2, 3.5.4.4	-	F	ko:K01488,ko:K02029,ko:K21053	ko00230,ko01100,ko05340,map00230,map01100,map05340	ko00000,ko00001,ko00002,ko01000,ko02000	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
BENEMHLD_00316	1.18e-50	-	-	-	-	-	-	-	-
BENEMHLD_00317	5.18e-114	-	-	-	-	-	-	-	-
BENEMHLD_00318	1.57e-34	-	-	-	-	-	-	-	-
BENEMHLD_00319	1.2e-208	-	-	-	EG	-	-	-	EamA-like transporter family
BENEMHLD_00320	2.08e-145	tag	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	glycosylase
BENEMHLD_00321	2.35e-101	usp5	-	-	T	-	-	-	universal stress protein
BENEMHLD_00322	8.34e-86	-	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_00323	3.36e-185	ptp3	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
BENEMHLD_00324	5.06e-282	queG	1.17.99.6	-	C	ko:K18979	-	ko00000,ko01000,ko03016	Domain of unknown function (DUF1730)
BENEMHLD_00325	1.8e-83	-	-	-	-	-	-	-	-
BENEMHLD_00326	3e-115	bioY	-	-	S	ko:K03523	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	BioY family
BENEMHLD_00328	1.28e-132	-	-	-	Q	-	-	-	methyltransferase
BENEMHLD_00329	2.96e-146	-	-	-	T	-	-	-	Sh3 type 3 domain protein
BENEMHLD_00330	1.07e-148	-	-	-	F	-	-	-	glutamine amidotransferase
BENEMHLD_00331	4.85e-180	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2263)
BENEMHLD_00332	0.0	yhdP	-	-	S	-	-	-	Transporter associated domain
BENEMHLD_00333	2.69e-185	-	-	-	S	-	-	-	Alpha beta hydrolase
BENEMHLD_00334	9.69e-254	-	-	-	I	-	-	-	Acyltransferase
BENEMHLD_00335	0.0	ycnB	-	-	U	-	-	-	Belongs to the major facilitator superfamily
BENEMHLD_00336	2.27e-109	-	-	-	S	-	-	-	Domain of unknown function (DUF4811)
BENEMHLD_00337	1.05e-125	maf	-	-	D	ko:K06287	-	ko00000	nucleoside-triphosphate diphosphatase activity
BENEMHLD_00338	0.0	mutL	-	-	L	ko:K03572	ko03430,map03430	ko00000,ko00001,ko03400	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BENEMHLD_00339	0.0	mutS	-	-	L	ko:K03555	ko03430,map03430	ko00000,ko00001,ko03400	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BENEMHLD_00340	0.0	ydaO	-	-	E	-	-	-	amino acid
BENEMHLD_00341	7.56e-75	-	-	-	S	-	-	-	Domain of unknown function (DUF1827)
BENEMHLD_00343	0.0	groL	-	-	O	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
BENEMHLD_00344	1.7e-59	groS	-	-	O	ko:K04078	-	ko00000,ko03029,ko03110	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BENEMHLD_00345	4.3e-143	ydiL	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
BENEMHLD_00346	1.43e-251	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
BENEMHLD_00347	3.24e-250	-	-	-	-	-	-	-	-
BENEMHLD_00348	4.35e-206	-	-	-	V	ko:K01990,ko:K16921	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_00349	7.06e-81	ytrA	-	-	K	ko:K07979	-	ko00000,ko03000	helix_turn_helix gluconate operon transcriptional repressor
BENEMHLD_00350	7.76e-152	rex	-	-	K	ko:K01926	-	ko00000,ko03000	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
BENEMHLD_00351	0.0	ydiF	-	-	S	ko:K06158	-	ko00000,ko03012	ABC transporter, ATP-binding protein
BENEMHLD_00352	6.92e-66	ptcB	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_00353	4.36e-240	tsaD	2.3.1.234	-	J	ko:K01409	-	ko00000,ko01000,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BENEMHLD_00354	1.29e-128	rimI	2.3.1.128	-	K	ko:K03789	-	ko00000,ko01000,ko03009	Ribosomal-protein-alanine acetyltransferase
BENEMHLD_00355	1.33e-168	yeaZ	2.3.1.234	-	O	ko:K01409,ko:K14742	-	ko00000,ko01000,ko03016	Universal bacterial protein YeaZ
BENEMHLD_00356	1.23e-160	-	-	-	-	-	-	-	-
BENEMHLD_00357	1.32e-16	-	-	-	-	-	-	-	-
BENEMHLD_00358	4.02e-116	-	-	-	T	-	-	-	ECF transporter, substrate-specific component
BENEMHLD_00359	3.04e-232	ansB	3.5.1.1	-	EJ	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110	ko00000,ko00001,ko01000	Asparaginase
BENEMHLD_00360	9.48e-186	fat	3.1.2.21	-	I	ko:K01071	ko00061,ko01100,map00061,map01100	ko00000,ko00001,ko01000,ko01004	Acyl-ACP thioesterase
BENEMHLD_00361	5.67e-197	rsmI	2.1.1.198	-	H	ko:K07056	-	ko00000,ko01000,ko03009	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BENEMHLD_00362	2.27e-75	yabA	-	-	L	-	-	-	Involved in initiation control of chromosome replication
BENEMHLD_00363	2.04e-226	holB	2.7.7.7	-	L	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
BENEMHLD_00364	2.31e-69	yaaQ	-	-	S	-	-	-	Cyclic-di-AMP receptor
BENEMHLD_00365	3.17e-150	tmk	2.7.4.9	-	F	ko:K00943	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BENEMHLD_00366	1.35e-51	-	-	-	S	-	-	-	Protein of unknown function (DUF2508)
BENEMHLD_00367	2.17e-140	recR	-	-	L	ko:K06187	ko03440,map03440	ko00000,ko00001,ko03400	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BENEMHLD_00368	2.29e-50	yaaK	-	-	S	ko:K09747	-	ko00000	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BENEMHLD_00369	0.0	dnaX	2.7.7.7	-	L	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BENEMHLD_00370	6.49e-116	tadA	3.5.4.33	-	F	ko:K11991	-	ko00000,ko01000,ko03016	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
BENEMHLD_00371	2.82e-65	-	-	-	-	-	-	-	-
BENEMHLD_00372	5.76e-140	rsmC	2.1.1.172	-	J	ko:K00564	-	ko00000,ko01000,ko03009	Methyltransferase
BENEMHLD_00373	0.0	mprF	2.3.2.3	-	S	ko:K14205	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BENEMHLD_00374	9.88e-91	-	-	-	-	-	-	-	-
BENEMHLD_00375	2.2e-223	ccpB	-	-	K	-	-	-	lacI family
BENEMHLD_00376	0.0	prtB	3.4.21.96	-	O	ko:K01361	-	ko00000,ko01000,ko01002,ko03110	Belongs to the peptidase S8 family
BENEMHLD_00377	4.14e-202	-	5.2.1.8	-	M	ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
BENEMHLD_00378	3.91e-74	rplL	-	-	J	ko:K02935	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
BENEMHLD_00379	6.19e-109	rplJ	-	-	J	ko:K02864	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BENEMHLD_00380	1.04e-287	mdtG	-	-	EGP	ko:K08161	-	ko00000,ko02000	Transporter, major facilitator family protein
BENEMHLD_00381	1.2e-201	-	-	-	K	-	-	-	acetyltransferase
BENEMHLD_00382	8.38e-118	-	-	-	-	-	-	-	-
BENEMHLD_00383	1.07e-283	yceI	-	-	G	ko:K08369	-	ko00000,ko02000	Sugar (and other) transporter
BENEMHLD_00384	8.7e-317	-	-	-	-	-	-	-	-
BENEMHLD_00385	6.93e-64	-	-	-	-	-	-	-	-
BENEMHLD_00386	0.0	-	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
BENEMHLD_00387	0.0	tagE	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
BENEMHLD_00388	0.0	gabD	1.2.1.16, 1.2.1.20, 1.2.1.79	-	C	ko:K00135	ko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Belongs to the aldehyde dehydrogenase family
BENEMHLD_00389	6.11e-129	yqaB	-	-	S	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_00390	1.33e-158	rplA	-	-	J	ko:K02863	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
BENEMHLD_00391	1.97e-92	rplK	-	-	J	ko:K02867	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BENEMHLD_00392	0.0	mgtA	3.6.3.2	-	P	ko:K01531	-	ko00000,ko01000	COG0474 Cation transport ATPase
BENEMHLD_00393	0.0	nylA	3.5.1.4	-	J	ko:K01426	ko00330,ko00360,ko00380,ko00627,ko00643,ko01120,map00330,map00360,map00380,map00627,map00643,map01120	ko00000,ko00001,ko01000	Belongs to the amidase family
BENEMHLD_00394	2.14e-123	yvqK	2.5.1.17	-	S	ko:K00798	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko00002,ko01000	Cobalamin adenosyltransferase
BENEMHLD_00395	2.2e-117	-	-	-	S	ko:K16927	-	ko00000,ko00002,ko02000	ECF transporter, substrate-specific component
BENEMHLD_00396	2.89e-82	-	-	-	S	-	-	-	Domain of unknown function (DUF4430)
BENEMHLD_00397	0.0	rtpR	1.17.4.2	-	F	ko:K00527	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	ribonucleoside-triphosphate reductase activity
BENEMHLD_00398	6.51e-103	-	2.4.2.6	-	F	ko:K08728	ko00240,map00240	ko00000,ko00001,ko01000	nucleoside 2-deoxyribosyltransferase
BENEMHLD_00399	5.74e-204	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
BENEMHLD_00400	8e-131	nusG	-	-	K	ko:K02601	-	ko00000,ko03009,ko03021	Participates in transcription elongation, termination and antitermination
BENEMHLD_00401	2.53e-31	secE	-	-	U	ko:K03073	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation
BENEMHLD_00402	3.75e-30	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
BENEMHLD_00403	4.78e-222	ubiA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	1,4-dihydroxy-2-naphthoate
BENEMHLD_00404	3.19e-212	menA	2.5.1.74	-	M	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	UbiA prenyltransferase family
BENEMHLD_00405	2.9e-252	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
BENEMHLD_00406	2.67e-295	tnpB	-	-	L	ko:K07496	-	ko00000	Putative transposase DNA-binding domain
BENEMHLD_00407	7.5e-190	cad	-	-	S	ko:K20379	ko02024,map02024	ko00000,ko00001	FMN_bind
BENEMHLD_00408	0.0	ndh	1.6.99.3	-	C	ko:K03885	ko00190,map00190	ko00000,ko00001,ko01000	NADH dehydrogenase
BENEMHLD_00409	2.87e-106	-	-	-	S	-	-	-	NusG domain II
BENEMHLD_00410	7.23e-128	hepA	2.5.1.30	-	S	ko:K00805	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Heptaprenyl diphosphate synthase component I
BENEMHLD_00411	9.42e-232	hepT	2.5.1.30, 2.5.1.83	-	H	ko:K00805,ko:K21275	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
BENEMHLD_00412	1.21e-109	-	-	-	-	-	-	-	-
BENEMHLD_00413	1.2e-196	prpA3	3.1.3.16	-	T	ko:K01090	-	ko00000,ko01000	Calcineurin-like phosphoesterase superfamily domain
BENEMHLD_00414	4.09e-125	-	-	-	-	-	-	-	-
BENEMHLD_00415	3.21e-212	-	-	-	-	-	-	-	-
BENEMHLD_00416	5.07e-203	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_00417	7.53e-285	-	-	-	-	-	-	-	-
BENEMHLD_00418	3.25e-253	-	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
BENEMHLD_00419	5.66e-159	-	1.5.1.40	-	S	ko:K06988	-	ko00000,ko01000	Rossmann-like domain
BENEMHLD_00420	7.66e-251	XK27_00915	-	-	C	-	-	-	Luciferase-like monooxygenase
BENEMHLD_00421	1.45e-126	yacP	-	-	S	ko:K06962	-	ko00000	YacP-like NYN domain
BENEMHLD_00422	5.24e-185	trmH	2.1.1.185	-	J	ko:K03218	-	ko00000,ko01000,ko03009	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BENEMHLD_00423	2.79e-97	mrnC	-	-	J	ko:K11145	-	ko00000,ko01000,ko03009	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
BENEMHLD_00424	0.0	cysS	6.1.1.16	-	J	ko:K01883	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
BENEMHLD_00425	1.16e-208	-	-	-	K	-	-	-	sequence-specific DNA binding
BENEMHLD_00426	4.53e-133	loxD	1.1.3.15	-	C	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	ko00000,ko00001,ko01000	FAD linked oxidases, C-terminal domain
BENEMHLD_00427	5.9e-192	loxD	1.1.3.15	-	C	ko:K00104	ko00630,ko01100,ko01110,ko01120,ko01130,map00630,map01100,map01110,map01120,map01130	ko00000,ko00001,ko01000	FAD linked oxidases, C-terminal domain
BENEMHLD_00428	1.05e-135	-	-	-	-	-	-	-	-
BENEMHLD_00430	0.0	gltX	6.1.1.24	-	J	ko:K09698	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BENEMHLD_00431	4.13e-190	yhfC	-	-	S	-	-	-	Putative membrane peptidase family (DUF2324)
BENEMHLD_00432	2.37e-227	-	-	-	S	-	-	-	Membrane
BENEMHLD_00433	3.03e-83	-	-	-	K	-	-	-	helix_turn_helix gluconate operon transcriptional repressor
BENEMHLD_00434	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
BENEMHLD_00435	7.55e-302	inlJ	-	-	M	-	-	-	MucBP domain
BENEMHLD_00436	2.83e-151	-	-	-	K	-	-	-	sequence-specific DNA binding
BENEMHLD_00437	1.06e-258	yacL	-	-	S	-	-	-	domain protein
BENEMHLD_00438	0.0	radA	-	-	O	ko:K04485	-	ko00000,ko03400	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
BENEMHLD_00439	4.49e-130	dut	3.6.1.23	-	F	ko:K01520	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	dUTPase
BENEMHLD_00440	5.8e-66	yjdJ	-	-	S	ko:K06975	-	ko00000	GCN5-related N-acetyl-transferase
BENEMHLD_00441	0.0	pepE	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	aminopeptidase
BENEMHLD_00442	0.0	pepC	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
BENEMHLD_00443	4.64e-255	-	-	-	-	-	-	-	-
BENEMHLD_00444	3.39e-275	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
BENEMHLD_00445	1.79e-212	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_00446	0.0	kup	-	-	P	ko:K03549	-	ko00000,ko02000	Transport of potassium into the cell
BENEMHLD_00447	0.0	ppdK	2.7.9.1	-	G	ko:K01006	ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the PEP-utilizing enzyme family
BENEMHLD_00448	2.02e-120	ccpN	-	-	K	-	-	-	Domain in cystathionine beta-synthase and other proteins.
BENEMHLD_00449	9.8e-158	gpmA1	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BENEMHLD_00450	1.4e-259	ltrA	-	-	S	-	-	-	Bacterial low temperature requirement A protein (LtrA)
BENEMHLD_00451	5.45e-61	-	-	-	-	-	-	-	-
BENEMHLD_00452	3.6e-266	lctO	1.13.12.4	-	C	ko:K00467,ko:K10530	ko00620,map00620	ko00000,ko00001,ko01000	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
BENEMHLD_00453	9.49e-26	-	-	-	S	-	-	-	CsbD-like
BENEMHLD_00457	2.13e-44	-	-	-	-	-	-	-	-
BENEMHLD_00458	7.81e-46	-	-	-	-	-	-	-	-
BENEMHLD_00459	4.93e-286	-	-	-	EGP	-	-	-	Transmembrane secretion effector
BENEMHLD_00460	4.09e-289	proA	1.2.1.41	-	E	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BENEMHLD_00461	7.14e-192	proB	2.7.2.11	-	F	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BENEMHLD_00463	2.13e-124	-	-	-	-	-	-	-	-
BENEMHLD_00464	2.19e-184	-	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	Sortase family
BENEMHLD_00465	0.0	-	-	-	M	-	-	-	Cna protein B-type domain
BENEMHLD_00466	0.0	-	-	-	M	-	-	-	domain protein
BENEMHLD_00467	0.0	-	-	-	M	-	-	-	domain protein
BENEMHLD_00468	4.45e-133	-	-	-	-	-	-	-	-
BENEMHLD_00469	2.68e-295	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
BENEMHLD_00470	2.52e-265	-	-	-	S	-	-	-	Protein of unknown function (DUF2974)
BENEMHLD_00471	2.91e-146	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BENEMHLD_00472	5.62e-75	padR	-	-	K	ko:K10947	-	ko00000,ko03000	Transcriptional regulator PadR-like family
BENEMHLD_00473	4.99e-179	-	-	-	-	-	-	-	-
BENEMHLD_00474	3.12e-176	-	-	-	-	-	-	-	-
BENEMHLD_00475	3.12e-61	-	-	-	S	-	-	-	Enterocin A Immunity
BENEMHLD_00476	1.12e-239	tas	-	-	C	-	-	-	Aldo/keto reductase family
BENEMHLD_00477	0.0	-	-	-	S	-	-	-	Putative threonine/serine exporter
BENEMHLD_00478	5.9e-78	-	-	-	-	-	-	-	-
BENEMHLD_00479	6.29e-307	mesE	-	-	M	ko:K12293,ko:K20345	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko02000	Transport protein ComB
BENEMHLD_00480	0.0	comA	-	-	V	ko:K06147,ko:K06148,ko:K12292,ko:K20344	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko01000,ko02000	ABC-type bacteriocin lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
BENEMHLD_00482	6.26e-289	comD	2.7.13.3	-	T	ko:K07706,ko:K12294	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	ATPase histidine kinase DNA gyrase B HSP90 domain protein
BENEMHLD_00483	3.25e-180	plnD	-	-	K	ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
BENEMHLD_00486	1.16e-62	-	-	-	S	-	-	-	Enterocin A Immunity
BENEMHLD_00487	1.93e-31	-	-	-	-	-	-	-	-
BENEMHLD_00491	2.86e-177	-	-	-	S	-	-	-	CAAX protease self-immunity
BENEMHLD_00492	6.02e-94	-	-	-	K	-	-	-	Transcriptional regulator
BENEMHLD_00493	0.0	norB	-	-	EGP	ko:K08170	-	ko00000,ko00002,ko01504,ko02000	Major Facilitator Superfamily
BENEMHLD_00494	6.33e-72	-	-	-	-	-	-	-	-
BENEMHLD_00495	1.36e-72	-	-	-	S	-	-	-	Enterocin A Immunity
BENEMHLD_00496	7.17e-232	ydhF	-	-	S	-	-	-	Aldo keto reductase
BENEMHLD_00497	1.28e-168	-	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
BENEMHLD_00498	1.18e-276	yqiG	-	-	C	-	-	-	Oxidoreductase
BENEMHLD_00499	1.98e-34	-	-	-	S	-	-	-	Short C-terminal domain
BENEMHLD_00500	0.0	fumC	4.2.1.2	-	C	ko:K01679	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211	ko00000,ko00001,ko00002,ko01000	Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate
BENEMHLD_00501	5.67e-175	-	-	-	-	-	-	-	-
BENEMHLD_00502	4.49e-26	-	-	-	-	-	-	-	-
BENEMHLD_00503	0.0	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
BENEMHLD_00504	0.0	atp2C1	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
BENEMHLD_00505	4.42e-84	-	-	-	-	-	-	-	-
BENEMHLD_00506	2.79e-289	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
BENEMHLD_00507	0.0	sufI	-	-	Q	-	-	-	Multicopper oxidase
BENEMHLD_00508	2.5e-34	-	-	-	-	-	-	-	-
BENEMHLD_00509	2.06e-145	-	-	-	P	-	-	-	Cation efflux family
BENEMHLD_00510	1.68e-67	czrA	-	-	K	ko:K22043	-	ko00000,ko03000	Transcriptional regulator, ArsR family
BENEMHLD_00511	3.81e-225	mntA	-	-	P	ko:K19975,ko:K19976	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
BENEMHLD_00512	9.44e-186	mtsB	-	-	U	ko:K19972,ko:K19976	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC 3 transport family
BENEMHLD_00513	4.8e-170	mntB	3.6.3.35	-	P	ko:K02074,ko:K09820,ko:K19973	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
BENEMHLD_00514	8.32e-56	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BENEMHLD_00515	1.17e-215	psaA	-	-	P	ko:K02077,ko:K11707	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
BENEMHLD_00516	1.4e-152	-	-	-	GM	-	-	-	NmrA-like family
BENEMHLD_00517	2.63e-113	-	-	-	-	-	-	-	-
BENEMHLD_00518	5.12e-212	psaA	-	-	P	ko:K02077,ko:K11707	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the bacterial solute-binding protein 9 family
BENEMHLD_00519	7.32e-28	-	-	-	-	-	-	-	-
BENEMHLD_00521	9.85e-72	crcB	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BENEMHLD_00522	9.16e-91	crcB1	-	-	U	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BENEMHLD_00523	0.0	-	-	-	G	ko:K03292,ko:K16210	-	ko00000,ko02000	MFS/sugar transport protein
BENEMHLD_00524	0.0	-	3.2.1.40	-	G	ko:K05989	-	ko00000,ko01000	Bacterial alpha-L-rhamnosidase concanavalin-like domain
BENEMHLD_00525	6.75e-220	ssuA	-	-	P	ko:K02051,ko:K15553	ko00920,ko02010,map00920,map02010	ko00000,ko00001,ko00002,ko02000	NMT1-like family
BENEMHLD_00526	0.0	-	6.2.1.48	-	IQ	ko:K02182	-	ko00000,ko01000	AMP-binding enzyme C-terminal domain
BENEMHLD_00527	1.25e-301	-	-	-	I	-	-	-	Acyltransferase family
BENEMHLD_00528	4.26e-157	ssuB	-	-	P	ko:K15555	ko00920,ko02010,map00920,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_00529	5.24e-191	ssuC	-	-	U	ko:K15554	ko00920,ko02010,map00920,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BENEMHLD_00530	7.77e-159	-	-	-	S	-	-	-	B3/4 domain
BENEMHLD_00531	0.0	-	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
BENEMHLD_00532	0.0	-	-	-	V	-	-	-	ATPases associated with a variety of cellular activities
BENEMHLD_00533	3.91e-268	-	-	-	EGP	-	-	-	Transmembrane secretion effector
BENEMHLD_00534	2.02e-83	yugI	-	-	J	ko:K07570	-	ko00000	general stress protein
BENEMHLD_00535	3.11e-142	ppiB	5.2.1.8	-	G	ko:K03768	-	ko00000,ko01000,ko03110	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BENEMHLD_00536	6.69e-238	yumC	1.18.1.2, 1.19.1.1	-	C	ko:K21567	-	ko00000,ko01000	Ferredoxin--NADP reductase
BENEMHLD_00537	6.48e-115	pgpA	3.1.3.27	-	I	ko:K01095	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Phosphatidylglycerophosphatase A
BENEMHLD_00538	4.31e-149	dedA	-	-	S	ko:K03975	-	ko00000	SNARE-like domain protein
BENEMHLD_00539	6.18e-150	-	-	-	S	-	-	-	Protein of unknown function (DUF1461)
BENEMHLD_00540	4.68e-187	nagD	3.1.3.41	-	G	ko:K01101	ko00627,ko01120,map00627,map01120	ko00000,ko00001,ko01000	Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro
BENEMHLD_00541	5.33e-147	yutD	-	-	S	-	-	-	Protein of unknown function (DUF1027)
BENEMHLD_00542	0.0	yunD	3.1.3.5	-	F	ko:K01081	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the 5'-nucleotidase family
BENEMHLD_00543	1.94e-148	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
BENEMHLD_00544	2.41e-153	yibF	-	-	S	-	-	-	overlaps another CDS with the same product name
BENEMHLD_00545	6.93e-240	yibE	-	-	S	-	-	-	overlaps another CDS with the same product name
BENEMHLD_00546	3.48e-73	-	-	-	-	-	-	-	-
BENEMHLD_00547	0.0	glpQ	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Glycerophosphoryl diester phosphodiesterase family
BENEMHLD_00548	0.0	pepV	3.5.1.18	-	E	ko:K01270,ko:K01274,ko:K01439	ko00300,ko00480,ko01100,ko01120,ko01230,map00300,map00480,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	dipeptidase PepV
BENEMHLD_00549	2.05e-174	birA	6.3.4.15	-	H	ko:K03524	ko00780,ko01100,map00780,map01100	ko00000,ko00001,ko01000,ko03000	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor
BENEMHLD_00550	1.51e-163	yfnB	3.8.1.2	-	S	ko:K01560,ko:K07025	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	ko00000,ko00001,ko01000	HAD-hyrolase-like
BENEMHLD_00551	0.0	pbp1B	2.4.1.129	GT51	M	ko:K03693,ko:K12551	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	Penicillin binding protein transpeptidase domain
BENEMHLD_00552	6.12e-232	ccpA	-	-	K	ko:K02529	-	ko00000,ko03000	catabolite control protein A
BENEMHLD_00553	5.39e-275	pepQ	3.4.13.9	-	E	ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
BENEMHLD_00554	4.48e-120	yrxA	-	-	S	ko:K07105	-	ko00000	3H domain
BENEMHLD_00555	4.56e-110	ytxH	-	-	S	-	-	-	YtxH-like protein
BENEMHLD_00556	7.19e-40	ytxG	-	-	S	-	-	-	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
BENEMHLD_00558	5.26e-202	ykuT	-	-	M	ko:K16052,ko:K22044	-	ko00000,ko02000	mechanosensitive ion channel
BENEMHLD_00559	1.76e-203	-	-	-	S	ko:K08974	-	ko00000	Domain of unknown function (DUF368)
BENEMHLD_00560	4.62e-112	ykuL	-	-	S	-	-	-	CBS domain
BENEMHLD_00561	2.59e-172	gla	-	-	U	ko:K02440	-	ko00000,ko02000	Major intrinsic protein
BENEMHLD_00562	9.48e-125	ysnB	-	-	S	ko:K07095	-	ko00000	Phosphoesterase
BENEMHLD_00563	0.0	murI	3.6.1.66, 5.1.1.3	-	M	ko:K01776,ko:K02428	ko00230,ko00471,ko01100,map00230,map00471,map01100	ko00000,ko00001,ko01000,ko01011	Provides the (R)-glutamate required for cell wall biosynthesis
BENEMHLD_00564	1.18e-109	yslB	-	-	S	-	-	-	Protein of unknown function (DUF2507)
BENEMHLD_00565	1.28e-315	dltD	-	-	M	ko:K03740	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
BENEMHLD_00566	1.2e-49	dltC	6.1.1.13	-	J	ko:K14188	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
BENEMHLD_00567	1.46e-305	dltB	-	-	M	ko:K03739	ko01503,ko02020,ko05150,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01504	MBOAT, membrane-bound O-acyltransferase family
BENEMHLD_00568	0.0	dltA	6.1.1.13	-	H	ko:K03367	ko00473,ko01503,ko02020,ko05150,map00473,map01503,map02020,map05150	ko00000,ko00001,ko00002,ko01000,ko01504	Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP- dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall
BENEMHLD_00569	3.64e-70	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
BENEMHLD_00570	0.0	mutS2	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
BENEMHLD_00571	7.74e-121	cvpA	-	-	S	-	-	-	Colicin V production protein
BENEMHLD_00572	3.45e-49	-	-	-	D	ko:K09888	-	ko00000,ko03036	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
BENEMHLD_00573	1.85e-69	yrzB	-	-	S	-	-	-	Belongs to the UPF0473 family
BENEMHLD_00574	1.32e-96	yrrK	-	-	J	ko:K07447	-	ko00000,ko01000	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BENEMHLD_00575	4.89e-58	yrzL	-	-	S	-	-	-	Belongs to the UPF0297 family
BENEMHLD_00576	9.98e-267	-	-	-	-	-	-	-	-
BENEMHLD_00577	0.0	alaS	6.1.1.7	-	J	ko:K01872	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BENEMHLD_00578	2.11e-221	-	-	-	-	-	-	-	-
BENEMHLD_00579	0.0	cshB	3.6.4.13	-	JKL	ko:K05592,ko:K18692	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
BENEMHLD_00580	6.11e-229	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHHA1 domain protein
BENEMHLD_00581	1.54e-305	ytoI	-	-	K	-	-	-	DRTGG domain
BENEMHLD_00582	7.56e-266	dinB	2.7.7.7	-	L	ko:K02346	-	ko00000,ko01000,ko03400	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BENEMHLD_00583	0.0	zwf	1.1.1.363, 1.1.1.49	-	G	ko:K00036	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BENEMHLD_00584	1.45e-150	mntR	-	-	K	ko:K03709	-	ko00000,ko03000	Helix-turn-helix diphteria tox regulatory element
BENEMHLD_00585	0.0	adhE	1.1.1.1, 1.2.1.10	-	C	ko:K04072	ko00010,ko00071,ko00350,ko00620,ko00625,ko00626,ko00650,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00620,map00625,map00626,map00650,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	belongs to the iron- containing alcohol dehydrogenase family
BENEMHLD_00586	4.29e-87	yajC	-	-	U	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
BENEMHLD_00587	1.71e-289	tgt	2.4.2.29	-	F	ko:K00773	-	ko00000,ko01000,ko03016	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
BENEMHLD_00588	2.16e-264	queA	2.4.99.17	-	J	ko:K07568	-	ko00000,ko01000,ko03016	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BENEMHLD_00589	4.98e-250	ruvB	3.6.4.12	-	L	ko:K03551	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
BENEMHLD_00590	2.42e-132	ruvA	3.6.4.12	-	L	ko:K03550	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
BENEMHLD_00591	8.81e-135	yjbF	-	-	S	-	-	-	SNARE associated Golgi protein
BENEMHLD_00592	1.19e-112	luxS	4.4.1.21	-	H	ko:K07173	ko00270,ko01100,ko01230,ko02024,ko02026,ko05111,map00270,map01100,map01230,map02024,map02026,map05111	ko00000,ko00001,ko00002,ko01000	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)
BENEMHLD_00593	5.92e-284	metE	2.1.1.14	-	E	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	methionine synthase, vitamin-B12 independent
BENEMHLD_00594	5.25e-96	-	-	-	S	-	-	-	Protein of unknown function (DUF3290)
BENEMHLD_00595	1.57e-150	yviA	-	-	S	-	-	-	Protein of unknown function (DUF421)
BENEMHLD_00596	2.64e-209	-	-	-	S	-	-	-	Alpha beta hydrolase
BENEMHLD_00597	1.84e-161	-	-	-	-	-	-	-	-
BENEMHLD_00598	3.19e-202	dkgB	-	-	S	-	-	-	reductase
BENEMHLD_00599	2.14e-110	nrdI	-	-	F	ko:K03647	-	ko00000	Belongs to the NrdI family
BENEMHLD_00600	6.89e-231	ybcH	-	-	D	ko:K06889	-	ko00000	Alpha beta
BENEMHLD_00601	6.42e-101	-	-	-	K	-	-	-	Transcriptional regulator
BENEMHLD_00602	6.4e-156	XK27_05175	3.1.3.18	-	S	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	ko00000,ko00001,ko01000	haloacid dehalogenase-like hydrolase
BENEMHLD_00603	2.39e-257	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
BENEMHLD_00604	1.09e-120	-	-	-	J	-	-	-	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BENEMHLD_00605	1.03e-77	-	-	-	-	-	-	-	-
BENEMHLD_00606	2.31e-232	-	3.4.11.5	-	I	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
BENEMHLD_00607	0.0	yfgQ	-	-	P	ko:K12952	-	ko00000,ko01000	E1-E2 ATPase
BENEMHLD_00608	2.32e-79	-	-	-	-	-	-	-	-
BENEMHLD_00609	2.01e-102	ndk	2.7.4.6	-	F	ko:K00940	ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016	ko00000,ko00001,ko00002,ko01000,ko04131	Belongs to the NDK family
BENEMHLD_00610	0.0	pepF	-	-	E	-	-	-	Oligopeptidase F
BENEMHLD_00611	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
BENEMHLD_00612	1.38e-228	-	-	-	K	-	-	-	sequence-specific DNA binding
BENEMHLD_00613	7.23e-124	-	-	-	-	-	-	-	-
BENEMHLD_00614	5.79e-117	tpx	1.11.1.15	-	O	ko:K11065	-	ko00000,ko01000	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
BENEMHLD_00615	8.81e-218	mleP	-	-	S	ko:K07088	-	ko00000	Sodium Bile acid symporter family
BENEMHLD_00616	0.0	mleS	1.1.1.38, 4.1.1.101	-	C	ko:K00027,ko:K22212	ko00620,ko01120,ko01200,ko02020,map00620,map01120,map01200,map02020	ko00000,ko00001,ko01000	Malic enzyme
BENEMHLD_00617	5.11e-208	mleR	-	-	K	-	-	-	LysR family
BENEMHLD_00618	1.05e-221	-	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
BENEMHLD_00619	5.06e-83	yeaO	-	-	S	-	-	-	Protein of unknown function, DUF488
BENEMHLD_00620	1e-136	fthC	6.3.3.2	-	H	ko:K01934	ko00670,ko01100,map00670,map01100	ko00000,ko00001,ko01000	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BENEMHLD_00621	1.77e-185	-	-	-	-	-	-	-	-
BENEMHLD_00622	2.82e-139	-	-	-	S	-	-	-	Flavin reductase like domain
BENEMHLD_00623	3.6e-215	mleP2	-	-	S	ko:K07088	-	ko00000	Transporter, auxin efflux carrier (AEC) family protein
BENEMHLD_00624	5.63e-102	-	-	-	-	-	-	-	-
BENEMHLD_00625	2.46e-130	lexA	3.4.21.88	-	K	ko:K01356	-	ko00000,ko00002,ko01000,ko01002,ko03400	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BENEMHLD_00626	1.99e-36	-	-	-	-	-	-	-	-
BENEMHLD_00627	5.52e-265	XK27_05220	-	-	S	-	-	-	AI-2E family transporter
BENEMHLD_00628	6.82e-104	-	-	-	-	-	-	-	-
BENEMHLD_00629	5.83e-75	-	-	-	-	-	-	-	-
BENEMHLD_00630	2.09e-243	-	1.1.1.1, 1.6.5.5	-	C	ko:K00001,ko:K00344	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily
BENEMHLD_00631	1.46e-65	-	-	-	-	-	-	-	-
BENEMHLD_00632	2.05e-66	ygbF	-	-	S	-	-	-	Sugar efflux transporter for intercellular exchange
BENEMHLD_00633	5.58e-76	-	-	-	K	ko:K10947	-	ko00000,ko03000	Transcriptional regulator PadR-like family
BENEMHLD_00634	3.31e-237	-	-	-	K	-	-	-	sequence-specific DNA binding
BENEMHLD_00637	3.88e-264	lldD	1.13.12.4	-	C	ko:K00467	ko00620,map00620	ko00000,ko00001,ko01000	IMP dehydrogenase / GMP reductase domain
BENEMHLD_00638	1.77e-158	ydgI	-	-	C	-	-	-	Nitroreductase family
BENEMHLD_00639	6.7e-203	adc	4.1.1.4	-	Q	ko:K01574	ko00072,ko00640,ko01100,map00072,map00640,map01100	ko00000,ko00001,ko00002,ko01000	Acetoacetate decarboxylase (ADC)
BENEMHLD_00640	5.32e-207	-	-	-	S	-	-	-	KR domain
BENEMHLD_00641	0.0	-	-	-	QT	-	-	-	PucR C-terminal helix-turn-helix domain
BENEMHLD_00642	8.06e-87	-	-	-	S	-	-	-	Belongs to the HesB IscA family
BENEMHLD_00643	3.94e-309	ciaH	2.7.13.3	-	T	ko:K14982	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	His Kinase A (phosphoacceptor) domain
BENEMHLD_00644	4.31e-165	ciaR	-	-	K	ko:K14983	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	cheY-homologous receiver domain
BENEMHLD_00645	2.19e-15	-	-	-	-	-	-	-	-
BENEMHLD_00646	2.64e-94	-	-	-	S	-	-	-	GtrA-like protein
BENEMHLD_00647	0.0	ykcB	-	-	M	-	-	-	Dolichyl-phosphate-mannose-protein mannosyltransferase
BENEMHLD_00648	8.07e-233	ykcC	-	GT2	M	ko:K20534	-	ko00000,ko01000,ko01005,ko02000	Glycosyl transferase family 2
BENEMHLD_00649	0.0	pacL3	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	Cation transporter/ATPase, N-terminus
BENEMHLD_00650	3.51e-224	-	1.1.1.1	-	C	ko:K00001	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	Zinc-binding dehydrogenase
BENEMHLD_00651	4.1e-181	-	-	-	S	ko:K05833	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_00652	1.68e-208	WQ51_06230	-	-	U	ko:K05832	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
BENEMHLD_00653	2.52e-216	XK27_00670	-	-	S	ko:K01989,ko:K05832	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_00655	7.85e-216	XK27_00670	-	-	S	ko:K01989,ko:K05832	-	ko00000,ko00002,ko02000	ABC transporter substrate binding protein
BENEMHLD_00657	0.0	bglB	3.2.1.21, 3.2.1.52	GH3	G	ko:K01207,ko:K05349	ko00460,ko00500,ko00520,ko00531,ko00940,ko01100,ko01110,ko01501,map00460,map00500,map00520,map00531,map00940,map01100,map01110,map01501	ko00000,ko00001,ko00002,ko01000	hydrolase, family 3
BENEMHLD_00658	1.34e-152	-	-	-	S	ko:K07118	-	ko00000	NmrA-like family
BENEMHLD_00660	3.97e-254	-	-	-	-	-	-	-	-
BENEMHLD_00661	3.31e-197	thiD	2.7.1.49, 2.7.4.7	-	H	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Phosphomethylpyrimidine kinase
BENEMHLD_00662	1.34e-115	-	-	-	S	-	-	-	Short repeat of unknown function (DUF308)
BENEMHLD_00664	3.65e-157	yrkL	-	-	S	-	-	-	Flavodoxin-like fold
BENEMHLD_00665	4.7e-194	-	-	-	I	-	-	-	alpha/beta hydrolase fold
BENEMHLD_00666	6.38e-271	mutY	-	-	L	ko:K03575	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	A G-specific adenine glycosylase
BENEMHLD_00667	5.22e-112	hsp1	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
BENEMHLD_00668	2.78e-20	-	-	-	-	-	-	-	-
BENEMHLD_00669	0.0	sbcC	-	-	L	ko:K03546	-	ko00000,ko03400	Putative exonuclease SbcCD, C subunit
BENEMHLD_00670	8.58e-271	sbcD	-	-	L	ko:K03547	-	ko00000,ko03400	SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity
BENEMHLD_00671	7.84e-152	-	-	-	S	-	-	-	HAD hydrolase, family IA, variant
BENEMHLD_00672	2.49e-182	-	-	-	K	ko:K02530	-	ko00000,ko03000	DeoR C terminal sensor domain
BENEMHLD_00673	6.59e-96	lacA	5.3.1.26	-	G	ko:K01819	ko00052,ko01100,map00052,map01100	ko00000,ko00001,ko01000	Ribose/Galactose Isomerase
BENEMHLD_00674	1.85e-121	lacB	5.3.1.26	-	G	ko:K01819	ko00052,ko01100,map00052,map01100	ko00000,ko00001,ko01000	Ribose/Galactose Isomerase
BENEMHLD_00675	8.82e-241	lacD	4.1.2.40	-	G	ko:K01635	ko00052,ko01100,ko02024,map00052,map01100,map02024	ko00000,ko00001,ko01000	Belongs to the aldolase LacD family
BENEMHLD_00676	2.12e-226	lacC	2.7.1.144	-	H	ko:K00917	ko00052,ko01100,map00052,map01100	ko00000,ko00001,ko01000	pfkB family carbohydrate kinase
BENEMHLD_00677	9.82e-164	-	-	-	S	-	-	-	Domain of unknown function (DUF4867)
BENEMHLD_00678	2.09e-243	-	-	-	V	-	-	-	Beta-lactamase
BENEMHLD_00679	2.82e-40	-	-	-	-	-	-	-	-
BENEMHLD_00681	8.23e-290	gatC	-	-	G	ko:K20114	ko02060,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
BENEMHLD_00682	2.37e-251	galM	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of alpha and beta anomers of maltose
BENEMHLD_00683	5.88e-213	msmR	-	-	K	ko:K02529	-	ko00000,ko03000	Transcriptional regulator
BENEMHLD_00684	0.0	galT	2.7.7.12	-	G	ko:K00965	ko00052,ko00520,ko01100,ko04917,map00052,map00520,map01100,map04917	ko00000,ko00001,ko00002,ko01000	UDP-glucose--hexose-1-phosphate uridylyltransferase
BENEMHLD_00685	2.55e-248	galE	5.1.3.2	-	M	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family
BENEMHLD_00686	1.71e-284	galK	2.7.1.6	-	F	ko:K00849	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
BENEMHLD_00687	8.62e-66	lacF	2.7.1.196, 2.7.1.205, 2.7.1.207	-	G	ko:K02759,ko:K02786	ko00052,ko00500,ko01100,ko02060,map00052,map00500,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIA subunit
BENEMHLD_00688	2.93e-174	lacG	3.2.1.21, 3.2.1.85, 3.2.1.86	GT1	G	ko:K01220,ko:K01223,ko:K05350	ko00010,ko00052,ko00460,ko00500,ko00940,ko01100,ko01110,map00010,map00052,map00460,map00500,map00940,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BENEMHLD_00689	8.11e-174	lacG	3.2.1.21, 3.2.1.85, 3.2.1.86	GT1	G	ko:K01220,ko:K01223,ko:K05350	ko00010,ko00052,ko00460,ko00500,ko00940,ko01100,ko01110,map00010,map00052,map00460,map00500,map00940,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BENEMHLD_00690	0.0	lacE	2.7.1.207	-	G	ko:K02787,ko:K02788	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphotransferase system, EIIC
BENEMHLD_00691	3.54e-180	lacT	-	-	K	ko:K02531	-	ko00000,ko03000	PRD domain
BENEMHLD_00692	2.12e-09	lacT	-	-	K	ko:K02531	-	ko00000,ko03000	PRD domain
BENEMHLD_00694	4.68e-179	epsG	-	-	M	-	-	-	Glycosyltransferase like family 2
BENEMHLD_00695	0.0	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BENEMHLD_00696	0.0	glpD	1.1.3.21, 1.1.5.3	-	C	ko:K00105,ko:K00111	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	C-terminal domain of alpha-glycerophosphate oxidase
BENEMHLD_00697	2.82e-172	glpF	-	-	U	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
BENEMHLD_00698	2.67e-147	ung2	-	-	L	-	-	-	Uracil-DNA glycosylase
BENEMHLD_00699	4.42e-202	-	-	-	L	-	-	-	ATPase domain of DNA mismatch repair MUTS family
BENEMHLD_00700	2.39e-185	-	-	-	L	-	-	-	ATPase domain of DNA mismatch repair MUTS family
BENEMHLD_00701	0.0	ykpA	-	-	S	-	-	-	ABC transporter, ATP-binding protein
BENEMHLD_00703	1.51e-195	endA	-	-	F	ko:K15051	-	ko00000	DNA RNA non-specific endonuclease
BENEMHLD_00704	2.7e-154	yqgG	-	-	S	ko:K07507	-	ko00000,ko02000	MgtC family
BENEMHLD_00705	1.97e-227	ywbN	-	-	P	ko:K07223,ko:K16301	-	ko00000,ko01000,ko02000	Peroxidase
BENEMHLD_00706	5.66e-313	amt	-	-	P	ko:K03320	-	ko00000,ko02000	ammonium transporter
BENEMHLD_00707	8.8e-210	-	-	-	C	-	-	-	nadph quinone reductase
BENEMHLD_00708	5.78e-148	-	-	-	S	-	-	-	ABC-2 family transporter protein
BENEMHLD_00709	2.75e-214	-	-	-	V	ko:K01990,ko:K20490	ko02010,ko02020,ko02024,map02010,map02020,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_00710	1.59e-212	ycbM	-	-	T	-	-	-	Histidine kinase
BENEMHLD_00711	1.27e-154	-	-	-	K	-	-	-	response regulator
BENEMHLD_00712	7.57e-124	-	3.6.1.22	-	L	ko:K03426	ko00760,ko01100,ko04146,map00760,map01100,map04146	ko00000,ko00001,ko01000	NUDIX domain
BENEMHLD_00713	1.06e-69	ybjQ	-	-	S	-	-	-	Belongs to the UPF0145 family
BENEMHLD_00714	6.19e-152	cah	4.2.1.1	-	P	ko:K01674	ko00910,map00910	ko00000,ko00001,ko01000	Eukaryotic-type carbonic anhydrase
BENEMHLD_00715	8.08e-189	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
BENEMHLD_00716	4.35e-207	-	-	-	V	ko:K01990,ko:K11050	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_00717	1.14e-193	-	-	-	V	ko:K11051	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC-2 type transporter
BENEMHLD_00718	1.2e-95	-	-	-	K	-	-	-	LytTr DNA-binding domain
BENEMHLD_00719	4.03e-80	-	-	-	S	-	-	-	Protein of unknown function (DUF3021)
BENEMHLD_00720	0.0	nhaK	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
BENEMHLD_00721	0.0	-	-	-	S	-	-	-	Protein of unknown function (DUF3800)
BENEMHLD_00722	0.0	yifK	-	-	E	ko:K03293	-	ko00000	Amino acid permease
BENEMHLD_00723	1.41e-204	-	-	-	S	-	-	-	Aldo/keto reductase family
BENEMHLD_00724	2.84e-149	ylbE	-	-	GM	-	-	-	NAD(P)H-binding
BENEMHLD_00725	0.0	yjcA	-	-	S	ko:K19350	ko02010,map02010	ko00000,ko00001,ko01504,ko02000	ABC transporter
BENEMHLD_00726	1.95e-99	-	-	-	O	-	-	-	OsmC-like protein
BENEMHLD_00727	1.55e-94	-	-	-	-	-	-	-	-
BENEMHLD_00728	3.08e-43	cspA	-	-	K	ko:K03704	-	ko00000,ko03000	'Cold-shock' DNA-binding domain
BENEMHLD_00729	0.0	gdhA	1.4.1.4	-	E	ko:K00262	ko00220,ko00250,ko00910,ko01100,map00220,map00250,map00910,map01100	ko00000,ko00001,ko01000	Belongs to the Glu Leu Phe Val dehydrogenases family
BENEMHLD_00730	1.61e-221	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	lactate/malate dehydrogenase, alpha/beta C-terminal domain
BENEMHLD_00731	0.0	-	-	-	E	ko:K03294	-	ko00000	Amino Acid
BENEMHLD_00732	1.6e-275	sstT	-	-	U	ko:K07862	-	ko00000,ko02000	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
BENEMHLD_00733	0.0	treB	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BENEMHLD_00734	0.0	treC	3.2.1.93	GH13	G	ko:K01226	ko00500,map00500	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
BENEMHLD_00735	1.56e-166	treR	-	-	K	ko:K03486	-	ko00000,ko03000	UTRA
BENEMHLD_00736	8.8e-283	oxlT	-	-	P	ko:K08177	-	ko00000,ko02000	Major Facilitator Superfamily
BENEMHLD_00737	0.0	-	-	-	V	ko:K06147,ko:K18892	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_00738	0.0	XK27_09600	-	-	V	ko:K06147,ko:K18891	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_00740	0.0	metE	2.1.1.14	-	E	ko:K00549	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BENEMHLD_00741	3.21e-210	metF	1.5.1.20	-	C	ko:K00297	ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523	ko00000,ko00001,ko00002,ko01000	Methylenetetrahydrofolate reductase
BENEMHLD_00742	5.24e-192	pdxK	2.7.1.35	-	H	ko:K00868	ko00750,ko01100,map00750,map01100	ko00000,ko00001,ko01000	Phosphomethylpyrimidine kinase
BENEMHLD_00743	7.81e-282	yttB	-	-	EGP	-	-	-	Major Facilitator
BENEMHLD_00744	1.69e-191	-	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
BENEMHLD_00745	7.92e-216	-	-	-	S	-	-	-	Polyphosphate nucleotide phosphotransferase, PPK2 family
BENEMHLD_00746	0.0	pepO	-	-	O	ko:K07386	-	ko00000,ko01000,ko01002	Peptidase family M13
BENEMHLD_00747	3.32e-107	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_00748	5.78e-213	yitS	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
BENEMHLD_00749	4.79e-167	hflC	-	-	O	ko:K04087	-	ko00000,ko00002,ko01000	prohibitin homologues
BENEMHLD_00750	1.82e-41	-	-	-	-	-	-	-	-
BENEMHLD_00751	3.07e-176	-	-	-	M	ko:K07273	-	ko00000	Glycosyl hydrolases family 25
BENEMHLD_00752	3.83e-79	-	-	-	S	-	-	-	Protein of unknown function (DUF1093)
BENEMHLD_00753	3.98e-81	-	-	-	S	-	-	-	Domain of unknown function (DUF4828)
BENEMHLD_00754	2.8e-229	mocA	-	-	S	-	-	-	Oxidoreductase
BENEMHLD_00755	4.77e-306	yfmL	-	-	L	-	-	-	DEAD DEAH box helicase
BENEMHLD_00756	2.05e-63	-	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIA subunit
BENEMHLD_00757	5.45e-94	-	-	-	S	-	-	-	Domain of unknown function (DUF3284)
BENEMHLD_00759	3.06e-07	-	-	-	-	-	-	-	-
BENEMHLD_00760	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
BENEMHLD_00761	6.99e-307	pepS	-	-	E	ko:K19689	-	ko00000,ko01000,ko01002	Thermophilic metalloprotease (M29)
BENEMHLD_00762	3.46e-143	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_00763	0.0	-	-	-	S	ko:K13730	ko05100,map05100	ko00000,ko00001	Uncharacterized protein conserved in bacteria (DUF2252)
BENEMHLD_00764	3.14e-230	rbn	-	-	S	ko:K07058	-	ko00000	Belongs to the UPF0761 family
BENEMHLD_00765	3.71e-105	fld	-	-	C	ko:K03839	-	ko00000	Flavodoxin
BENEMHLD_00766	2.34e-204	map	3.4.11.18	-	E	ko:K01265	-	ko00000,ko01000,ko01002	Methionine Aminopeptidase
BENEMHLD_00767	2.38e-252	-	-	-	M	-	-	-	Glycosyltransferase like family 2
BENEMHLD_00769	2.12e-40	-	-	-	-	-	-	-	-
BENEMHLD_00770	6.6e-255	mvaK2	2.7.4.2	-	I	ko:K00938	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	phosphomevalonate kinase
BENEMHLD_00771	1.37e-219	galU	2.7.7.9	-	M	ko:K00963	ko00040,ko00052,ko00500,ko00520,ko01100,ko01130,map00040,map00052,map00500,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	UTP-glucose-1-phosphate uridylyltransferase
BENEMHLD_00772	2.37e-127	-	-	-	N	-	-	-	domain, Protein
BENEMHLD_00773	0.0	-	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BENEMHLD_00774	0.0	bglH	-	-	G	ko:K02755,ko:K02756,ko:K02757	ko02060,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BENEMHLD_00775	0.0	-	-	-	S	-	-	-	Bacterial membrane protein YfhO
BENEMHLD_00776	0.0	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
BENEMHLD_00777	3.64e-221	yfdH	-	GT2	M	ko:K12999	-	ko00000,ko01000,ko01003,ko01005	Glycosyltransferase, group 2 family protein
BENEMHLD_00778	5.01e-142	-	-	-	-	-	-	-	-
BENEMHLD_00779	2.43e-216	yqjA	-	-	S	-	-	-	Putative aromatic acid exporter C-terminal domain
BENEMHLD_00780	6.22e-43	cspC	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock protein
BENEMHLD_00781	2.69e-27	-	-	-	T	-	-	-	PFAM SpoVT AbrB
BENEMHLD_00782	8.38e-107	yvbK	-	-	K	-	-	-	GNAT family
BENEMHLD_00783	7.8e-149	acmA	3.2.1.17, 3.2.1.96	-	NU	ko:K01185,ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	mannosyl-glycoprotein
BENEMHLD_00784	6.51e-132	xpt	2.4.2.22	-	F	ko:K03816	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000	Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis
BENEMHLD_00785	1.87e-304	pbuX	-	-	F	ko:K03458,ko:K16169	-	ko00000,ko02000	xanthine permease
BENEMHLD_00786	4.2e-264	purK2	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BENEMHLD_00787	1.93e-316	purB	4.3.2.2	-	F	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BENEMHLD_00789	1.8e-134	-	-	-	-	-	-	-	-
BENEMHLD_00790	5.8e-167	-	-	-	-	-	-	-	-
BENEMHLD_00791	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
BENEMHLD_00792	1.31e-142	vanZ	-	-	V	-	-	-	VanZ like family
BENEMHLD_00793	6.61e-196	glcU	-	-	U	ko:K05340	-	ko00000,ko02000	sugar transport
BENEMHLD_00794	0.0	pgi	5.3.1.9	-	G	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the GPI family
BENEMHLD_00795	6.26e-290	-	-	-	L	-	-	-	Pfam:Integrase_AP2
BENEMHLD_00797	1.18e-229	-	-	-	-	-	-	-	-
BENEMHLD_00798	1.58e-41	-	-	-	-	-	-	-	-
BENEMHLD_00799	5.03e-95	-	-	-	S	-	-	-	Pyridoxamine 5'-phosphate oxidase
BENEMHLD_00803	1.59e-152	-	-	-	S	-	-	-	Domain of Unknown Function with PDB structure (DUF3862)
BENEMHLD_00804	1.02e-100	-	-	-	E	-	-	-	Zn peptidase
BENEMHLD_00805	2.45e-72	-	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_00806	5.54e-50	-	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_00810	3.27e-129	-	-	-	-	-	-	-	-
BENEMHLD_00812	1.03e-22	-	-	-	-	-	-	-	-
BENEMHLD_00815	1.02e-202	-	-	-	L	ko:K07455	-	ko00000,ko03400	RecT family
BENEMHLD_00816	5.2e-172	pi112	-	-	L	-	-	-	PDDEXK-like domain of unknown function (DUF3799)
BENEMHLD_00817	3.13e-206	-	-	-	L	-	-	-	Replication initiation and membrane attachment
BENEMHLD_00818	9.26e-103	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
BENEMHLD_00819	6.14e-09	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
BENEMHLD_00820	5.44e-05	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BENEMHLD_00821	6.72e-97	-	-	-	-	-	-	-	-
BENEMHLD_00822	4.6e-53	-	-	-	-	-	-	-	-
BENEMHLD_00823	1.72e-75	rusA	-	-	L	-	-	-	Endodeoxyribonuclease RusA
BENEMHLD_00824	8.94e-49	-	-	-	-	-	-	-	-
BENEMHLD_00825	1.18e-38	-	-	-	-	-	-	-	-
BENEMHLD_00826	1.65e-122	-	-	-	S	-	-	-	Protein of unknown function (DUF1642)
BENEMHLD_00830	5.83e-84	-	-	-	-	-	-	-	-
BENEMHLD_00833	1.55e-101	-	-	-	-	-	-	-	-
BENEMHLD_00834	3.19e-286	-	-	-	S	-	-	-	GcrA cell cycle regulator
BENEMHLD_00835	5.9e-140	-	-	-	L	-	-	-	NUMOD4 motif
BENEMHLD_00836	2.95e-75	-	-	-	-	-	-	-	-
BENEMHLD_00837	3.96e-114	-	-	-	L	ko:K07474	-	ko00000	Terminase small subunit
BENEMHLD_00838	0.0	-	-	-	S	ko:K06909	-	ko00000	Terminase RNAseH like domain
BENEMHLD_00839	0.0	-	-	-	S	-	-	-	Phage portal protein
BENEMHLD_00840	9.51e-239	-	-	-	S	-	-	-	head morphogenesis protein, SPP1 gp7 family
BENEMHLD_00841	3.77e-139	-	-	-	S	-	-	-	Domain of unknown function (DUF4355)
BENEMHLD_00842	3.31e-238	gpG	-	-	-	-	-	-	-
BENEMHLD_00843	2.25e-83	-	-	-	S	-	-	-	Phage gp6-like head-tail connector protein
BENEMHLD_00844	1.98e-68	-	-	-	-	-	-	-	-
BENEMHLD_00845	2.12e-67	-	-	-	S	-	-	-	Bacteriophage HK97-gp10, putative tail-component
BENEMHLD_00846	6.75e-92	-	-	-	S	-	-	-	Protein of unknown function (DUF3168)
BENEMHLD_00847	9.54e-140	-	-	-	S	-	-	-	Phage tail tube protein
BENEMHLD_00848	3.39e-67	-	-	-	S	-	-	-	Phage tail assembly chaperone protein, TAC
BENEMHLD_00849	2.71e-74	-	-	-	-	-	-	-	-
BENEMHLD_00850	0.0	-	-	-	S	-	-	-	phage tail tape measure protein
BENEMHLD_00851	0.0	-	-	-	S	-	-	-	Phage tail protein
BENEMHLD_00852	0.0	-	-	-	S	-	-	-	cellulase activity
BENEMHLD_00853	1.4e-69	-	-	-	-	-	-	-	-
BENEMHLD_00855	2.09e-63	-	-	-	-	-	-	-	-
BENEMHLD_00856	2.07e-83	hol	-	-	S	-	-	-	Bacteriophage holin
BENEMHLD_00857	9.54e-302	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
BENEMHLD_00858	3.01e-63	ycnE	-	-	S	-	-	-	Antibiotic biosynthesis monooxygenase
BENEMHLD_00859	4.38e-184	-	-	-	F	ko:K15051	-	ko00000	DNA/RNA non-specific endonuclease
BENEMHLD_00860	1.88e-107	-	-	-	S	-	-	-	Pfam Transposase IS66
BENEMHLD_00861	2.76e-294	-	-	GT2,GT4	M	ko:K20444	-	ko00000,ko01000,ko01005,ko02000	Glycosyl transferases group 1
BENEMHLD_00862	1.88e-221	ysjB	-	-	S	ko:K03810	-	ko00000	Oxidoreductase family, NAD-binding Rossmann fold
BENEMHLD_00863	4e-110	guaD	-	-	FJ	-	-	-	MafB19-like deaminase
BENEMHLD_00867	2.13e-274	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
BENEMHLD_00869	1.56e-25	-	-	-	-	-	-	-	-
BENEMHLD_00870	1.53e-126	yttB	-	-	EGP	-	-	-	Major Facilitator
BENEMHLD_00871	3.71e-140	-	-	-	E	-	-	-	Major Facilitator Superfamily
BENEMHLD_00872	0.0	pepD2	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
BENEMHLD_00875	6.59e-171	pgm7	-	-	G	-	-	-	Phosphoglycerate mutase family
BENEMHLD_00876	1.29e-155	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_00877	0.0	ycfI	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_00878	0.0	yfiC	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
BENEMHLD_00879	1.29e-181	-	-	-	S	-	-	-	NADPH-dependent FMN reductase
BENEMHLD_00880	5.78e-212	catE	1.13.11.2	-	S	ko:K07104	ko00361,ko00362,ko00622,ko00643,ko01100,ko01120,ko01220,map00361,map00362,map00622,map00643,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	glyoxalase
BENEMHLD_00881	8.62e-253	ampC	-	-	V	-	-	-	Beta-lactamase
BENEMHLD_00882	0.0	murE2	6.3.2.13	-	M	ko:K01928	ko00300,ko00550,map00300,map00550	ko00000,ko00001,ko01000,ko01011	Domain of unknown function (DUF1727)
BENEMHLD_00883	2.02e-144	tdk	2.7.1.21	-	F	ko:K00857	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	thymidine kinase
BENEMHLD_00884	2.13e-10	relA	2.7.6.5	-	KT	ko:K00951	ko00230,map00230	ko00000,ko00001,ko01000	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BENEMHLD_00885	3.51e-251	prfA	-	-	J	ko:K02835	-	ko00000,ko03012	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BENEMHLD_00886	1.85e-202	prmC	2.1.1.297	-	J	ko:K02493	-	ko00000,ko01000,ko03012	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
BENEMHLD_00887	7.33e-248	ywlC	2.7.7.87	-	J	ko:K07566	-	ko00000,ko01000,ko03009,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine
BENEMHLD_00888	1.29e-297	glyA	2.1.2.1	-	E	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BENEMHLD_00889	1.51e-145	upp	2.4.2.9	-	F	ko:K00761	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BENEMHLD_00890	7.1e-162	atpB	-	-	C	ko:K02108	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko03110	it plays a direct role in the translocation of protons across the membrane
BENEMHLD_00891	3.01e-36	atpE	-	-	C	ko:K02110	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BENEMHLD_00892	3.52e-87	atpF	-	-	C	ko:K02109	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BENEMHLD_00893	1.67e-117	atpH	-	-	C	ko:K02113	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BENEMHLD_00894	0.0	atpA	3.6.3.14	-	C	ko:K02111	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BENEMHLD_00895	1.78e-211	atpG	-	-	C	ko:K02115	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BENEMHLD_00896	3.68e-15	-	-	-	-	-	-	-	-
BENEMHLD_00897	0.0	atpD	3.6.3.14	-	C	ko:K02112	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194,ko01000	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BENEMHLD_00898	6.51e-83	atpC	-	-	C	ko:K02114	ko00190,ko00195,ko01100,map00190,map00195,map01100	ko00000,ko00001,ko00002,ko00194	Produces ATP from ADP in the presence of a proton gradient across the membrane
BENEMHLD_00899	3.55e-43	-	-	-	S	-	-	-	Protein of unknown function (DUF1146)
BENEMHLD_00900	2.13e-230	mbl	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	Cell shape determining protein MreB Mrl
BENEMHLD_00901	5.48e-35	-	-	-	S	-	-	-	DNA-directed RNA polymerase subunit beta
BENEMHLD_00902	1.96e-73	ytjA	-	-	S	ko:K08998	-	ko00000	Could be involved in insertion of integral membrane proteins into the membrane
BENEMHLD_00903	2.92e-42	-	-	-	S	-	-	-	Protein of unknown function (DUF2969)
BENEMHLD_00904	1.92e-283	rodA	-	-	D	ko:K05837	-	ko00000,ko03036	Belongs to the SEDS family
BENEMHLD_00905	1.2e-64	gcsH2	-	-	E	ko:K02437	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	ko00000,ko00001,ko00002	glycine cleavage
BENEMHLD_00906	8.95e-273	-	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
BENEMHLD_00907	3.82e-190	-	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
BENEMHLD_00908	2.13e-192	-	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
BENEMHLD_00909	1.78e-238	metN	-	-	P	ko:K02071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BENEMHLD_00910	5.58e-151	metI	-	-	P	ko:K02072	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BENEMHLD_00911	4.15e-184	sufC	-	-	O	ko:K09013	-	ko00000,ko02000	FeS assembly ATPase SufC
BENEMHLD_00912	3.62e-245	sufD	-	-	O	ko:K07033,ko:K09015	-	ko00000	FeS assembly protein SufD
BENEMHLD_00913	3.32e-289	sufS	2.8.1.7, 4.4.1.16	-	E	ko:K11717	ko00450,ko01100,map00450,map01100	ko00000,ko00001,ko01000	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BENEMHLD_00914	1.42e-102	nifU	-	-	C	ko:K04488	-	ko00000	SUF system FeS assembly protein, NifU family
BENEMHLD_00915	0.0	sufB	-	-	O	ko:K07033,ko:K09014	-	ko00000	assembly protein SufB
BENEMHLD_00916	2.14e-36	-	-	-	-	-	-	-	-
BENEMHLD_00917	4.01e-87	-	-	-	S	-	-	-	Protein of unknown function (DUF1694)
BENEMHLD_00918	1.5e-231	-	-	-	S	-	-	-	Protein of unknown function (DUF2785)
BENEMHLD_00919	2.16e-206	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BENEMHLD_00920	6.47e-110	uspA	-	-	T	-	-	-	universal stress protein
BENEMHLD_00921	1.41e-53	-	-	-	-	-	-	-	-
BENEMHLD_00922	9.18e-305	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
BENEMHLD_00923	0.0	-	6.3.2.2	-	M	ko:K01919	ko00270,ko00480,ko01100,map00270,map00480,map01100	ko00000,ko00001,ko00002,ko01000	Mur ligase middle domain protein
BENEMHLD_00924	1.19e-97	XK27_05190	-	-	S	-	-	-	Protein of unknown function (DUF1694)
BENEMHLD_00925	2.54e-145	yktB	-	-	S	-	-	-	Belongs to the UPF0637 family
BENEMHLD_00926	1.24e-159	sdaAB	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	Serine dehydratase beta chain
BENEMHLD_00927	1.49e-194	sdaAA	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
BENEMHLD_00928	1.82e-161	-	-	-	G	-	-	-	Phosphoglycerate mutase family
BENEMHLD_00929	1.46e-200	mrsA1	1.8.4.11	-	O	ko:K07304	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BENEMHLD_00930	9.61e-218	-	-	-	IQ	-	-	-	NAD dependent epimerase/dehydratase family
BENEMHLD_00931	1.02e-178	pnuC	-	-	H	ko:K03811	-	ko00000,ko02000	nicotinamide mononucleotide transporter
BENEMHLD_00932	6.87e-172	-	-	-	F	-	-	-	deoxynucleoside kinase
BENEMHLD_00933	3.46e-204	hisK	3.1.3.15	-	E	ko:K04486	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Histidinol phosphatase and related hydrolases of the PHP family
BENEMHLD_00934	0.0	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
BENEMHLD_00935	1.2e-206	-	-	-	T	-	-	-	GHKL domain
BENEMHLD_00936	1.24e-156	-	-	-	T	-	-	-	Transcriptional regulatory protein, C terminal
BENEMHLD_00937	3.91e-216	bcrA	-	-	V	ko:K01990,ko:K19309	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	AAA domain, putative AbiEii toxin, Type IV TA system
BENEMHLD_00938	1.12e-168	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
BENEMHLD_00939	1.26e-209	-	-	-	K	-	-	-	Transcriptional regulator
BENEMHLD_00940	1.98e-104	yphH	-	-	S	-	-	-	Cupin domain
BENEMHLD_00941	2.24e-72	-	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Carboxymuconolactone decarboxylase family
BENEMHLD_00942	1.35e-142	-	-	-	K	-	-	-	Psort location Cytoplasmic, score
BENEMHLD_00943	4.58e-213	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_00944	2.4e-112	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_00945	3.57e-200	degV	-	-	S	-	-	-	Uncharacterised protein, DegV family COG1307
BENEMHLD_00946	4.08e-149	-	-	-	-	-	-	-	-
BENEMHLD_00947	1.77e-134	desR	-	-	K	ko:K02479,ko:K07693	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	helix_turn_helix, Lux Regulon
BENEMHLD_00948	2.25e-263	desK	2.7.13.3	-	T	ko:K07778	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
BENEMHLD_00949	1.94e-168	XK27_09830	-	-	V	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 type transporter
BENEMHLD_00950	1.15e-205	yvfR	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_00951	0.0	-	-	-	-	-	-	-	-
BENEMHLD_00952	5.73e-240	-	-	-	-	-	-	-	-
BENEMHLD_00953	0.0	-	-	-	D	-	-	-	Putative exonuclease SbcCD, C subunit
BENEMHLD_00954	6.43e-146	-	-	-	D	-	-	-	Putative exonuclease SbcCD, C subunit
BENEMHLD_00955	1.77e-197	-	-	-	S	-	-	-	Protein of unknown function C-terminus (DUF2399)
BENEMHLD_00957	1.57e-233	-	-	-	-	-	-	-	-
BENEMHLD_00958	0.0	mngB	3.2.1.170	GH38	G	ko:K15524	-	ko00000,ko01000	hydrolase, family 38
BENEMHLD_00959	0.0	-	-	-	S	ko:K09704	-	ko00000	Metal-independent alpha-mannosidase (GH125)
BENEMHLD_00960	5.29e-206	ypbG	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	ROK family
BENEMHLD_00961	0.0	bgl	3.2.1.21, 3.2.1.85, 3.2.1.86	GT1	G	ko:K01220,ko:K01223,ko:K05350	ko00010,ko00052,ko00460,ko00500,ko00940,ko01100,ko01110,map00010,map00052,map00460,map00500,map00940,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BENEMHLD_00962	3.22e-65	ptcB	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_00963	1.84e-65	celC	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIA subunit
BENEMHLD_00965	0.0	-	-	-	G	-	-	-	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_00966	2.83e-145	-	4.1.2.14, 4.1.3.42	-	G	ko:K01625	ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	KDPG and KHG aldolase
BENEMHLD_00967	5.47e-103	-	2.7.1.200	-	GT	ko:K02773	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_00968	1.18e-60	sgcB	2.7.1.200	-	G	ko:K02774	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_00969	2.82e-314	-	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
BENEMHLD_00970	2.53e-287	dgoD	4.2.1.6, 4.2.1.8	-	M	ko:K01684,ko:K08323	ko00040,ko00052,ko01100,ko01120,map00040,map00052,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Mandelate racemase muconate lactonizing enzyme
BENEMHLD_00971	1.77e-130	-	-	-	-	-	-	-	-
BENEMHLD_00972	7.23e-316	-	-	-	U	ko:K18926	-	ko00000,ko00002,ko02000	Major Facilitator Superfamily
BENEMHLD_00973	2.37e-95	-	-	-	K	-	-	-	Transcriptional regulator
BENEMHLD_00974	3.13e-99	-	-	-	-	-	-	-	-
BENEMHLD_00975	2.07e-206	-	-	-	K	-	-	-	LysR substrate binding domain
BENEMHLD_00976	4.17e-314	-	-	-	P	-	-	-	Sodium:sulfate symporter transmembrane region
BENEMHLD_00977	1.32e-132	ubiX	2.5.1.129	-	H	ko:K03186	ko00130,ko00627,ko00940,ko01100,ko01110,ko01120,ko01220,map00130,map00627,map00940,map01100,map01110,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN
BENEMHLD_00978	0.0	yclC	4.1.1.61, 4.1.1.98	-	H	ko:K01612,ko:K03182,ko:K16874	ko00130,ko00365,ko00627,ko01100,ko01110,ko01120,ko01220,map00130,map00365,map00627,map01100,map01110,map01120,map01220	ko00000,ko00001,ko00002,ko01000	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
BENEMHLD_00979	6.12e-191	-	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system mannose/fructose/sorbose family IID component
BENEMHLD_00980	2.19e-181	-	-	-	G	ko:K02795	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sorbose-specific iic component
BENEMHLD_00981	1.58e-208	-	2.7.1.191	-	G	ko:K02793,ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
BENEMHLD_00982	0.0	-	3.2.1.51	GH29	G	ko:K01206	ko00511,map00511	ko00000,ko00001,ko01000,ko04147	Alpha-L-fucosidase
BENEMHLD_00983	2.81e-177	-	-	-	K	-	-	-	UTRA domain
BENEMHLD_00984	0.0	glpK	2.7.1.30	-	F	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BENEMHLD_00985	1e-168	rpl	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
BENEMHLD_00986	6.04e-220	fruK-1	2.7.1.56	-	H	ko:K00882	ko00051,map00051	ko00000,ko00001,ko01000	pfkB family carbohydrate kinase
BENEMHLD_00987	0.0	fruC	2.7.1.202	-	GT	ko:K02769,ko:K02770	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_00991	6.36e-117	-	-	-	-	-	-	-	-
BENEMHLD_00992	4.38e-150	ydfK	-	-	S	ko:K07150	-	ko00000	Protein of unknown function (DUF554)
BENEMHLD_00993	3.1e-254	recA	-	-	L	ko:K03553	ko03440,map03440	ko00000,ko00001,ko00002,ko03400	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BENEMHLD_00994	5.18e-75	-	-	-	-	-	-	-	-
BENEMHLD_00995	1.34e-62	-	-	-	-	-	-	-	-
BENEMHLD_00997	7.67e-294	-	-	-	EK	-	-	-	Aminotransferase, class I
BENEMHLD_00998	2.17e-213	-	-	-	K	-	-	-	LysR substrate binding domain
BENEMHLD_00999	1.38e-117	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BENEMHLD_01000	2.42e-195	yitU	3.1.3.104	-	S	ko:K21064	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	hydrolase
BENEMHLD_01001	3.55e-163	gpmB	-	-	G	ko:K15640	-	ko00000	Phosphoglycerate mutase family
BENEMHLD_01002	8.99e-157	-	-	-	S	-	-	-	Protein of unknown function (DUF1275)
BENEMHLD_01003	1.71e-17	-	-	-	-	-	-	-	-
BENEMHLD_01004	3.33e-78	-	-	-	-	-	-	-	-
BENEMHLD_01005	9.32e-184	-	-	-	S	-	-	-	hydrolase
BENEMHLD_01006	1.12e-246	yghZ	-	-	C	ko:K19265	-	ko00000,ko01000	Aldo keto reductase family protein
BENEMHLD_01007	0.0	uvrA3	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	excinuclease ABC
BENEMHLD_01008	4.69e-94	-	-	-	K	-	-	-	MarR family
BENEMHLD_01009	1.82e-144	yagB	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
BENEMHLD_01010	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
BENEMHLD_01012	3.81e-142	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
BENEMHLD_01013	1.19e-167	ydfF	-	-	K	-	-	-	Transcriptional
BENEMHLD_01014	2.2e-173	cylA	-	-	V	ko:K01990,ko:K09695,ko:K11050	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_01015	8e-177	yadH	-	-	V	ko:K01992,ko:K09694	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC-2 type transporter
BENEMHLD_01016	4.47e-229	ydiA	-	-	P	ko:K11041	ko05150,map05150	ko00000,ko00001,ko02042	Voltage-dependent anion channel
BENEMHLD_01017	2.51e-195	rlrG	-	-	K	ko:K21900	-	ko00000,ko03000	Transcriptional regulator
BENEMHLD_01018	0.0	-	-	-	L	-	-	-	DNA helicase
BENEMHLD_01020	0.0	choS	-	-	EM	ko:K05845,ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Periplasmic glycine betaine choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)
BENEMHLD_01021	1.09e-227	proV	-	-	E	ko:K05847	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_01022	0.0	gshR	1.8.1.7	-	C	ko:K00383	ko00480,ko04918,map00480,map04918	ko00000,ko00001,ko01000	Glutathione reductase
BENEMHLD_01024	6.36e-153	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_01026	7.3e-32	-	-	-	-	-	-	-	-
BENEMHLD_01027	1.19e-104	-	-	-	-	-	-	-	-
BENEMHLD_01028	6.02e-246	trpS	6.1.1.2	-	J	ko:K01867	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
BENEMHLD_01029	5.07e-134	lemA	-	-	S	ko:K03744	-	ko00000	LemA family
BENEMHLD_01030	1.36e-142	-	-	-	S	ko:K06872	-	ko00000	TPM domain
BENEMHLD_01032	5.55e-304	dinF	-	-	V	-	-	-	MatE
BENEMHLD_01033	6.79e-120	ywnH	2.3.1.183	-	M	ko:K03823	ko00440,ko01130,map00440,map01130	ko00000,ko00001,ko01000	Acetyltransferase (GNAT) domain
BENEMHLD_01034	5.3e-201	-	-	-	Q	-	-	-	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
BENEMHLD_01035	1.01e-223	ydhF	-	-	S	-	-	-	Aldo keto reductase
BENEMHLD_01036	0.0	ppx3	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
BENEMHLD_01037	0.0	ppk	2.7.4.1	-	P	ko:K00937	ko00190,ko03018,map00190,map03018	ko00000,ko00001,ko01000,ko03019	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BENEMHLD_01038	1e-220	ppx	3.6.1.11, 3.6.1.40	-	FP	ko:K01524	ko00230,map00230	ko00000,ko00001,ko01000	exopolyphosphatase
BENEMHLD_01039	3.46e-219	ypuA	-	-	S	-	-	-	Protein of unknown function (DUF1002)
BENEMHLD_01040	9.28e-52	-	-	-	-	-	-	-	-
BENEMHLD_01041	6.73e-127	yxkA	-	-	S	ko:K06910	-	ko00000	Phosphatidylethanolamine-binding protein
BENEMHLD_01042	1.37e-220	-	-	-	-	-	-	-	-
BENEMHLD_01043	7.77e-25	-	-	-	-	-	-	-	-
BENEMHLD_01044	1.19e-166	cobB	-	-	K	ko:K12410	-	ko00000,ko01000	Sir2 family
BENEMHLD_01045	5.76e-140	yiiE	-	-	S	-	-	-	Protein of unknown function (DUF1211)
BENEMHLD_01046	1.8e-217	-	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily
BENEMHLD_01047	1.09e-118	-	3.6.1.55	-	F	ko:K03574	-	ko00000,ko01000,ko03400	NUDIX domain
BENEMHLD_01048	2.52e-197	yunF	-	-	F	-	-	-	Protein of unknown function DUF72
BENEMHLD_01050	1.15e-222	pepI	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
BENEMHLD_01051	0.0	metG	6.1.1.10	-	J	ko:K01874	ko00450,ko00970,map00450,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BENEMHLD_01052	2.62e-89	-	-	-	-	-	-	-	-
BENEMHLD_01053	9.64e-42	-	-	-	K	ko:K07729	-	ko00000,ko03000	Transcriptional
BENEMHLD_01054	0.0	-	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
BENEMHLD_01055	0.0	-	-	-	V	ko:K06147	-	ko00000,ko02000	ABC transporter
BENEMHLD_01056	1.22e-216	-	-	-	T	-	-	-	GHKL domain
BENEMHLD_01057	1.05e-162	-	-	-	T	ko:K07705	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	LytTr DNA-binding domain
BENEMHLD_01058	5.19e-222	yqhA	-	-	G	-	-	-	Aldose 1-epimerase
BENEMHLD_01059	7.82e-239	lacD	4.1.2.40	-	G	ko:K01635	ko00052,ko01100,ko02024,map00052,map01100,map02024	ko00000,ko00001,ko01000	Belongs to the aldolase LacD family
BENEMHLD_01060	9.15e-105	manR	2.7.1.194, 2.7.1.200, 2.7.1.202	-	G	ko:K02538,ko:K02768,ko:K02769,ko:K02770,ko:K02773,ko:K02806,ko:K02821,ko:K03491	ko00051,ko00052,ko00053,ko01100,ko01120,ko02060,map00051,map00052,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000,ko03000	phosphoenolpyruvate-dependent sugar phosphotransferase system
BENEMHLD_01061	6.41e-190	tatD	-	-	L	ko:K03424	-	ko00000,ko01000	hydrolase, TatD family
BENEMHLD_01062	2.76e-129	rnmV	3.1.26.8	-	J	ko:K05985	-	ko00000,ko01000	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
BENEMHLD_01063	1.06e-201	ksgA	2.1.1.182	-	J	ko:K02528	-	ko00000,ko01000,ko03009	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
BENEMHLD_01064	4.13e-51	veg	-	-	S	-	-	-	Biofilm formation stimulator VEG
BENEMHLD_01065	4.56e-211	ispE	2.7.1.148	-	F	ko:K00919,ko:K16924	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko02000	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BENEMHLD_01066	6.67e-204	czcD	-	-	P	ko:K16264	-	ko00000,ko02000	cation diffusion facilitator family transporter
BENEMHLD_01067	2.5e-159	ybbM	-	-	S	ko:K02069	-	ko00000,ko00002,ko02000	Uncharacterised protein family (UPF0014)
BENEMHLD_01068	1.84e-154	ybbL	-	-	S	ko:K02068	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_01069	1.01e-193	purR	-	-	F	ko:K09685	-	ko00000,ko03000	pur operon repressor
BENEMHLD_01070	2.34e-284	ysaA	-	-	V	-	-	-	RDD family
BENEMHLD_01071	2.22e-297	glmU	2.3.1.157, 2.7.7.23	-	M	ko:K04042	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BENEMHLD_01072	2.2e-225	prs	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BENEMHLD_01073	1.39e-70	nudA	-	-	S	-	-	-	ASCH
BENEMHLD_01074	1.66e-100	-	-	-	-	-	-	-	-
BENEMHLD_01075	1.4e-78	mscL	-	-	M	ko:K03282	-	ko00000,ko02000	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
BENEMHLD_01076	7.8e-240	-	-	-	S	-	-	-	DUF218 domain
BENEMHLD_01077	1.53e-107	mutT	3.6.1.55	-	L	ko:K03574	-	ko00000,ko01000,ko03400	NUDIX domain
BENEMHLD_01078	0.0	ywfO	-	-	S	ko:K06885	-	ko00000	HD domain protein
BENEMHLD_01079	2.07e-202	lipL	2.3.1.200, 2.3.1.204	-	H	ko:K16869,ko:K18821	-	ko00000,ko01000	biotin lipoate A B protein ligase
BENEMHLD_01080	1.21e-103	ywiB	-	-	S	-	-	-	Domain of unknown function (DUF1934)
BENEMHLD_01081	2.69e-103	rpoE	-	-	K	ko:K03048	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko03021,ko03400	Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
BENEMHLD_01082	1.28e-196	ybbB	-	-	S	-	-	-	Protein of unknown function (DUF1211)
BENEMHLD_01085	4.02e-282	yumB	1.6.99.3	-	C	ko:K03885	ko00190,map00190	ko00000,ko00001,ko01000	NADH dehydrogenase
BENEMHLD_01086	0.0	pyrG	6.3.4.2	-	F	ko:K01937	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
BENEMHLD_01087	3.31e-300	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BENEMHLD_01088	3.24e-57	rpmE2	-	-	J	ko:K02909	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L31
BENEMHLD_01089	1.62e-96	-	-	-	-	-	-	-	-
BENEMHLD_01090	1.9e-160	-	-	-	-	-	-	-	-
BENEMHLD_01091	2.34e-160	-	-	-	S	-	-	-	Tetratricopeptide repeat
BENEMHLD_01092	1.07e-190	-	-	-	-	-	-	-	-
BENEMHLD_01093	0.0	murF	6.3.2.10	-	M	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
BENEMHLD_01094	0.0	cshA	3.6.4.13	-	F	ko:K05592	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA- dependent ATPase activity
BENEMHLD_01095	2.25e-83	acpS	2.7.8.7	-	I	ko:K00997	ko00770,map00770	ko00000,ko00001,ko01000	Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
BENEMHLD_01096	1.5e-278	alr	5.1.1.1	-	E	ko:K01775	ko00473,ko01100,ko01502,map00473,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BENEMHLD_01097	5.46e-51	-	-	-	-	-	-	-	-
BENEMHLD_01098	2.32e-82	ndoA	-	-	L	ko:K07171	-	ko00000,ko01000,ko02048	Toxic component of a toxin-antitoxin (TA) module
BENEMHLD_01100	5.65e-113	queT	-	-	S	-	-	-	QueT transporter
BENEMHLD_01101	0.0	gltA	1.4.1.13, 1.4.1.14, 1.4.7.1	-	E	ko:K00265,ko:K00284	ko00250,ko00630,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00630,map00910,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko01000	GXGXG motif
BENEMHLD_01102	0.0	gltD	1.4.1.13, 1.4.1.14	-	E	ko:K00266	ko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko01000	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
BENEMHLD_01103	2.06e-168	yciB	-	-	M	-	-	-	ErfK YbiS YcfS YnhG
BENEMHLD_01104	1.9e-154	-	-	-	S	-	-	-	(CBS) domain
BENEMHLD_01105	4.08e-149	-	-	-	S	-	-	-	Flavodoxin-like fold
BENEMHLD_01106	0.0	-	-	-	S	ko:K01421	-	ko00000	ABC-2 family transporter protein
BENEMHLD_01107	6.37e-125	padR	-	-	K	-	-	-	Transcriptional regulator PadR-like family
BENEMHLD_01108	0.0	-	-	-	S	-	-	-	Putative peptidoglycan binding domain
BENEMHLD_01109	1.02e-231	ldh	1.1.1.27	-	C	ko:K00016	ko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922	ko00000,ko00001,ko01000,ko04147	Belongs to the LDH MDH superfamily. LDH family
BENEMHLD_01110	1.05e-131	pth	3.1.1.29	-	J	ko:K01056	-	ko00000,ko01000,ko03012	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
BENEMHLD_01111	0.0	mfd	-	-	L	ko:K03723	ko03420,map03420	ko00000,ko00001,ko01000,ko03400	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BENEMHLD_01112	0.0	yabM	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
BENEMHLD_01113	2.33e-52	yabO	-	-	J	-	-	-	S4 domain protein
BENEMHLD_01114	1.87e-84	divIC	-	-	D	ko:K05589,ko:K13052	-	ko00000,ko03036	cell cycle
BENEMHLD_01115	6.08e-107	yabR	-	-	J	ko:K07571	-	ko00000	RNA binding
BENEMHLD_01116	5.45e-314	tilS	2.4.2.8, 6.3.4.19	-	J	ko:K04075,ko:K15780	ko00230,ko01100,ko01110,map00230,map01100,map01110	ko00000,ko00001,ko01000,ko03016	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
BENEMHLD_01117	2.04e-125	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
BENEMHLD_01118	0.0	ftsH	-	-	O	ko:K03798	-	ko00000,ko00002,ko01000,ko01002,ko03110	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BENEMHLD_01119	5.97e-208	hslO	-	-	O	ko:K04083	-	ko00000,ko03110	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BENEMHLD_01120	1.12e-243	dus	-	-	J	ko:K05540	-	ko00000,ko01000,ko03016	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BENEMHLD_01121	0.0	lysS	6.1.1.6	-	J	ko:K04567	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family
BENEMHLD_01122	5.71e-48	rfbA	2.7.7.24	-	H	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BENEMHLD_01123	1.34e-161	rfbP	-	-	M	-	-	-	Bacterial sugar transferase
BENEMHLD_01124	3.51e-273	-	-	-	M	-	-	-	PFAM Glycosyl transferases group 1
BENEMHLD_01125	4.11e-239	-	-	-	M	-	-	-	transferase activity, transferring glycosyl groups
BENEMHLD_01126	1.94e-217	-	-	GT2	M	ko:K12997	-	ko00000,ko01000,ko01003,ko01005	Glycosyl transferase family 2
BENEMHLD_01127	1e-271	-	-	-	M	-	-	-	Glycosyl transferases group 1
BENEMHLD_01128	1.46e-198	cps3J	-	-	M	-	-	-	Domain of unknown function (DUF4422)
BENEMHLD_01129	0.0	cps1C	-	-	S	ko:K03328	-	ko00000	Membrane protein involved in the export of O-antigen and teichoic acid
BENEMHLD_01130	1.5e-279	glf	5.4.99.9	-	M	ko:K01854	ko00052,ko00520,map00052,map00520	ko00000,ko00001,ko01000	UDP-galactopyranose mutase
BENEMHLD_01131	6.92e-280	-	-	-	-	-	-	-	-
BENEMHLD_01132	1.04e-164	ywqD	-	-	D	-	-	-	Capsular exopolysaccharide family
BENEMHLD_01133	4.33e-207	epsB	-	-	M	-	-	-	biosynthesis protein
BENEMHLD_01134	2.59e-171	-	-	-	E	-	-	-	lipolytic protein G-D-S-L family
BENEMHLD_01135	2.39e-226	-	-	-	K	-	-	-	Protein of unknown function (DUF4065)
BENEMHLD_01136	1.02e-66	-	-	-	S	-	-	-	Motility quorum-sensing regulator, toxin of MqsA
BENEMHLD_01137	5.97e-106	ccl	-	-	S	-	-	-	QueT transporter
BENEMHLD_01138	4.82e-165	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl-(Acyl carrier protein) reductase
BENEMHLD_01139	2.98e-49	XK27_01315	-	-	S	-	-	-	Protein of unknown function (DUF2829)
BENEMHLD_01140	3.39e-64	-	-	-	K	-	-	-	Cro/C1-type HTH DNA-binding domain
BENEMHLD_01141	5.28e-152	gpm5	-	-	G	-	-	-	Phosphoglycerate mutase family
BENEMHLD_01142	7.74e-232	oppF	-	-	P	ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
BENEMHLD_01143	2.89e-250	oppD	-	-	P	ko:K02031,ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
BENEMHLD_01144	1.17e-224	oppC	-	-	EP	ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BENEMHLD_01145	1.99e-208	oppB	-	-	P	ko:K15581	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BENEMHLD_01146	0.0	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
BENEMHLD_01147	0.0	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
BENEMHLD_01148	7.08e-131	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BENEMHLD_01149	1.4e-172	lutC	-	-	S	ko:K00782	-	ko00000	LUD domain
BENEMHLD_01150	0.0	lutB	-	-	C	ko:K18929	-	ko00000	4Fe-4S dicluster domain
BENEMHLD_01151	2.94e-191	lutA	-	-	C	ko:K18928	-	ko00000	Cysteine-rich domain
BENEMHLD_01152	7.96e-133	-	-	-	-	-	-	-	-
BENEMHLD_01153	6.5e-71	-	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIA subunit
BENEMHLD_01154	5.58e-272	ybhE	-	-	S	ko:K09963	-	ko00000	Bacterial protein of unknown function (DUF871)
BENEMHLD_01155	1.92e-92	-	-	-	S	-	-	-	Domain of unknown function (DUF3284)
BENEMHLD_01156	0.0	chbC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BENEMHLD_01157	0.0	galA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
BENEMHLD_01158	4.85e-179	XK27_08125	-	-	S	ko:K09861	-	ko00000	Belongs to the UPF0246 family
BENEMHLD_01159	1.9e-176	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2087)
BENEMHLD_01160	0.0	-	3.1.11.5	-	L	ko:K03581	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Helix-hairpin-helix containing domain
BENEMHLD_01161	1.79e-144	-	-	-	-	-	-	-	-
BENEMHLD_01162	9.73e-131	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
BENEMHLD_01163	2.91e-187	frlD1	2.7.1.218	-	G	ko:K10710	-	ko00000,ko01000	pfkB family carbohydrate kinase
BENEMHLD_01164	0.0	-	-	-	G	-	-	-	Phosphodiester glycosidase
BENEMHLD_01166	0.0	hyuA	-	-	EQ	-	-	-	Hydantoinase/oxoprolinase N-terminal region
BENEMHLD_01167	2.43e-264	-	-	-	S	ko:K09703	-	ko00000	Protein of unknown function (DUF917)
BENEMHLD_01168	3.59e-285	-	-	-	F	ko:K10974	-	ko00000,ko02000	Permease for cytosine/purines, uracil, thiamine, allantoin
BENEMHLD_01169	8.04e-168	-	-	-	-	-	-	-	-
BENEMHLD_01170	0.0	-	-	-	S	-	-	-	Protein of unknown function (DUF1524)
BENEMHLD_01171	0.0	-	3.4.21.53	-	O	ko:K01338	ko04112,map04112	ko00000,ko00001,ko01000,ko01002	Putative ATP-dependent Lon protease
BENEMHLD_01172	0.0	-	-	-	S	-	-	-	PglZ domain
BENEMHLD_01173	0.0	-	-	-	V	-	-	-	Eco57I restriction-modification methylase
BENEMHLD_01174	8.7e-257	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
BENEMHLD_01175	0.0	-	-	-	V	-	-	-	Eco57I restriction-modification methylase
BENEMHLD_01176	0.0	-	-	-	K	-	-	-	RNA-binding protein homologous to eukaryotic snRNP
BENEMHLD_01177	8.22e-138	-	-	-	S	-	-	-	Domain of unknown function (DUF1788)
BENEMHLD_01178	1.16e-135	-	-	-	S	-	-	-	Putative inner membrane protein (DUF1819)
BENEMHLD_01179	1.42e-270	-	-	-	-	-	-	-	-
BENEMHLD_01180	0.0	pip	-	-	V	ko:K01421	-	ko00000	domain protein
BENEMHLD_01181	6.19e-314	pts26BCA	2.7.1.211	-	G	ko:K02808,ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BENEMHLD_01182	1.2e-132	pts26BCA	2.7.1.211	-	G	ko:K02808,ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BENEMHLD_01183	0.0	malL	3.2.1.20	GH31	G	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
BENEMHLD_01184	2.14e-232	purR2	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding proteins and sugar binding domain of LacI family
BENEMHLD_01185	0.0	scrB	3.2.1.26	GH32	G	ko:K01193	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	invertase
BENEMHLD_01187	1.41e-208	-	-	-	GM	-	-	-	NmrA-like family
BENEMHLD_01188	8.32e-299	cfa	2.1.1.79	-	M	ko:K00574	-	ko00000,ko01000	cyclopropane-fatty-acyl-phospholipid synthase
BENEMHLD_01189	2.5e-186	accA	2.1.3.15, 6.4.1.2	-	I	ko:K01962	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	alpha subunit
BENEMHLD_01190	2.72e-197	accD	2.1.3.15, 6.4.1.2	-	I	ko:K01963	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BENEMHLD_01191	0.0	accC	6.3.4.14, 6.4.1.2	-	I	ko:K01961	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002,ko01000	Acetyl-CoA carboxylase biotin carboxylase subunit
BENEMHLD_01192	4.77e-100	fabZ	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
BENEMHLD_01193	9.15e-90	accB	-	-	I	ko:K02160	ko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212	ko00000,ko00001,ko00002	first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
BENEMHLD_01194	2.96e-285	fabF	2.3.1.179	-	I	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
BENEMHLD_01195	2.03e-164	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	reductase
BENEMHLD_01196	1.25e-211	fabD	2.3.1.39	-	I	ko:K00645,ko:K15327,ko:K15329	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004,ko01008	Malonyl CoA-acyl carrier protein transacylase
BENEMHLD_01197	3.91e-220	fabK	1.3.1.9	-	S	ko:K02371	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Nitronate monooxygenase
BENEMHLD_01198	5.61e-45	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BENEMHLD_01199	3.01e-225	fabH	2.3.1.180	-	I	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BENEMHLD_01200	4.21e-100	-	-	-	K	-	-	-	Winged helix DNA-binding domain
BENEMHLD_01201	7.93e-94	-	4.2.1.59	-	I	ko:K02372	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	FabA-like domain
BENEMHLD_01202	7.3e-246	-	-	-	I	-	-	-	carboxylic ester hydrolase activity
BENEMHLD_01203	7.34e-291	-	-	-	C	-	-	-	Iron-containing alcohol dehydrogenase
BENEMHLD_01204	1.88e-83	-	-	-	P	-	-	-	Rhodanese-like domain
BENEMHLD_01205	2.45e-109	-	-	-	K	-	-	-	helix_turn_helix multiple antibiotic resistance protein
BENEMHLD_01206	9.17e-37	-	-	-	-	-	-	-	-
BENEMHLD_01207	8.12e-90	-	-	-	K	ko:K18909	-	ko00000,ko00002,ko01504,ko03000	MarR family
BENEMHLD_01208	3.25e-13	tcaA	-	-	S	ko:K21463	-	ko00000	response to antibiotic
BENEMHLD_01209	8.41e-236	-	-	-	S	-	-	-	Putative esterase
BENEMHLD_01210	9.23e-241	-	-	-	-	-	-	-	-
BENEMHLD_01211	5.56e-136	-	-	-	K	-	-	-	Transcriptional regulator, MarR family
BENEMHLD_01212	7.19e-113	-	-	-	F	-	-	-	NUDIX domain
BENEMHLD_01213	1.15e-168	gpmA	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BENEMHLD_01214	1.39e-40	-	-	-	-	-	-	-	-
BENEMHLD_01215	4.05e-201	-	-	-	S	-	-	-	zinc-ribbon domain
BENEMHLD_01216	5.46e-258	pbpX	-	-	V	-	-	-	Beta-lactamase
BENEMHLD_01217	1.77e-239	ydbI	-	-	K	-	-	-	AI-2E family transporter
BENEMHLD_01218	2.05e-164	srtA	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	Sortase family
BENEMHLD_01219	3.45e-86	gtcA2	-	-	S	-	-	-	Teichoic acid glycosylation protein
BENEMHLD_01220	0.0	-	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
BENEMHLD_01221	3.5e-219	gbuC	-	-	E	ko:K02001,ko:K02002	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	glycine betaine
BENEMHLD_01222	1.23e-190	gbuB	-	-	E	ko:K02001	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	glycine betaine
BENEMHLD_01223	1.85e-284	gbuA	3.6.3.32	-	E	ko:K02000	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	glycine betaine
BENEMHLD_01224	9.41e-175	sfsA	-	-	S	ko:K06206	-	ko00000	Belongs to the SfsA family
BENEMHLD_01225	1.5e-95	usp1	-	-	T	-	-	-	Universal stress protein family
BENEMHLD_01226	0.0	yxbA	6.3.1.12	-	S	ko:K17810	-	ko00000,ko01000	ATP-grasp enzyme
BENEMHLD_01227	8.12e-205	thrB	2.7.1.39	-	F	ko:K00872	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
BENEMHLD_01228	0.0	thrC	4.2.3.1	-	E	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Threonine synthase
BENEMHLD_01229	5.83e-293	hom	1.1.1.3	-	E	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	homoserine dehydrogenase
BENEMHLD_01230	0.0	-	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
BENEMHLD_01231	4.25e-287	floL	-	-	S	ko:K07192	ko04910,map04910	ko00000,ko00001,ko03036,ko04131,ko04147	SPFH domain / Band 7 family
BENEMHLD_01232	1.15e-89	-	-	-	-	-	-	-	-
BENEMHLD_01233	7.76e-130	pfoSR	-	-	S	ko:K07035	-	ko00000	Phosphotransferase system, EIIC
BENEMHLD_01234	0.000402	-	-	-	V	ko:K01992	-	ko00000,ko00002,ko02000	Transport permease protein
BENEMHLD_01235	1.47e-212	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_01236	2.48e-252	-	-	-	P	ko:K03320	-	ko00000,ko02000	Ammonium Transporter Family
BENEMHLD_01237	3.65e-274	-	-	-	P	-	-	-	Pyridine nucleotide-disulphide oxidoreductase
BENEMHLD_01238	1.6e-204	p40	-	-	D	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	CHAP domain
BENEMHLD_01239	0.0	ylbB	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
BENEMHLD_01240	3.54e-165	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_01241	3.25e-125	-	-	-	K	-	-	-	transcriptional regulator
BENEMHLD_01242	8.78e-197	-	-	-	G	-	-	-	Sucrose-6F-phosphate phosphohydrolase
BENEMHLD_01243	1.7e-62	-	-	-	-	-	-	-	-
BENEMHLD_01244	1.58e-164	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
BENEMHLD_01245	8.48e-134	-	-	-	S	-	-	-	Protein of unknown function (DUF1211)
BENEMHLD_01246	9.22e-147	lacA	2.3.1.18, 2.3.1.79	-	S	ko:K00633,ko:K00661	-	ko00000,ko01000	Maltose acetyltransferase
BENEMHLD_01247	1.54e-73	-	-	-	-	-	-	-	-
BENEMHLD_01248	0.0	pepD	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
BENEMHLD_01249	1.45e-143	-	-	-	S	-	-	-	Membrane
BENEMHLD_01250	5.63e-114	-	-	-	-	-	-	-	-
BENEMHLD_01251	4.41e-67	-	-	-	-	-	-	-	-
BENEMHLD_01253	2.7e-232	-	-	-	M	-	-	-	Peptidoglycan-binding domain 1 protein
BENEMHLD_01254	5.05e-66	-	-	-	-	-	-	-	-
BENEMHLD_01255	0.0	ybfG	-	-	M	-	-	-	peptidoglycan-binding domain-containing protein
BENEMHLD_01256	1.13e-158	azlC	-	-	E	-	-	-	branched-chain amino acid
BENEMHLD_01257	1.29e-66	azlD	-	-	S	-	-	-	Branched-chain amino acid transport protein (AzlD)
BENEMHLD_01258	0.0	-	3.2.1.31	-	G	ko:K01195	ko00040,ko00531,ko00860,ko00944,ko00983,ko01100,ko01110,ko04142,map00040,map00531,map00860,map00944,map00983,map01100,map01110,map04142	ko00000,ko00001,ko00002,ko01000	Belongs to the glycosyl hydrolase 2 family
BENEMHLD_01259	0.0	-	-	-	M	-	-	-	Glycosyl hydrolase family 59
BENEMHLD_01261	5.06e-152	eda	4.1.2.14, 4.1.3.42	-	G	ko:K01625	ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	KDPG and KHG aldolase
BENEMHLD_01262	3.83e-230	kdgK	2.7.1.45	-	G	ko:K00874	ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	pfkB family carbohydrate kinase
BENEMHLD_01263	7.4e-215	uxaC	5.3.1.12	-	G	ko:K01812	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko00002,ko01000	glucuronate isomerase
BENEMHLD_01264	3.71e-137	uxaC	5.3.1.12	-	G	ko:K01812	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko00002,ko01000	glucuronate isomerase
BENEMHLD_01265	6.06e-278	uxuA	4.2.1.8	-	G	ko:K01686	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the dehydration of D-mannonate
BENEMHLD_01266	0.0	uxuB	1.1.1.57	-	G	ko:K00040	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko00002,ko01000	Mannitol dehydrogenase C-terminal domain
BENEMHLD_01267	2.3e-293	-	-	-	G	-	-	-	Major Facilitator
BENEMHLD_01268	1.34e-163	kdgR	-	-	K	-	-	-	FCD domain
BENEMHLD_01269	1.44e-245	kdgK	2.7.1.45	-	G	ko:K00874	ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	pfkB family carbohydrate kinase
BENEMHLD_01270	0.0	-	-	-	M	-	-	-	Glycosyl hydrolase family 59
BENEMHLD_01271	3.4e-78	ps105	-	-	-	-	-	-	-
BENEMHLD_01272	1.31e-85	-	-	-	S	-	-	-	pyridoxamine 5-phosphate
BENEMHLD_01273	1.98e-313	-	-	-	EGP	-	-	-	Major Facilitator
BENEMHLD_01274	6.91e-280	-	3.1.1.83	-	I	ko:K14731	ko00903,ko00930,ko01220,map00903,map00930,map01220	ko00000,ko00001,ko01000	Alpha beta hydrolase
BENEMHLD_01275	3.96e-155	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_01277	0.0	ydgH	-	-	S	ko:K06994	-	ko00000	MMPL family
BENEMHLD_01278	4.54e-138	-	-	-	K	ko:K22106	-	ko00000,ko03000	Tetracycline repressor, C-terminal all-alpha domain
BENEMHLD_01279	5.55e-157	-	-	-	S	ko:K07090	-	ko00000	Sulfite exporter TauE/SafE
BENEMHLD_01280	0.0	-	3.5.4.28, 3.5.4.31	-	F	ko:K12960	ko00270,ko01100,map00270,map01100	ko00000,ko00001,ko01000	Amidohydrolase family
BENEMHLD_01281	4.53e-90	-	-	-	S	-	-	-	An automated process has identified a potential problem with this gene model
BENEMHLD_01282	5.87e-192	-	-	-	S	-	-	-	Protein of unknown function (DUF3100)
BENEMHLD_01284	1.37e-142	opuCD	-	-	P	ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BENEMHLD_01285	3.39e-226	opuCC	-	-	M	ko:K05845	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Periplasmic glycine betaine choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)
BENEMHLD_01286	2.13e-136	opuCB	-	-	E	ko:K05846	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BENEMHLD_01287	7.45e-279	opuCA	-	-	E	ko:K05847	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_01288	5.26e-70	-	-	-	S	-	-	-	Protein of unknown function (DUF2568)
BENEMHLD_01289	3.6e-92	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
BENEMHLD_01291	0.0	cadA	3.6.3.3, 3.6.3.5	-	P	ko:K01534	-	ko00000,ko01000	P-type ATPase
BENEMHLD_01292	7.29e-46	copZ	-	-	P	-	-	-	Heavy-metal-associated domain
BENEMHLD_01293	2.65e-133	dpsB	-	-	P	-	-	-	Belongs to the Dps family
BENEMHLD_01294	4.48e-152	flp	-	-	K	ko:K21562	-	ko00000,ko03000	helix_turn_helix, cAMP Regulatory protein
BENEMHLD_01295	5.03e-128	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_01296	4.02e-116	-	-	-	S	-	-	-	Protein of unknown function with HXXEE motif
BENEMHLD_01298	5.29e-206	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
BENEMHLD_01299	6.93e-261	-	2.7.1.191, 2.7.1.202	-	G	ko:K02769,ko:K02770,ko:K02794,ko:K02795	ko00051,ko00520,ko01100,ko01120,ko02060,map00051,map00520,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BENEMHLD_01300	3.45e-64	-	2.7.1.191, 2.7.1.202	-	G	ko:K02769,ko:K02770,ko:K02794,ko:K02795	ko00051,ko00520,ko01100,ko01120,ko02060,map00051,map00520,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BENEMHLD_01301	2.07e-106	frvA	2.7.1.202	-	G	ko:K02768	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_01302	0.0	mngB	3.2.1.170	GH38	G	ko:K15524	-	ko00000,ko01000	Glycosyl hydrolases family 38 N-terminal domain
BENEMHLD_01303	1.05e-181	-	-	-	K	-	-	-	SIS domain
BENEMHLD_01304	0.0	-	3.2.1.21, 3.2.1.85, 3.2.1.86	GT1	G	ko:K01220,ko:K01223,ko:K05350	ko00010,ko00052,ko00460,ko00500,ko00940,ko01100,ko01110,map00010,map00052,map00460,map00500,map00940,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BENEMHLD_01305	3.33e-208	bglK_1	-	-	GK	-	-	-	ROK family
BENEMHLD_01307	3.66e-185	trpA	4.2.1.20	-	E	ko:K01695	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
BENEMHLD_01308	1.67e-291	trpB	4.2.1.20, 5.3.1.24	-	E	ko:K01696,ko:K01817	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
BENEMHLD_01309	2.53e-139	trpF	5.3.1.24	-	E	ko:K01817	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TrpF family
BENEMHLD_01310	1.37e-175	trpC	4.1.1.48, 5.3.1.24	-	E	ko:K01609,ko:K13498	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TrpC family
BENEMHLD_01311	4.15e-234	trpD	2.4.2.18, 4.1.3.27	-	F	ko:K00766,ko:K13497	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BENEMHLD_01312	0.0	-	-	-	EGP	-	-	-	Major Facilitator
BENEMHLD_01313	9.98e-146	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_01314	1.67e-159	-	-	-	-	-	-	-	-
BENEMHLD_01316	1.93e-137	-	5.1.3.13	-	M	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	dTDP-4-dehydrorhamnose 3,5-epimerase
BENEMHLD_01317	3.28e-181	dapB	1.17.1.8	-	E	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
BENEMHLD_01318	8.2e-214	dapA	4.3.3.7	-	E	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BENEMHLD_01319	2.73e-285	hipO	3.5.1.47	-	E	ko:K05823	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate
BENEMHLD_01320	1.79e-115	dapH	2.3.1.117, 2.3.1.89	-	E	ko:K00674,ko:K05822	ko00300,ko01100,ko01110,ko01120,ko01230,map00300,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of an acetyl group from acetyl- CoA to tetrahydrodipicolinate
BENEMHLD_01321	0.0	lysA	4.1.1.20	-	E	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
BENEMHLD_01322	0.0	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
BENEMHLD_01323	3.6e-241	dapF	5.1.1.7	-	E	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BENEMHLD_01324	3.52e-252	asd	1.2.1.11	-	E	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BENEMHLD_01325	8.46e-84	-	-	-	-	-	-	-	-
BENEMHLD_01326	8.49e-66	-	-	-	K	-	-	-	sequence-specific DNA binding
BENEMHLD_01327	1.64e-98	-	-	-	L	-	-	-	NUDIX domain
BENEMHLD_01328	1.38e-196	-	-	-	EG	-	-	-	EamA-like transporter family
BENEMHLD_01330	0.0	yybT	-	-	T	-	-	-	signaling protein consisting of a modified GGDEF domain and a DHH domain
BENEMHLD_01331	4.7e-98	rplI	-	-	J	ko:K02939	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
BENEMHLD_01332	0.0	dnaB	3.6.4.12	-	L	ko:K02314	ko03030,ko04112,map03030,map04112	ko00000,ko00001,ko01000,ko03032	Participates in initiation and elongation during chromosome replication
BENEMHLD_01333	3.05e-282	-	-	-	-	-	-	-	-
BENEMHLD_01334	0.0	pts32BC	2.7.1.211	-	G	ko:K02808,ko:K02809,ko:K02810	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system
BENEMHLD_01335	1.3e-210	murQ	4.2.1.126	-	G	ko:K07106	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
BENEMHLD_01336	4.64e-255	-	4.2.1.126	-	S	ko:K07106,ko:K09963	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Bacterial protein of unknown function (DUF871)
BENEMHLD_01337	4.34e-203	yleF	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
BENEMHLD_01338	1.71e-138	-	-	-	K	-	-	-	Transcriptional regulator C-terminal region
BENEMHLD_01339	1.9e-165	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_01340	0.0	ylbB	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
BENEMHLD_01341	2.16e-266	-	4.1.1.52	-	S	ko:K22213	-	ko00000,ko01000	Amidohydrolase
BENEMHLD_01342	0.0	purA	6.3.4.4	-	F	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BENEMHLD_01343	0.0	cadA	3.6.3.3, 3.6.3.5	-	P	ko:K01534	-	ko00000,ko01000	P-type ATPase
BENEMHLD_01344	1.78e-73	cadC5	-	-	K	ko:K21903	-	ko00000,ko03000	helix_turn_helix, Arsenical Resistance Operon Repressor
BENEMHLD_01345	7.78e-264	pmrB	-	-	EGP	-	-	-	Major Facilitator Superfamily
BENEMHLD_01346	0.0	nrdD	1.1.98.6	-	F	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Ribonucleoside-triphosphate reductase
BENEMHLD_01347	3.29e-169	-	-	-	-	-	-	-	-
BENEMHLD_01348	9.52e-37	-	-	-	-	-	-	-	-
BENEMHLD_01351	7.4e-196	-	-	-	K	-	-	-	Bacteriophage CI repressor helix-turn-helix domain
BENEMHLD_01353	3.74e-299	norB	-	-	EGP	ko:K08170	-	ko00000,ko00002,ko01504,ko02000	Major Facilitator Superfamily
BENEMHLD_01354	7.19e-177	-	-	-	K	ko:K12410	-	ko00000,ko01000	Sir2 family
BENEMHLD_01355	2.23e-165	-	-	-	S	-	-	-	SseB protein N-terminal domain
BENEMHLD_01356	7.13e-87	-	-	-	-	-	-	-	-
BENEMHLD_01357	0.0	thrS	6.1.1.3	-	J	ko:K01868	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BENEMHLD_01358	1.59e-290	-	-	-	V	ko:K07454	-	ko00000	regulation of methylation-dependent chromatin silencing
BENEMHLD_01359	3.91e-217	dnaI	-	-	L	ko:K11144	-	ko00000,ko03032	Primosomal protein DnaI
BENEMHLD_01360	0.0	dnaB	-	-	L	ko:K03346	-	ko00000,ko03032	replication initiation and membrane attachment
BENEMHLD_01361	3.55e-104	nrdR	-	-	K	ko:K07738	-	ko00000,ko03000	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BENEMHLD_01362	2.42e-133	coaE	2.7.1.24	-	F	ko:K00859	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BENEMHLD_01363	5.53e-207	fpg	3.2.2.23, 4.2.99.18	-	L	ko:K10563	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
BENEMHLD_01364	0.0	polA	2.7.7.7	-	L	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	ko00000,ko00001,ko01000,ko03032,ko03400	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BENEMHLD_01365	1.21e-153	ybhL	-	-	S	ko:K06890	-	ko00000	Inhibitor of apoptosis-promoting Bax1
BENEMHLD_01367	7.99e-253	-	-	-	S	-	-	-	Cell surface protein
BENEMHLD_01369	1.14e-180	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
BENEMHLD_01370	0.0	-	-	-	N	-	-	-	domain, Protein
BENEMHLD_01371	0.0	XK27_00195	-	-	K	-	-	-	Mga helix-turn-helix domain
BENEMHLD_01372	0.0	murC	6.3.2.8	-	M	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Belongs to the MurCDEF family
BENEMHLD_01373	0.0	sftA	-	-	D	ko:K03466	-	ko00000,ko03036	Belongs to the FtsK SpoIIIE SftA family
BENEMHLD_01375	8.42e-149	XK27_10290	-	-	J	ko:K06878	-	ko00000	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
BENEMHLD_01376	4.38e-72	ytpP	-	-	CO	-	-	-	Thioredoxin
BENEMHLD_01378	1.11e-154	trmB	2.1.1.33	-	J	ko:K03439	-	ko00000,ko01000,ko03016	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
BENEMHLD_01379	3.86e-190	ytmP	-	-	M	-	-	-	Choline/ethanolamine kinase
BENEMHLD_01380	7.59e-287	ecsB	-	-	U	ko:K01992	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_01381	1.5e-171	ecsA	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_01382	2.39e-98	hit	-	-	FG	ko:K02503	-	ko00000,ko04147	histidine triad
BENEMHLD_01383	2.79e-77	-	-	-	S	-	-	-	YtxH-like protein
BENEMHLD_01384	2.5e-203	prsA	5.2.1.8	-	M	ko:K07533	-	ko00000,ko01000,ko03110	Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins
BENEMHLD_01385	1.25e-233	yhaM	-	-	S	ko:K03698	-	ko00000,ko01000,ko03019	Metal dependent phosphohydrolases with conserved 'HD' motif.
BENEMHLD_01386	3.88e-73	-	-	-	S	-	-	-	Control of competence regulator ComK, YlbF/YmcA
BENEMHLD_01387	0.0	pbp2A	2.4.1.129, 3.4.16.4	GT51	M	ko:K12555	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	penicillin-binding protein
BENEMHLD_01388	2.16e-202	rluA	5.4.99.23, 5.4.99.28, 5.4.99.29	-	J	ko:K06177,ko:K06180	-	ko00000,ko01000,ko03009,ko03016	Responsible for synthesis of pseudouridine from uracil
BENEMHLD_01389	3.31e-98	argR1	-	-	K	ko:K03402	-	ko00000,ko03000	Regulates arginine biosynthesis genes
BENEMHLD_01390	0.0	argS	6.1.1.19	-	J	ko:K01887	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Arginyl-tRNA synthetase
BENEMHLD_01392	1.97e-88	-	-	-	-	-	-	-	-
BENEMHLD_01393	4.73e-31	-	-	-	-	-	-	-	-
BENEMHLD_01394	3.26e-226	pyrD	1.3.5.2, 1.3.98.1	-	F	ko:K00226,ko:K00254	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of dihydroorotate to orotate
BENEMHLD_01395	0.0	glpQ4	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	phosphodiesterase
BENEMHLD_01396	9.38e-158	mecA	-	-	NOT	ko:K16511	-	ko00000	Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis
BENEMHLD_01397	1.03e-105	spxA	-	-	K	ko:K16509	-	ko00000	Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress
BENEMHLD_01398	7.19e-180	yhfI	-	-	S	-	-	-	Metallo-beta-lactamase superfamily
BENEMHLD_01399	2.45e-119	-	-	-	S	-	-	-	Antibiotic biosynthesis monooxygenase
BENEMHLD_01400	0.0	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter (permease)
BENEMHLD_01401	5.63e-178	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_01402	5.84e-157	rrp1	-	-	K	ko:K02483	-	ko00000,ko02022	response regulator
BENEMHLD_01403	1.07e-265	-	-	-	T	ko:K19168	-	ko00000,ko02048	His Kinase A (phosphoacceptor) domain
BENEMHLD_01404	1.32e-140	nrdG	1.97.1.4	-	O	ko:K04068	-	ko00000,ko01000	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BENEMHLD_01405	0.0	copB	3.6.3.3, 3.6.3.4, 3.6.3.5	-	P	ko:K01533,ko:K01534	-	ko00000,ko01000	P-type ATPase
BENEMHLD_01406	9.97e-103	copR	-	-	K	ko:K02171	ko01501,map01501	ko00000,ko00001,ko00002,ko01504,ko03000	Copper transport repressor CopY TcrY
BENEMHLD_01407	2.11e-289	purD	6.3.4.13	-	F	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the GARS family
BENEMHLD_01408	0.0	purH	2.1.2.3, 3.5.4.10	-	F	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	ko00000,ko00001,ko00002,ko01000,ko04147	Bifunctional purine biosynthesis protein PurH
BENEMHLD_01409	2.36e-130	purN	2.1.2.2	-	F	ko:K11175	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BENEMHLD_01410	3.89e-241	purM	6.3.3.1	-	F	ko:K01933	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoribosylformylglycinamidine cyclo-ligase
BENEMHLD_01411	0.0	purF	2.4.2.14	-	F	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BENEMHLD_01412	0.0	purL	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BENEMHLD_01413	3.56e-167	purQ	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BENEMHLD_01414	9.52e-56	purS	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BENEMHLD_01415	6.63e-172	purC	6.3.2.6	-	F	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the SAICAR synthetase family
BENEMHLD_01416	4.27e-274	purK	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BENEMHLD_01417	1.04e-104	purE	5.4.99.18	-	F	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BENEMHLD_01418	2.72e-135	thiT	-	-	S	ko:K16789	-	ko00000,ko02000	Thiamine transporter protein (Thia_YuaJ)
BENEMHLD_01420	0.0	iolT	-	-	EGP	ko:K06609	-	ko00000,ko02000	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
BENEMHLD_01421	0.0	ptsI	2.7.3.9	-	G	ko:K08483	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BENEMHLD_01422	1.02e-51	ptsH	-	-	G	ko:K11189	-	ko00000,ko02000	phosphocarrier protein HPR
BENEMHLD_01423	6.69e-39	-	-	-	-	-	-	-	-
BENEMHLD_01424	0.0	clpE	-	-	O	ko:K03697,ko:K04086	-	ko00000,ko03110	Belongs to the ClpA ClpB family
BENEMHLD_01425	2.87e-62	XK27_09445	-	-	S	-	-	-	Domain of unknown function (DUF1827)
BENEMHLD_01426	0.0	prfC	-	-	J	ko:K02837	-	ko00000,ko03012	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BENEMHLD_01427	1.13e-308	hlyX	-	-	S	ko:K03699	-	ko00000,ko02042	Transporter associated domain
BENEMHLD_01428	3.07e-264	yueF	-	-	S	-	-	-	AI-2E family transporter
BENEMHLD_01429	1.96e-98	yjcF	-	-	S	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_01430	1.41e-125	-	-	-	-	-	-	-	-
BENEMHLD_01431	4.26e-135	ygaC	-	-	J	ko:K07586	-	ko00000	Belongs to the UPF0374 family
BENEMHLD_01432	2.12e-182	recX	-	-	S	ko:K03565	-	ko00000,ko03400	Regulatory protein RecX
BENEMHLD_01433	0.0	-	-	-	K	-	-	-	Mga helix-turn-helix domain
BENEMHLD_01434	2.24e-84	-	-	-	-	-	-	-	-
BENEMHLD_01435	0.0	rumA_1	2.1.1.190, 2.1.1.35	-	J	ko:K00557,ko:K03215	-	ko00000,ko01000,ko03009,ko03016	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BENEMHLD_01436	2.89e-105	-	-	-	F	-	-	-	Nucleoside 2-deoxyribosyltransferase
BENEMHLD_01437	0.0	poxL	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
BENEMHLD_01438	2.23e-281	mvaS	2.3.3.10	-	I	ko:K01641	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Hydroxymethylglutaryl-CoA synthase
BENEMHLD_01439	1.24e-279	mvaA	1.1.1.88, 2.3.1.9	-	C	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the HMG-CoA reductase family
BENEMHLD_01440	1.08e-269	atoB	1.1.1.88, 2.3.1.9	-	I	ko:K00054,ko:K00626	ko00071,ko00072,ko00280,ko00310,ko00362,ko00380,ko00620,ko00630,ko00640,ko00650,ko00720,ko00900,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,ko02020,map00071,map00072,map00280,map00310,map00362,map00380,map00620,map00630,map00640,map00650,map00720,map00900,map01100,map01110,map01120,map01130,map01200,map01212,map02020	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the thiolase family
BENEMHLD_01441	5.09e-66	-	-	-	-	-	-	-	-
BENEMHLD_01442	3.47e-207	-	-	-	G	-	-	-	Xylose isomerase domain protein TIM barrel
BENEMHLD_01443	4.44e-134	-	-	-	V	ko:K07448	-	ko00000,ko02048	Restriction endonuclease
BENEMHLD_01444	2.64e-207	-	-	-	G	-	-	-	Aldose 1-epimerase
BENEMHLD_01445	2.37e-271	-	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	succinyl-diaminopimelate desuccinylase
BENEMHLD_01446	8.38e-130	-	-	-	S	-	-	-	ECF transporter, substrate-specific component
BENEMHLD_01448	1.4e-105	-	-	-	K	-	-	-	FR47-like protein
BENEMHLD_01449	7.56e-108	ydcK	-	-	S	ko:K03095	-	ko00000	Belongs to the SprT family
BENEMHLD_01450	5.8e-168	XK27_08845	-	-	S	ko:K05833	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_01451	4.35e-176	XK27_08840	-	-	U	ko:K05832	-	ko00000,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family
BENEMHLD_01452	1.61e-226	XK27_08835	-	-	S	ko:K01989	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_01453	7.07e-97	-	-	-	-	-	-	-	-
BENEMHLD_01454	0.0	pacL	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
BENEMHLD_01455	3.03e-277	-	-	-	V	-	-	-	Beta-lactamase
BENEMHLD_01456	7.18e-195	nadE	6.3.1.5	-	F	ko:K01916	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source
BENEMHLD_01457	1.93e-286	-	-	-	V	-	-	-	Beta-lactamase
BENEMHLD_01458	0.0	pncB	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BENEMHLD_01459	2.79e-162	yvoA_2	-	-	K	ko:K03710	-	ko00000,ko03000	UbiC transcription regulator-associated domain protein
BENEMHLD_01460	2.49e-278	nagA	3.5.1.25	-	G	ko:K01443	ko00520,ko01130,map00520,map01130	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BENEMHLD_01461	1.18e-179	proC	1.5.1.2	-	E	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BENEMHLD_01462	0.0	yuxL	3.4.19.1	-	E	ko:K01303	-	ko00000,ko01000,ko01002	Prolyl oligopeptidase family
BENEMHLD_01463	2.39e-157	-	-	-	D	-	-	-	Domain of Unknown Function (DUF1542)
BENEMHLD_01464	3e-273	-	-	-	M	-	-	-	Glycosyl transferases group 1
BENEMHLD_01465	0.0	yebA	-	-	E	-	-	-	Transglutaminase/protease-like homologues
BENEMHLD_01466	1.26e-210	-	-	-	S	-	-	-	Protein of unknown function DUF58
BENEMHLD_01467	2.98e-217	moxR	-	-	S	ko:K03924	-	ko00000,ko01000	ATPase family associated with various cellular activities (AAA)
BENEMHLD_01468	1.06e-135	-	-	-	S	ko:K06384	-	ko00000	Stage II sporulation protein M
BENEMHLD_01469	2.39e-131	ydaF	-	-	J	ko:K03817	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
BENEMHLD_01470	0.0	glnP	-	-	P	ko:K02029,ko:K02030,ko:K10036	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_01471	0.0	glnP	-	-	P	ko:K02029,ko:K02030,ko:K10036	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_01472	7.69e-171	glnQ	3.6.3.21	-	E	ko:K02028	-	ko00000,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_01473	3.78e-217	-	-	-	G	-	-	-	Phosphotransferase enzyme family
BENEMHLD_01474	9.44e-187	-	-	-	S	-	-	-	AAA ATPase domain
BENEMHLD_01475	0.0	ydbT	-	-	S	ko:K08981	-	ko00000	Bacterial PH domain
BENEMHLD_01476	4.66e-105	ydbS	-	-	S	ko:K09167	-	ko00000	Bacterial PH domain
BENEMHLD_01477	9.87e-70	-	-	-	-	-	-	-	-
BENEMHLD_01478	7.92e-76	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
BENEMHLD_01479	1.39e-169	-	-	-	S	-	-	-	Protein of unknown function (DUF975)
BENEMHLD_01480	4.23e-306	-	-	-	G	ko:K02027	-	ko00000,ko00002,ko02000	Bacterial extracellular solute-binding protein
BENEMHLD_01481	6.51e-54	-	-	-	-	-	-	-	-
BENEMHLD_01482	1.89e-172	glnQ	-	-	E	ko:K17076	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_01483	0.0	XK27_05795	-	-	P	ko:K17073,ko:K17074	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BENEMHLD_01485	1.92e-89	ybfG	-	-	M	-	-	-	peptidoglycan-binding domain-containing protein
BENEMHLD_01486	0.0	ybfG	-	-	M	-	-	-	peptidoglycan-binding domain-containing protein
BENEMHLD_01491	3.19e-206	-	-	-	K	-	-	-	sequence-specific DNA binding
BENEMHLD_01492	4.13e-193	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BENEMHLD_01493	5.34e-245	-	-	-	K	ko:K20373	ko02024,map02024	ko00000,ko00001,ko03000	Helix-turn-helix XRE-family like proteins
BENEMHLD_01494	8.76e-282	-	-	-	EGP	-	-	-	Major facilitator Superfamily
BENEMHLD_01495	7.73e-231	manL	2.7.1.191, 2.7.1.202	-	G	ko:K02769,ko:K02793,ko:K02794	ko00051,ko00520,ko01100,ko01120,ko02060,map00051,map00520,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
BENEMHLD_01496	6.18e-173	manM	-	-	G	ko:K02746,ko:K02795	ko00051,ko00052,ko00520,ko01100,ko02060,map00051,map00052,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system
BENEMHLD_01497	7.33e-218	manN	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	system, mannose fructose sorbose family IID component
BENEMHLD_01498	1.54e-84	manO	-	-	S	-	-	-	Domain of unknown function (DUF956)
BENEMHLD_01499	6.3e-222	iolS	-	-	C	ko:K06607	-	ko00000,ko01000	Aldo keto reductase
BENEMHLD_01500	7.39e-274	yycB	-	-	P	ko:K03449	-	ko00000,ko02000	Transporter, major facilitator family protein
BENEMHLD_01501	0.0	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
BENEMHLD_01502	2.24e-146	ycaC	-	-	Q	-	-	-	Isochorismatase family
BENEMHLD_01503	1.7e-117	-	-	-	S	-	-	-	AAA domain
BENEMHLD_01504	1.33e-108	-	-	-	F	-	-	-	NUDIX domain
BENEMHLD_01505	9.03e-141	yokL3	-	-	J	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_01506	2.91e-72	celC	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose Cellobiose specific IIA subunit
BENEMHLD_01507	9.41e-69	pts20B	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_01508	8.04e-168	-	-	-	K	-	-	-	UbiC transcription regulator-associated domain protein
BENEMHLD_01509	0.0	chbC	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BENEMHLD_01510	3.7e-96	-	-	-	S	-	-	-	Domain of unknown function (DUF3284)
BENEMHLD_01511	3.37e-273	ybhE	-	-	S	ko:K09963	-	ko00000	Bacterial protein of unknown function (DUF871)
BENEMHLD_01512	0.0	argH	4.3.2.1	-	E	ko:K01755	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	argininosuccinate lyase
BENEMHLD_01513	1.19e-300	argG	6.3.4.5	-	E	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the argininosuccinate synthase family. Type 1 subfamily
BENEMHLD_01514	0.0	arpJ	-	-	P	ko:K02029,ko:K02030	-	ko00000,ko00002,ko02000	ABC transporter permease
BENEMHLD_01515	6.64e-161	-	1.11.1.10	-	S	ko:K00433	-	ko00000,ko01000	Alpha/beta hydrolase family
BENEMHLD_01516	5.24e-169	yycF	-	-	K	ko:K07668	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator
BENEMHLD_01517	0.0	vicK	2.7.13.3	-	T	ko:K07652	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
BENEMHLD_01518	0.0	yycH	-	-	S	-	-	-	YycH protein
BENEMHLD_01519	4.46e-184	yycI	-	-	S	-	-	-	YycH protein
BENEMHLD_01520	2.72e-196	vicX	3.1.26.11	-	S	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	domain protein
BENEMHLD_01521	1.15e-15	-	-	-	-	-	-	-	-
BENEMHLD_01522	1.99e-284	htrA	3.4.21.107	-	O	ko:K04771	ko01503,ko02020,map01503,map02020	ko00000,ko00001,ko00002,ko01000,ko01002,ko03110	serine protease
BENEMHLD_01523	2.35e-92	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
BENEMHLD_01524	1.22e-100	hsp1	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Hsp20/alpha crystallin family
BENEMHLD_01525	0.0	cadA	-	-	P	-	-	-	P-type ATPase
BENEMHLD_01526	1.34e-219	-	-	-	-	-	-	-	-
BENEMHLD_01528	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
BENEMHLD_01529	0.0	dapE	3.5.1.18	-	E	ko:K01439	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Peptidase dimerisation domain
BENEMHLD_01530	1.58e-141	-	-	-	-	-	-	-	-
BENEMHLD_01531	4.64e-255	ysdE	-	-	P	-	-	-	Citrate transporter
BENEMHLD_01532	1.74e-106	rlmH	2.1.1.177	-	J	ko:K00783	-	ko00000,ko01000,ko03009	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BENEMHLD_01533	2.5e-91	-	-	-	S	-	-	-	ASCH
BENEMHLD_01534	5.06e-160	-	-	-	-	-	-	-	-
BENEMHLD_01535	4.82e-113	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_01536	1.05e-174	ptp1	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Tyrosine phosphatase family
BENEMHLD_01537	1.32e-117	yfbM	-	-	K	-	-	-	FR47-like protein
BENEMHLD_01538	2.51e-143	-	-	-	S	-	-	-	alpha beta
BENEMHLD_01539	1.78e-49	-	-	-	-	-	-	-	-
BENEMHLD_01540	2.38e-80	-	-	-	-	-	-	-	-
BENEMHLD_01542	1.24e-07	-	-	-	S	-	-	-	SpoVT / AbrB like domain
BENEMHLD_01543	1.25e-67	sugE	-	-	U	ko:K11741	-	ko00000,ko02000	Multidrug resistance protein
BENEMHLD_01544	1.43e-222	draG	-	-	O	-	-	-	ADP-ribosylglycohydrolase
BENEMHLD_01545	3.57e-186	-	-	-	Q	-	-	-	Methyltransferase
BENEMHLD_01546	5.2e-98	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
BENEMHLD_01547	1.11e-203	-	1.1.1.346	-	S	ko:K06221	-	ko00000,ko01000	reductase
BENEMHLD_01548	3.94e-221	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHHA1 domain protein
BENEMHLD_01549	3.7e-260	-	-	-	S	-	-	-	endonuclease exonuclease phosphatase family protein
BENEMHLD_01551	2.1e-183	XK27_08455	-	-	G	ko:K02795	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sorbose-specific iic component
BENEMHLD_01552	8.69e-193	-	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system mannose/fructose/sorbose family IID component
BENEMHLD_01553	6.79e-105	-	2.7.1.191	-	G	ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
BENEMHLD_01554	2.83e-212	-	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
BENEMHLD_01555	2.38e-191	murQ	4.2.1.126	-	G	ko:K07106	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
BENEMHLD_01556	7.7e-255	-	-	-	V	-	-	-	Beta-lactamase
BENEMHLD_01557	9.1e-191	-	3.5.2.6	-	V	ko:K17836	ko00311,ko01130,ko01501,map00311,map01130,map01501	ko00000,ko00001,ko00002,ko01000,ko01504	Beta-lactamase enzyme family
BENEMHLD_01558	9.63e-289	-	-	-	EGP	-	-	-	Transmembrane secretion effector
BENEMHLD_01559	3.22e-269	ugpC	3.6.3.20	-	E	ko:K05816,ko:K10112	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Belongs to the ABC transporter superfamily
BENEMHLD_01560	9.13e-211	-	-	-	P	ko:K05814	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC-type sugar transport systems, permease components
BENEMHLD_01561	6.89e-191	ugpE	-	-	G	ko:K05815	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BENEMHLD_01562	0.0	ugpB	-	-	G	ko:K05813	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding protein
BENEMHLD_01563	5.05e-93	arsC	1.20.4.1	-	T	ko:K03741	-	ko00000,ko01000	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BENEMHLD_01564	3.71e-171	glpQ1	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
BENEMHLD_01565	0.0	nadC2	6.3.4.21	-	F	ko:K00763	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BENEMHLD_01566	9.35e-140	pncA	-	-	Q	-	-	-	Isochorismatase family
BENEMHLD_01567	1.24e-171	-	-	-	F	-	-	-	NUDIX domain
BENEMHLD_01568	0.0	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 31 family
BENEMHLD_01569	1.12e-128	-	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_01571	1.3e-146	yjhB	3.6.1.13	-	F	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	NUDIX domain
BENEMHLD_01572	6.5e-119	-	-	-	K	ko:K03828	-	ko00000,ko01000	Acetyltransferase (GNAT) domain
BENEMHLD_01573	5.64e-173	farR	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_01574	5.31e-206	-	-	-	G	-	-	-	Fructose-bisphosphate aldolase class-II
BENEMHLD_01575	6.52e-103	-	2.7.1.200	-	GT	ko:K02773	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_01576	5.95e-65	-	2.7.1.200	-	G	ko:K02774	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_01577	0.0	-	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
BENEMHLD_01578	0.0	-	-	-	G	-	-	-	FGGY family of carbohydrate kinases, C-terminal domain
BENEMHLD_01579	3.09e-208	-	-	-	G	-	-	-	Fructose-bisphosphate aldolase class-II
BENEMHLD_01583	1.48e-140	-	-	-	-	-	-	-	-
BENEMHLD_01584	1.66e-269	metK	2.5.1.6	-	H	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BENEMHLD_01585	0.0	mdr	-	-	EGP	-	-	-	Major Facilitator
BENEMHLD_01586	3.41e-107	-	-	-	K	-	-	-	MerR HTH family regulatory protein
BENEMHLD_01587	0.0	ycnB	-	-	U	-	-	-	Belongs to the major facilitator superfamily
BENEMHLD_01588	1.3e-155	-	-	-	S	-	-	-	Domain of unknown function (DUF4811)
BENEMHLD_01589	3.69e-159	yodM	3.6.1.27	-	I	ko:K19302	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	Acid phosphatase homologues
BENEMHLD_01590	0.0	leuS	6.1.1.4	-	J	ko:K01869	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Belongs to the class-I aminoacyl-tRNA synthetase family
BENEMHLD_01591	0.0	ytgP	-	-	S	ko:K03328	-	ko00000	Polysaccharide biosynthesis protein
BENEMHLD_01592	1.97e-168	rsuA	5.4.99.19	-	J	ko:K06183	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
BENEMHLD_01593	8.09e-48	yhcC	-	-	S	ko:K07069	-	ko00000	Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
BENEMHLD_01594	9.98e-182	nnrD	4.2.1.136, 5.1.99.6	-	H	ko:K17758,ko:K17759	-	ko00000,ko01000	Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BENEMHLD_01595	1.18e-122	-	-	-	F	-	-	-	NUDIX domain
BENEMHLD_01597	3.41e-112	gpo	1.11.1.9	-	O	ko:K00432	ko00480,ko00590,ko04918,map00480,map00590,map04918	ko00000,ko00001,ko01000	Belongs to the glutathione peroxidase family
BENEMHLD_01598	1.56e-289	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase, class I
BENEMHLD_01599	7.52e-239	cpdA	-	-	S	-	-	-	Calcineurin-like phosphoesterase
BENEMHLD_01600	1.66e-84	-	-	-	S	-	-	-	acid phosphatase activity
BENEMHLD_01601	2.93e-51	XK27_08630	-	-	T	ko:K07166	-	ko00000	Belongs to the UPF0237 family
BENEMHLD_01602	4.86e-314	XK27_08635	-	-	S	ko:K09157	-	ko00000	UPF0210 protein
BENEMHLD_01603	3.78e-276	coiA	-	-	S	ko:K06198	-	ko00000	Competence protein
BENEMHLD_01604	8.12e-151	yjbH	-	-	Q	-	-	-	Thioredoxin
BENEMHLD_01605	3.46e-136	-	-	-	S	-	-	-	CYTH
BENEMHLD_01606	2.92e-160	yjbM	2.7.6.5	-	S	ko:K07816	ko00230,map00230	ko00000,ko00001,ko01000	RelA SpoT domain protein
BENEMHLD_01607	3.86e-194	nadK	2.7.1.23	-	F	ko:K00858	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BENEMHLD_01608	4.44e-222	yjbO	5.4.99.23	-	G	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
BENEMHLD_01609	9.8e-259	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
BENEMHLD_01610	5.27e-147	cutC	-	-	P	ko:K06201	-	ko00000	Participates in the control of copper homeostasis
BENEMHLD_01611	4.82e-187	uppP	3.6.1.27	-	V	ko:K06153	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
BENEMHLD_01612	2.3e-254	pgl	3.1.1.31	-	G	ko:K07404	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Lactonase, 7-bladed beta-propeller
BENEMHLD_01613	9.18e-83	srlB	2.7.1.198	-	G	ko:K02781	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system glucitol/sorbitol-specific IIA component
BENEMHLD_01614	4.12e-56	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BENEMHLD_01615	1.72e-245	guaC	1.7.1.7	-	F	ko:K00364	ko00230,map00230	ko00000,ko00001,ko01000	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
BENEMHLD_01616	9.63e-220	corA	-	-	P	ko:K03284	-	ko00000,ko02000	CorA-like Mg2+ transporter protein
BENEMHLD_01617	4.88e-200	rrmA	2.1.1.187	-	H	ko:K00563,ko:K10947	-	ko00000,ko01000,ko03000,ko03009	Methyltransferase
BENEMHLD_01618	6.48e-125	cspR	2.1.1.207	-	J	ko:K03216	-	ko00000,ko01000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
BENEMHLD_01619	8.84e-93	-	-	-	S	-	-	-	Protein of unknown function (DUF1149)
BENEMHLD_01620	0.0	ftsK	-	-	D	ko:K03466	-	ko00000,ko03036	Belongs to the FtsK SpoIIIE SftA family
BENEMHLD_01621	4.47e-294	ymfF	-	-	S	-	-	-	Peptidase M16 inactive domain protein
BENEMHLD_01622	7.12e-312	ymfH	-	-	S	-	-	-	Peptidase M16
BENEMHLD_01623	3.01e-166	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl-(Acyl carrier protein) reductase
BENEMHLD_01624	1.8e-167	ymfM	-	-	S	ko:K15539	-	ko00000	Helix-turn-helix domain
BENEMHLD_01625	7.57e-135	pgsA	2.7.8.5	-	I	ko:K00995	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BENEMHLD_01626	1.18e-290	cinA	3.5.1.42	-	S	ko:K03742,ko:K03743	ko00760,map00760	ko00000,ko00001,ko01000	Belongs to the CinA family
BENEMHLD_01627	1.41e-241	recA	-	-	L	ko:K03553	ko03440,map03440	ko00000,ko00001,ko00002,ko03400	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BENEMHLD_01628	3.92e-36	-	-	-	-	-	-	-	-
BENEMHLD_01629	0.0	rny	-	-	S	ko:K18682	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Endoribonuclease that initiates mRNA decay
BENEMHLD_01630	8.08e-154	yvyE	3.4.13.9	-	S	ko:K01271	-	ko00000,ko01000,ko01002	YigZ family
BENEMHLD_01631	4.51e-299	comFA	-	-	L	ko:K02240	-	ko00000,ko00002,ko02044	Helicase C-terminal domain protein
BENEMHLD_01632	1.8e-117	comFC	-	-	S	ko:K02242	-	ko00000,ko00002,ko02044	Competence protein
BENEMHLD_01633	7.96e-127	hpf	-	-	J	ko:K05808	-	ko00000,ko03009	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BENEMHLD_01635	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
BENEMHLD_01636	1.11e-238	prfB	-	-	J	ko:K02836	-	ko00000,ko03012	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BENEMHLD_01637	2.59e-160	ftsE	-	-	D	ko:K09812	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03036	ABC transporter
BENEMHLD_01638	4.17e-204	ftsX	-	-	D	ko:K09811	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03036	Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation
BENEMHLD_01639	2.13e-255	minJ	-	-	O	-	-	-	Domain present in PSD-95, Dlg, and ZO-1/2.
BENEMHLD_01640	9.79e-168	phoP	-	-	K	ko:K07658	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	response regulator
BENEMHLD_01641	0.0	phoR	2.7.13.3	-	T	ko:K07636	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
BENEMHLD_01642	4.5e-200	pstS	-	-	P	ko:K02040	ko02010,ko02020,ko05152,map02010,map02020,map05152	ko00000,ko00001,ko00002,ko02000	Phosphate
BENEMHLD_01643	1.56e-205	pstC	-	-	P	ko:K02037	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	probably responsible for the translocation of the substrate across the membrane
BENEMHLD_01644	3.55e-200	pstA	-	-	P	ko:K02038	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Phosphate transport system permease protein PstA
BENEMHLD_01645	6.38e-192	pstB2	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
BENEMHLD_01646	1.75e-180	pstB1	3.6.3.27	-	P	ko:K02036	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system
BENEMHLD_01647	1.33e-156	phoU	-	-	P	ko:K02039	-	ko00000	Plays a role in the regulation of phosphate uptake
BENEMHLD_01648	2.79e-177	-	-	-	L	ko:K07497	-	ko00000	hmm pf00665
BENEMHLD_01649	5.65e-171	-	-	-	L	-	-	-	Helix-turn-helix domain
BENEMHLD_01650	0.0	yvlB	-	-	S	-	-	-	Putative adhesin
BENEMHLD_01651	7.01e-49	-	-	-	-	-	-	-	-
BENEMHLD_01652	2.28e-61	yvlD	-	-	S	ko:K08972	-	ko00000	Mycobacterial 4 TMS phage holin, superfamily IV
BENEMHLD_01653	5.82e-223	hprK	-	-	F	ko:K06023	-	ko00000,ko01000	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BENEMHLD_01654	1.2e-202	lgt	-	-	M	ko:K13292	-	ko00000,ko01000	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BENEMHLD_01655	5.39e-251	gpsA	1.1.1.94	-	I	ko:K00057	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	Glycerol-3-phosphate dehydrogenase
BENEMHLD_01656	8.36e-230	trxB	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
BENEMHLD_01657	0.0	pgm	5.4.2.2	-	G	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoglucomutase phosphomannomutase, alpha beta alpha domain
BENEMHLD_01658	2.82e-153	yfbR	-	-	S	ko:K07023	-	ko00000	HD containing hydrolase-like enzyme
BENEMHLD_01659	0.0	uvrB	-	-	L	ko:K03702	ko03420,map03420	ko00000,ko00001,ko03400	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
BENEMHLD_01660	0.0	uvrA	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
BENEMHLD_01661	1.04e-110	-	-	-	S	-	-	-	Short repeat of unknown function (DUF308)
BENEMHLD_01662	1.47e-213	yvcJ	-	-	S	ko:K06958	-	ko00000,ko03019	Displays ATPase and GTPase activities
BENEMHLD_01663	3.49e-247	yvcK	-	-	S	-	-	-	Required for morphogenesis under gluconeogenic growth conditions
BENEMHLD_01664	1.66e-220	whiA	-	-	K	ko:K09762	-	ko00000	May be required for sporulation
BENEMHLD_01665	6.45e-105	ohrR	-	-	K	ko:K18906	-	ko00000,ko00002,ko01504,ko03000	helix_turn_helix multiple antibiotic resistance protein
BENEMHLD_01666	1.71e-131	clpP	3.4.21.92	-	O	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
BENEMHLD_01668	2.73e-241	cggR	-	-	K	ko:K05311	-	ko00000,ko03000	Putative sugar-binding domain
BENEMHLD_01669	2.99e-247	gap	1.2.1.12	-	G	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
BENEMHLD_01670	1.52e-282	pgk	2.7.2.3	-	F	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the phosphoglycerate kinase family
BENEMHLD_01671	8.05e-180	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
BENEMHLD_01672	5.04e-314	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
BENEMHLD_01673	5.53e-84	-	-	-	-	-	-	-	-
BENEMHLD_01674	0.0	eriC	-	-	P	ko:K03281	-	ko00000	chloride
BENEMHLD_01675	1.48e-78	-	-	-	-	-	-	-	-
BENEMHLD_01676	2.92e-42	secG	-	-	U	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase
BENEMHLD_01677	2.23e-178	est	3.1.1.1	-	S	ko:K03928	-	ko00000,ko01000	Serine aminopeptidase, S33
BENEMHLD_01678	0.0	rnr	-	-	J	ko:K12573	ko03018,map03018	ko00000,ko00001,ko01000,ko03016,ko03019	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
BENEMHLD_01679	1.28e-107	smpB	-	-	J	ko:K03664	-	ko00000	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
BENEMHLD_01680	0.0	nplT	3.2.1.133, 3.2.1.135, 3.2.1.54	GH13	G	ko:K01208	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 13 family
BENEMHLD_01681	0.0	mapA	2.4.1.8	GH65	G	ko:K00691	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	hydrolase, family 65, central catalytic
BENEMHLD_01682	1.05e-152	-	5.4.2.6	-	S	ko:K01838	ko00500,map00500	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
BENEMHLD_01683	7.78e-66	-	-	-	-	-	-	-	-
BENEMHLD_01684	9.23e-309	YSH1	-	-	S	ko:K12574	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Metallo-beta-lactamase superfamily
BENEMHLD_01685	1.76e-39	-	-	-	-	-	-	-	-
BENEMHLD_01686	1.35e-238	-	-	-	C	-	-	-	Cytochrome bd terminal oxidase subunit II
BENEMHLD_01687	0.0	cydA	1.10.3.14	-	C	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	Cytochrome bd terminal oxidase subunit I
BENEMHLD_01688	5.33e-119	yfkM	3.5.1.124	-	S	ko:K05520	-	ko00000,ko01000,ko01002	DJ-1/PfpI family
BENEMHLD_01689	2.22e-16	-	-	-	-	-	-	-	-
BENEMHLD_01690	3.26e-48	rpsR	-	-	J	ko:K02963	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BENEMHLD_01691	1.41e-130	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism
BENEMHLD_01692	2.26e-64	rpsF	-	-	J	ko:K02990	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Binds together with S18 to 16S ribosomal RNA
BENEMHLD_01693	8.99e-99	-	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Single-strand binding protein family
BENEMHLD_01694	5.66e-08	deoC	4.1.2.4	-	F	ko:K01619	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BENEMHLD_01698	6.04e-12	-	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Single-strand binding protein family
BENEMHLD_01699	0.0	gyrA	5.99.1.3	-	L	ko:K02469	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BENEMHLD_01700	0.0	gyrB	5.99.1.3	-	L	ko:K02470	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BENEMHLD_01701	8.07e-259	recF	-	-	L	ko:K03629	ko03440,map03440	ko00000,ko00001,ko03400	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BENEMHLD_01702	1.21e-44	yaaA	-	-	S	ko:K14761	-	ko00000,ko03009	S4 domain protein YaaA
BENEMHLD_01703	6.18e-262	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
BENEMHLD_01704	0.0	dnaA	-	-	L	ko:K02313	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko03032,ko03036	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BENEMHLD_01705	0.0	-	-	-	L	-	-	-	PFAM Integrase core domain
BENEMHLD_01706	3.26e-23	rpmH	-	-	J	ko:K02914	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL34 family
BENEMHLD_01708	1.56e-78	rnpA	3.1.26.5	-	J	ko:K03536	-	ko00000,ko01000,ko03016	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
BENEMHLD_01709	8.28e-182	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
BENEMHLD_01710	5.21e-178	jag	-	-	S	ko:K06346	-	ko00000	R3H domain protein
BENEMHLD_01711	0.0	mnmE	-	-	S	ko:K03650	-	ko00000,ko01000,ko03016	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BENEMHLD_01712	0.0	gidA	-	-	D	ko:K03495	-	ko00000,ko03016,ko03036	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
BENEMHLD_01713	0.0	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
BENEMHLD_01714	6.86e-43	-	-	-	-	-	-	-	-
BENEMHLD_01716	2.57e-173	-	-	-	S	-	-	-	Putative threonine/serine exporter
BENEMHLD_01717	1.8e-105	-	-	-	S	-	-	-	Threonine/Serine exporter, ThrE
BENEMHLD_01718	2.27e-290	amd	-	-	E	-	-	-	Peptidase family M20/M25/M40
BENEMHLD_01721	7.4e-254	ypjH	-	-	C	ko:K08317	-	ko00000,ko01000	dehydrogenase
BENEMHLD_01724	5.43e-192	-	-	-	M	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	NLPA lipoprotein
BENEMHLD_01725	1.34e-187	mtnU	3.5.1.3	-	S	ko:K13566	ko00250,map00250	ko00000,ko00001,ko01000	Carbon-nitrogen hydrolase
BENEMHLD_01726	8.18e-288	mtnE	-	-	E	ko:K08969	ko00270,ko01100,map00270,map01100	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
BENEMHLD_01727	0.0	-	-	-	M	-	-	-	Leucine rich repeats (6 copies)
BENEMHLD_01728	5.68e-242	-	-	-	-	-	-	-	-
BENEMHLD_01729	2.73e-265	yknZ	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	MacB-like periplasmic core domain
BENEMHLD_01730	2.05e-162	-	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_01731	1.6e-197	hlyD3	-	-	M	ko:K02005	-	ko00000	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BENEMHLD_01732	3.21e-287	-	-	-	K	-	-	-	IrrE N-terminal-like domain
BENEMHLD_01733	9.01e-180	-	-	-	-	-	-	-	-
BENEMHLD_01734	1.1e-26	-	-	-	-	-	-	-	-
BENEMHLD_01735	7.2e-60	-	-	-	-	-	-	-	-
BENEMHLD_01736	1.35e-192	-	-	-	S	-	-	-	haloacid dehalogenase-like hydrolase
BENEMHLD_01737	1.02e-170	nagB	3.5.99.6	-	G	ko:K02564	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
BENEMHLD_01738	0.0	mtlA	2.7.1.197	-	G	ko:K02799,ko:K02800	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_01739	0.0	mtlR	-	-	K	ko:K03483	-	ko00000,ko03000	Mga helix-turn-helix domain
BENEMHLD_01740	5.35e-102	mtlF	2.7.1.197	-	G	ko:K02798	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BENEMHLD_01741	4.29e-276	mtlD	1.1.1.17	-	C	ko:K00009	ko00051,map00051	ko00000,ko00001,ko01000	mannitol-1-phosphate 5-dehydrogenase activity
BENEMHLD_01742	9.48e-237	lipA	-	-	I	-	-	-	Carboxylesterase family
BENEMHLD_01743	2.32e-233	-	-	-	D	ko:K06889	-	ko00000	Alpha beta
BENEMHLD_01744	3.77e-217	prs2	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BENEMHLD_01746	1.4e-35	ytgB	-	-	S	-	-	-	Transglycosylase associated protein
BENEMHLD_01747	2.3e-23	-	-	-	-	-	-	-	-
BENEMHLD_01748	6.83e-18	-	-	-	S	-	-	-	Phage head-tail joining protein
BENEMHLD_01749	2.28e-63	-	-	-	S	-	-	-	Phage gp6-like head-tail connector protein
BENEMHLD_01750	0.0	-	-	-	S	ko:K06904	-	ko00000	Phage capsid family
BENEMHLD_01751	4.72e-285	-	-	-	S	-	-	-	Phage portal protein
BENEMHLD_01752	6.27e-31	-	-	-	-	-	-	-	-
BENEMHLD_01753	0.0	terL	-	-	S	-	-	-	overlaps another CDS with the same product name
BENEMHLD_01754	8.05e-106	terS	-	-	L	-	-	-	Phage terminase, small subunit
BENEMHLD_01755	3.53e-99	-	-	-	L	ko:K07451	-	ko00000,ko01000,ko02048	Phage-associated protein
BENEMHLD_01756	3.84e-103	-	-	-	-	-	-	-	-
BENEMHLD_01757	0.0	-	-	-	S	-	-	-	Virulence-associated protein E
BENEMHLD_01758	1.07e-205	-	-	-	L	-	-	-	Bifunctional DNA primase/polymerase, N-terminal
BENEMHLD_01759	1.43e-35	-	-	-	-	-	-	-	-
BENEMHLD_01760	6.03e-56	-	-	-	-	-	-	-	-
BENEMHLD_01761	2.82e-40	-	-	-	-	-	-	-	-
BENEMHLD_01762	3.46e-25	-	-	-	-	-	-	-	-
BENEMHLD_01763	3.54e-43	-	-	-	-	-	-	-	-
BENEMHLD_01764	4.94e-58	-	-	-	-	-	-	-	-
BENEMHLD_01765	1.75e-14	-	-	-	K	ko:K07729	-	ko00000,ko03000	TRANSCRIPTIONal
BENEMHLD_01766	8.45e-140	-	-	-	K	ko:K07726	-	ko00000,ko03000	sequence-specific DNA binding
BENEMHLD_01767	3.32e-285	sip	-	-	L	-	-	-	Belongs to the 'phage' integrase family
BENEMHLD_01768	3.35e-217	-	-	-	O	-	-	-	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BENEMHLD_01769	1.11e-169	-	-	-	F	-	-	-	Glutamine amidotransferase class-I
BENEMHLD_01770	3.93e-90	-	-	-	-	-	-	-	-
BENEMHLD_01771	3.03e-196	-	-	-	I	-	-	-	NAD binding domain of 6-phosphogluconate dehydrogenase
BENEMHLD_01773	2.8e-130	-	-	-	-	-	-	-	-
BENEMHLD_01774	5.2e-156	malR	-	-	KT	ko:K02475,ko:K11615	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	cheY-homologous receiver domain
BENEMHLD_01775	0.0	dpiB	2.7.13.3	-	T	ko:K02476,ko:K11614	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Single cache domain 3
BENEMHLD_01776	5.39e-292	malP	-	-	C	ko:K11616	ko02020,map02020	ko00000,ko00001	2-hydroxycarboxylate transporter family
BENEMHLD_01777	9.18e-86	mae	1.1.1.38	-	C	ko:K00027	ko00620,ko01200,ko02020,map00620,map01200,map02020	ko00000,ko00001,ko01000	Malic enzyme, NAD binding domain
BENEMHLD_01778	3.26e-162	mae	1.1.1.38	-	C	ko:K00027	ko00620,ko01200,ko02020,map00620,map01200,map02020	ko00000,ko00001,ko01000	Malic enzyme, NAD binding domain
BENEMHLD_01781	6.38e-88	yjdF3	-	-	S	-	-	-	Protein of unknown function (DUF2992)
BENEMHLD_01782	3.12e-146	-	-	-	S	-	-	-	Bacteriocin-protection, YdeI or OmpD-Associated
BENEMHLD_01783	0.0	aspA	4.3.1.1	-	E	ko:K01744	ko00250,ko01100,map00250,map01100	ko00000,ko00001,ko01000	Fumarase C C-terminus
BENEMHLD_01784	3.94e-222	-	-	-	L	-	-	-	Transposase
BENEMHLD_01785	2.83e-238	yveB	-	-	I	-	-	-	PAP2 superfamily
BENEMHLD_01786	1.48e-272	mccF	-	-	V	-	-	-	LD-carboxypeptidase
BENEMHLD_01787	4.61e-57	-	-	-	-	-	-	-	-
BENEMHLD_01788	1.99e-262	ddl	6.3.2.4	-	F	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Belongs to the D-alanine--D-alanine ligase family
BENEMHLD_01789	1.56e-55	-	-	-	-	-	-	-	-
BENEMHLD_01790	7.43e-144	-	-	-	-	-	-	-	-
BENEMHLD_01791	4.41e-293	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
BENEMHLD_01792	1.51e-77	-	-	-	L	-	-	-	Putative transposase of IS4/5 family (DUF4096)
BENEMHLD_01793	1.69e-107	-	-	-	L	-	-	-	Transposase DDE domain
BENEMHLD_01794	1.11e-111	-	-	-	-	-	-	-	-
BENEMHLD_01795	5.89e-257	yclK	-	-	T	-	-	-	Histidine kinase
BENEMHLD_01796	4.14e-155	-	-	-	K	-	-	-	Transcriptional regulatory protein, C terminal
BENEMHLD_01797	2.11e-118	adaB	2.1.1.63	-	L	ko:K00567,ko:K10778,ko:K13531	-	ko00000,ko01000,ko03000,ko03400	Methyltransferase
BENEMHLD_01798	1.17e-245	ldhD3	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BENEMHLD_01799	2.99e-65	ptcB	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_01800	4.89e-70	celC	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIA subunit
BENEMHLD_01801	1.66e-111	-	-	-	-	-	-	-	-
BENEMHLD_01802	0.0	celD	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BENEMHLD_01803	0.0	bglA	3.2.1.86	GT1	G	ko:K01223	ko00010,ko00500,map00010,map00500	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 1 family
BENEMHLD_01804	5.01e-171	-	-	-	K	ko:K03489	-	ko00000,ko03000	UTRA
BENEMHLD_01805	1.66e-57	-	-	-	-	-	-	-	-
BENEMHLD_01806	1e-76	-	-	-	S	ko:K08987	-	ko00000	Protein of unknown function (DUF1304)
BENEMHLD_01807	9.85e-72	-	-	-	S	-	-	-	Protein of unknown function (DUF1516)
BENEMHLD_01808	0.0	XK27_07275	-	-	S	ko:K06901	-	ko00000,ko02000	permease
BENEMHLD_01809	1.06e-73	-	-	-	S	ko:K09004	-	ko00000	DsrE/DsrF-like family
BENEMHLD_01812	4.16e-178	ytlC	3.6.3.36	-	P	ko:K02049,ko:K10831,ko:K15555	ko00920,ko02010,map00920,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_01813	1.06e-234	-	-	-	P	ko:K15551	ko00920,ko02010,map00920,map02010	ko00000,ko00001,ko00002,ko02000	NMT1-like family
BENEMHLD_01814	8.04e-184	-	-	-	P	ko:K02050,ko:K15552	ko00920,ko02010,map00920,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BENEMHLD_01815	0.0	-	-	-	P	-	-	-	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BENEMHLD_01816	0.0	-	-	-	S	ko:K07112	-	ko00000	Sulphur transport
BENEMHLD_01817	8.52e-211	-	-	-	K	-	-	-	LysR substrate binding domain
BENEMHLD_01818	3.61e-245	mhqA	-	-	E	ko:K15975	-	ko00000	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BENEMHLD_01819	8.2e-58	-	-	-	-	-	-	-	-
BENEMHLD_01820	9.29e-138	yoaA	-	-	J	-	-	-	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BENEMHLD_01821	0.0	-	-	-	-	-	-	-	-
BENEMHLD_01823	6.03e-179	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
BENEMHLD_01824	2.83e-241	ynjC	-	-	S	-	-	-	Cell surface protein
BENEMHLD_01825	0.0	-	-	-	L	-	-	-	Mga helix-turn-helix domain
BENEMHLD_01826	1.81e-226	-	-	-	S	-	-	-	Protein of unknown function (DUF805)
BENEMHLD_01827	7.16e-77	-	-	-	-	-	-	-	-
BENEMHLD_01828	0.0	rarA	-	-	L	ko:K07478	-	ko00000	recombination factor protein RarA
BENEMHLD_01829	1.02e-280	ackA	2.7.2.1	-	F	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BENEMHLD_01830	8.96e-172	-	-	-	K	-	-	-	DeoR C terminal sensor domain
BENEMHLD_01831	0.0	-	2.7.1.17	-	G	ko:K00854	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko00002,ko01000	FGGY family of carbohydrate kinases, C-terminal domain
BENEMHLD_01832	9.14e-205	-	4.1.2.13	-	G	ko:K01624	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-bisphosphate aldolase class-II
BENEMHLD_01833	2.21e-309	-	-	-	S	ko:K03475	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
BENEMHLD_01834	1.16e-204	pphA	3.1.3.16	-	T	ko:K07313	-	ko00000,ko01000	Calcineurin-like phosphoesterase superfamily domain
BENEMHLD_01835	7.19e-177	-	-	-	L	ko:K07457	-	ko00000	Base excision DNA repair protein, HhH-GPD family
BENEMHLD_01836	0.0	bmr3	-	-	EGP	-	-	-	Major Facilitator
BENEMHLD_01837	3.05e-29	-	-	-	-	-	-	-	-
BENEMHLD_01839	0.0	xfp	4.1.2.22, 4.1.2.9	-	G	ko:K01621	ko00030,ko00710,ko01100,ko01120,map00030,map00710,map01100,map01120	ko00000,ko00001,ko01000	Phosphoketolase
BENEMHLD_01840	0.0	oppA	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
BENEMHLD_01841	2.26e-118	-	-	-	-	-	-	-	-
BENEMHLD_01842	1.41e-151	-	-	-	-	-	-	-	-
BENEMHLD_01843	2.88e-165	-	-	-	-	-	-	-	-
BENEMHLD_01844	6.87e-153	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_01845	8.68e-104	-	-	-	-	-	-	-	-
BENEMHLD_01846	1.1e-107	-	-	-	S	-	-	-	NUDIX domain
BENEMHLD_01847	7.96e-273	-	-	-	S	-	-	-	nuclear-transcribed mRNA catabolic process, no-go decay
BENEMHLD_01848	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
BENEMHLD_01849	2.16e-209	-	-	-	K	ko:K20373,ko:K20374,ko:K20375	ko02024,map02024	ko00000,ko00001,ko03000	Transcriptional activator, Rgg GadR MutR family
BENEMHLD_01850	0.0	fnq20	-	-	S	-	-	-	FAD-NAD(P)-binding
BENEMHLD_01851	0.0	nox	1.6.3.4	-	C	ko:K17869	-	ko00000,ko01000	NADH oxidase
BENEMHLD_01852	6.18e-150	-	-	-	-	-	-	-	-
BENEMHLD_01853	2.57e-308	-	-	-	S	ko:K06872	-	ko00000	TPM domain
BENEMHLD_01854	1.42e-183	yunE	-	-	S	ko:K07090	-	ko00000	Sulfite exporter TauE/SafE
BENEMHLD_01855	1.58e-74	ywjH	-	-	S	-	-	-	Protein of unknown function (DUF1634)
BENEMHLD_01856	1.47e-07	-	-	-	-	-	-	-	-
BENEMHLD_01857	8.87e-85	-	-	-	-	-	-	-	-
BENEMHLD_01858	2.59e-69	-	-	-	-	-	-	-	-
BENEMHLD_01859	1.63e-109	-	-	-	C	-	-	-	Flavodoxin
BENEMHLD_01860	4.57e-49	-	-	-	-	-	-	-	-
BENEMHLD_01861	4.87e-37	-	-	-	-	-	-	-	-
BENEMHLD_01862	7.34e-222	-	1.1.1.26	-	CH	ko:K00015	ko00630,ko01100,ko01110,ko01120,map00630,map01100,map01110,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BENEMHLD_01863	1.87e-93	-	-	-	S	ko:K07006	-	ko00000	Pyridoxamine 5'-phosphate oxidase
BENEMHLD_01864	1.55e-51	-	-	-	S	-	-	-	Transglycosylase associated protein
BENEMHLD_01865	2.04e-117	-	-	-	S	-	-	-	Protein conserved in bacteria
BENEMHLD_01866	9.32e-40	-	-	-	-	-	-	-	-
BENEMHLD_01867	1.62e-80	asp23	-	-	S	-	-	-	Asp23 family, cell envelope-related function
BENEMHLD_01868	3.02e-87	asp2	-	-	S	-	-	-	Asp23 family, cell envelope-related function
BENEMHLD_01869	2.34e-167	-	3.8.1.2	-	S	ko:K01560	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120	ko00000,ko00001,ko01000	Haloacid dehalogenase-like hydrolase
BENEMHLD_01870	4.96e-148	-	-	-	S	-	-	-	Protein of unknown function (DUF969)
BENEMHLD_01871	9.44e-159	-	-	-	S	-	-	-	Protein of unknown function (DUF979)
BENEMHLD_01872	0.0	pbp2b	-	-	M	ko:K00687,ko:K12553,ko:K21465,ko:K21466	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein
BENEMHLD_01873	3.82e-158	gluP	3.4.21.105	-	S	ko:K19225	-	ko00000,ko01000,ko01002	Peptidase, S54 family
BENEMHLD_01874	1.37e-54	yqgQ	-	-	S	-	-	-	Bacterial protein of unknown function (DUF910)
BENEMHLD_01875	1.44e-228	glcK	2.7.1.2	-	G	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Glucokinase
BENEMHLD_01876	6.47e-95	yqhL	-	-	P	-	-	-	Rhodanese-like protein
BENEMHLD_01877	9.56e-35	WQ51_02665	-	-	S	-	-	-	Protein of unknown function (DUF3042)
BENEMHLD_01878	1.76e-233	miaA	2.5.1.75	-	F	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	ko00000,ko00001,ko01000,ko01006,ko03016	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BENEMHLD_01879	1.21e-307	ynbB	-	-	P	-	-	-	aluminum resistance
BENEMHLD_01880	0.0	speA	4.1.1.17, 4.1.1.18, 4.1.1.19	-	E	ko:K01581,ko:K01582,ko:K01585	ko00310,ko00330,ko00480,ko00960,ko01100,ko01110,ko01130,map00310,map00330,map00480,map00960,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Orn/Lys/Arg decarboxylase, C-terminal domain
BENEMHLD_01881	5.4e-80	glnR	-	-	K	ko:K03713,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000,ko03000	Transcriptional regulator
BENEMHLD_01882	0.0	glnA	6.3.1.2	-	E	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	ko00000,ko00001,ko01000,ko04147	glutamine synthetase
BENEMHLD_01883	0.0	pepX	3.4.14.11	-	E	ko:K01281	-	ko00000,ko01000,ko01002	Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
BENEMHLD_01884	0.0	-	-	-	V	ko:K06147,ko:K06148	-	ko00000,ko02000	ABC transporter transmembrane region
BENEMHLD_01886	2.31e-298	-	-	-	S	-	-	-	Membrane
BENEMHLD_01887	1.77e-20	-	-	-	-	-	-	-	-
BENEMHLD_01888	1.88e-43	-	-	-	-	-	-	-	-
BENEMHLD_01889	1.18e-66	rplU	-	-	J	ko:K02888	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to 23S rRNA in the presence of protein L20
BENEMHLD_01890	7.21e-74	ysxB	-	-	J	ko:K07584	-	ko00000	Cysteine protease Prp
BENEMHLD_01891	1.6e-63	rpmA	-	-	J	ko:K02899	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL27 family
BENEMHLD_01892	6.4e-261	pepP	3.4.11.9, 3.4.13.9	-	E	ko:K01262,ko:K01271	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
BENEMHLD_01893	4.27e-132	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BENEMHLD_01894	7.46e-101	WQ51_04310	-	-	S	ko:K10947	-	ko00000,ko03000	Asp23 family, cell envelope-related function
BENEMHLD_01895	9.08e-88	nusB	-	-	K	ko:K03625	-	ko00000,ko03009,ko03021	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BENEMHLD_01896	9.8e-197	folD	1.5.1.5, 3.5.4.9	-	F	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BENEMHLD_01897	1.15e-313	xseA	3.1.11.6	-	L	ko:K03601	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
BENEMHLD_01898	2.87e-43	xseB	3.1.11.6	-	L	ko:K03602	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
BENEMHLD_01899	1.23e-190	ispA	2.5.1.1, 2.5.1.10, 2.5.1.29	-	H	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01006	Belongs to the FPP GGPP synthase family
BENEMHLD_01900	3.3e-196	rrmJ	2.1.1.226, 2.1.1.227	-	J	ko:K06442	-	ko00000,ko01000,ko03009	Ribosomal RNA large subunit methyltransferase J
BENEMHLD_01901	3.59e-97	argR2	-	-	K	ko:K03402	-	ko00000,ko03000	Regulates arginine biosynthesis genes
BENEMHLD_01902	0.0	recN	-	-	L	ko:K03631	-	ko00000,ko03400	May be involved in recombinational repair of damaged DNA
BENEMHLD_01903	8.07e-68	-	-	-	-	-	-	-	-
BENEMHLD_01904	2.8e-159	-	-	-	S	ko:K07001	-	ko00000	Patatin-like phospholipase
BENEMHLD_01905	5.09e-148	gmk	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Essential for recycling GMP and indirectly, cGMP
BENEMHLD_01906	4.4e-47	rpoZ	2.7.7.6	-	K	ko:K03060	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
BENEMHLD_01907	6.86e-276	coaBC	4.1.1.36, 6.3.2.5	-	H	ko:K01598,ko:K13038	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BENEMHLD_01908	0.0	priA	-	-	L	ko:K04066	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BENEMHLD_01909	1.68e-226	fmt	2.1.2.9	-	J	ko:K00604	ko00670,ko00970,map00670,map00970	ko00000,ko00001,ko01000	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BENEMHLD_01910	0.0	sun	2.1.1.176	-	J	ko:K03500	-	ko00000,ko01000,ko03009	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BENEMHLD_01911	3.15e-175	stp	3.1.3.16	-	T	ko:K20074	-	ko00000,ko01000,ko01009	phosphatase
BENEMHLD_01912	0.0	prkC	2.7.11.1	-	KLT	ko:K08884,ko:K12132	-	ko00000,ko01000,ko01001	serine threonine protein kinase
BENEMHLD_01913	1.8e-217	rsgA	3.1.3.100	-	S	ko:K06949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
BENEMHLD_01914	2.81e-149	rpe	5.1.3.1	-	G	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ribulose-phosphate 3-epimerase family
BENEMHLD_01915	5.08e-164	thiN	2.7.6.2	-	H	ko:K00949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000	thiamine pyrophosphokinase
BENEMHLD_01916	3.26e-36	rpmB	-	-	J	ko:K02902	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL28 family
BENEMHLD_01917	5.83e-75	yloU	-	-	S	-	-	-	Asp23 family, cell envelope-related function
BENEMHLD_01918	0.0	yloV	-	-	S	ko:K07030	-	ko00000	DAK2 domain fusion protein YloV
BENEMHLD_01919	0.0	recG	3.6.4.12	-	L	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BENEMHLD_01920	1.72e-242	plsX	2.3.1.15	-	I	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
BENEMHLD_01921	9.22e-49	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BENEMHLD_01922	2.99e-247	oppD	-	-	P	ko:K02031,ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
BENEMHLD_01923	1.39e-229	oppF	-	-	P	ko:K02032	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Belongs to the ABC transporter superfamily
BENEMHLD_01924	8.93e-223	oppB	-	-	P	ko:K02033,ko:K02034	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BENEMHLD_01925	6.51e-196	oppC	-	-	EP	ko:K02034	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BENEMHLD_01926	0.0	oppA1	-	-	E	ko:K02035	ko02024,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
BENEMHLD_01927	1.97e-161	rnc	3.1.26.3	-	J	ko:K03685	ko03008,ko05205,map03008,map05205	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
BENEMHLD_01928	0.0	smc	-	-	D	ko:K03529	-	ko00000,ko03036	Required for chromosome condensation and partitioning
BENEMHLD_01929	7.76e-234	ftsY	-	-	U	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
BENEMHLD_01930	1.12e-69	-	-	-	-	-	-	-	-
BENEMHLD_01931	3.74e-36	-	-	-	-	-	-	-	-
BENEMHLD_01932	2.45e-75	ylxM	-	-	S	ko:K09787	-	ko00000	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
BENEMHLD_01933	8.77e-303	ffh	3.6.5.4	-	U	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko01000,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BENEMHLD_01934	2.97e-59	rpsP	-	-	J	ko:K02959	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bS16 family
BENEMHLD_01935	2.2e-51	ylqC	-	-	S	ko:K06960	-	ko00000	Belongs to the UPF0109 family
BENEMHLD_01936	9.14e-122	rimM	-	-	J	ko:K02860	-	ko00000,ko03009	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BENEMHLD_01937	2.61e-190	trmD	2.1.1.228	-	J	ko:K00554	-	ko00000,ko01000,ko03016	Belongs to the RNA methyltransferase TrmD family
BENEMHLD_01938	1.16e-74	rplS	-	-	J	ko:K02884	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
BENEMHLD_01939	1.08e-35	-	-	-	-	-	-	-	-
BENEMHLD_01940	3.45e-49	ynzC	-	-	S	-	-	-	UPF0291 protein
BENEMHLD_01941	1.39e-40	yneF	-	-	S	ko:K09976	-	ko00000	UPF0154 protein
BENEMHLD_01942	0.0	mdlA	-	-	V	ko:K06148,ko:K18889	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_01943	0.0	mdlB	-	-	V	ko:K06147,ko:K18890	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_01944	7.66e-178	yejC	-	-	S	-	-	-	Protein of unknown function (DUF1003)
BENEMHLD_01945	1.03e-303	yhdG	-	-	E	ko:K03294	-	ko00000	Amino Acid
BENEMHLD_01946	8.45e-160	plsC	2.3.1.51	-	I	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Acyltransferase
BENEMHLD_01947	1.5e-173	yabB	2.1.1.223	-	L	ko:K07461,ko:K15460	-	ko00000,ko01000,ko03016	Methyltransferase small domain
BENEMHLD_01948	1.29e-63	yazA	-	-	L	ko:K07461	-	ko00000	GIY-YIG catalytic domain protein
BENEMHLD_01949	9.72e-182	rpsB	-	-	J	ko:K02967	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS2 family
BENEMHLD_01950	3.28e-200	tsf	-	-	J	ko:K02357	-	ko00000,ko03012,ko03029	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BENEMHLD_01951	9.72e-166	pyrH	2.7.4.22	-	F	ko:K09903	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphorylation of UMP to UDP
BENEMHLD_01952	4.96e-121	frr	-	-	J	ko:K02838	-	ko00000,ko03012	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
BENEMHLD_01953	8.24e-289	serS	6.1.1.11	-	J	ko:K01875	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BENEMHLD_01954	0.0	-	-	-	K	-	-	-	Mga helix-turn-helix domain
BENEMHLD_01955	0.0	-	-	-	K	-	-	-	Mga helix-turn-helix domain
BENEMHLD_01956	0.0	lysP	-	-	E	ko:K03293,ko:K11733	-	ko00000,ko02000	amino acid
BENEMHLD_01958	8.38e-170	budA	4.1.1.5	-	Q	ko:K01575	ko00650,ko00660,map00650,map00660	ko00000,ko00001,ko01000	Alpha-acetolactate decarboxylase
BENEMHLD_01959	0.0	alsS	2.2.1.6	-	EH	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the TPP enzyme family
BENEMHLD_01960	1.96e-126	-	-	-	-	-	-	-	-
BENEMHLD_01961	9.45e-131	yjcK	2.3.1.128	-	J	ko:K03790	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
BENEMHLD_01962	3.49e-244	-	-	-	S	-	-	-	Bacterial protein of unknown function (DUF916)
BENEMHLD_01963	8.57e-134	-	-	-	-	-	-	-	-
BENEMHLD_01964	1.43e-25	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
BENEMHLD_01965	6.89e-314	-	-	-	S	-	-	-	Fic/DOC family
BENEMHLD_01966	1.26e-209	yjbO	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
BENEMHLD_01967	3.59e-201	-	-	-	I	-	-	-	alpha/beta hydrolase fold
BENEMHLD_01968	5.53e-90	-	-	-	-	-	-	-	-
BENEMHLD_01969	8.26e-92	-	-	-	-	-	-	-	-
BENEMHLD_01970	4.37e-206	citG	2.4.2.52	-	H	ko:K05966	ko02020,map02020	ko00000,ko00001,ko01000	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase
BENEMHLD_01971	6.87e-162	citR	-	-	K	-	-	-	FCD
BENEMHLD_01972	0.0	oadA	4.1.1.3	-	C	ko:K01571	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000,ko02000	Conserved carboxylase domain
BENEMHLD_01973	4.83e-131	citX	2.7.7.61	-	HI	ko:K05964	ko02020,map02020	ko00000,ko00001,ko01000	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
BENEMHLD_01974	0.0	citF	2.8.3.10	-	H	ko:K01643	ko02020,map02020	ko00000,ko00001,ko01000	Citrate (pro-3S)-lyase alpha chain
BENEMHLD_01975	1.51e-200	citE	4.1.3.34	-	G	ko:K01644	ko02020,map02020	ko00000,ko00001,ko01000	Belongs to the HpcH HpaI aldolase family
BENEMHLD_01976	4.85e-65	citD	-	-	C	ko:K01646	ko02020,map02020	ko00000,ko00001	Covalent carrier of the coenzyme of citrate lyase
BENEMHLD_01977	2.93e-235	citC	6.2.1.22	-	H	ko:K01910	ko02020,map02020	ko00000,ko00001,ko01000	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
BENEMHLD_01978	4.63e-07	-	-	-	-	-	-	-	-
BENEMHLD_01979	1.6e-250	oadB	4.1.1.3	-	C	ko:K01572	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000,ko02000	Na+-transporting oxaloacetate decarboxylase beta subunit
BENEMHLD_01980	7.15e-58	oadG	-	-	I	-	-	-	Biotin-requiring enzyme
BENEMHLD_01981	9.87e-70	-	-	-	-	-	-	-	-
BENEMHLD_01982	2.47e-308	citM	-	-	C	ko:K03300	-	ko00000	Citrate transporter
BENEMHLD_01983	4.38e-56	-	-	-	-	-	-	-	-
BENEMHLD_01984	8.4e-132	kptA	-	-	J	ko:K07559	-	ko00000,ko01000,ko03016	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
BENEMHLD_01985	8.5e-116	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_01986	2.52e-142	-	1.5.1.40	-	S	ko:K06988	-	ko00000,ko01000	NADP oxidoreductase coenzyme F420-dependent
BENEMHLD_01987	4.99e-75	padR	-	-	K	ko:K10947	-	ko00000,ko03000	Transcriptional regulator PadR-like family
BENEMHLD_01988	1.46e-133	ORF00048	-	-	-	-	-	-	-
BENEMHLD_01989	4.47e-177	nfrA	1.5.1.38	-	C	ko:K19285	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	nitroreductase
BENEMHLD_01990	2.87e-216	ybhF_1	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_01991	0.0	-	-	-	M	ko:K01992	-	ko00000,ko00002,ko02000	Exporter of polyketide antibiotics
BENEMHLD_01992	1.25e-149	-	-	-	K	ko:K09017	-	ko00000,ko03000	Transcriptional regulator
BENEMHLD_01993	0.0	ypiB	-	-	EGP	-	-	-	Major Facilitator
BENEMHLD_01994	2.1e-163	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
BENEMHLD_01995	2.73e-240	-	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_01996	2.44e-209	-	-	-	S	-	-	-	Alpha beta hydrolase
BENEMHLD_01997	5.73e-82	lexA	-	-	K	ko:K07979	-	ko00000,ko03000	Transcriptional regulator, GntR family
BENEMHLD_01998	6.34e-166	yhcG	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_01999	1.83e-16	-	-	-	-	-	-	-	-
BENEMHLD_02000	1.47e-209	-	-	-	P	ko:K10823	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Oligopeptide/dipeptide transporter, C-terminal region
BENEMHLD_02001	5.22e-255	-	-	-	P	ko:K15583	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Oligopeptide/dipeptide transporter, C-terminal region
BENEMHLD_02002	6.34e-66	-	-	-	-	-	-	-	-
BENEMHLD_02003	3.48e-219	-	-	-	P	ko:K02034,ko:K15582	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	N-terminal TM domain of oligopeptide transport permease C
BENEMHLD_02004	5.52e-215	-	-	-	P	ko:K15581	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BENEMHLD_02005	0.0	-	-	-	E	ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Bacterial extracellular solute-binding proteins, family 5 Middle
BENEMHLD_02006	4.7e-52	-	-	-	-	-	-	-	-
BENEMHLD_02007	0.0	-	-	-	V	-	-	-	ABC transporter transmembrane region
BENEMHLD_02008	0.0	-	-	-	V	ko:K06147,ko:K06148,ko:K11085,ko:K18889	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter transmembrane region
BENEMHLD_02009	3.93e-90	-	-	-	S	-	-	-	Iron-sulphur cluster biosynthesis
BENEMHLD_02010	0.0	XK27_08510	-	-	L	-	-	-	Type III restriction protein res subunit
BENEMHLD_02011	3.21e-208	-	2.7.1.39	-	S	ko:K02204	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Phosphotransferase enzyme family
BENEMHLD_02012	8.09e-160	zmp3	-	-	O	-	-	-	Zinc-dependent metalloprotease
BENEMHLD_02013	0.0	-	-	-	M	-	-	-	LysM domain
BENEMHLD_02015	1.7e-66	lciIC	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_02016	0.0	-	-	-	L	-	-	-	Reverse transcriptase (RNA-dependent DNA polymerase)
BENEMHLD_02017	4.74e-212	murB	1.3.1.98	-	M	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation
BENEMHLD_02018	0.0	yvgP	-	-	P	ko:K03316	-	ko00000	Sodium proton antiporter
BENEMHLD_02019	4.84e-125	-	-	-	K	-	-	-	Cupin domain
BENEMHLD_02020	9.49e-262	potA	3.6.3.30, 3.6.3.31	-	P	ko:K02010,ko:K11072	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
BENEMHLD_02021	2.13e-191	potB	-	-	P	ko:K11071	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BENEMHLD_02022	7.08e-187	potC	-	-	P	ko:K11070	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BENEMHLD_02023	2.08e-267	potD	-	-	P	ko:K11069	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_02024	1.2e-119	-	-	-	S	-	-	-	Domain of unknown function (DUF5067)
BENEMHLD_02025	2.37e-79	-	-	-	-	-	-	-	-
BENEMHLD_02027	0.0	pacL	-	-	P	-	-	-	Cation transporter/ATPase, N-terminus
BENEMHLD_02028	1.96e-154	-	-	-	K	-	-	-	Transcriptional regulator
BENEMHLD_02029	3.35e-250	-	-	-	V	ko:K01992	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_02030	1.81e-168	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	AAA domain, putative AbiEii toxin, Type IV TA system
BENEMHLD_02031	2.69e-195	dacA	2.7.7.85	-	S	ko:K18672	-	ko00000,ko01000	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BENEMHLD_02032	1.04e-237	ybbR	-	-	S	-	-	-	YbbR-like protein
BENEMHLD_02033	0.0	glmM	5.4.2.10	-	G	ko:K03431	ko00520,ko01100,ko01130,map00520,map01100,map01130	ko00000,ko00001,ko01000	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BENEMHLD_02034	0.0	glmS	2.6.1.16	-	M	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	ko00000,ko00001,ko01000,ko01002	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
BENEMHLD_02035	0.0	pepF2	-	-	E	-	-	-	Oligopeptidase F
BENEMHLD_02036	1.8e-119	-	-	-	S	-	-	-	VanZ like family
BENEMHLD_02037	1.75e-170	yebC	-	-	K	-	-	-	Transcriptional regulatory protein
BENEMHLD_02038	1.71e-184	comGA	-	-	NU	ko:K02243	-	ko00000,ko00002,ko02044	Type II IV secretion system protein
BENEMHLD_02039	1.26e-216	comGB	-	-	NU	ko:K02244	-	ko00000,ko00002,ko02044	type II secretion system
BENEMHLD_02040	4.92e-65	-	-	-	-	ko:K02245	-	ko00000,ko00002,ko02044	-
BENEMHLD_02042	7.97e-71	-	-	-	-	-	-	-	-
BENEMHLD_02043	2.14e-105	-	-	-	-	ko:K02248	-	ko00000,ko00002,ko02044	-
BENEMHLD_02044	1.84e-65	-	-	-	-	-	-	-	-
BENEMHLD_02045	4.7e-238	ytxK	2.1.1.72	-	L	ko:K00571	-	ko00000,ko01000,ko02048	N-6 DNA Methylase
BENEMHLD_02046	1.35e-97	-	-	-	-	-	-	-	-
BENEMHLD_02047	1.83e-316	cycA	-	-	E	ko:K03293,ko:K11737	-	ko00000,ko02000	Amino acid permease
BENEMHLD_02048	1.07e-190	arbV	-	-	I	-	-	-	Phosphate acyltransferases
BENEMHLD_02049	2.87e-212	arbx	-	-	M	-	-	-	Glycosyl transferase family 8
BENEMHLD_02050	1.98e-234	arbY	-	-	M	-	-	-	family 8
BENEMHLD_02051	6.04e-217	arbZ	-	-	I	-	-	-	Phosphate acyltransferases
BENEMHLD_02052	0.0	rafA	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	alpha-galactosidase
BENEMHLD_02054	3.79e-92	-	-	-	S	-	-	-	SdpI/YhfL protein family
BENEMHLD_02055	2.22e-173	yclJ	-	-	K	ko:K02483	-	ko00000,ko02022	response regulator
BENEMHLD_02056	0.0	yclK	-	-	T	-	-	-	Histidine kinase
BENEMHLD_02057	1.15e-122	-	-	-	S	-	-	-	acetyltransferase
BENEMHLD_02058	2.21e-42	-	-	-	-	-	-	-	-
BENEMHLD_02059	1.49e-93	pheB	5.4.99.5	-	S	ko:K06209	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the UPF0735 family
BENEMHLD_02060	2.24e-106	-	-	-	-	-	-	-	-
BENEMHLD_02061	1.41e-77	-	-	-	-	-	-	-	-
BENEMHLD_02062	0.0	polYB	2.7.7.7	-	L	ko:K02346,ko:K03502	-	ko00000,ko01000,ko03400	Belongs to the DNA polymerase type-Y family
BENEMHLD_02064	1.14e-260	tcaA	-	-	S	ko:K21463	-	ko00000	response to antibiotic
BENEMHLD_02065	3.23e-175	-	3.1.1.5	-	E	ko:K10804	ko01040,map01040	ko00000,ko00001,ko01000,ko01004	GDSL-like Lipase/Acylhydrolase
BENEMHLD_02066	1.92e-53	-	-	-	S	-	-	-	Bacterial protein of unknown function (DUF898)
BENEMHLD_02067	0.0	pcrA	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase
BENEMHLD_02068	0.0	ligA	6.5.1.2	-	L	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	ko00000,ko00001,ko01000,ko03032,ko03400	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BENEMHLD_02069	2.76e-259	camS	-	-	S	-	-	-	sex pheromone
BENEMHLD_02070	1.26e-61	gatC	6.3.5.6, 6.3.5.7	-	J	ko:K02435	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BENEMHLD_02071	0.0	gatA	6.3.5.6, 6.3.5.7	-	J	ko:K02433	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)
BENEMHLD_02072	0.0	gatB	6.3.5.6, 6.3.5.7	-	J	ko:K02434	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko01000,ko03029	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BENEMHLD_02073	1.22e-248	dagK	2.7.1.107	-	G	ko:K07029	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko01000	Lipid kinase
BENEMHLD_02074	0.0	rumA_2	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BENEMHLD_02075	2.92e-279	mod	2.1.1.72	-	L	ko:K00571,ko:K07316	-	ko00000,ko01000,ko02048	DNA methylase
BENEMHLD_02076	0.0	res	3.1.21.5	-	L	ko:K01156	-	ko00000,ko01000,ko02048	Type III restriction enzyme, res subunit
BENEMHLD_02077	2.23e-180	ksgA	2.1.1.182, 2.1.1.197, 2.5.1.134	-	J	ko:K02169,ko:K02528,ko:K17216,ko:K17462	ko00270,ko00780,ko01100,ko01230,map00270,map00780,map01100,map01230	ko00000,ko00001,ko00002,ko01000,ko03009	rRNA (adenine-N6,N6-)-dimethyltransferase activity
BENEMHLD_02078	0.0	-	-	-	S	-	-	-	ABC transporter
BENEMHLD_02079	3.52e-225	-	3.2.2.24	-	O	ko:K05521	-	ko00000,ko01000	ADP-ribosylglycohydrolase
BENEMHLD_02080	4.32e-138	lepB	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Belongs to the peptidase S26 family
BENEMHLD_02081	5.1e-71	-	-	-	-	-	-	-	-
BENEMHLD_02082	2.7e-173	-	-	-	S	-	-	-	Protein of unknown function (DUF975)
BENEMHLD_02083	3.43e-190	-	-	-	M	-	-	-	Glycosyltransferase like family 2
BENEMHLD_02084	2.29e-175	glcR	-	-	K	ko:K22103	-	ko00000,ko03000	DeoR C terminal sensor domain
BENEMHLD_02085	2e-101	-	-	-	T	-	-	-	Sh3 type 3 domain protein
BENEMHLD_02086	7.52e-315	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
BENEMHLD_02087	6.87e-256	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
BENEMHLD_02088	0.0	pepF	-	-	E	ko:K08602	-	ko00000,ko01000,ko01002	oligoendopeptidase F
BENEMHLD_02089	1.04e-209	glxR	1.1.1.31	-	I	ko:K00020	ko00280,ko01100,map00280,map01100	ko00000,ko00001,ko01000	Dehydrogenase
BENEMHLD_02090	1.13e-215	prpA3	3.1.3.16	-	T	ko:K01090	-	ko00000,ko01000	Calcineurin-like phosphoesterase superfamily domain
BENEMHLD_02091	2.96e-173	znuB	-	-	U	ko:K02075,ko:K09816	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC 3 transport family
BENEMHLD_02092	8.68e-169	adcC	-	-	P	ko:K02074,ko:K09817,ko:K11710	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
BENEMHLD_02093	3.2e-76	-	-	-	-	-	-	-	-
BENEMHLD_02094	3.37e-250	-	-	-	S	-	-	-	Protein conserved in bacteria
BENEMHLD_02095	0.0	cps1C	-	-	S	ko:K03328	-	ko00000	Membrane protein involved in the export of O-antigen and teichoic acid
BENEMHLD_02096	5.12e-243	-	-	GT2	M	ko:K12997	-	ko00000,ko01000,ko01003,ko01005	Glycosyl transferase family 2
BENEMHLD_02097	4.14e-163	welB	-	-	S	-	-	-	Glycosyltransferase like family 2
BENEMHLD_02098	7.49e-196	-	-	-	S	-	-	-	Glycosyl transferase family 2
BENEMHLD_02099	0.0	-	-	-	S	-	-	-	O-antigen ligase like membrane protein
BENEMHLD_02100	7.99e-271	gntP	-	-	EG	ko:K03299	-	ko00000,ko02000	Gluconate
BENEMHLD_02101	0.0	gntK	2.7.1.12	-	G	ko:K00851	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko01000	Belongs to the FGGY kinase family
BENEMHLD_02102	2.98e-217	gntZ	1.1.1.343, 1.1.1.44	-	G	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Dehydrogenase
BENEMHLD_02103	9.72e-191	gntR	-	-	K	-	-	-	rpiR family
BENEMHLD_02104	1.54e-217	iolH	-	-	G	ko:K06605	-	ko00000	Xylose isomerase-like TIM barrel
BENEMHLD_02105	7.85e-209	-	5.3.99.11	-	G	ko:K06606	ko00562,ko01120,map00562,map01120	ko00000,ko00001,ko01000	Xylose isomerase-like TIM barrel
BENEMHLD_02106	1.75e-87	yodA	-	-	S	-	-	-	Tautomerase enzyme
BENEMHLD_02107	4.19e-206	iolJ	4.1.2.13, 4.1.2.29	-	G	ko:K01624,ko:K03339	ko00010,ko00030,ko00051,ko00562,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00562,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-bisphosphate aldolase class-II
BENEMHLD_02108	1.54e-224	iolE	4.2.1.44	-	G	ko:K03335	ko00562,ko01100,ko01120,map00562,map01100,map01120	ko00000,ko00001,ko01000	Catalyzes the dehydration of inosose (2-keto-myo- inositol, 2KMI or 2,4,6 3,5-pentahydroxycyclohexanone) to 3D- (3,5 4)-trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi- inositol)
BENEMHLD_02109	1.01e-250	iolG2	1.1.1.18, 1.1.1.369	-	S	ko:K00010	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130	ko00000,ko00001,ko01000	Oxidoreductase family, C-terminal alpha/beta domain
BENEMHLD_02110	1.94e-246	iolG	1.1.1.18, 1.1.1.369	-	C	ko:K00010	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130	ko00000,ko00001,ko01000	Involved in the oxidation of myo-inositol (MI) and D- chiro-inositol (DCI) to 2-keto-myo-inositol (2KMI or 2-inosose) and 1-keto-D-chiro-inositol (1KDCI), respectively
BENEMHLD_02111	0.0	iolD	3.7.1.22	-	E	ko:K03336	ko00562,ko01100,ko01120,map00562,map01100,map01120	ko00000,ko00001,ko01000	Involved in the cleavage of the C1-C2 bond of 3D- (3,5 4)-trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy- glucuronate (5DG)
BENEMHLD_02112	2.79e-228	iolC	2.7.1.92	-	H	ko:K03338	ko00562,ko01100,ko01120,map00562,map01100,map01120	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP)
BENEMHLD_02113	1.78e-202	iolB	5.3.1.30	-	G	ko:K03337	ko00562,ko01100,ko01120,map00562,map01100,map01120	ko00000,ko00001,ko01000	Involved in the isomerization of 5-deoxy-glucuronate (5DG) to 5-dehydro-2-deoxy-D-gluconate (DKG or 2-deoxy-5-keto-D- gluconate)
BENEMHLD_02114	0.0	iolA	1.2.1.18, 1.2.1.27	-	C	ko:K00140	ko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the aldehyde dehydrogenase family
BENEMHLD_02115	0.0	iolT	-	-	EGP	ko:K06609	-	ko00000,ko02000	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
BENEMHLD_02116	9.72e-183	iolR	-	-	K	ko:K06608,ko:K11534	-	ko00000,ko03000	DeoR C terminal sensor domain
BENEMHLD_02117	9.98e-212	yvgN	-	-	C	-	-	-	Aldo keto reductase
BENEMHLD_02118	3.16e-181	racD	5.1.1.13	-	G	ko:K01779	ko00250,ko01054,map00250,map01054	ko00000,ko00001,ko01000	Belongs to the aspartate glutamate racemases family
BENEMHLD_02119	0.0	murE	6.3.2.13, 6.3.2.7	-	M	ko:K01928,ko:K05362	ko00300,ko00550,ko01100,map00300,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BENEMHLD_02120	2.55e-111	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
BENEMHLD_02121	8.22e-305	dacA	3.4.16.4	-	M	ko:K01286,ko:K07258	ko00550,ko01100,map00550,map01100	ko00000,ko00001,ko01000,ko01002,ko01011	Belongs to the peptidase S11 family
BENEMHLD_02122	1.45e-280	hpk31	-	-	T	-	-	-	Histidine kinase
BENEMHLD_02123	1.68e-156	vanR	-	-	K	-	-	-	response regulator
BENEMHLD_02124	1.19e-161	-	-	-	-	-	-	-	-
BENEMHLD_02125	0.0	guaB	1.1.1.205	-	F	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides
BENEMHLD_02126	2.39e-182	-	-	-	S	-	-	-	Protein of unknown function (DUF1129)
BENEMHLD_02127	5.66e-257	ychF	-	-	J	ko:K06942	-	ko00000,ko03009	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
BENEMHLD_02128	8.4e-42	yyzM	-	-	S	-	-	-	Bacterial protein of unknown function (DUF951)
BENEMHLD_02129	1.11e-201	spo0J	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
BENEMHLD_02130	1.28e-178	soj	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	Sporulation initiation inhibitor
BENEMHLD_02131	5.2e-188	noc	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
BENEMHLD_02132	9.03e-173	rsmG	2.1.1.170	-	J	ko:K03501	-	ko00000,ko01000,ko03009,ko03036	Specifically methylates the N7 position of a guanine in 16S rRNA
BENEMHLD_02133	8.1e-87	-	-	-	-	-	-	-	-
BENEMHLD_02134	3.57e-165	cobQ	-	-	S	ko:K07009	-	ko00000	glutamine amidotransferase
BENEMHLD_02136	2.06e-137	-	1.5.1.40	-	S	ko:K06988	-	ko00000,ko01000	NADP oxidoreductase coenzyme F420-dependent
BENEMHLD_02137	8.43e-155	pcp	3.4.19.3	-	O	ko:K01304	-	ko00000,ko01000,ko01002	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
BENEMHLD_02138	0.0	-	-	-	S	-	-	-	Leucine-rich repeat (LRR) protein
BENEMHLD_02139	8.36e-74	-	-	-	-	-	-	-	-
BENEMHLD_02140	1.82e-232	-	-	-	S	-	-	-	Cell surface protein
BENEMHLD_02141	7.7e-149	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
BENEMHLD_02142	0.0	brnQ	-	-	U	ko:K03311	-	ko00000	Component of the transport system for branched-chain amino acids
BENEMHLD_02143	1.8e-181	-	-	-	-	-	-	-	-
BENEMHLD_02144	1.66e-156	tcyB	-	-	E	ko:K10009	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_02145	2.39e-186	tcyA	-	-	ET	ko:K02424	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko02035	Belongs to the bacterial solute-binding protein 3 family
BENEMHLD_02146	3.66e-274	mccB	4.4.1.1, 4.4.1.2, 4.4.1.8	-	E	ko:K01760,ko:K17217	ko00260,ko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00260,map00270,map00450,map00920,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	cystathionine
BENEMHLD_02148	4.85e-184	-	-	-	-	-	-	-	-
BENEMHLD_02150	4.43e-222	cysK	2.5.1.47	-	E	ko:K01738	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the cysteine synthase cystathionine beta- synthase family
BENEMHLD_02151	2.35e-209	metA	2.3.1.46	-	E	ko:K00651	ko00270,ko00920,ko01100,ko01110,ko01230,map00270,map00920,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Transfers an acetyl group from acetyl-CoA to
BENEMHLD_02152	9.58e-214	aroE	1.1.1.25	-	E	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BENEMHLD_02153	4.17e-280	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
BENEMHLD_02155	3.88e-206	aroE	1.1.1.25	-	E	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BENEMHLD_02156	4.69e-199	-	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl-(Acyl carrier protein) reductase
BENEMHLD_02157	1.04e-214	-	-	-	G	-	-	-	Xylose isomerase-like TIM barrel
BENEMHLD_02158	2.45e-213	-	-	-	K	-	-	-	Transcriptional regulator, LysR family
BENEMHLD_02159	1.66e-121	-	-	-	S	ko:K08996	-	ko00000	Protein of unknown function (DUF1440)
BENEMHLD_02160	3.85e-314	xylP	-	-	G	-	-	-	MFS/sugar transport protein
BENEMHLD_02161	0.0	ycaM	-	-	E	-	-	-	amino acid
BENEMHLD_02162	0.0	pepN	3.4.11.2	-	E	ko:K01256	ko00480,ko01100,map00480,map01100	ko00000,ko00001,ko01000,ko01002	aminopeptidase
BENEMHLD_02164	2.22e-138	-	-	-	-	-	-	-	-
BENEMHLD_02165	2.5e-259	-	-	-	-	ko:K01992	-	ko00000,ko00002,ko02000	-
BENEMHLD_02166	9.17e-210	-	-	-	V	-	-	-	ATPases associated with a variety of cellular activities
BENEMHLD_02167	1.15e-259	-	2.7.13.3	-	T	ko:K20487	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BENEMHLD_02168	4.87e-164	-	-	-	K	ko:K20488	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	Transcriptional regulatory protein, C terminal
BENEMHLD_02169	0.0	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
BENEMHLD_02170	1.49e-167	XK27_12140	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_02171	7.2e-261	-	-	-	-	-	-	-	-
BENEMHLD_02172	3.91e-166	-	-	-	S	ko:K07090	-	ko00000	membrane transporter protein
BENEMHLD_02173	9.54e-78	ydeP	-	-	K	-	-	-	Transcriptional regulator, HxlR family
BENEMHLD_02174	3.95e-252	qor	1.1.1.1, 1.6.5.5	-	C	ko:K00001,ko:K00344	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220	ko00000,ko00001,ko01000	Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily
BENEMHLD_02175	2.26e-209	-	-	-	S	-	-	-	reductase
BENEMHLD_02176	7.73e-99	-	-	-	K	-	-	-	helix_turn_helix, mercury resistance
BENEMHLD_02178	0.0	-	-	-	E	-	-	-	Amino acid permease
BENEMHLD_02179	6.98e-289	-	-	-	S	ko:K07045	-	ko00000	Amidohydrolase
BENEMHLD_02180	0.0	-	6.3.1.2	-	E	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	ko00000,ko00001,ko01000,ko04147	Glutamine synthetase N-terminal domain
BENEMHLD_02182	4.01e-184	puuD	-	-	S	ko:K07010	-	ko00000,ko01002	peptidase C26
BENEMHLD_02184	1.46e-183	-	-	-	H	-	-	-	Protein of unknown function (DUF1698)
BENEMHLD_02185	1e-248	ykfB	5.1.1.20	-	M	ko:K19802	-	ko00000,ko01000	Belongs to the mandelate racemase muconate lactonizing enzyme family
BENEMHLD_02186	6.29e-135	pbpE	-	-	V	-	-	-	Beta-lactamase
BENEMHLD_02187	8.69e-92	pbpX	-	-	V	-	-	-	Beta-lactamase
BENEMHLD_02188	1.01e-61	-	-	-	-	-	-	-	-
BENEMHLD_02189	0.0	cidC	1.2.3.3	-	EH	ko:K00158	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000	Belongs to the TPP enzyme family
BENEMHLD_02190	7.61e-215	fba	4.1.2.13, 4.1.2.29	-	G	ko:K01624,ko:K03339	ko00010,ko00030,ko00051,ko00562,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00562,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-1,6-bisphosphate aldolase, class II
BENEMHLD_02191	3.42e-45	-	-	-	-	-	-	-	-
BENEMHLD_02192	2.37e-140	tag	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	glycosylase
BENEMHLD_02193	4.89e-263	yceJ	-	-	EGP	ko:K08221	-	ko00000,ko02000	transporter
BENEMHLD_02194	1.04e-64	yczG	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_02195	1.6e-58	-	-	-	L	-	-	-	RelB antitoxin
BENEMHLD_02196	0.0	-	-	-	L	-	-	-	Exonuclease
BENEMHLD_02197	7.3e-245	mocA	-	-	S	-	-	-	Oxidoreductase
BENEMHLD_02198	1.51e-77	-	-	-	L	-	-	-	Putative transposase of IS4/5 family (DUF4096)
BENEMHLD_02199	8.37e-108	-	-	-	L	-	-	-	Transposase DDE domain
BENEMHLD_02200	0.0	tagE	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
BENEMHLD_02201	0.0	-	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
BENEMHLD_02203	0.0	-	2.4.1.9, 3.4.24.40	GH68	M	ko:K01406,ko:K20811	ko00500,ko01503,map00500,map01503	ko00000,ko00001,ko01000,ko01002	domain protein
BENEMHLD_02205	0.0	-	-	-	-	-	-	-	-
BENEMHLD_02206	0.0	-	-	-	-	-	-	-	-
BENEMHLD_02207	3.62e-246	-	-	-	-	-	-	-	-
BENEMHLD_02208	4.53e-197	hutG	3.5.3.8	-	E	ko:K01479	ko00340,ko01100,map00340,map01100	ko00000,ko00001,ko00002,ko01000	N-formylglutamate amidohydrolase
BENEMHLD_02209	8.85e-72	XK27_08430	-	-	S	-	-	-	Staphylococcal protein of unknown function (DUF960)
BENEMHLD_02210	2.18e-117	ybaK	-	-	S	ko:K03976	-	ko00000,ko01000,ko03016	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BENEMHLD_02211	1.2e-123	apt	2.4.2.7	-	F	ko:K00759	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko01000,ko04147	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BENEMHLD_02212	0.0	recJ	-	-	L	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	ko00000,ko00001,ko01000,ko03400	Single-stranded-DNA-specific exonuclease RecJ
BENEMHLD_02213	2.01e-81	-	-	-	-	-	-	-	-
BENEMHLD_02214	7.13e-110	-	-	-	S	-	-	-	ASCH
BENEMHLD_02215	6.91e-45	-	-	-	-	-	-	-	-
BENEMHLD_02216	0.0	lepA	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
BENEMHLD_02217	6.01e-268	dnaJ	-	-	O	ko:K03686	-	ko00000,ko03029,ko03110	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
BENEMHLD_02218	0.0	dnaK	-	-	O	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Heat shock 70 kDa protein
BENEMHLD_02219	5.93e-128	grpE	-	-	O	ko:K03687	-	ko00000,ko03029,ko03110	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BENEMHLD_02220	2.27e-246	hrcA	-	-	K	ko:K03705	-	ko00000,ko03000	Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
BENEMHLD_02222	8.81e-288	hemN	-	-	H	-	-	-	Involved in the biosynthesis of porphyrin-containing compound
BENEMHLD_02223	1.89e-226	ribF	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the ribF family
BENEMHLD_02224	1.65e-213	truB	5.4.99.25	-	J	ko:K03177,ko:K03483	-	ko00000,ko01000,ko03000,ko03016	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BENEMHLD_02225	1.91e-152	yceF	-	-	P	ko:K05794	-	ko00000	membrane
BENEMHLD_02226	1.27e-76	rbfA	-	-	J	ko:K02834	-	ko00000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BENEMHLD_02227	0.0	infB	-	-	J	ko:K02519	-	ko00000,ko03012,ko03029	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BENEMHLD_02228	1.85e-59	ylxQ	-	-	J	-	-	-	ribosomal protein
BENEMHLD_02229	2.02e-62	ylxR	-	-	K	ko:K07742	-	ko00000	Protein of unknown function (DUF448)
BENEMHLD_02230	4.49e-278	nusA	-	-	K	ko:K02600	-	ko00000,ko03009,ko03021	Participates in both transcription termination and antitermination
BENEMHLD_02231	3.81e-110	rimP	-	-	J	ko:K09748	-	ko00000,ko03009	Required for maturation of 30S ribosomal subunits
BENEMHLD_02232	0.0	polC	2.7.7.7	-	L	ko:K03763	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BENEMHLD_02233	0.0	proS	6.1.1.15	-	J	ko:K01881	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS
BENEMHLD_02234	3.52e-292	rseP	-	-	M	ko:K11749	ko02024,ko04112,map02024,map04112	ko00000,ko00001,ko01000,ko01002	zinc metalloprotease
BENEMHLD_02235	4.82e-182	cdsA	2.7.7.41	-	S	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the CDS family
BENEMHLD_02236	3.69e-180	uppS	2.5.1.31	-	H	ko:K00806	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BENEMHLD_02237	5.89e-162	rpiA	5.3.1.6	-	G	ko:K01807	ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BENEMHLD_02238	4.19e-65	-	-	-	-	-	-	-	-
BENEMHLD_02239	0.0	-	3.2.1.122	GH4	G	ko:K01232	ko00500,map00500	ko00000,ko00001,ko01000	Family 4 glycosyl hydrolase C-terminal domain
BENEMHLD_02240	0.0	-	2.7.1.199, 2.7.1.208	-	G	ko:K02790,ko:K02791	ko00010,ko00500,ko00520,ko02060,map00010,map00500,map00520,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	phosphotransferase system, EIIB
BENEMHLD_02242	1.5e-168	-	-	-	K	-	-	-	Helix-turn-helix domain, rpiR family
BENEMHLD_02243	3e-108	ptbA	2.7.1.208	-	G	ko:K02755,ko:K02777,ko:K20107,ko:K20108	ko00010,ko00500,ko00520,ko02026,ko02060,ko05111,map00010,map00500,map00520,map02026,map02060,map05111	ko00000,ko00001,ko00002,ko01000,ko02000	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
BENEMHLD_02245	4.82e-178	-	4.1.2.14	-	S	ko:K17463	ko00030,ko01100,ko01120,map00030,map01100,map01120	ko00000,ko00001,ko00002,ko01000	KDGP aldolase
BENEMHLD_02246	1.3e-261	selA	2.9.1.1	-	H	ko:K01042	ko00450,ko00970,map00450,map00970	ko00000,ko00001,ko01000	L-seryl-tRNA selenium transferase
BENEMHLD_02247	1.28e-276	dho	3.5.2.3	-	S	ko:K01465	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Amidohydrolase family
BENEMHLD_02248	3.36e-153	-	-	-	S	-	-	-	Domain of unknown function (DUF4310)
BENEMHLD_02249	2.89e-177	-	-	-	S	-	-	-	Domain of unknown function (DUF4311)
BENEMHLD_02250	1.66e-75	-	-	-	S	-	-	-	Domain of unknown function (DUF4312)
BENEMHLD_02251	1.23e-80	-	-	-	S	-	-	-	Glycine-rich SFCGS
BENEMHLD_02252	1.39e-72	-	-	-	S	-	-	-	PRD domain
BENEMHLD_02253	0.0	-	-	-	K	-	-	-	Mga helix-turn-helix domain
BENEMHLD_02254	2.06e-159	-	-	-	H	-	-	-	Pfam:Transaldolase
BENEMHLD_02255	8.61e-85	-	2.7.1.198	-	G	ko:K02781	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system glucitol/sorbitol-specific IIA component
BENEMHLD_02256	3.4e-255	srlE	2.7.1.198	-	G	ko:K02782,ko:K02783	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Sorbitol phosphotransferase enzyme II N-terminus
BENEMHLD_02257	1.43e-131	srlA	-	-	G	ko:K02783	ko00051,ko02060,map00051,map02060	ko00000,ko00001,ko00002,ko02000	PTS system enzyme II sorbitol-specific factor
BENEMHLD_02258	1.52e-114	srlM1	-	-	K	-	-	-	Glucitol operon activator protein (GutM)
BENEMHLD_02259	0.0	srlM	-	-	GKT	ko:K03491	-	ko00000,ko03000	Mga helix-turn-helix domain
BENEMHLD_02260	2.05e-185	srlD	1.1.1.140	-	IQ	ko:K00068	ko00051,map00051	ko00000,ko00001,ko01000	NAD dependent epimerase/dehydratase family
BENEMHLD_02261	1.83e-176	araD	5.1.3.4	-	G	ko:K03077	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
BENEMHLD_02262	1.76e-194	-	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
BENEMHLD_02263	3.1e-215	sga	5.1.3.22	-	G	ko:K03079	ko00040,ko00053,ko01100,ko01120,map00040,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Xylose isomerase-like TIM barrel
BENEMHLD_02264	3.66e-177	-	-	-	K	-	-	-	DeoR C terminal sensor domain
BENEMHLD_02265	3.7e-148	ulaD	4.1.1.85, 4.1.2.43	-	G	ko:K03078,ko:K08093	ko00030,ko00040,ko00053,ko00680,ko01100,ko01120,ko01200,ko01230,map00030,map00040,map00053,map00680,map01100,map01120,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Orotidine 5'-phosphate decarboxylase / HUMPS family
BENEMHLD_02266	6.78e-61	sgaB	2.7.1.194	-	G	ko:K02822	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_02267	0.0	sgaT	-	-	S	ko:K03475	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
BENEMHLD_02268	4.19e-106	-	2.7.1.194	-	G	ko:K02821	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_02269	3.1e-273	ulaG	-	-	S	ko:K03476	ko00053,ko01100,ko01120,map00053,map01100,map01120	ko00000,ko00001,ko00002,ko01000	Beta-lactamase superfamily domain
BENEMHLD_02270	0.0	prtP	3.4.21.96	-	O	ko:K01361	-	ko00000,ko01000,ko01002,ko03110	Belongs to the peptidase S8 family
BENEMHLD_02271	9.75e-59	-	-	-	-	-	-	-	-
BENEMHLD_02272	3.17e-205	-	-	-	GK	-	-	-	ROK family
BENEMHLD_02273	1.57e-232	asnA2	3.5.1.1	-	E	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110	ko00000,ko00001,ko01000	Asparaginase
BENEMHLD_02274	0.0	-	-	-	E	-	-	-	Peptidase family M20/M25/M40
BENEMHLD_02275	1.5e-169	-	-	-	K	ko:K03710	-	ko00000,ko03000	UTRA
BENEMHLD_02276	4.11e-273	-	-	-	EGP	-	-	-	Transporter, major facilitator family protein
BENEMHLD_02277	2.07e-265	-	3.2.1.51	GH29	G	ko:K01206	ko00511,map00511	ko00000,ko00001,ko01000,ko04147	Alpha-L-fucosidase
BENEMHLD_02278	3.55e-127	-	-	-	S	-	-	-	Domain of unknown function (DUF4428)
BENEMHLD_02279	0.0	-	2.7.1.17, 2.7.1.53	-	G	ko:K00854,ko:K00880	ko00040,ko00053,ko01100,map00040,map00053,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the FGGY kinase family
BENEMHLD_02280	5.92e-262	-	1.1.1.14	-	C	ko:K00008	ko00040,ko00051,ko01100,map00040,map00051,map01100	ko00000,ko00001,ko00002,ko01000	Zinc-binding dehydrogenase
BENEMHLD_02281	1.71e-199	-	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system mannose/fructose/sorbose family IID component
BENEMHLD_02282	4.28e-177	-	-	-	G	ko:K02795	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sorbose-specific iic component
BENEMHLD_02283	1.97e-107	-	2.7.1.191	-	G	ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
BENEMHLD_02284	1.25e-93	ahaA	2.7.1.191	-	G	ko:K02793	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system fructose IIA component
BENEMHLD_02285	1.17e-64	-	-	-	K	ko:K03491	-	ko00000,ko03000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_02286	8.98e-86	rpsI	-	-	J	ko:K02996	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS9 family
BENEMHLD_02287	4.23e-104	rplM	-	-	J	ko:K02871	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BENEMHLD_02288	4.31e-136	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_02289	1.06e-237	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	FtsX-like permease family
BENEMHLD_02290	9.39e-167	lolD	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_02291	1.28e-45	-	-	-	-	-	-	-	-
BENEMHLD_02292	6.34e-178	tipA	-	-	K	-	-	-	TipAS antibiotic-recognition domain
BENEMHLD_02293	6.9e-179	truA	5.4.99.12	-	J	ko:K06173	-	ko00000,ko01000,ko03016	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
BENEMHLD_02294	5.43e-185	ecfT	-	-	U	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BENEMHLD_02295	4.3e-203	ecfA2	-	-	P	ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BENEMHLD_02296	3.44e-199	ecfA1	-	-	P	ko:K16786	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BENEMHLD_02297	5.68e-156	-	-	-	-	-	-	-	-
BENEMHLD_02298	2.94e-80	rplQ	-	-	J	ko:K02879	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L17
BENEMHLD_02299	1.8e-218	rpoA	2.7.7.6	-	K	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BENEMHLD_02300	3.82e-82	rpsK	-	-	J	ko:K02948	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BENEMHLD_02301	2.66e-76	rpsM	-	-	J	ko:K02952	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BENEMHLD_02302	6.38e-20	rpmJ	-	-	J	ko:K02919	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL36 family
BENEMHLD_02303	4.15e-46	infA	-	-	J	ko:K02518	-	ko00000,ko03012	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BENEMHLD_02304	3.86e-157	adk	2.7.4.3	-	F	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
BENEMHLD_02305	1.15e-297	secY	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
BENEMHLD_02306	1.42e-92	rplO	-	-	J	ko:K02876	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to the 23S rRNA
BENEMHLD_02307	1.83e-33	rpmD	-	-	J	ko:K02907	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L30
BENEMHLD_02308	8.15e-109	rpsE	-	-	J	ko:K02988	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BENEMHLD_02309	5.63e-77	rplR	-	-	J	ko:K02881	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BENEMHLD_02310	3.7e-123	rplF	-	-	J	ko:K02933	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BENEMHLD_02311	1.32e-88	rpsH	-	-	J	ko:K02994	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BENEMHLD_02312	1.23e-123	rplE	-	-	J	ko:K02931	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BENEMHLD_02313	1.67e-66	rplX	-	-	J	ko:K02895	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BENEMHLD_02314	1.73e-77	rplN	-	-	J	ko:K02874	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BENEMHLD_02315	1.7e-54	rpsQ	-	-	J	ko:K02961	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BENEMHLD_02316	4.53e-33	rpmC	-	-	J	ko:K02904	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uL29 family
BENEMHLD_02317	1.96e-98	rplP	-	-	J	ko:K02878	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BENEMHLD_02318	2.92e-153	rpsC	-	-	J	ko:K02982	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BENEMHLD_02319	4.5e-73	rplV	-	-	J	ko:K02890	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BENEMHLD_02320	5.26e-63	rpsS	-	-	J	ko:K02965	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BENEMHLD_02321	2.07e-200	rplB	-	-	J	ko:K02886	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BENEMHLD_02322	5.07e-62	rplW	-	-	J	ko:K02892	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
BENEMHLD_02323	1.7e-141	rplD	-	-	J	ko:K02926	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the polypeptide exit tunnel
BENEMHLD_02324	1.4e-146	rplC	-	-	J	ko:K02906	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BENEMHLD_02325	1.09e-66	rpsJ	-	-	J	ko:K02946	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Involved in the binding of tRNA to the ribosomes
BENEMHLD_02326	1.26e-90	psiE	-	-	S	ko:K13256	-	ko00000	Phosphate-starvation-inducible E
BENEMHLD_02327	5.85e-139	ahpC	1.11.1.15	-	O	ko:K03386	ko04214,map04214	ko00000,ko00001,ko01000,ko04147	C-terminal domain of 1-Cys peroxiredoxin
BENEMHLD_02328	7.4e-254	-	-	-	K	-	-	-	WYL domain
BENEMHLD_02329	0.0	fusA	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BENEMHLD_02330	2.06e-108	rpsG	-	-	J	ko:K02992	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
BENEMHLD_02331	3.18e-92	rpsL	-	-	J	ko:K02950	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BENEMHLD_02332	1.21e-110	-	3.4.23.43	-	-	ko:K02236	-	ko00000,ko00002,ko01000,ko02044	-
BENEMHLD_02333	0.0	rpoC	2.7.7.6	-	K	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BENEMHLD_02334	0.0	rpoB	2.7.7.6	-	K	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BENEMHLD_02335	0.0	clpC	-	-	O	ko:K03696	ko01100,map01100	ko00000,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
BENEMHLD_02336	7.17e-104	ctsR	-	-	K	ko:K03708	-	ko00000,ko03000	Belongs to the CtsR family
BENEMHLD_02346	4.93e-283	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
BENEMHLD_02347	5.33e-103	-	-	-	M	-	-	-	Glycosyl hydrolases family 25
BENEMHLD_02348	2.26e-210	rfbA	2.7.7.24	-	H	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BENEMHLD_02349	1.55e-140	rfbC	5.1.3.13	-	M	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
BENEMHLD_02350	3.55e-260	rfbB	4.2.1.46	-	M	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
BENEMHLD_02351	1.93e-206	rfbD	1.1.1.133	-	M	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
BENEMHLD_02352	1.16e-119	-	-	-	-	-	-	-	-
BENEMHLD_02353	4.9e-315	-	-	-	-	-	-	-	-
BENEMHLD_02354	3.45e-315	-	-	-	-	-	-	-	-
BENEMHLD_02355	2.08e-144	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
BENEMHLD_02356	1.44e-127	mnaA	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the UDP-N-acetylglucosamine 2-epimerase family
BENEMHLD_02357	2.84e-201	nodB3	-	-	G	-	-	-	Polysaccharide deacetylase
BENEMHLD_02358	1.12e-304	hflX	-	-	S	ko:K03665	-	ko00000,ko03009	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BENEMHLD_02359	7.89e-213	-	-	-	I	-	-	-	Diacylglycerol kinase catalytic domain
BENEMHLD_02360	0.0	-	-	-	E	-	-	-	Amino Acid
BENEMHLD_02361	3.26e-175	cysA	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_02362	0.0	-	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	FtsX-like permease family
BENEMHLD_02363	1.76e-220	rhaD	4.1.2.19	-	H	ko:K01629	ko00040,ko00051,ko01120,map00040,map00051,map01120	ko00000,ko00001,ko01000	Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde
BENEMHLD_02364	4.02e-165	gpm2	-	-	G	-	-	-	Phosphoglycerate mutase family
BENEMHLD_02365	3.19e-238	hemH	4.99.1.1, 4.99.1.9	-	H	ko:K01772	ko00860,ko01100,ko01110,map00860,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the ferrous insertion into protoporphyrin IX
BENEMHLD_02366	6.51e-305	mntH	-	-	P	ko:K03322	-	ko00000,ko02000	H( )-stimulated, divalent metal cation uptake system
BENEMHLD_02367	3.31e-108	yjhE	-	-	S	-	-	-	Phage tail protein
BENEMHLD_02368	3.98e-230	pepR	3.4.11.5	-	E	ko:K01259	ko00330,map00330	ko00000,ko00001,ko01000,ko01002	Releases the N-terminal proline from various substrates
BENEMHLD_02369	0.0	yjbQ	-	-	P	ko:K03455,ko:K03499	-	ko00000,ko02000	TrkA C-terminal domain protein
BENEMHLD_02370	1.82e-37	-	-	-	-	-	-	-	-
BENEMHLD_02371	0.0	helD	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	DNA helicase
BENEMHLD_02372	1.44e-109	ykhA	3.1.2.20	-	I	ko:K01073	-	ko00000,ko01000	Thioesterase superfamily
BENEMHLD_02373	0.0	pepDA	-	-	E	ko:K08659	-	ko00000,ko01000,ko01002	Dipeptidase
BENEMHLD_02374	3.82e-57	-	-	-	-	-	-	-	-
BENEMHLD_02375	1.99e-71	-	-	-	-	-	-	-	-
BENEMHLD_02376	3.82e-227	coaA	2.7.1.33	-	F	ko:K00867	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Pantothenic acid kinase
BENEMHLD_02377	0.0	guaA	6.3.5.2	-	F	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the synthesis of GMP from XMP
BENEMHLD_02380	1.27e-123	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_02381	1.6e-145	-	-	-	S	-	-	-	Flavodoxin-like fold
BENEMHLD_02383	3.13e-81	-	-	-	-	-	-	-	-
BENEMHLD_02384	3.45e-37	-	-	-	-	-	-	-	-
BENEMHLD_02385	6.37e-85	-	-	-	S	-	-	-	Protein of unknown function (DUF1093)
BENEMHLD_02386	1.1e-50	-	-	-	-	-	-	-	-
BENEMHLD_02387	2.26e-143	-	3.2.2.21	-	L	ko:K03652	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Belongs to the DNA glycosylase MPG family
BENEMHLD_02388	2.1e-114	XK27_03960	-	-	S	-	-	-	Protein of unknown function (DUF3013)
BENEMHLD_02389	4.61e-222	prmA	-	-	J	ko:K02687	-	ko00000,ko01000,ko03009	Ribosomal protein L11 methyltransferase
BENEMHLD_02390	2.69e-169	rsmE	2.1.1.193	-	J	ko:K09761	-	ko00000,ko01000,ko03009	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
BENEMHLD_02391	1.46e-71	-	-	-	-	-	-	-	-
BENEMHLD_02392	0.0	relA	2.7.6.5	-	KT	ko:K00951	ko00230,map00230	ko00000,ko00001,ko01000	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BENEMHLD_02393	9.21e-99	dtd	-	-	J	ko:K07560	-	ko00000,ko01000,ko03016	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
BENEMHLD_02394	2.63e-150	-	-	-	J	-	-	-	HAD-hyrolase-like
BENEMHLD_02395	0.0	lytH	3.5.1.28	-	M	ko:K01448	ko01503,map01503	ko00000,ko00001,ko00002,ko01000,ko01011,ko03036	N-acetylmuramoyl-L-alanine amidase
BENEMHLD_02396	2.26e-108	-	-	-	FG	-	-	-	adenosine 5'-monophosphoramidase activity
BENEMHLD_02397	2.51e-203	-	-	-	V	-	-	-	ABC transporter
BENEMHLD_02398	0.0	-	-	-	-	-	-	-	-
BENEMHLD_02399	4.43e-309	hisS	6.1.1.21	-	J	ko:K01892	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	histidyl-tRNA synthetase
BENEMHLD_02400	0.0	aspS	6.1.1.12	-	J	ko:K01876	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
BENEMHLD_02401	4.4e-106	msrB	1.8.4.12	-	O	ko:K07305	-	ko00000,ko01000	peptide methionine sulfoxide reductase
BENEMHLD_02402	7.61e-217	yitT	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BENEMHLD_02403	4.59e-217	nfo	3.1.21.2	-	L	ko:K01151	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
BENEMHLD_02404	4.18e-199	yqfL	2.7.11.33, 2.7.4.28	-	F	ko:K09773	-	ko00000,ko01000	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation
BENEMHLD_02405	5.66e-29	rpsU	-	-	J	ko:K02970	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bS21 family
BENEMHLD_02406	1.47e-90	yqeY	-	-	S	ko:K09117	-	ko00000	YqeY-like protein
BENEMHLD_02407	1.14e-229	phoH	-	-	T	ko:K06217	-	ko00000	phosphate starvation-inducible protein PhoH
BENEMHLD_02408	2.52e-107	ybeY	-	-	S	ko:K07042	-	ko00000,ko03009	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BENEMHLD_02409	4.25e-85	dgkA	2.7.1.107, 2.7.1.66	-	M	ko:K00887,ko:K00901	ko00550,ko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00550,map00561,map00564,map01100,map01110,map04070,map04072,map05231	ko00000,ko00001,ko01000	Diacylglycerol kinase
BENEMHLD_02410	8.35e-84	cdd	3.5.4.5	-	F	ko:K01489	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis
BENEMHLD_02411	2.36e-217	era	-	-	S	ko:K03595	-	ko00000,ko03009,ko03029	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BENEMHLD_02412	2.67e-192	recO	-	-	L	ko:K03584	ko03440,map03440	ko00000,ko00001,ko03400	Involved in DNA repair and RecF pathway recombination
BENEMHLD_02413	9.27e-73	-	-	-	-	-	-	-	-
BENEMHLD_02414	1.61e-163	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_02416	1.45e-124	-	2.3.1.128	-	J	ko:K03790	-	ko00000,ko01000,ko03009	Acetyltransferase (GNAT) domain
BENEMHLD_02419	7.26e-11	-	-	-	S	-	-	-	HNH endonuclease
BENEMHLD_02420	6.53e-172	-	-	-	-	-	-	-	-
BENEMHLD_02421	1.08e-88	-	-	-	L	-	-	-	Single-strand binding protein family
BENEMHLD_02422	4.33e-105	-	-	-	V	-	-	-	HNH nucleases
BENEMHLD_02425	1.37e-94	-	-	-	K	-	-	-	Transcriptional regulator
BENEMHLD_02426	2.6e-101	infC	-	-	J	ko:K02520	-	ko00000,ko03012,ko03029	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BENEMHLD_02427	1.13e-36	rpmI	-	-	J	ko:K02916	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL35 family
BENEMHLD_02428	1.44e-74	rplT	-	-	J	ko:K02887	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BENEMHLD_02429	2.88e-130	-	3.2.2.10	-	S	ko:K06966	ko00230,ko00240,map00230,map00240	ko00000,ko00001,ko01000	Belongs to the LOG family
BENEMHLD_02430	7.45e-232	-	-	-	C	-	-	-	Alcohol dehydrogenase GroES-like domain
BENEMHLD_02431	2.16e-156	mhqD	-	-	S	ko:K06999	-	ko00000	Dienelactone hydrolase family
BENEMHLD_02432	2.35e-244	mhqA_2	-	-	E	ko:K15975	-	ko00000	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BENEMHLD_02433	2.58e-225	ykcA	-	-	E	-	-	-	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BENEMHLD_02434	4.16e-125	yqeG	-	-	S	ko:K07015	-	ko00000	HAD phosphatase, family IIIA
BENEMHLD_02435	1.96e-276	yqeH	-	-	S	ko:K06948	-	ko00000,ko03009	Ribosome biogenesis GTPase YqeH
BENEMHLD_02436	1.61e-64	yhbY	-	-	J	ko:K07574	-	ko00000,ko03009	RNA-binding protein
BENEMHLD_02437	1.19e-150	nadD	2.7.7.18	-	H	ko:K00969	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BENEMHLD_02438	9.21e-142	yqeK	-	-	H	-	-	-	Hydrolase, HD family
BENEMHLD_02439	1.68e-78	rsfS	-	-	J	ko:K09710	-	ko00000,ko03009	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
BENEMHLD_02440	1.24e-180	yqeM	-	-	Q	-	-	-	Methyltransferase
BENEMHLD_02441	2.37e-270	ylbM	-	-	S	-	-	-	Belongs to the UPF0348 family
BENEMHLD_02442	8.69e-127	ylbN	-	-	S	ko:K07040	-	ko00000	Uncharacterized ACR, COG1399
BENEMHLD_02444	4.98e-24	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
BENEMHLD_02445	2.82e-302	-	-	-	L	-	-	-	Probable transposase
BENEMHLD_02446	2.42e-178	-	-	-	M	-	-	-	Peptidase family M23
BENEMHLD_02447	0.0	gnd	1.1.1.343, 1.1.1.44	-	H	ko:K00033	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
BENEMHLD_02448	1.01e-157	csrR	-	-	K	-	-	-	response regulator
BENEMHLD_02449	0.0	arlS	2.7.13.3	-	T	ko:K18940	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
BENEMHLD_02450	9.37e-230	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins
BENEMHLD_02451	4.33e-62	acyP	3.6.1.7	-	C	ko:K01512	ko00620,ko00627,ko01120,map00620,map00627,map01120	ko00000,ko00001,ko01000	Belongs to the acylphosphatase family
BENEMHLD_02452	7.41e-177	spoU	-	-	J	ko:K03437	-	ko00000,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BENEMHLD_02453	3.09e-122	XK27_09705	-	-	S	ko:K06950	-	ko00000	Metal dependent phosphohydrolases with conserved 'HD' motif.
BENEMHLD_02454	1.44e-90	yodB	-	-	K	-	-	-	Transcriptional regulator, HxlR family
BENEMHLD_02455	4.32e-260	pheS	6.1.1.20	-	J	ko:K01889	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BENEMHLD_02456	0.0	pheT	6.1.1.20	-	J	ko:K01890	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
BENEMHLD_02457	1.17e-268	mltG	-	-	S	ko:K07082	-	ko00000	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BENEMHLD_02458	1.45e-149	udk	2.7.1.48	-	F	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Cytidine monophosphokinase
BENEMHLD_02459	6.1e-101	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
BENEMHLD_02460	3.99e-167	yvqF	-	-	S	ko:K11622	ko02020,map02020	ko00000,ko00001	Cell wall-active antibiotics response 4TMS YvqF
BENEMHLD_02461	4.83e-235	vraS	2.7.13.3	-	T	ko:K07681,ko:K11617	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
BENEMHLD_02462	8.32e-149	vraR	-	-	K	ko:K07694,ko:K11618	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	helix_turn_helix, Lux Regulon
BENEMHLD_02463	1.91e-70	yneR	-	-	S	-	-	-	Belongs to the HesB IscA family
BENEMHLD_02464	0.0	-	-	-	S	-	-	-	Bacterial membrane protein YfhO
BENEMHLD_02465	1.46e-57	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
BENEMHLD_02466	8.41e-172	-	-	-	S	-	-	-	Putative threonine/serine exporter
BENEMHLD_02467	5.92e-97	-	-	-	S	-	-	-	Threonine/Serine exporter, ThrE
BENEMHLD_02468	5.62e-274	livJ	-	-	E	ko:K01999	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Receptor family ligand binding region
BENEMHLD_02469	5.16e-192	livH	-	-	U	ko:K01997	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Branched-chain amino acid transport system / permease component
BENEMHLD_02470	8.13e-185	livM	-	-	E	ko:K01997,ko:K01998	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Branched-chain amino acid transport system / permease component
BENEMHLD_02471	1.74e-179	livG	-	-	E	ko:K01995	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	Branched-chain amino acid ATP-binding cassette transporter
BENEMHLD_02472	4.25e-160	livF	-	-	E	ko:K01996	ko02010,ko02024,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter
BENEMHLD_02473	5.08e-72	-	-	-	S	-	-	-	MazG nucleotide pyrophosphohydrolase domain
BENEMHLD_02474	5.34e-214	-	-	-	S	-	-	-	Alpha/beta hydrolase of unknown function (DUF915)
BENEMHLD_02475	1.66e-305	pts14C	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BENEMHLD_02476	1.99e-148	deoC	4.1.2.4	-	F	ko:K01619	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BENEMHLD_02477	6.82e-295	deoB	5.4.2.7	-	G	ko:K01839	ko00030,ko00230,map00030,map00230	ko00000,ko00001,ko01000	Phosphotransfer between the C1 and C5 carbon atoms of pentose
BENEMHLD_02478	5.43e-167	deoD	2.4.2.1	-	F	ko:K03784	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Purine nucleoside phosphorylase
BENEMHLD_02479	1.09e-217	p75	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC P60 family protein
BENEMHLD_02480	0.0	nox	1.6.3.4	-	C	ko:K17869	-	ko00000,ko01000	NADH oxidase
BENEMHLD_02481	1.16e-208	-	-	-	-	-	-	-	-
BENEMHLD_02482	1.38e-154	-	-	-	-	-	-	-	-
BENEMHLD_02483	0.0	uvrB3	3.1.12.1	-	KL	ko:K07464	-	ko00000,ko01000,ko02048	DEAD_2
BENEMHLD_02484	3.35e-305	-	-	-	G	ko:K02027	-	ko00000,ko00002,ko02000	Bacterial extracellular solute-binding protein
BENEMHLD_02485	1.1e-114	-	-	-	-	-	-	-	-
BENEMHLD_02486	1.66e-249	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase
BENEMHLD_02487	1.33e-167	-	-	-	K	ko:K03710	-	ko00000,ko03000	UTRA
BENEMHLD_02488	2.82e-281	agaS	-	-	G	ko:K02082	-	ko00000,ko01000	SIS domain
BENEMHLD_02489	1.12e-288	nagA	3.5.1.25	-	G	ko:K01443	ko00520,ko01130,map00520,map01130	ko00000,ko00001,ko01000	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BENEMHLD_02490	0.0	bgaC	3.2.1.23	-	G	ko:K12308	ko00052,map00052	ko00000,ko00001,ko01000	Glycosyl hydrolases family 35
BENEMHLD_02491	3.25e-107	-	2.7.1.191	-	G	ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
BENEMHLD_02492	3.11e-166	-	-	-	G	ko:K02795	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sorbose-specific iic component
BENEMHLD_02493	2.21e-188	-	-	-	G	ko:K02796	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system mannose/fructose/sorbose family IID component
BENEMHLD_02494	1.91e-85	-	2.7.1.191	-	G	ko:K02793	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system fructose IIA component
BENEMHLD_02495	4.29e-226	lacC	2.7.1.144	-	F	ko:K00917	ko00052,ko01100,map00052,map01100	ko00000,ko00001,ko01000	pfkB family carbohydrate kinase
BENEMHLD_02496	1.69e-189	srlD	1.1.1.140	-	IQ	ko:K00068	ko00051,map00051	ko00000,ko00001,ko01000	KR domain
BENEMHLD_02497	1.74e-308	-	-	-	G	ko:K02775	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
BENEMHLD_02498	4.98e-49	-	-	-	-	-	-	-	-
BENEMHLD_02499	2.42e-60	-	-	-	K	-	-	-	DNA-binding helix-turn-helix protein
BENEMHLD_02500	2.08e-213	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BENEMHLD_02501	1.39e-07	rbsB	-	-	G	ko:K10439	ko02010,ko02030,map02010,map02030	ko00000,ko00001,ko00002,ko02000	Periplasmic binding protein domain
BENEMHLD_02502	5.98e-242	rbsR	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding proteins and sugar binding domain of LacI family
BENEMHLD_02503	0.0	-	-	-	E	-	-	-	Amino acid permease
BENEMHLD_02504	1.98e-196	thiD	2.7.1.49, 2.7.4.7	-	H	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Phosphomethylpyrimidine kinase
BENEMHLD_02505	1.43e-134	thiE	2.5.1.3	-	H	ko:K00788	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP)
BENEMHLD_02506	3.99e-194	thiM	2.7.1.50	-	H	ko:K00878	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
BENEMHLD_02507	2.96e-106	thiW	-	-	S	-	-	-	Thiamine-precursor transporter protein (ThiW)
BENEMHLD_02508	5.67e-165	tenA	3.5.99.2	-	K	ko:K03707	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03000	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BENEMHLD_02509	5.88e-146	ykoC	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	cobalt transport
BENEMHLD_02510	2.41e-314	-	-	-	P	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
BENEMHLD_02511	1.12e-123	-	-	-	S	ko:K16925	-	ko00000,ko00002,ko02000	ABC-type cobalt transport system, permease component
BENEMHLD_02512	0.0	nisT	-	-	V	ko:K06147,ko:K20485	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko02000	ABC transporter
BENEMHLD_02514	6.96e-158	-	-	-	S	ko:K03824	-	ko00000,ko01000	Acetyltransferase (GNAT) family
BENEMHLD_02515	0.0	oppA	-	-	E	ko:K02035,ko:K15580	ko01501,ko02010,ko02024,map01501,map02010,map02024	ko00000,ko00001,ko00002,ko02000	ABC transporter, substratebinding protein
BENEMHLD_02516	4.93e-303	pepT	3.4.11.4	-	E	ko:K01258	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
BENEMHLD_02517	0.0	-	-	-	GKT	ko:K03491	-	ko00000,ko03000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_02518	5.19e-251	-	-	-	E	-	-	-	M42 glutamyl aminopeptidase
BENEMHLD_02519	2.26e-65	-	2.7.1.196, 2.7.1.205	-	G	ko:K02759	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIA subunit
BENEMHLD_02520	2.02e-78	-	2.7.1.196, 2.7.1.205	-	G	ko:K02760	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_02521	0.0	-	-	-	U	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BENEMHLD_02522	3.42e-258	-	3.4.11.9	-	E	ko:K01262	-	ko00000,ko01000,ko01002	Creatinase/Prolidase N-terminal domain
BENEMHLD_02523	5.02e-298	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Aminotransferase, class I
BENEMHLD_02524	2.3e-293	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2325)
BENEMHLD_02525	0.0	tagE	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	An N-acetylglucosaminyl transferase that is part of the accessory SecA2 SecY2 system specifically required to export serine-rich repeat cell wall proteins usually encoded upstream in the same operon
BENEMHLD_02526	0.0	-	2.4.1.52	GT4	M	ko:K00712	-	ko00000,ko01000,ko01003	Glycosyl transferases group 1
BENEMHLD_02528	1.12e-208	-	-	-	-	-	-	-	-
BENEMHLD_02529	8.14e-63	-	2.7.1.200	-	G	ko:K02774	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_02530	1.7e-112	-	2.7.1.200	-	G	ko:K02773	ko00052,ko01100,ko02060,map00052,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_02531	1.86e-188	-	4.1.2.13	-	G	ko:K01624	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-bisphosphate aldolase class-II
BENEMHLD_02532	2.66e-217	-	4.1.2.13	-	G	ko:K01624	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-bisphosphate aldolase class-II
BENEMHLD_02533	4.83e-108	-	2.7.1.191	-	G	ko:K02794	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system sorbose subfamily IIB component
BENEMHLD_02534	2.58e-93	-	2.7.1.191	-	G	ko:K02793	ko00051,ko00520,ko01100,ko02060,map00051,map00520,map01100,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system fructose IIA component
BENEMHLD_02535	0.0	-	-	-	G	-	-	-	PTS system sorbose-specific iic component
BENEMHLD_02536	1.74e-162	tal	2.2.1.2	-	H	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Transaldolase/Fructose-6-phosphate aldolase
BENEMHLD_02537	3.05e-237	-	-	-	K	ko:K02529	-	ko00000,ko03000	helix_turn _helix lactose operon repressor
BENEMHLD_02538	1.37e-218	-	-	-	P	-	-	-	YhfZ C-terminal domain
BENEMHLD_02540	1.01e-75	-	-	-	S	-	-	-	Protein of unknown function DUF2620
BENEMHLD_02541	5.79e-275	-	-	-	S	-	-	-	Protein of unknown function
BENEMHLD_02542	7.89e-213	php	-	-	S	ko:K07048	-	ko00000	Phosphotriesterase family
BENEMHLD_02543	2.17e-264	-	-	-	E	-	-	-	Cys/Met metabolism PLP-dependent enzyme
BENEMHLD_02544	6.68e-283	-	-	-	E	-	-	-	Alanine racemase, N-terminal domain
BENEMHLD_02545	2.84e-305	-	-	-	G	-	-	-	Metalloenzyme superfamily
BENEMHLD_02546	4.54e-204	XK27_10120	-	-	K	-	-	-	S-adenosyl-l-methionine hydroxide adenosyltransferase
BENEMHLD_02547	1.43e-125	-	-	-	S	ko:K16924	-	ko00000,ko00002,ko02000	UPF0397 protein
BENEMHLD_02548	0.0	-	-	-	P	ko:K16786,ko:K16787	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ATP-binding cassette cobalt transporter
BENEMHLD_02549	8.04e-192	cbiQ	-	-	P	ko:K16785	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	cobalt transport
BENEMHLD_02551	3.38e-274	menC	4.2.1.113	-	H	ko:K02549	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB)
BENEMHLD_02552	0.0	nagZ	3.2.1.52	-	G	ko:K01207	ko00520,ko00531,ko01100,ko01501,map00520,map00531,map01100,map01501	ko00000,ko00001,ko00002,ko01000	Glycosyl hydrolase family 3 N terminal domain
BENEMHLD_02553	1.82e-227	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
BENEMHLD_02555	1.14e-148	pinR1	-	-	L	-	-	-	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed
BENEMHLD_02556	3.83e-61	-	-	-	L	-	-	-	BRCA1 C Terminus (BRCT) domain
BENEMHLD_02557	6.86e-114	-	-	-	-	-	-	-	-
BENEMHLD_02558	7.64e-88	-	-	-	S	ko:K07006	-	ko00000	Pyridoxamine 5'-phosphate oxidase
BENEMHLD_02559	3.57e-260	-	3.4.22.70	-	M	ko:K07284	-	ko00000,ko01000,ko01002,ko01011	Sortase family
BENEMHLD_02560	5.29e-238	-	-	-	M	-	-	-	LPXTG cell wall anchor motif
BENEMHLD_02561	5.62e-166	-	-	-	M	-	-	-	domain protein
BENEMHLD_02562	0.0	yvcC	-	-	M	-	-	-	Cna protein B-type domain
BENEMHLD_02563	1.4e-314	-	-	-	E	-	-	-	Peptidase family M20/M25/M40
BENEMHLD_02564	8.55e-99	-	-	-	K	-	-	-	DNA-binding transcription factor activity
BENEMHLD_02565	2.11e-54	-	-	-	K	-	-	-	Transcriptional regulator, LysR family
BENEMHLD_02566	0.0	ebgA	3.2.1.23	-	G	ko:K01190,ko:K12111	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
BENEMHLD_02567	0.0	-	-	-	E	-	-	-	Amino Acid
BENEMHLD_02568	0.0	lysP	-	-	E	ko:K03293,ko:K11733	-	ko00000,ko02000	amino acid
BENEMHLD_02569	3.34e-209	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
BENEMHLD_02570	0.0	-	-	-	GK	-	-	-	helix_turn_helix, arabinose operon control protein
BENEMHLD_02571	7.02e-269	-	-	-	G	-	-	-	Major Facilitator Superfamily
BENEMHLD_02572	0.0	-	-	-	S	ko:K12941	-	ko00000,ko01002	Peptidase dimerisation domain
BENEMHLD_02573	2.39e-255	-	1.5.1.28	-	C	ko:K04940	-	ko00000,ko01000	NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
BENEMHLD_02574	5.87e-172	yxeO	-	-	E	ko:K16960,ko:K16963	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
BENEMHLD_02575	1.07e-209	-	-	-	ET	ko:K16957	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Bacterial periplasmic substrate-binding proteins
BENEMHLD_02576	5.19e-148	ytmL	-	-	P	ko:K16958,ko:K16959	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BENEMHLD_02577	9.72e-156	-	-	-	P	ko:K16958	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BENEMHLD_02578	3.15e-174	-	-	-	-	-	-	-	-
BENEMHLD_02581	4.39e-25	-	-	-	S	-	-	-	YvrJ protein family
BENEMHLD_02582	1.02e-188	-	-	-	M	-	-	-	hydrolase, family 25
BENEMHLD_02583	1.17e-35	tcaA	-	-	S	ko:K21463	-	ko00000	response to antibiotic
BENEMHLD_02584	6.48e-115	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_02585	3.29e-237	yxeA	-	-	V	ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter permease
BENEMHLD_02586	2.12e-155	lolD	-	-	V	ko:K02003	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_02587	0.0	npr	1.11.1.1	-	C	ko:K05910	-	ko00000,ko01000	NADH oxidase
BENEMHLD_02588	1.58e-195	-	-	-	S	-	-	-	hydrolase
BENEMHLD_02589	8.23e-61	-	-	-	S	ko:K19157	-	ko00000,ko01000,ko02048	Bacterial toxin of type II toxin-antitoxin system, YafQ
BENEMHLD_02590	9.06e-183	ant1	2.7.7.47	-	H	ko:K00984	-	ko00000,ko01000,ko01504	Mediates bacterial resistance to the antibiotics streptomycin and spectomycin
BENEMHLD_02598	0.0	cps2E	-	-	M	-	-	-	Bacterial sugar transferase
BENEMHLD_02599	1.61e-225	cps2D	5.1.3.2, 5.1.3.25	-	M	ko:K01784,ko:K17947	ko00052,ko00520,ko00523,ko01100,ko01130,map00052,map00520,map00523,map01100,map01130	ko00000,ko00001,ko00002,ko01000	RmlD substrate binding domain
BENEMHLD_02600	7.92e-142	glnP	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BENEMHLD_02601	1.18e-140	glnM	-	-	P	ko:K10040	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter permease
BENEMHLD_02602	6.12e-191	glnH	-	-	ET	ko:K10039	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter substrate-binding protein
BENEMHLD_02603	1.05e-172	glnQ	-	-	E	ko:K10041	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_02604	6.79e-222	-	-	-	-	-	-	-	-
BENEMHLD_02606	1.93e-110	zur	-	-	P	ko:K02076,ko:K03711	-	ko00000,ko03000	Belongs to the Fur family
BENEMHLD_02607	7.71e-14	-	-	-	-	-	-	-	-
BENEMHLD_02608	8.86e-145	gmk2	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Guanylate kinase
BENEMHLD_02609	2.96e-91	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
BENEMHLD_02610	1.05e-203	spl	-	-	M	ko:K21471	-	ko00000,ko01000,ko01002,ko01011	NlpC/P60 family
BENEMHLD_02611	5.84e-312	tyrS	6.1.1.1	-	J	ko:K01866	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BENEMHLD_02612	2.89e-19	yeaB	-	-	P	-	-	-	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BENEMHLD_02613	4.82e-180	yeaB	-	-	P	-	-	-	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BENEMHLD_02614	3.38e-72	-	-	-	K	-	-	-	helix_turn_helix, Arsenical Resistance Operon Repressor
BENEMHLD_02615	2.2e-222	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
BENEMHLD_02616	0.0	malZ	3.2.1.20, 3.2.1.41	CBM48,GH13,GH31	G	ko:K01187,ko:K01200	ko00052,ko00500,ko01100,ko01110,map00052,map00500,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 13 family
BENEMHLD_02617	0.0	glgP	2.4.1.1	GT35	G	ko:K00688	ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931	ko00000,ko00001,ko01000	Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties
BENEMHLD_02618	0.0	glgA	2.4.1.21	GT5	F	ko:K00703	ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026	ko00000,ko00001,ko00002,ko01000,ko01003	Synthesizes alpha-1,4-glucan chains using ADP-glucose
BENEMHLD_02619	1.29e-259	glgD	2.7.7.27	-	G	ko:K00975	ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026	ko00000,ko00001,ko00002,ko01000	Nucleotidyl transferase
BENEMHLD_02620	1.51e-254	glgC	2.7.7.27	-	H	ko:K00975	ko00500,ko00520,ko01100,ko01110,ko02026,map00500,map00520,map01100,map01110,map02026	ko00000,ko00001,ko00002,ko01000	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BENEMHLD_02621	0.0	glgB	2.4.1.18	CBM48,GH13	G	ko:K00700	ko00500,ko01100,ko01110,map00500,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BENEMHLD_02622	1.06e-262	ilvE	2.6.1.42	-	E	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Branched-chain amino acid aminotransferase
BENEMHLD_02623	1.8e-180	-	-	-	M	-	-	-	Sortase family
BENEMHLD_02624	3.72e-186	-	-	-	S	-	-	-	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BENEMHLD_02625	0.0	fbp	3.1.3.11	-	G	ko:K04041	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	phosphatase activity
BENEMHLD_02626	0.0	-	-	-	K	-	-	-	Mga helix-turn-helix domain
BENEMHLD_02628	1.71e-203	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
BENEMHLD_02629	0.0	dtpT	-	-	U	ko:K03305	-	ko00000	amino acid peptide transporter
BENEMHLD_02630	0.0	-	-	-	V	ko:K02003,ko:K02004	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_02631	2.43e-87	-	-	-	-	-	-	-	-
BENEMHLD_02632	2.4e-97	-	-	-	S	-	-	-	function, without similarity to other proteins
BENEMHLD_02633	0.0	-	-	-	G	-	-	-	MFS/sugar transport protein
BENEMHLD_02634	1.26e-299	-	3.2.1.51	GH29	G	ko:K01206	ko00511,map00511	ko00000,ko00001,ko01000,ko04147	Alpha-L-fucosidase
BENEMHLD_02635	3.89e-75	-	-	-	-	-	-	-	-
BENEMHLD_02636	0.0	pckA	4.1.1.49	-	C	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Phosphoenolpyruvate carboxykinase
BENEMHLD_02637	3.18e-34	-	-	-	S	-	-	-	Virus attachment protein p12 family
BENEMHLD_02638	0.0	feoB	-	-	P	ko:K04759	-	ko00000,ko02000	transporter of a GTP-driven Fe(2 ) uptake system
BENEMHLD_02639	1.12e-131	feoA	-	-	P	ko:K04758	-	ko00000,ko02000	FeoA
BENEMHLD_02640	1.88e-174	-	-	-	E	-	-	-	lipolytic protein G-D-S-L family
BENEMHLD_02641	1.12e-115	-	-	-	E	-	-	-	AAA domain
BENEMHLD_02644	2.62e-152	-	-	-	S	ko:K07118	-	ko00000	NAD(P)H-binding
BENEMHLD_02645	1.95e-118	-	-	-	S	-	-	-	MucBP domain
BENEMHLD_02646	5.24e-113	-	-	-	-	-	-	-	-
BENEMHLD_02648	5.68e-175	-	-	-	K	ko:K03492	-	ko00000,ko03000	UbiC transcription regulator-associated domain protein
BENEMHLD_02649	5e-174	yulB	-	-	K	ko:K22103	-	ko00000,ko03000	DeoR C terminal sensor domain
BENEMHLD_02650	1.1e-186	-	4.1.2.17	-	G	ko:K01628	ko00051,ko01120,map00051,map01120	ko00000,ko00001,ko01000	Class II Aldolase and Adducin N-terminal domain
BENEMHLD_02651	2.28e-102	fucU	5.1.3.29	-	G	ko:K02431	-	ko00000,ko01000	RbsD / FucU transport protein family
BENEMHLD_02652	5.31e-301	xylT	-	-	EGP	ko:K06609	-	ko00000,ko02000	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
BENEMHLD_02653	0.0	rhaB	2.7.1.5	-	G	ko:K00848	ko00040,ko00051,ko01120,map00040,map00051,map01120	ko00000,ko00001,ko01000	FGGY family of carbohydrate kinases, N-terminal domain
BENEMHLD_02654	0.0	fucI	5.3.1.25, 5.3.1.3	-	G	ko:K01818	ko00051,ko01120,map00051,map01120	ko00000,ko00001,ko01000	Converts the aldose L-fucose into the corresponding ketose L-fuculose
BENEMHLD_02655	6.49e-213	rhaD	4.1.2.19	-	H	ko:K01629	ko00040,ko00051,ko01120,map00040,map00051,map01120	ko00000,ko00001,ko01000	Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde
BENEMHLD_02656	0.0	rhaA	2.7.1.5, 5.3.1.14	-	G	ko:K00848,ko:K01813	ko00040,ko00051,ko01120,map00040,map00051,map01120	ko00000,ko00001,ko01000	L-rhamnose isomerase (RhaA)
BENEMHLD_02657	1.04e-74	rhaM	5.1.3.32	-	G	ko:K03534	-	ko00000,ko01000	Involved in the anomeric conversion of L-rhamnose
BENEMHLD_02658	0.0	rhaB	2.7.1.5	-	F	ko:K00848	ko00040,ko00051,ko01120,map00040,map00051,map01120	ko00000,ko00001,ko01000	Involved in the catabolism of L-rhamnose (6-deoxy-L- mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1-hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate
BENEMHLD_02659	0.0	iolF	-	-	P	ko:K06610	-	ko00000,ko02000	Sugar (and other) transporter
BENEMHLD_02660	8.93e-249	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
BENEMHLD_02661	5.2e-276	adhC	1.1.1.90	-	C	ko:K00055	ko00350,ko00360,ko00622,ko00623,ko01100,ko01120,ko01220,map00350,map00360,map00622,map00623,map01100,map01120,map01220	ko00000,ko00001,ko00002,ko01000	Zn-dependent alcohol dehydrogenases, class III
BENEMHLD_02662	4.88e-88	-	-	-	S	-	-	-	Protein of unknown function (DUF1093)
BENEMHLD_02663	6.29e-162	-	-	-	-	-	-	-	-
BENEMHLD_02664	0.0	-	3.2.1.10, 3.2.1.20	GH13,GH31	G	ko:K01182,ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Alpha amylase, catalytic domain protein
BENEMHLD_02665	1.75e-52	-	-	-	L	ko:K07483	-	ko00000	Transposase and inactivated derivatives
BENEMHLD_02666	5.27e-191	is18	-	-	L	-	-	-	Integrase core domain
BENEMHLD_02667	1.16e-208	-	-	-	L	ko:K07497	-	ko00000	PFAM Integrase catalytic region
BENEMHLD_02668	1.77e-56	-	-	-	-	-	-	-	-
BENEMHLD_02669	0.0	pacL	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	P-type ATPase
BENEMHLD_02671	2.15e-77	-	-	-	L	-	-	-	Putative transposase of IS4/5 family (DUF4096)
BENEMHLD_02672	2.06e-108	-	-	-	L	-	-	-	Transposase DDE domain
BENEMHLD_02673	1.16e-248	napA	-	-	P	-	-	-	Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
BENEMHLD_02674	2.06e-108	-	-	-	L	-	-	-	Transposase DDE domain
BENEMHLD_02675	1.51e-77	-	-	-	L	-	-	-	Putative transposase of IS4/5 family (DUF4096)
BENEMHLD_02676	1.4e-162	tnp1216	-	-	L	ko:K07498	-	ko00000	DDE domain
BENEMHLD_02677	0.0	eriC	-	-	P	ko:K03281	-	ko00000	chloride
BENEMHLD_02678	2.8e-228	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family
BENEMHLD_02679	2.97e-286	-	-	-	G	-	-	-	Major Facilitator Superfamily
BENEMHLD_02704	2.21e-121	sigH	-	-	K	ko:K03088,ko:K03091,ko:K12296	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko03000,ko03021	Sigma-70 region 2
BENEMHLD_02705	0.0	ybeC	-	-	E	-	-	-	amino acid
BENEMHLD_02706	1.55e-294	pimB	2.4.1.337	GT4	M	ko:K19002	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
BENEMHLD_02707	7.66e-251	cpoA	2.4.1.208	GT4	M	ko:K13677,ko:K13678	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyltransferase, group 1 family protein
BENEMHLD_02708	1.12e-224	mprF	-	-	I	ko:K07027	-	ko00000,ko02000	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BENEMHLD_02709	9.1e-281	araT	-	-	E	ko:K00841	ko00300,ko01100,ko01110,ko01230,map00300,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
BENEMHLD_02710	1.4e-58	ykuJ	-	-	S	-	-	-	Protein of unknown function (DUF1797)
BENEMHLD_02711	0.0	ltaS	2.7.8.20	-	M	ko:K19005	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
BENEMHLD_02712	1.8e-104	perR	-	-	P	ko:K03711,ko:K09825	-	ko00000,ko03000	Belongs to the Fur family
BENEMHLD_02713	9.05e-314	-	-	-	G	ko:K02027	-	ko00000,ko00002,ko02000	Bacterial extracellular solute-binding protein
BENEMHLD_02714	1.1e-188	malF	-	-	G	ko:K02026	-	ko00000,ko00002,ko02000	Binding-protein-dependent transport system inner membrane component
BENEMHLD_02715	1.21e-213	-	-	-	P	ko:K02025	-	ko00000,ko00002,ko02000	ABC-type sugar transport systems, permease components
BENEMHLD_02716	2.11e-249	malK	-	-	P	ko:K10112,ko:K17240	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_02717	7.94e-134	-	-	-	K	ko:K06977	-	ko00000	Acetyltransferase (GNAT) domain
BENEMHLD_02718	5.33e-119	-	-	-	-	-	-	-	-
BENEMHLD_02719	5.93e-205	ycsE	-	-	S	-	-	-	Sucrose-6F-phosphate phosphohydrolase
BENEMHLD_02720	4.68e-168	ung	3.2.2.27	-	L	ko:K03648	ko03410,ko05340,map03410,map05340	ko00000,ko00001,ko01000,ko03400	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BENEMHLD_02721	4.47e-230	pta	2.3.1.8, 3.6.3.21	-	C	ko:K00625,ko:K02028	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000,ko02000	phosphate acetyltransferase
BENEMHLD_02722	5.07e-108	ydiB	-	-	O	ko:K06925	-	ko00000,ko03016	Hydrolase, P-loop family
BENEMHLD_02723	6.5e-214	-	-	-	S	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
BENEMHLD_02724	5.04e-279	ysdA	-	-	CP	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
BENEMHLD_02725	3.99e-129	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III
BENEMHLD_02726	2.84e-192	exoA	3.1.11.2	-	L	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	exodeoxyribonuclease III
BENEMHLD_02728	1.06e-08	-	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_02729	3.38e-308	-	-	-	EGP	-	-	-	Major Facilitator
BENEMHLD_02730	1.27e-94	-	-	-	K	-	-	-	helix_turn_helix multiple antibiotic resistance protein
BENEMHLD_02731	6.08e-136	-	-	-	-	-	-	-	-
BENEMHLD_02732	8.52e-41	-	-	-	-	-	-	-	-
BENEMHLD_02733	1.71e-53	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
BENEMHLD_02734	1.11e-74	-	-	-	-	-	-	-	-
BENEMHLD_02735	3.86e-107	-	-	-	-	-	-	-	-
BENEMHLD_02736	0.0	-	-	-	K	ko:K02538	-	ko00000,ko03000	PRD domain
BENEMHLD_02737	2.48e-91	-	-	-	G	ko:K02806	ko02060,map02060	ko00000,ko00001,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_02738	8.5e-100	-	2.7.1.202	-	G	ko:K02768	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_02739	5.34e-64	-	2.7.1.202	-	G	ko:K02769	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_02740	3.36e-202	-	-	-	G	ko:K02770	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	Phosphotransferase System
BENEMHLD_02741	7.16e-155	tal	2.2.1.2	-	F	ko:K00616	ko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BENEMHLD_02742	2.23e-166	alsE	-	-	G	ko:K17195	ko00051,ko01120,map00051,map01120	ko00000,ko00001,ko01000	Ribulose-phosphate 3 epimerase family
BENEMHLD_02743	8.85e-102	-	2.7.1.194	-	G	ko:K02821	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_02744	1.2e-59	ulaB	2.7.1.194	-	G	ko:K02822	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphotransferase system galactitol-specific IIB component
BENEMHLD_02745	3.87e-88	ulaA	-	-	S	ko:K03475	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
BENEMHLD_02746	4.66e-196	metQ1	-	-	P	ko:K02073	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the nlpA lipoprotein family
BENEMHLD_02747	9.68e-252	-	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolases, choloylglycine hydrolase family
BENEMHLD_02748	1.01e-224	-	-	-	-	-	-	-	-
BENEMHLD_02749	0.0	l1n	4.2.1.53	-	S	ko:K10254	-	ko00000,ko01000	Myosin-crossreactive antigen
BENEMHLD_02750	1.61e-24	-	-	-	-	-	-	-	-
BENEMHLD_02751	1.18e-134	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_02752	1.22e-77	dhaM	2.7.1.121	-	S	ko:K05881	ko00561,map00561	ko00000,ko00001,ko01000,ko02000	PTS system fructose IIA component
BENEMHLD_02753	1.72e-134	dhaL	2.7.1.121	-	S	ko:K05879	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Dak2
BENEMHLD_02754	1.47e-242	dhaK	2.7.1.121	-	G	ko:K05878	ko00561,ko01100,map00561,map01100	ko00000,ko00001,ko01000	Dak1 domain
BENEMHLD_02755	2.13e-101	-	-	-	O	-	-	-	OsmC-like protein
BENEMHLD_02756	1.28e-155	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
BENEMHLD_02757	4.74e-267	-	-	-	-	-	-	-	-
BENEMHLD_02758	1.54e-135	rfbA	2.7.7.24	-	H	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BENEMHLD_02759	2.2e-140	rfbC	5.1.3.13	-	M	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
BENEMHLD_02760	2.92e-259	rfbB	4.2.1.46	-	M	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
BENEMHLD_02761	1.03e-205	brpA	-	-	K	-	-	-	Cell envelope-like function transcriptional attenuator common domain protein
BENEMHLD_02762	5.46e-184	ywqE	3.1.3.48	-	GM	ko:K01104	-	ko00000,ko01000	PHP domain protein
BENEMHLD_02763	0.0	clpE	-	-	O	ko:K03697,ko:K04086	-	ko00000,ko03110	associated with various cellular activities
BENEMHLD_02764	3.92e-86	spx2	-	-	P	ko:K16509	-	ko00000	ArsC family
BENEMHLD_02765	9.48e-241	ulaA	-	-	S	ko:K03475	ko00053,ko01100,ko01120,ko02060,map00053,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	PTS system sugar-specific permease component
BENEMHLD_02766	8.16e-206	tktN	2.2.1.1	-	G	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Transketolase, thiamine diphosphate binding domain
BENEMHLD_02767	9.56e-243	tktC	2.2.1.1	-	G	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Transketolase
BENEMHLD_02768	8.9e-214	scrK	2.7.1.4	-	GK	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	ROK family
BENEMHLD_02769	5.18e-172	-	-	-	K	ko:K02530	-	ko00000,ko03000	DeoR C terminal sensor domain
BENEMHLD_02770	6.85e-103	-	2.7.1.202	-	GT	ko:K02768	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BENEMHLD_02771	2.31e-69	-	2.7.1.202	-	G	ko:K02769	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko01000,ko02000	PTS system, Lactose/Cellobiose specific IIB subunit
BENEMHLD_02772	7.64e-223	-	-	-	G	ko:K02770	ko00051,ko01100,ko01120,ko02060,map00051,map01100,map01120,map02060	ko00000,ko00001,ko00002,ko02000	Phosphotransferase System
BENEMHLD_02778	5.72e-199	-	-	-	S	-	-	-	Protein of unknown function (DUF2785)
BENEMHLD_02779	1.67e-66	-	-	-	-	-	-	-	-
BENEMHLD_02780	0.0	pbpC	-	-	M	ko:K21467	-	ko00000,ko01011	NTF2-like N-terminal transpeptidase domain
BENEMHLD_02781	7.69e-134	-	-	-	-	-	-	-	-
BENEMHLD_02782	8.95e-140	-	-	-	N	ko:K09384	-	ko00000	Uncharacterized conserved protein (DUF2075)
BENEMHLD_02783	1.07e-61	holB	2.7.7.7	-	L	ko:K02341,ko:K02343,ko:K09384	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	replication factor c
BENEMHLD_02784	0.0	-	-	-	L	-	-	-	UvrD/REP helicase N-terminal domain
BENEMHLD_02785	0.0	-	-	-	L	ko:K07459	-	ko00000	AAA ATPase domain
BENEMHLD_02786	1.87e-215	yicL	-	-	EG	-	-	-	EamA-like transporter family
BENEMHLD_02787	0.0	-	-	-	S	-	-	-	Leucine-rich repeat (LRR) protein
BENEMHLD_02788	2.69e-158	-	-	-	N	-	-	-	WxL domain surface cell wall-binding
BENEMHLD_02789	1.58e-83	-	-	-	-	-	-	-	-
BENEMHLD_02790	1.74e-163	-	-	-	S	-	-	-	WxL domain surface cell wall-binding
BENEMHLD_02791	2.17e-45	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
BENEMHLD_02792	3.82e-149	-	-	-	L	-	-	-	PFAM transposase, IS4 family protein
BENEMHLD_02794	1.29e-58	XK27_01125	-	-	L	ko:K07484	-	ko00000	PFAM IS66 Orf2 family protein
BENEMHLD_02795	0.0	-	-	-	L	ko:K07484	-	ko00000	Transposase IS66 family
BENEMHLD_02797	2.34e-240	-	-	-	-	-	-	-	-
BENEMHLD_02798	2.42e-164	WQ51_05710	-	-	S	-	-	-	Mitochondrial biogenesis AIM24
BENEMHLD_02799	5.29e-195	-	-	-	S	-	-	-	Alpha/beta hydrolase family
BENEMHLD_02800	5.33e-135	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
BENEMHLD_02801	4.31e-239	-	-	-	V	ko:K01421	-	ko00000	domain protein
BENEMHLD_02802	4.22e-92	-	-	-	S	-	-	-	ECF-type riboflavin transporter, S component
BENEMHLD_02803	6.61e-186	CcmA5	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter
BENEMHLD_02804	0.0	-	-	-	-	-	-	-	-
BENEMHLD_02805	9.79e-279	aspC	2.6.1.57	-	E	ko:K00832,ko:K00841	ko00270,ko00300,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase
BENEMHLD_02806	5.89e-231	ldhD	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BENEMHLD_02807	5.61e-83	-	-	-	S	ko:K07035	-	ko00000	Phosphotransferase system, EIIC
BENEMHLD_02808	9.94e-143	XK27_07085	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
BENEMHLD_02810	1.96e-189	-	-	-	K	-	-	-	Helix-turn-helix domain
BENEMHLD_02813	1.88e-100	-	-	-	S	ko:K07052	-	ko00000	CAAX protease self-immunity
BENEMHLD_02814	1.13e-93	-	-	-	S	-	-	-	COG NOG38524 non supervised orthologous group
BENEMHLD_02815	0.0	-	-	-	L	-	-	-	Uncharacterised protein family (UPF0236)
BENEMHLD_02816	0.0	-	-	-	L	-	-	-	Transposase DDE domain
BENEMHLD_02817	2.69e-196	-	-	-	L	ko:K07497	-	ko00000	PFAM Integrase catalytic region
BENEMHLD_02818	5.98e-114	-	-	-	L	ko:K07483,ko:K07497	-	ko00000	Helix-turn-helix domain
BENEMHLD_02820	7.79e-189	mngB	3.2.1.170	GH38	G	ko:K15524	-	ko00000,ko01000	Glycosyl hydrolases family 38 N-terminal domain
BENEMHLD_02821	1.69e-76	-	-	-	G	ko:K02761	ko00500,ko02060,map00500,map02060	ko00000,ko00001,ko00002,ko02000	The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active - transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane
BENEMHLD_02822	1.48e-246	-	-	-	L	-	-	-	Transposase and inactivated derivatives, IS30 family