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ORF_ID	e_value	Gene_name	EC_number	CAZy	COGs	KEGG_ko	KEGG_Pathway	BRITE	Description
LIMDEABD_00001	5.32e-312	-	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
LIMDEABD_00002	0.0	lnt	-	GT2	M	ko:K03820	-	ko00000,ko01000	Carbon-nitrogen hydrolase
LIMDEABD_00003	4.07e-274	folC	6.3.2.12, 6.3.2.17	-	H	ko:K11754	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the folylpolyglutamate synthase family
LIMDEABD_00004	3.46e-40	-	-	-	-	-	-	-	-
LIMDEABD_00005	1.88e-58	-	-	-	S	-	-	-	S1 P1 nuclease
LIMDEABD_00007	4.57e-73	-	-	-	-	-	-	-	-
LIMDEABD_00009	5.41e-62	-	-	-	S	-	-	-	Putative binding domain, N-terminal
LIMDEABD_00010	2.7e-149	-	-	-	Q	ko:K21572	-	ko00000,ko02000	pyridine nucleotide-disulphide oxidoreductase
LIMDEABD_00011	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00012	1.65e-55	-	-	-	PT	-	-	-	Domain of unknown function (DUF4974)
LIMDEABD_00013	2.04e-42	-	-	-	K	ko:K03088	-	ko00000,ko03021	RNA polymerase sigma-70 factor
LIMDEABD_00014	1.63e-63	-	-	-	T	-	-	-	Protein of unknown function (DUF3467)
LIMDEABD_00015	4.11e-151	-	-	-	E	-	-	-	LysE type translocator
LIMDEABD_00016	3.36e-154	cmk	2.7.4.25	-	F	ko:K00945	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the cytidylate kinase family. Type 1 subfamily
LIMDEABD_00017	2.01e-184	ispH	1.17.7.4	-	IM	ko:K03527	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LIMDEABD_00018	1.19e-80	-	-	-	-	-	-	-	-
LIMDEABD_00019	0.0	prc	3.4.21.102	-	M	ko:K03797	-	ko00000,ko01000,ko01002	Belongs to the peptidase S41A family
LIMDEABD_00020	5.48e-262	vicK	-	-	T	-	-	-	histidine kinase DNA gyrase B
LIMDEABD_00021	2.85e-107	-	-	-	S	-	-	-	Domain of unknown function (DUF4271)
LIMDEABD_00022	3.95e-175	hemD	4.2.1.75	-	H	ko:K01719	ko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000	Uroporphyrinogen-III synthase HemD
LIMDEABD_00023	2.36e-75	rnpA	3.1.26.5	-	J	ko:K03536	-	ko00000,ko01000,ko03016	RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
LIMDEABD_00024	9.87e-58	yidD	-	-	S	ko:K08998	-	ko00000	Could be involved in insertion of integral membrane proteins into the membrane
LIMDEABD_00025	8.64e-182	czcD	-	-	P	ko:K16264	-	ko00000,ko02000	Cation efflux family
LIMDEABD_00026	4.72e-201	-	-	-	D	ko:K07322	-	ko00000	Hemerythrin HHE cation binding domain
LIMDEABD_00027	0.0	ltaS2	-	-	M	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00028	7.71e-148	upp	2.4.2.9	-	F	ko:K00761	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Uracil phosphoribosyltransferase
LIMDEABD_00029	2.8e-262	hflX	-	-	S	ko:K03665	-	ko00000,ko03009	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LIMDEABD_00030	2.34e-142	-	-	-	U	ko:K03832	-	ko00000,ko02000	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LIMDEABD_00031	1.48e-221	rlmN	2.1.1.192	-	J	ko:K06941	-	ko00000,ko01000,ko03009	Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs
LIMDEABD_00032	2.29e-74	-	-	-	CO	-	-	-	Protein of unknown function, DUF255
LIMDEABD_00033	9.07e-125	rsmG	2.1.1.170	-	J	ko:K03501	-	ko00000,ko01000,ko03009,ko03036	Specifically methylates the N7 position of a guanine in 16S rRNA
LIMDEABD_00034	3.9e-119	-	-	-	K	ko:K03088	-	ko00000,ko03021	Belongs to the sigma-70 factor family. ECF subfamily
LIMDEABD_00035	2.72e-247	-	-	-	M	-	-	-	Psort location CytoplasmicMembrane, score
LIMDEABD_00036	1.83e-273	tgt	2.4.2.29	-	J	ko:K00773	-	ko00000,ko01000,ko03016	Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine)
LIMDEABD_00038	4.77e-248	lptG	-	-	S	ko:K11720	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Predicted permease YjgP/YjgQ family
LIMDEABD_00039	6.36e-183	spk1	2.7.11.1, 6.3.2.4	-	S	ko:K01921,ko:K08884,ko:K12132	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01001,ko01011	PASTA domain
LIMDEABD_00040	4.42e-248	rluD	5.4.99.23	-	J	ko:K06180	-	ko00000,ko01000,ko03009	Responsible for synthesis of pseudouridine from uracil
LIMDEABD_00041	0.0	-	-	-	C	-	-	-	Domain of unknown function (DUF3362)
LIMDEABD_00042	3.64e-275	-	-	-	S	-	-	-	Conserved hypothetical protein 698
LIMDEABD_00043	3.06e-206	-	-	-	P	-	-	-	phosphate-selective porin O and P
LIMDEABD_00046	1.39e-149	prmA	-	-	J	ko:K02687	-	ko00000,ko01000,ko03009	Ribosomal protein L11 methyltransferase
LIMDEABD_00047	3.19e-189	xerC	-	-	D	ko:K04763	-	ko00000,ko03036	Tyrosine recombinase XerC
LIMDEABD_00048	2.58e-18	-	3.5.4.40	-	F	ko:K20810	ko00130,ko01110,map00130,map01110	ko00000,ko00001,ko01000	Amidohydrolase family
LIMDEABD_00049	1.69e-159	-	-	-	-	-	-	-	-
LIMDEABD_00050	2.05e-237	lolE	-	-	M	ko:K09808,ko:K09815	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	FtsX-like permease family
LIMDEABD_00051	1.66e-64	rbfA	-	-	J	ko:K02834	-	ko00000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LIMDEABD_00052	4.03e-173	-	-	-	S	-	-	-	Outer membrane protein beta-barrel domain
LIMDEABD_00053	0.0	-	-	-	S	-	-	-	Bacterial Ig-like domain
LIMDEABD_00055	7.27e-101	folK	2.7.6.3	-	H	ko:K00950	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
LIMDEABD_00056	8.61e-254	holB	2.7.7.7	-	L	ko:K02341	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III, delta subunit
LIMDEABD_00058	3.62e-111	ppiA	5.2.1.8	-	O	ko:K03768	-	ko00000,ko01000,ko03110	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
LIMDEABD_00059	0.0	cap	-	-	S	-	-	-	Polysaccharide biosynthesis protein
LIMDEABD_00060	7.38e-121	kdsC	3.1.3.45	-	S	ko:K03270	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01005	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
LIMDEABD_00061	2.86e-153	-	-	-	S	-	-	-	NADP oxidoreductase coenzyme F420-dependent
LIMDEABD_00062	1.58e-285	yihY	-	-	S	ko:K07058	-	ko00000	Virulence factor BrkB
LIMDEABD_00063	1.28e-226	-	-	-	J	-	-	-	(SAM)-dependent
LIMDEABD_00064	6.54e-282	-	-	-	S	ko:K02238	-	ko00000,ko00002,ko02044	Competence protein
LIMDEABD_00065	9.96e-80	-	-	-	-	-	-	-	-
LIMDEABD_00067	3.08e-74	-	-	-	-	-	-	-	-
LIMDEABD_00068	2.14e-279	-	-	-	S	-	-	-	Phage portal protein
LIMDEABD_00069	1.3e-190	-	-	-	-	-	-	-	-
LIMDEABD_00070	3.93e-50	-	-	-	OU	-	-	-	Belongs to the peptidase S14 family
LIMDEABD_00071	3.4e-55	-	-	-	OU	-	-	-	Belongs to the peptidase S14 family
LIMDEABD_00075	5.63e-99	mqnA	1.21.98.1, 4.2.1.151	-	E	ko:K07081,ko:K11782,ko:K11784	ko00130,ko01110,map00130,map01110	ko00000,ko00001,ko01000	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
LIMDEABD_00076	8.3e-227	corA	-	-	P	ko:K03284	-	ko00000,ko02000	transport protein CorA
LIMDEABD_00077	1.59e-100	asnC	-	-	K	ko:K03718	-	ko00000,ko03000	Transcriptional regulator
LIMDEABD_00078	2.97e-268	kbl	2.3.1.29	-	H	ko:K00639	ko00260,map00260	ko00000,ko00001,ko01000,ko01007	Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA
LIMDEABD_00079	4.17e-231	galE	5.1.3.2	-	M	ko:K01784	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	3-beta hydroxysteroid dehydrogenase/isomerase family
LIMDEABD_00080	7.18e-114	ctc	-	-	J	ko:K02897	ko03010,map03010	ko00000,ko00001,ko00002,ko03011	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
LIMDEABD_00081	2.01e-121	pth	3.1.1.29	-	J	ko:K01056	-	ko00000,ko01000,ko03012	The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis
LIMDEABD_00082	2.58e-83	hslR	-	-	J	ko:K04762	-	ko00000,ko03110	S4 RNA-binding domain
LIMDEABD_00083	1.19e-91	-	-	-	CO	-	-	-	Antioxidant, AhpC TSA family
LIMDEABD_00084	7.18e-275	ftsW	-	-	D	ko:K03588	ko04112,map04112	ko00000,ko00001,ko02000,ko03036	Belongs to the SEDS family
LIMDEABD_00085	3.92e-305	murD	6.3.2.9	-	M	ko:K01925	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LIMDEABD_00086	1.36e-269	mraY	2.7.8.13	-	M	ko:K01000	ko00550,ko01100,ko01502,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LIMDEABD_00087	0.0	murE	6.3.2.13	-	M	ko:K01928	ko00300,ko00550,map00300,map00550	ko00000,ko00001,ko01000,ko01011	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LIMDEABD_00088	0.0	ftsI	3.4.16.4	-	M	ko:K03587	ko00550,ko01501,map00550,map01501	ko00000,ko00001,ko01000,ko01011,ko03036	Cell division protein FtsI
LIMDEABD_00090	3.73e-195	rsmH	2.1.1.199	-	H	ko:K03438	-	ko00000,ko01000,ko03009	Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
LIMDEABD_00096	1.78e-86	-	-	-	K	-	-	-	WYL domain
LIMDEABD_00097	1.23e-05	-	-	-	L	-	-	-	Phage integrase family
LIMDEABD_00098	5.79e-181	-	-	-	I	-	-	-	Phosphate acyltransferases
LIMDEABD_00099	5.61e-227	-	-	-	S	-	-	-	Acetyltransferase (GNAT) domain
LIMDEABD_00100	1.66e-276	-	-	-	-	-	-	-	-
LIMDEABD_00102	3.39e-282	-	-	-	T	ko:K07713	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	Sigma-54 interaction domain protein
LIMDEABD_00103	0.0	-	-	-	T	-	-	-	histidine kinase DNA gyrase B
LIMDEABD_00104	8.57e-71	-	-	-	-	-	-	-	-
LIMDEABD_00105	6.03e-292	uhpC_2	-	-	G	ko:K07783	ko02020,map02020	ko00000,ko00001,ko02000	Transporter, major facilitator family protein
LIMDEABD_00106	3.58e-172	-	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Psort location Cytoplasmic, score 8.96
LIMDEABD_00107	8.37e-205	natA	-	-	S	ko:K01990	-	ko00000,ko00002,ko02000	Domain of unknown function (DUF4162)
LIMDEABD_00108	3.44e-253	natB	-	-	CP	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
LIMDEABD_00109	1.6e-287	pgk	2.7.2.3	-	G	ko:K00927	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the phosphoglycerate kinase family
LIMDEABD_00110	0.0	pepO	3.4.24.71	-	O	ko:K01415,ko:K07386	-	ko00000,ko01000,ko01002,ko04147	Peptidase family M13
LIMDEABD_00111	0.0	-	-	-	T	-	-	-	His Kinase A (phosphoacceptor) domain
LIMDEABD_00112	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00113	0.0	-	-	-	K	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_00114	8.58e-226	-	-	-	S	ko:K21571	-	ko00000	SusE outer membrane protein
LIMDEABD_00115	0.0	-	-	-	G	-	-	-	COG NOG23094 non supervised orthologous group
LIMDEABD_00116	0.0	-	-	-	Q	-	-	-	COG NOG08355 non supervised orthologous group
LIMDEABD_00117	2.97e-113	-	-	-	S	-	-	-	Domain of unknown function (DUF5040)
LIMDEABD_00118	0.0	-	-	-	G	-	-	-	Melibiase
LIMDEABD_00119	0.0	-	3.2.1.31	-	G	ko:K01195	ko00040,ko00531,ko00860,ko00944,ko00983,ko01100,ko01110,ko04142,map00040,map00531,map00860,map00944,map00983,map01100,map01110,map04142	ko00000,ko00001,ko00002,ko01000	Glycosyl hydrolase family 2, sugar binding domain protein
LIMDEABD_00120	9.84e-245	-	-	-	G	-	-	-	Glycosyl Hydrolase Family 88
LIMDEABD_00121	2.36e-254	-	-	-	S	-	-	-	alpha beta
LIMDEABD_00122	0.0	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 2 family
LIMDEABD_00123	3.77e-133	-	3.2.1.23	-	G	ko:K12308	ko00052,map00052	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 35 family
LIMDEABD_00124	0.0	-	3.2.1.21	GH3	G	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	ko00000,ko00001,ko01000	Fibronectin type III-like domain
LIMDEABD_00125	3.32e-253	-	-	-	G	-	-	-	Glycosyl hydrolases family 43
LIMDEABD_00126	4e-186	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 43 family
LIMDEABD_00127	0.0	-	-	-	M	ko:K07001	-	ko00000	Patatin-like phospholipase
LIMDEABD_00128	4.63e-231	pheS	6.1.1.20	-	J	ko:K01889	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LIMDEABD_00129	0.0	-	-	-	S	-	-	-	Tetratricopeptide repeat
LIMDEABD_00130	2.06e-177	envC	-	-	D	-	-	-	peptidase
LIMDEABD_00131	1e-96	ybeY	-	-	S	-	-	-	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LIMDEABD_00133	0.0	gidA	-	-	D	ko:K03495	-	ko00000,ko03016,ko03036	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
LIMDEABD_00134	2.65e-217	ilvE	2.6.1.42	-	EH	ko:K00826	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Amino-transferase class IV
LIMDEABD_00135	0.0	metG	6.1.1.10	-	J	ko:K01874	ko00450,ko00970,map00450,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LIMDEABD_00136	0.0	dpp11	-	-	E	-	-	-	Peptidase S46
LIMDEABD_00137	4.49e-208	nadA	2.5.1.72	-	H	ko:K03517	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LIMDEABD_00139	4.92e-226	mrp	-	-	D	ko:K03593	-	ko00000,ko03029,ko03036	Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP
LIMDEABD_00140	0.0	sppA	-	-	OU	ko:K04773	-	ko00000,ko01000,ko01002	Peptidase family S49
LIMDEABD_00141	3.62e-15	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
LIMDEABD_00142	4.74e-92	queD	4.1.2.50, 4.2.3.12	-	H	ko:K01737	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000,ko03016	6-pyruvoyl tetrahydropterin synthase
LIMDEABD_00143	0.0	polA	2.7.7.7	-	L	ko:K02335	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440	ko00000,ko00001,ko01000,ko03032,ko03400	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIMDEABD_00144	2.76e-208	gpr	-	-	C	ko:K19265	-	ko00000,ko01000	Aldo/keto reductase family
LIMDEABD_00145	3.17e-142	-	-	-	M	-	-	-	COG NOG27406 non supervised orthologous group
LIMDEABD_00146	1.02e-145	-	-	-	S	-	-	-	COG NOG26965 non supervised orthologous group
LIMDEABD_00147	0.0	-	-	-	S	-	-	-	Tetratricopeptide repeat
LIMDEABD_00148	0.0	-	3.2.1.177	GH31	G	ko:K01811	-	ko00000,ko01000	Belongs to the glycosyl hydrolase 31 family
LIMDEABD_00149	0.0	-	-	-	C	-	-	-	C terminal of Calcineurin-like phosphoesterase
LIMDEABD_00150	0.0	-	-	-	S	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_00151	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00152	2.07e-292	-	-	-	U	-	-	-	domain, Protein
LIMDEABD_00153	7.08e-73	-	-	-	U	-	-	-	domain, Protein
LIMDEABD_00154	3.09e-140	folE	3.5.4.16	-	H	ko:K01495	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	GTP cyclohydrolase
LIMDEABD_00155	1.67e-225	-	-	-	S	-	-	-	Oxidoreductase NAD-binding domain protein
LIMDEABD_00156	3.63e-136	rdgB	3.6.1.66	-	F	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LIMDEABD_00157	8.57e-96	-	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ABC transporter, ATP-binding protein
LIMDEABD_00158	1.03e-126	-	-	-	-	-	-	-	-
LIMDEABD_00159	5.97e-205	-	-	-	E	-	-	-	haloacid dehalogenase-like hydrolase
LIMDEABD_00160	3.19e-14	-	-	-	-	-	-	-	-
LIMDEABD_00161	9.62e-103	-	-	-	C	-	-	-	Nitroreductase family
LIMDEABD_00162	0.0	-	-	-	T	-	-	-	Psort location CytoplasmicMembrane, score
LIMDEABD_00163	0.0	recJ	-	-	L	ko:K07462	ko03410,ko03430,ko03440,map03410,map03430,map03440	ko00000,ko00001,ko01000,ko03400	DHH family
LIMDEABD_00164	1e-138	lipB	2.3.1.181	-	H	ko:K03801	ko00785,ko01100,map00785,map01100	ko00000,ko00001,ko01000	Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate
LIMDEABD_00165	1.7e-202	lipA	2.8.1.8	-	H	ko:K03644	ko00785,ko01100,map00785,map01100	ko00000,ko00001,ko01000	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LIMDEABD_00167	1.93e-203	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
LIMDEABD_00169	1.11e-133	rnhB	3.1.26.4	-	L	ko:K03470	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LIMDEABD_00170	1.52e-98	-	-	-	U	ko:K03559	-	ko00000,ko02000	Biopolymer transport protein ExbD/TolR
LIMDEABD_00171	5.32e-117	-	-	-	U	-	-	-	Biopolymer transport protein ExbD/TolR
LIMDEABD_00173	1.43e-142	exbB	-	-	U	ko:K03561	-	ko00000,ko02000	MotA TolQ ExbB proton channel family
LIMDEABD_00174	1.03e-223	ansA	3.5.1.1	-	EJ	ko:K01424	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110	ko00000,ko00001,ko01000	Asparaginase
LIMDEABD_00175	4.14e-51	-	-	-	S	-	-	-	COG NOG16854 non supervised orthologous group
LIMDEABD_00176	2.88e-164	tatD	-	-	L	ko:K03424	-	ko00000,ko01000	TatD related DNase
LIMDEABD_00177	2.41e-241	dprA	-	-	LU	ko:K04096	-	ko00000	DNA protecting protein DprA
LIMDEABD_00179	0.0	hsdR	3.1.21.3	-	L	ko:K01153	-	ko00000,ko01000,ko02048	Subunit R is required for both nuclease and ATPase activities, but not for modification
LIMDEABD_00180	1.18e-87	-	-	-	S	-	-	-	FRG
LIMDEABD_00181	8e-51	-	3.1.21.3	-	V	ko:K01154	-	ko00000,ko01000,ko02048	type i restriction
LIMDEABD_00183	0.0	-	2.1.1.72	-	V	ko:K03427	-	ko00000,ko01000,ko02048	type I restriction-modification system
LIMDEABD_00184	4.27e-52	-	-	-	S	-	-	-	Plasmid recombination enzyme
LIMDEABD_00185	0.0	-	-	-	M	-	-	-	Outer membrane protein beta-barrel family
LIMDEABD_00186	4.14e-18	-	-	-	S	-	-	-	Peptidase C10 family
LIMDEABD_00188	1.68e-267	-	-	-	V	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 type transporter
LIMDEABD_00189	1.24e-247	-	-	-	S	ko:K01992	-	ko00000,ko00002,ko02000	ABC-2 family transporter protein
LIMDEABD_00190	1.64e-202	-	-	-	M	ko:K01993	-	ko00000	Biotin-lipoyl like
LIMDEABD_00191	8.27e-279	-	-	-	MU	-	-	-	Outer membrane efflux protein
LIMDEABD_00192	5.71e-204	ribD	1.1.1.193, 3.5.4.26	-	H	ko:K11752	ko00740,ko01100,ko01110,ko02024,map00740,map01100,map01110,map02024	ko00000,ko00001,ko00002,ko01000	Riboflavin biosynthesis protein RibD
LIMDEABD_00193	1.91e-221	-	-	-	S	ko:K07098	-	ko00000	Calcineurin-like phosphoesterase superfamily domain
LIMDEABD_00194	1.19e-294	-	-	-	S	-	-	-	COG NOG10142 non supervised orthologous group
LIMDEABD_00195	2.34e-164	ybdG_2	-	-	M	ko:K16053	-	ko00000,ko02000	Psort location CytoplasmicMembrane, score
LIMDEABD_00196	7.21e-62	-	-	-	S	-	-	-	Domain of unknown function (DUF4491)
LIMDEABD_00197	6e-211	-	-	-	M	ko:K07282	-	ko00000	Bacterial capsule synthesis protein
LIMDEABD_00198	2.27e-134	rbr	-	-	C	-	-	-	Ferritin-like domain
LIMDEABD_00199	0.0	-	-	-	S	-	-	-	ATP-binding cassette protein, ChvD family
LIMDEABD_00200	7.07e-291	hisS	6.1.1.21	-	J	ko:K01892	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Histidyl-tRNA synthetase
LIMDEABD_00201	0.0	ctpA	3.4.21.102	-	M	ko:K03797	-	ko00000,ko01000,ko01002	Belongs to the peptidase S41A family
LIMDEABD_00202	8.87e-53	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_00203	2.75e-187	-	-	-	S	ko:K08974	-	ko00000	Domain of unknown function (DUF368)
LIMDEABD_00204	2.39e-151	aroE	1.1.1.25	-	E	ko:K00014	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Shikimate dehydrogenase substrate binding domain
LIMDEABD_00207	0.0	dnaE	2.7.7.7	-	L	ko:K02337	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase alpha chain like domain
LIMDEABD_00208	2.19e-67	trxA	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Belongs to the thioredoxin family
LIMDEABD_00209	3.74e-204	-	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Aldose 1-epimerase
LIMDEABD_00210	2.01e-93	-	-	-	C	-	-	-	Nitroreductase family
LIMDEABD_00211	0.0	htpG	-	-	T	ko:K04079	ko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418	ko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147	histidine kinase DNA gyrase B
LIMDEABD_00212	9.66e-293	-	-	-	CO	-	-	-	COG NOG24773 non supervised orthologous group
LIMDEABD_00213	8.13e-289	-	-	-	S	ko:K06158	-	ko00000,ko03012	glycosyl transferase family 2
LIMDEABD_00214	3.34e-89	ybgC	-	-	S	ko:K07107	-	ko00000,ko01000	Thioesterase-like superfamily
LIMDEABD_00215	3.52e-103	ribF	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	FAD synthetase
LIMDEABD_00216	4.75e-139	rex	-	-	K	ko:K01926	-	ko00000,ko03000	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
LIMDEABD_00217	0.0	lysM	-	-	EM	-	-	-	Lysin motif
LIMDEABD_00218	1.82e-178	dnaQ	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	EXOIII
LIMDEABD_00219	9.66e-252	dnaN	2.7.7.7	-	L	ko:K02338	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria
LIMDEABD_00220	9.88e-206	udp	2.4.2.3	-	F	ko:K00757	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Phosphorylase superfamily
LIMDEABD_00221	0.0	glmM	5.4.2.8	-	G	ko:K01840	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
LIMDEABD_00222	1.16e-69	nlpE	-	-	MP	-	-	-	lipoprotein NlpE involved in copper resistance
LIMDEABD_00223	2.05e-303	dapE	-	-	E	-	-	-	Peptidase dimerisation domain
LIMDEABD_00224	1.25e-167	-	3.1.3.25	-	G	ko:K01092	ko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070	ko00000,ko00001,ko00002,ko01000	Inositol monophosphatase family
LIMDEABD_00225	0.0	glmS	2.6.1.16	-	M	ko:K00820	ko00250,ko00520,ko01100,ko01130,ko04931,map00250,map00520,map01100,map01130,map04931	ko00000,ko00001,ko01000,ko01002	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
LIMDEABD_00226	6.68e-182	-	-	-	E	-	-	-	Alpha/beta hydrolase family
LIMDEABD_00227	2.02e-147	-	-	-	S	-	-	-	Conserved hypothetical protein (DUF2461)
LIMDEABD_00228	3.6e-303	glyA	2.1.2.1	-	E	ko:K00600	ko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LIMDEABD_00229	1.67e-162	fabG	1.1.1.100	-	IQ	ko:K00059	ko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	KR domain
LIMDEABD_00230	6.5e-188	-	-	-	M	-	-	-	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LIMDEABD_00231	4.53e-89	ptpA	3.1.3.48	-	T	ko:K01104	-	ko00000,ko01000	Low molecular weight phosphotyrosine protein phosphatase
LIMDEABD_00232	3.18e-120	tag	3.2.2.20	-	L	ko:K01246	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	DNA-3-methyladenine glycosylase
LIMDEABD_00233	2.01e-59	-	-	-	S	ko:K15977	-	ko00000	methylamine metabolic process
LIMDEABD_00234	1.43e-100	-	-	-	S	ko:K07109	-	ko00000	Bacterial protein of unknown function (YtfJ_HI0045)
LIMDEABD_00235	3.7e-261	-	-	-	M	-	-	-	Surface antigen
LIMDEABD_00236	0.0	-	2.7.8.43	-	S	ko:K03760,ko:K19353	ko00540,ko01503,map00540,map01503	ko00000,ko00001,ko00002,ko01000,ko01005	Arylsulfatase
LIMDEABD_00237	1.21e-25	-	-	-	S	-	-	-	Histone H1
LIMDEABD_00238	3.18e-207	-	-	-	M	ko:K03585	ko01501,ko01503,map01501,map01503	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIMDEABD_00239	0.0	bpeF	-	-	V	ko:K03296	-	ko00000	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIMDEABD_00240	1.56e-285	-	-	-	MU	ko:K18139,ko:K18300	ko01501,ko02024,map01501,map02024	ko00000,ko00001,ko00002,ko01504,ko02000	Efflux transporter, outer membrane factor
LIMDEABD_00241	0.0	feoB	-	-	P	ko:K04759	-	ko00000,ko02000	transporter of a GTP-driven Fe(2 ) uptake system
LIMDEABD_00242	1.3e-68	-	-	-	S	ko:K06518	-	ko00000,ko02000	LrgA family
LIMDEABD_00243	2.15e-145	lrgB	-	-	M	-	-	-	LrgB-like family
LIMDEABD_00244	1.94e-289	dapL	2.6.1.83	-	E	ko:K10206,ko:K14261	ko00300,ko01100,ko01110,ko01130,ko01230,map00300,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase class I and II
LIMDEABD_00245	3.57e-245	-	-	-	I	-	-	-	Acyltransferase family
LIMDEABD_00246	1.92e-94	ppiB	5.2.1.8	-	O	ko:K03767,ko:K03768	ko01503,ko04217,map01503,map04217	ko00000,ko00001,ko01000,ko03110,ko04147	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LIMDEABD_00247	2.42e-248	purT	2.1.2.2	-	F	ko:K08289	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
LIMDEABD_00248	3e-222	-	-	-	M	-	-	-	PQQ enzyme repeat
LIMDEABD_00250	8.44e-159	ftsE	-	-	D	ko:K09812	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03036	ABC transporter, ATP-binding protein
LIMDEABD_00251	0.0	gyrB	5.99.1.3	-	L	ko:K02470	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LIMDEABD_00252	2.7e-138	udk	2.7.1.48	-	F	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Cytidine monophosphokinase
LIMDEABD_00253	7.87e-140	-	-	-	L	-	-	-	COG NOG14720 non supervised orthologous group
LIMDEABD_00255	8.22e-09	-	-	-	-	-	-	-	-
LIMDEABD_00256	0.0	mutS	-	-	L	ko:K03555	ko03430,map03430	ko00000,ko00001,ko03400	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LIMDEABD_00257	2e-123	mug	-	-	L	-	-	-	DNA glycosylase
LIMDEABD_00258	4.11e-309	recD2_2	3.1.11.5	-	L	ko:K01144	-	ko00000,ko01000	PIF1-like helicase
LIMDEABD_00259	2.72e-121	-	-	-	S	-	-	-	COG NOG19144 non supervised orthologous group
LIMDEABD_00261	1.43e-112	rsmD	2.1.1.171	-	L	ko:K08316	-	ko00000,ko01000,ko03009	Conserved hypothetical protein 95
LIMDEABD_00263	2.52e-166	-	-	-	-	-	-	-	-
LIMDEABD_00265	2.93e-24	-	-	-	P	-	-	-	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIMDEABD_00266	6.44e-271	-	-	-	MU	-	-	-	Outer membrane efflux protein
LIMDEABD_00267	0.0	-	-	-	V	-	-	-	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIMDEABD_00268	4.64e-185	-	-	-	M	-	-	-	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIMDEABD_00269	1.25e-160	-	-	-	K	-	-	-	transcriptional regulator (AraC family)
LIMDEABD_00270	2.1e-239	patB	4.4.1.8	-	E	ko:K14155	ko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230	ko00000,ko00001,ko01000,ko01007	Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities
LIMDEABD_00271	1.89e-169	-	-	-	S	-	-	-	Endonuclease/Exonuclease/phosphatase family
LIMDEABD_00272	9.06e-170	-	-	-	EG	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00273	3.94e-143	-	-	-	M	-	-	-	Glycosyltransferase, group 2 family protein
LIMDEABD_00274	4.42e-175	msrA	1.8.4.11, 1.8.4.12	-	O	ko:K07304,ko:K12267	-	ko00000,ko01000	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LIMDEABD_00275	1.25e-244	hutI	3.5.2.7	-	F	ko:K01468	ko00340,ko01100,map00340,map01100	ko00000,ko00001,ko00002,ko01000	Amidohydrolase family
LIMDEABD_00276	0.0	hutH	4.3.1.3	-	E	ko:K01745	ko00340,ko01100,map00340,map01100	ko00000,ko00001,ko00002,ko01000	Histidine ammonia-lyase
LIMDEABD_00277	0.0	hutU	4.2.1.49	-	H	ko:K01712	ko00340,ko01100,map00340,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LIMDEABD_00278	0.0	ftcD	2.1.2.5, 4.3.1.4	-	E	ko:K00603,ko:K13990	ko00340,ko00670,ko01100,map00340,map00670,map01100	ko00000,ko00001,ko01000,ko03036,ko04147	Formiminotransferase domain, N-terminal subdomain
LIMDEABD_00279	0.0	-	-	-	H	ko:K02014	-	ko00000,ko02000	TonB-dependent receptor
LIMDEABD_00280	1.8e-289	-	2.5.1.76	-	E	ko:K15527	-	ko00000,ko01000	Pyridoxal-phosphate dependent enzyme
LIMDEABD_00281	1.73e-268	nspC	4.1.1.96	-	E	ko:K13747	ko00330,ko01100,map00330,map01100	ko00000,ko00001,ko01000	carboxynorspermidine decarboxylase
LIMDEABD_00282	2.59e-299	LYS1	1.5.1.7	-	E	ko:K00290	ko00300,ko00310,ko01100,ko01110,ko01130,ko01230,map00300,map00310,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Saccharopine dehydrogenase
LIMDEABD_00284	3.57e-243	-	-	-	V	-	-	-	Restriction endonuclease
LIMDEABD_00285	4.05e-92	-	1.14.13.22	-	S	ko:K03379	ko00930,ko01120,ko01220,map00930,map01120,map01220	ko00000,ko00001,ko01000	polysaccharide biosynthetic process
LIMDEABD_00286	7.92e-60	-	-	-	G	-	-	-	COG NOG13250 non supervised orthologous group
LIMDEABD_00287	3.91e-190	rfbA	2.7.7.24	-	M	ko:K00973	ko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LIMDEABD_00288	1.67e-98	rfbC	5.1.3.13	-	M	ko:K01790	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose
LIMDEABD_00289	2.15e-149	rfbD	1.1.1.133	-	M	ko:K00067	ko00521,ko00523,ko01130,map00521,map00523,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
LIMDEABD_00290	7.8e-240	rfbB	4.2.1.46	-	M	ko:K01710	ko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
LIMDEABD_00291	4.21e-100	ybaK	-	-	S	ko:K03976	-	ko00000,ko01000,ko03016	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LIMDEABD_00292	0.0	-	-	-	M	-	-	-	CarboxypepD_reg-like domain
LIMDEABD_00293	9.28e-130	-	-	-	S	-	-	-	HAD-hyrolase-like
LIMDEABD_00294	4.94e-36	-	-	-	P	ko:K07124	-	ko00000	Belongs to the short-chain dehydrogenases reductases (SDR) family
LIMDEABD_00295	9.65e-79	-	-	-	S	ko:K09922	-	ko00000	Putative member of DMT superfamily (DUF486)
LIMDEABD_00296	4.8e-151	vat_2	-	-	S	ko:K18234	-	ko00000,ko01000,ko01504	Bacterial transferase hexapeptide (six repeats)
LIMDEABD_00297	2.39e-263	fsr	-	-	EGP	ko:K08223	-	ko00000,ko02000	Transporter, major facilitator family protein
LIMDEABD_00298	8.37e-187	-	-	-	S	ko:K03453	-	ko00000	Sodium bile acid symporter family
LIMDEABD_00299	1.15e-88	-	-	-	S	ko:K09117	-	ko00000	YqeY-like protein
LIMDEABD_00300	7.42e-104	-	-	-	S	-	-	-	Acetyltransferase (GNAT) domain
LIMDEABD_00301	0.0	-	-	-	M	-	-	-	Fibronectin type 3 domain
LIMDEABD_00302	1.53e-303	-	-	-	E	-	-	-	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIMDEABD_00303	1.57e-88	mscL	-	-	M	ko:K03282	-	ko00000,ko02000	Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
LIMDEABD_00304	0.0	hppA	3.6.1.1	-	C	ko:K15987	ko00190,map00190	ko00000,ko00001,ko01000	Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane
LIMDEABD_00305	1.65e-203	yhiM	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00306	6.24e-128	-	-	-	S	ko:K07025	-	ko00000	IA, variant 3
LIMDEABD_00307	0.0	-	-	-	P	-	-	-	Carboxypeptidase regulatory-like domain
LIMDEABD_00308	1.75e-203	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00309	0.0	-	4.1.1.3, 6.4.1.1	-	C	ko:K01571,ko:K01960	ko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko02000	Conserved carboxylase domain
LIMDEABD_00310	1.89e-92	-	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
LIMDEABD_00312	4.96e-132	-	-	-	S	ko:K10716	-	ko00000,ko02000	Ion channel
LIMDEABD_00313	4.82e-166	-	-	-	G	-	-	-	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LIMDEABD_00314	2.42e-101	-	-	-	G	-	-	-	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LIMDEABD_00315	2.7e-165	-	-	-	-	-	-	-	-
LIMDEABD_00316	0.0	-	-	-	-	-	-	-	-
LIMDEABD_00317	1.28e-191	-	3.1.11.2	-	S	ko:K01142	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Endonuclease/Exonuclease/phosphatase family
LIMDEABD_00318	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00319	0.0	-	-	-	Q	ko:K21572	-	ko00000,ko02000	pyridine nucleotide-disulphide oxidoreductase
LIMDEABD_00320	0.0	-	-	-	S	-	-	-	Putative binding domain, N-terminal
LIMDEABD_00321	0.0	-	-	-	-	-	-	-	-
LIMDEABD_00322	0.0	-	-	-	G	-	-	-	Glycosyl hydrolase family 20, catalytic domain
LIMDEABD_00324	3.28e-296	nqrF	1.6.5.8	-	C	ko:K00351	-	ko00000,ko01000	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway
LIMDEABD_00325	1.61e-120	nqrE	1.6.5.8	-	C	ko:K00350	-	ko00000,ko01000	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LIMDEABD_00326	5.64e-144	nqrD	1.6.5.8	-	C	ko:K00349	-	ko00000,ko01000	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LIMDEABD_00327	1.15e-179	nqrC	1.6.5.8	-	C	ko:K00348	-	ko00000,ko01000	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LIMDEABD_00328	1.58e-243	nqrB	1.6.5.8	-	C	ko:K00347	-	ko00000,ko01000	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LIMDEABD_00329	3.16e-312	nqrA	1.6.5.8	-	C	ko:K00346	-	ko00000,ko01000	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LIMDEABD_00330	2.16e-107	-	-	-	L	ko:K03424	-	ko00000,ko01000	hydrolase, TatD family
LIMDEABD_00331	2.76e-158	hypB	-	-	H	ko:K22132	-	ko00000,ko03016	ThiF family
LIMDEABD_00332	3.31e-194	hprA	1.1.1.29	-	CH	ko:K00018	ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIMDEABD_00333	1.54e-21	-	-	-	M	-	-	-	Glycosyltransferase like family 2
LIMDEABD_00334	1.24e-96	proX	-	-	S	ko:K19055	-	ko00000,ko01000,ko03016	YbaK proline--tRNA ligase associated domain protein
LIMDEABD_00335	0.0	gpmI	5.4.2.12	-	G	ko:K15633	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LIMDEABD_00336	0.0	alaS	6.1.1.7	-	J	ko:K01872	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LIMDEABD_00337	1.51e-217	-	-	-	M	-	-	-	Peptidase family M23
LIMDEABD_00338	2.06e-194	-	-	-	M	-	-	-	Peptidase family M23
LIMDEABD_00339	4.29e-113	-	-	-	S	-	-	-	Haloacid dehalogenase-like hydrolase
LIMDEABD_00340	0.0	-	-	-	L	-	-	-	PD-(D/E)XK nuclease superfamily
LIMDEABD_00341	4.3e-141	-	-	-	S	-	-	-	Putative auto-transporter adhesin, head GIN domain
LIMDEABD_00342	0.0	addA	-	-	L	-	-	-	UvrD/REP helicase N-terminal domain
LIMDEABD_00343	1.55e-259	-	-	-	P	ko:K06148	-	ko00000,ko02000	ABC transporter
LIMDEABD_00344	5.41e-127	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_00345	2.22e-22	-	-	-	U	-	-	-	Belongs to the peptidase S26 family
LIMDEABD_00346	2.12e-174	tsf	-	-	J	ko:K02357	-	ko00000,ko03012,ko03029	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LIMDEABD_00347	3.18e-86	rpsB	-	-	J	ko:K02967	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS2 family
LIMDEABD_00348	0.0	aspS	6.1.1.12	-	J	ko:K01876	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp)
LIMDEABD_00349	0.0	-	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	Alpha-galactosidase
LIMDEABD_00350	2.2e-185	-	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
LIMDEABD_00352	5.68e-216	-	-	-	P	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_00353	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00355	3.88e-91	tadA	3.5.4.33	-	FJ	ko:K11991	-	ko00000,ko01000,ko03016	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)
LIMDEABD_00356	2.14e-175	-	-	-	S	-	-	-	Tetratricopeptide repeat
LIMDEABD_00357	1.25e-181	queG	1.17.99.6	-	C	ko:K18979	-	ko00000,ko01000,ko03016	Domain of unknown function (DUF1730)
LIMDEABD_00358	0.0	-	6.2.1.3	-	I	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	Long-chain acyl-CoA synthetase
LIMDEABD_00359	2.08e-240	asnA	6.3.1.1	-	E	ko:K01914	ko00250,ko00460,ko01100,ko01110,ko01230,map00250,map00460,map01100,map01110,map01230	ko00000,ko00001,ko01000	Aspartate-ammonia ligase
LIMDEABD_00360	0.0	-	-	-	P	-	-	-	Protein of unknown function (DUF2723)
LIMDEABD_00361	2.06e-236	rhlE	3.6.4.13	-	L	ko:K11927	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Belongs to the DEAD box helicase family
LIMDEABD_00362	0.0	cysS	6.1.1.16	-	J	ko:K01883	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
LIMDEABD_00363	1.98e-57	ydjH_1	2.7.1.4	-	G	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	pfkB family
LIMDEABD_00365	3.51e-305	-	-	-	V	-	-	-	Polysaccharide biosynthesis C-terminal domain
LIMDEABD_00366	5.31e-126	-	-	-	F	-	-	-	Cytidylate kinase-like family
LIMDEABD_00367	2.53e-245	prfB	-	-	J	ko:K02836	-	ko00000,ko03012	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
LIMDEABD_00369	3.2e-246	-	-	-	S	-	-	-	Protein of unknown function (DUF1343)
LIMDEABD_00370	1.04e-24	-	-	-	L	ko:K07461	-	ko00000	GIY-YIG catalytic domain
LIMDEABD_00371	5.65e-95	maa	2.3.1.18, 2.3.1.79	-	K	ko:K00633,ko:K00661	-	ko00000,ko01000	Bacterial transferase hexapeptide repeat protein
LIMDEABD_00372	9.16e-18	-	-	-	C	-	-	-	4Fe-4S binding domain
LIMDEABD_00373	6.58e-293	serS	6.1.1.11	-	J	ko:K01875	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Seryl-tRNA synthetase N-terminal domain
LIMDEABD_00375	5e-305	-	-	-	E	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_00376	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00378	0.0	-	-	-	O	-	-	-	Peptidase, S8 S53 family
LIMDEABD_00379	7.41e-114	-	-	-	-	-	-	-	-
LIMDEABD_00380	7.61e-225	-	-	-	S	ko:K21449	-	ko00000,ko02000	Bacterial surface protein 26-residue PARCEL
LIMDEABD_00382	0.0	prtQ	-	-	O	ko:K08303	ko05120,map05120	ko00000,ko00001,ko01000,ko01002	Collagenase
LIMDEABD_00383	4.63e-189	-	2.1.1.191	-	J	ko:K06969	-	ko00000,ko01000,ko03009	S-adenosylmethionine-dependent methyltransferase
LIMDEABD_00385	4.71e-99	-	-	-	-	-	-	-	-
LIMDEABD_00386	7.24e-121	-	-	-	P	ko:K07240	-	ko00000,ko02000	Psort location CytoplasmicMembrane, score
LIMDEABD_00387	4.55e-93	-	-	-	P	ko:K07240	-	ko00000,ko02000	Chromate transporter
LIMDEABD_00388	3.75e-150	-	-	-	C	-	-	-	NADH ubiquinone oxidoreductase, 20 Kd subunit
LIMDEABD_00389	1.35e-306	-	-	-	C	-	-	-	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
LIMDEABD_00391	2.65e-114	-	-	-	C	ko:K12140	-	ko00000,ko01000	Hydrogenase 4 membrane
LIMDEABD_00392	7.55e-161	-	-	-	C	-	-	-	NADH dehydrogenase
LIMDEABD_00393	0.0	-	-	-	CP	ko:K12137	-	ko00000,ko01000	Proton-conducting membrane transporter
LIMDEABD_00394	3.98e-132	rsmE	2.1.1.193	-	J	ko:K09761	-	ko00000,ko01000,ko03009	Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
LIMDEABD_00395	0.0	dcp	3.4.15.5	-	E	ko:K01284	-	ko00000,ko01000,ko01002	Peptidase family M3
LIMDEABD_00396	0.0	dcp	3.4.15.5, 3.4.24.70	-	E	ko:K01284,ko:K01414	-	ko00000,ko01000,ko01002	Peptidase family M3
LIMDEABD_00397	8.69e-105	-	-	-	-	-	-	-	-
LIMDEABD_00398	1.66e-84	-	-	-	K	ko:K03088	-	ko00000,ko03021	RNA polymerase sigma-70 factor
LIMDEABD_00399	2.65e-162	-	-	-	PT	-	-	-	COG3712 Fe2 -dicitrate sensor, membrane component
LIMDEABD_00400	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00401	0.0	-	-	-	S	ko:K21572	-	ko00000,ko02000	RagB SusD family protein
LIMDEABD_00402	1.53e-188	-	-	-	S	-	-	-	phosphatase family
LIMDEABD_00404	8.29e-65	-	-	-	S	-	-	-	C terminal of Calcineurin-like phosphoesterase
LIMDEABD_00405	3.14e-133	-	-	-	-	-	-	-	-
LIMDEABD_00406	1.28e-45	-	-	-	-	-	-	-	-
LIMDEABD_00407	2.87e-180	-	-	-	Q	ko:K21572	-	ko00000,ko02000	pyridine nucleotide-disulphide oxidoreductase
LIMDEABD_00408	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00409	7.7e-57	-	-	-	-	-	-	-	-
LIMDEABD_00410	1.21e-110	-	-	-	S	-	-	-	Endonuclease/Exonuclease/phosphatase family
LIMDEABD_00412	1.85e-283	nupG	-	-	G	ko:K03289,ko:K11537	-	ko00000,ko02000	transport of nucleosides, permease protein K03289
LIMDEABD_00414	4.27e-154	-	-	-	C	-	-	-	Nitroreductase family
LIMDEABD_00415	0.0	-	-	-	M	-	-	-	Psort location OuterMembrane, score
LIMDEABD_00416	2.23e-184	amiA	3.5.1.28	-	M	ko:K01448	ko01503,map01503	ko00000,ko00001,ko00002,ko01000,ko01011,ko03036	Ami_3
LIMDEABD_00417	3.71e-185	-	-	-	Q	ko:K02067	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	virulence factor Mce family protein
LIMDEABD_00418	0.0	mutS2	-	-	L	ko:K07456	ko03430,map03430	ko00000,ko00001,ko03400	Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity
LIMDEABD_00419	0.0	alr	5.1.1.1, 6.3.2.10	-	M	ko:K01775,ko:K01929	ko00300,ko00473,ko00550,ko01100,ko01502,map00300,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LIMDEABD_00420	4.16e-146	rsmI_1	2.1.1.198	-	H	ko:K07056	-	ko00000,ko01000,ko03009	S-adenosylmethionine-dependent methyltransferase, YraL family
LIMDEABD_00421	3.94e-105	grpE	-	-	O	ko:K03687	-	ko00000,ko03029,ko03110	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LIMDEABD_00422	2.28e-230	dnaJ	-	-	O	ko:K03686	-	ko00000,ko03029,ko03110	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
LIMDEABD_00423	2.49e-58	-	-	-	-	-	-	-	-
LIMDEABD_00424	0.0	mutL	-	-	L	ko:K03572	ko03430,map03430	ko00000,ko00001,ko03400	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LIMDEABD_00425	1.85e-137	-	3.4.21.105	-	S	ko:K09650	-	ko00000,ko01000,ko01002,ko03029	Rhomboid family
LIMDEABD_00426	8.64e-219	-	-	-	S	-	-	-	Endonuclease/Exonuclease/phosphatase family
LIMDEABD_00427	3.4e-148	dcp	3.4.15.5	-	E	ko:K01284	-	ko00000,ko01000,ko01002	Peptidase family M3
LIMDEABD_00428	7.24e-283	aspA	4.3.1.1	-	E	ko:K01744	ko00250,ko01100,map00250,map01100	ko00000,ko00001,ko01000	Aspartate ammonia-lyase
LIMDEABD_00429	8.82e-84	tabA_2	-	-	G	-	-	-	YhcH YjgK YiaL family
LIMDEABD_00432	1.51e-250	mmdB	4.1.1.3, 4.3.99.2	-	C	ko:K01572,ko:K20509	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000,ko02000	Na+-transporting oxaloacetate decarboxylase beta subunit
LIMDEABD_00433	1.77e-284	-	1.1.1.22	-	M	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LIMDEABD_00434	7.51e-265	fprA	1.6.3.4	-	C	ko:K22405	-	ko00000,ko01000	Metallo-beta-lactamase domain protein
LIMDEABD_00436	3.66e-218	-	-	-	O	-	-	-	Peptidase, S8 S53 family
LIMDEABD_00438	1.44e-106	-	-	-	S	-	-	-	Pfam:SusD
LIMDEABD_00439	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00440	2.93e-222	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_00441	2.11e-311	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00442	7.78e-25	-	-	-	S	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_00444	1.56e-277	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_00445	2.23e-152	-	3.1.2.21	-	I	ko:K01071	ko00061,ko01100,map00061,map01100	ko00000,ko00001,ko01000,ko01004	Acyl-ACP thioesterase
LIMDEABD_00446	6.42e-89	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00447	4.86e-133	-	-	-	S	-	-	-	Protein of unknown function (DUF2975)
LIMDEABD_00448	4.31e-35	-	-	-	K	ko:K07727	-	ko00000,ko03000	Cro/C1-type HTH DNA-binding domain
LIMDEABD_00449	0.0	-	-	-	S	ko:K07263	-	ko00000,ko01000,ko01002	Belongs to the peptidase M16 family
LIMDEABD_00450	0.0	-	-	-	M	-	-	-	Sulfatase
LIMDEABD_00451	4.58e-200	-	-	-	-	-	-	-	-
LIMDEABD_00452	0.0	-	-	-	P	-	-	-	Psort location OuterMembrane, score
LIMDEABD_00453	5.47e-236	-	-	-	S	-	-	-	Endonuclease exonuclease phosphatase family
LIMDEABD_00454	1.23e-163	-	-	-	F	ko:K01173	ko04210,map04210	ko00000,ko00001,ko03029	DNA RNA non-specific endonuclease
LIMDEABD_00455	2.09e-44	-	-	-	-	-	-	-	-
LIMDEABD_00456	2.43e-81	-	-	-	S	-	-	-	Domain of unknown function (DUF4293)
LIMDEABD_00457	3.48e-210	arnC	-	-	M	-	-	-	Glycosyltransferase like family 2
LIMDEABD_00459	4.81e-124	yciO	-	-	J	-	-	-	Belongs to the SUA5 family
LIMDEABD_00460	1.14e-198	mltG	-	-	S	ko:K07082	-	ko00000	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LIMDEABD_00461	2.48e-205	fabK	1.3.1.9	-	S	ko:K02371	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	FMN-dependent dehydrogenase
LIMDEABD_00462	2.23e-174	-	-	-	S	-	-	-	NYN domain
LIMDEABD_00463	5.57e-55	ycnE	-	-	S	-	-	-	Antibiotic biosynthesis monooxygenase
LIMDEABD_00464	1.73e-170	-	1.15.1.1	-	C	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	ko00000,ko00001,ko01000	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LIMDEABD_00465	0.0	-	-	-	H	-	-	-	cobalamin-transporting ATPase activity
LIMDEABD_00466	0.0	-	-	-	G	-	-	-	Tetratricopeptide repeat protein
LIMDEABD_00467	1.6e-64	-	-	-	O	ko:K07397	-	ko00000	OsmC-like protein
LIMDEABD_00468	1.76e-248	-	-	-	MU	-	-	-	Outer membrane efflux protein
LIMDEABD_00469	0.0	-	-	-	V	-	-	-	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIMDEABD_00470	1.38e-207	-	-	-	M	-	-	-	Biotin-lipoyl like
LIMDEABD_00471	1.22e-251	doxX	-	-	S	-	-	-	DoxX family
LIMDEABD_00472	3.74e-144	tmk	2.7.4.9	-	F	ko:K00943	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LIMDEABD_00473	1.54e-271	sufS	2.8.1.7, 4.4.1.16	-	E	ko:K11717	ko00450,ko01100,map00450,map01100	ko00000,ko00001,ko01000	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LIMDEABD_00474	9.84e-160	sufD	-	-	O	ko:K09015	-	ko00000	Uncharacterized protein family (UPF0051)
LIMDEABD_00475	4.08e-168	sufC	-	-	O	ko:K09013	-	ko00000,ko02000	ABC transporter
LIMDEABD_00476	0.0	sufB	-	-	O	ko:K09014	-	ko00000	Uncharacterized protein family (UPF0051)
LIMDEABD_00478	2e-206	-	-	-	O	-	-	-	Domain of unknown function (DUF4861)
LIMDEABD_00481	4e-131	-	-	-	U	ko:K05595	-	ko00000,ko02000	MarC family integral membrane protein
LIMDEABD_00482	2.97e-167	-	-	-	L	-	-	-	DNA metabolism protein
LIMDEABD_00483	4.05e-285	-	-	-	S	-	-	-	DNA-binding protein with the Helix-hairpin-helix motif
LIMDEABD_00484	1.93e-51	ykfA	-	-	S	-	-	-	RNA recognition motif
LIMDEABD_00485	2.06e-61	cspG	-	-	K	-	-	-	Cold-shock DNA-binding domain protein
LIMDEABD_00487	1.42e-259	-	-	-	P	-	-	-	Phosphate-selective porin O and P
LIMDEABD_00488	3.82e-110	-	2.7.7.7	-	L	ko:K02342	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	3' exoribonuclease, RNase T-like
LIMDEABD_00489	1.18e-186	-	-	-	G	-	-	-	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LIMDEABD_00490	0.0	-	3.2.1.21	GH3	G	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	ko00000,ko00001,ko01000	Fibronectin type III-like domain
LIMDEABD_00491	0.0	guaA	6.3.5.2	-	F	ko:K01951	ko00230,ko00983,ko01100,map00230,map00983,map01100	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the synthesis of GMP from XMP
LIMDEABD_00493	3.99e-315	guaB	1.1.1.205	-	F	ko:K00088	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth
LIMDEABD_00495	2.33e-58	-	-	-	CO	-	-	-	Thioredoxin
LIMDEABD_00496	5.97e-176	panB	2.1.2.11	-	H	ko:K00606	ko00770,ko01100,ko01110,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate
LIMDEABD_00497	6.98e-104	spoU	-	-	J	-	-	-	SpoU rRNA Methylase family
LIMDEABD_00499	0.0	glnS	6.1.1.18	-	J	ko:K01886	ko00970,ko01100,map00970,map01100	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	tRNA synthetases class I (E and Q), anti-codon binding domain
LIMDEABD_00500	1.25e-75	-	-	-	T	-	-	-	ATPase histidine kinase DNA gyrase B HSP90 domain protein
LIMDEABD_00501	6.08e-115	-	-	-	-	-	-	-	-
LIMDEABD_00502	4.39e-223	-	-	-	S	ko:K07011	-	ko00000	Glycosyl transferase family group 2
LIMDEABD_00503	1.24e-190	waaM	2.3.1.241	-	M	ko:K02517	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01005	Bacterial lipid A biosynthesis acyltransferase
LIMDEABD_00504	8.86e-287	-	-	-	S	-	-	-	Domain of unknown function (DUF389)
LIMDEABD_00505	8.58e-148	rsmI	2.1.1.198	-	H	ko:K07056	-	ko00000,ko01000,ko03009	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LIMDEABD_00506	4.3e-70	-	-	-	M	-	-	-	Membrane
LIMDEABD_00507	1.15e-253	-	3.2.1.21	GH3	G	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 3 family
LIMDEABD_00508	3.09e-10	-	-	-	S	-	-	-	Fimbrillin-like
LIMDEABD_00509	5.59e-47	-	-	-	S	-	-	-	C terminal of Calcineurin-like phosphoesterase
LIMDEABD_00511	3.09e-174	-	-	-	P	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_00512	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00513	5.58e-05	-	-	-	P	-	-	-	CarboxypepD_reg-like domain
LIMDEABD_00514	3.62e-39	-	-	-	PT	-	-	-	Domain of unknown function (DUF4974)
LIMDEABD_00515	4.75e-34	-	-	-	K	-	-	-	Sigma-70, region 4
LIMDEABD_00516	4.8e-61	-	-	-	S	-	-	-	Endonuclease/Exonuclease/phosphatase family
LIMDEABD_00517	4.17e-242	ychF	-	-	J	ko:K06942	-	ko00000,ko03009	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner
LIMDEABD_00518	0.0	gltX	6.1.1.17	-	J	ko:K01885	ko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LIMDEABD_00519	8.35e-241	-	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Converts alpha-aldose to the beta-anomer
LIMDEABD_00520	0.0	-	-	-	P	ko:K02014	-	ko00000,ko02000	TonB dependent receptor
LIMDEABD_00521	1.3e-99	pnuC	-	-	H	ko:K03811	-	ko00000,ko02000	nicotinamide mononucleotide transporter
LIMDEABD_00522	7.3e-91	-	-	-	N	-	-	-	Trehalose utilisation
LIMDEABD_00523	7.17e-77	-	-	-	S	-	-	-	YjbR
LIMDEABD_00525	1.16e-266	uxuA	4.2.1.8	-	G	ko:K01686	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko00002,ko01000	D-mannonate dehydratase (UxuA)
LIMDEABD_00526	3.13e-166	uxuB	-	-	IQ	-	-	-	Oxidoreductase, short chain dehydrogenase reductase family protein
LIMDEABD_00527	1.76e-202	-	-	-	K	ko:K02529	-	ko00000,ko03000	Psort location Cytoplasmic, score
LIMDEABD_00528	3.14e-91	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
LIMDEABD_00529	7.32e-110	nagC	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Psort location Cytoplasmic, score
LIMDEABD_00530	0.0	-	-	-	H	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00531	1.79e-233	-	-	-	P	ko:K21572	-	ko00000,ko02000	non supervised orthologous group
LIMDEABD_00533	2.21e-58	-	-	-	C	-	-	-	Domain of unknown function (DUF4855)
LIMDEABD_00535	1.23e-198	-	-	-	G	-	-	-	Phosphodiester glycosidase
LIMDEABD_00536	2.01e-71	-	-	-	C	-	-	-	Domain of unknown function (DUF4855)
LIMDEABD_00538	2.77e-35	-	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	Glycerophosphoryl diester phosphodiesterase family
LIMDEABD_00539	8.42e-303	-	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Beta galactosidase small chain
LIMDEABD_00540	6.21e-176	susB	3.2.1.20, 3.2.1.3	GH31,GH97	G	ko:K01187,ko:K21574	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	alpha-glucosidase
LIMDEABD_00541	6.77e-172	susB	3.2.1.20, 3.2.1.3	GH31,GH97	G	ko:K01187,ko:K21574	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	alpha-glucosidase
LIMDEABD_00542	4.55e-191	-	3.2.1.52	GH20	G	ko:K12373	ko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142	ko00000,ko00001,ko00002,ko01000,ko03110	Glycosyl hydrolase family 20, catalytic domain
LIMDEABD_00543	1.32e-212	-	-	-	S	-	-	-	Domain of unknown function (DUF5109)
LIMDEABD_00544	5.33e-272	araE	-	-	P	ko:K02100	-	ko00000,ko02000	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
LIMDEABD_00545	2.26e-259	ce	5.1.3.8	-	G	ko:K01787	ko00520,map00520	ko00000,ko00001,ko01000	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
LIMDEABD_00546	2.79e-91	-	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase family
LIMDEABD_00547	1.13e-80	-	-	-	-	-	-	-	-
LIMDEABD_00548	1.81e-113	-	-	-	U	-	-	-	Relaxase/Mobilisation nuclease domain
LIMDEABD_00549	3.5e-68	-	-	-	U	-	-	-	Relaxase/Mobilisation nuclease domain
LIMDEABD_00550	6.74e-22	-	-	-	S	-	-	-	COG NOG37914 non supervised orthologous group
LIMDEABD_00551	1.6e-45	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_00553	3.46e-126	-	-	-	K	-	-	-	Transcriptional regulator
LIMDEABD_00554	1.93e-138	ribE	2.5.1.9	-	H	ko:K00793	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Lumazine binding domain
LIMDEABD_00555	1.66e-228	phoR	2.7.13.3	-	T	ko:K07636	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	ATPase histidine kinase DNA gyrase B HSP90 domain protein
LIMDEABD_00556	1.68e-194	lgt	-	-	M	-	-	-	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LIMDEABD_00557	1.05e-129	-	-	-	-	-	-	-	-
LIMDEABD_00558	4.99e-96	-	-	-	S	-	-	-	GtrA-like protein
LIMDEABD_00559	0.0	uvrB	-	-	L	ko:K03702	ko03420,map03420	ko00000,ko00001,ko03400	damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage
LIMDEABD_00560	3.56e-19	-	-	-	H	-	-	-	Methyltransferase domain
LIMDEABD_00561	4.06e-40	-	-	-	H	-	-	-	Methyltransferase domain protein
LIMDEABD_00562	0.0	dnaG	-	-	L	ko:K02316	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
LIMDEABD_00563	2.5e-101	smpB	-	-	O	ko:K03664	-	ko00000	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA
LIMDEABD_00564	4.47e-160	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_00565	3.84e-145	yeaZ	-	-	O	ko:K14742	-	ko00000,ko03016	Glycoprotease family
LIMDEABD_00566	2.83e-88	-	-	-	-	-	-	-	-
LIMDEABD_00567	0.0	-	3.2.1.177	GH31	G	ko:K01811	-	ko00000,ko01000	Belongs to the glycosyl hydrolase 31 family
LIMDEABD_00568	3.01e-219	rmuC	-	-	S	ko:K09760	-	ko00000	RmuC family
LIMDEABD_00569	4.43e-126	rpe	5.1.3.1	-	G	ko:K01783	ko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ribulose-phosphate 3-epimerase family
LIMDEABD_00570	1.35e-114	-	-	-	S	ko:K07023	-	ko00000	HD domain
LIMDEABD_00571	0.0	yheS_3	-	-	S	ko:K06158	-	ko00000,ko03012	ABC transporter
LIMDEABD_00572	6.71e-158	trmH	2.1.1.185	-	J	ko:K03218,ko:K03437	-	ko00000,ko01000,ko03009,ko03016	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIMDEABD_00573	0.0	-	-	-	I	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00574	6.88e-115	-	-	-	S	ko:K07043	-	ko00000	Metal-dependent hydrolase
LIMDEABD_00575	2.8e-146	glpT	-	-	G	ko:K02445	-	ko00000,ko02000	COG2271 Sugar phosphate permease
LIMDEABD_00576	0.0	glpA	1.1.5.3	-	C	ko:K00111	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	C-terminal domain of alpha-glycerophosphate oxidase
LIMDEABD_00577	8.61e-168	agaR	-	-	K	ko:K02081	-	ko00000,ko03000	Transcriptional regulator, DeoR family
LIMDEABD_00579	7.08e-158	-	3.1.4.46	-	C	ko:K01126	ko00564,map00564	ko00000,ko00001,ko01000	glycerophosphoryl diester phosphodiesterase
LIMDEABD_00580	1.42e-270	galK	2.7.1.6	-	G	ko:K00849	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LIMDEABD_00583	8.02e-111	speG	2.3.1.57	-	J	ko:K00657	ko00330,ko01100,ko04216,map00330,map01100,map04216	ko00000,ko00001,ko00002,ko01000	Acetyltransferase (GNAT) domain
LIMDEABD_00584	7.37e-292	-	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Winged helix-turn-helix DNA-binding
LIMDEABD_00585	4.99e-195	fabD	2.3.1.39	-	I	ko:K00645	ko00061,ko00333,ko01100,ko01130,ko01212,map00061,map00333,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	malonyl CoA-acyl carrier protein transacylase
LIMDEABD_00586	3.95e-98	-	-	-	S	-	-	-	Domain of unknown function (DUF4465)
LIMDEABD_00587	6.58e-164	-	-	-	K	ko:K02529	-	ko00000,ko03000	helix_turn _helix lactose operon repressor
LIMDEABD_00588	8.33e-185	nagB	3.5.99.6	-	G	ko:K02564	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion
LIMDEABD_00589	0.0	nagB	3.5.99.6	-	G	ko:K02564	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	GlcNAc-PI de-N-acetylase
LIMDEABD_00590	1.94e-137	-	-	-	T	-	-	-	Carbohydrate-binding family 9
LIMDEABD_00591	2e-232	mdsC	-	-	S	-	-	-	Phosphotransferase enzyme family
LIMDEABD_00593	1.75e-40	-	-	-	S	-	-	-	Domain of unknown function (DUF5017)
LIMDEABD_00594	6.49e-61	-	-	-	GM	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_00595	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00596	0.0	-	4.2.2.20, 4.2.2.21	-	M	ko:K08961	-	ko00000,ko01000	Chondroitin sulfate ABC lyase
LIMDEABD_00597	2.94e-157	-	-	-	O	-	-	-	Glycosyl Hydrolase Family 88
LIMDEABD_00598	0.0	chonabc	4.2.2.20, 4.2.2.21	-	N	ko:K08961	-	ko00000,ko01000	Chondroitin sulfate ABC lyase
LIMDEABD_00599	1.11e-222	aslA	-	-	P	-	-	-	Arylsulfatase
LIMDEABD_00600	1.9e-210	-	-	-	M	-	-	-	Domain of unknown function (DUF4955)
LIMDEABD_00601	3.98e-09	-	-	-	S	-	-	-	COG NOG38840 non supervised orthologous group
LIMDEABD_00602	1.96e-206	manA	5.3.1.8	-	G	ko:K01809	ko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	mannose-6-phosphate isomerase, class I
LIMDEABD_00603	1.4e-241	-	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	ROK family
LIMDEABD_00604	1.31e-245	ilvC	1.1.1.86	-	EH	ko:K00053	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Acetohydroxy acid isomeroreductase, catalytic domain
LIMDEABD_00605	3.16e-105	ilvN	2.2.1.6	-	E	ko:K01653	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	synthase small subunit
LIMDEABD_00606	0.0	ilvB	2.2.1.6	-	E	ko:K01652	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Thiamine pyrophosphate enzyme, central domain
LIMDEABD_00607	0.0	ilvD	4.2.1.9	-	E	ko:K01687	ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Dehydratase family
LIMDEABD_00608	7.24e-182	thrB	2.7.1.39	-	E	ko:K00872	ko00260,ko01100,ko01110,ko01120,ko01230,map00260,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate
LIMDEABD_00609	1.29e-282	thrC	4.2.3.1	-	E	ko:K01733	ko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Threonine synthase
LIMDEABD_00610	7.06e-240	-	-	-	-	-	-	-	-
LIMDEABD_00612	5.74e-226	dinB	2.7.7.7	-	L	ko:K02346	-	ko00000,ko01000,ko03400	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LIMDEABD_00613	2.04e-113	-	-	-	C	-	-	-	nitroreductase
LIMDEABD_00614	4.65e-150	cutC	-	-	P	ko:K06201	-	ko00000	Participates in the control of copper homeostasis
LIMDEABD_00615	0.0	-	-	-	E	-	-	-	Transglutaminase-like superfamily
LIMDEABD_00616	0.0	-	3.2.1.51	GH29	G	ko:K01206	ko00511,map00511	ko00000,ko00001,ko01000,ko04147	Alpha-L-fucosidase
LIMDEABD_00617	2.92e-72	-	-	-	O	-	-	-	Peptidase, S8 S53 family
LIMDEABD_00619	2.63e-55	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_00621	4.21e-273	-	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
LIMDEABD_00622	2.38e-96	-	-	-	V	-	-	-	Type I restriction enzyme R protein N terminus (HSDR_N)
LIMDEABD_00623	4.2e-159	-	-	-	KT	-	-	-	LytTr DNA-binding domain
LIMDEABD_00624	1.09e-218	-	-	-	T	-	-	-	Histidine kinase
LIMDEABD_00625	0.0	-	6.2.1.3	-	I	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	AMP-binding enzyme
LIMDEABD_00626	5.97e-134	plsY	2.3.1.15	-	I	ko:K08591	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP
LIMDEABD_00627	1.39e-219	-	-	-	S	-	-	-	Uncharacterized protein conserved in bacteria (DUF2179)
LIMDEABD_00628	2.19e-295	miaB	2.8.4.3	-	H	ko:K06168	-	ko00000,ko01000,ko03016	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LIMDEABD_00629	1.42e-268	-	-	-	L	-	-	-	Belongs to the DEAD box helicase family
LIMDEABD_00630	0.0	katA	1.11.1.6	-	C	ko:K03781	ko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014	ko00000,ko00001,ko00002,ko01000	Belongs to the catalase family
LIMDEABD_00632	1.04e-306	der	-	-	S	ko:K03977	-	ko00000,ko03009	GTPase that plays an essential role in the late steps of ribosome biogenesis
LIMDEABD_00633	0.0	ybaL_1	-	-	PT	-	-	-	Transporter, CPA2 family
LIMDEABD_00634	3.65e-224	-	-	-	G	-	-	-	Transporter, major facilitator family protein
LIMDEABD_00635	6.02e-120	-	-	-	M	-	-	-	Outer membrane protein beta-barrel domain
LIMDEABD_00636	4.75e-195	phoH	-	-	T	ko:K06217	-	ko00000	Phosphate starvation-inducible protein PhoH
LIMDEABD_00637	3.28e-313	pepD_2	-	-	E	ko:K01270	ko00480,ko01100,map00480,map01100	ko00000,ko00001,ko01000,ko01002	Peptidase family M20/M25/M40
LIMDEABD_00638	2.11e-222	-	-	-	I	-	-	-	lipid kinase, YegS Rv2252 BmrU family
LIMDEABD_00639	0.0	-	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Beta galactosidase small chain
LIMDEABD_00640	0.0	eam	5.4.3.2	-	E	ko:K01843	ko00310,map00310	ko00000,ko00001,ko01000	KamA family
LIMDEABD_00641	4.7e-152	-	-	-	S	ko:K06911	-	ko00000	Belongs to the pirin family
LIMDEABD_00642	0.0	prfC	-	-	J	ko:K02837	-	ko00000,ko03012	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LIMDEABD_00643	0.0	nadB	1.4.3.16	-	H	ko:K00278	ko00250,ko00760,ko01100,map00250,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of L-aspartate to iminoaspartate
LIMDEABD_00644	8.61e-271	queA	2.4.99.17	-	H	ko:K07568	-	ko00000,ko01000,ko03016	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LIMDEABD_00645	3.34e-112	-	-	-	M	-	-	-	Outer membrane protein beta-barrel domain
LIMDEABD_00646	9.7e-94	-	-	-	M	-	-	-	Outer membrane protein beta-barrel domain
LIMDEABD_00647	6.87e-246	-	-	-	P	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00648	1.78e-302	eno	4.2.1.11	-	G	ko:K01689	ko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066	ko00000,ko00001,ko00002,ko01000,ko03019,ko04147	Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis
LIMDEABD_00650	1.02e-47	groS	-	-	O	ko:K04078	-	ko00000,ko03029,ko03110	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
LIMDEABD_00651	0.0	groL	-	-	O	ko:K04077	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
LIMDEABD_00652	1.14e-201	-	-	-	EG	-	-	-	EamA-like transporter family
LIMDEABD_00653	2.95e-127	-	-	-	S	-	-	-	COG NOG23385 non supervised orthologous group
LIMDEABD_00654	0.0	recN	-	-	L	ko:K03631	-	ko00000,ko03400	May be involved in recombinational repair of damaged DNA
LIMDEABD_00655	9.6e-257	coaBC	4.1.1.36, 6.3.2.5	-	H	ko:K13038	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIMDEABD_00656	6.59e-65	rpoZ	-	-	K	-	-	-	RNA polymerase Rpb6
LIMDEABD_00657	3.61e-164	yfiO	-	-	S	ko:K05807	-	ko00000,ko02000	outer membrane assembly lipoprotein YfiO
LIMDEABD_00659	5.08e-276	-	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIMDEABD_00660	8.9e-95	greA	-	-	K	ko:K03624	-	ko00000,ko03021	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
LIMDEABD_00662	0.0	-	-	-	P	ko:K16089	-	ko00000,ko02000	Outer membrane receptor for ferrienterochelin and colicins
LIMDEABD_00663	1.2e-212	mdh	1.1.1.37	-	C	ko:K00024	ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible oxidation of malate to oxaloacetate
LIMDEABD_00664	5.73e-82	gcvH	-	-	E	ko:K02437	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	ko00000,ko00001,ko00002	The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein
LIMDEABD_00666	1.1e-133	birA	6.3.4.15	-	H	ko:K03524	ko00780,ko01100,map00780,map01100	ko00000,ko00001,ko01000,ko03000	Biotin/lipoate A/B protein ligase family
LIMDEABD_00667	1.27e-156	dapD	2.3.1.117	-	E	ko:K00674	ko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the transferase hexapeptide repeat family
LIMDEABD_00668	0.0	pep	3.4.21.26	-	E	ko:K01322	ko04614,map04614	ko00000,ko00001,ko01000,ko01002	Peptidase, S9A B C family, catalytic domain protein
LIMDEABD_00669	9.56e-286	lysC	2.7.2.4	-	E	ko:K00928	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the aspartokinase family
LIMDEABD_00670	5.25e-240	-	-	-	P	-	-	-	Protein of unknown function (DUF4435)
LIMDEABD_00671	3.59e-69	-	-	-	J	ko:K03113	ko03013,map03013	ko00000,ko00001,ko03012	Translation initiation factor SUI1
LIMDEABD_00672	0.0	-	-	-	U	-	-	-	Involved in the tonB-independent uptake of proteins
LIMDEABD_00673	0.0	mrcA	2.4.1.129, 3.4.16.4	GT51	M	ko:K05366	ko00550,ko01100,ko01501,map00550,map01100,map01501	ko00000,ko00001,ko01000,ko01003,ko01011	Transglycosylase
LIMDEABD_00674	4.03e-12	-	-	-	S	-	-	-	regulation of response to stimulus
LIMDEABD_00675	5.98e-110	-	-	-	S	-	-	-	Putative zinc-binding metallo-peptidase
LIMDEABD_00676	7.28e-133	-	-	-	G	ko:K21572	-	ko00000,ko02000	Starch-binding associating with outer membrane
LIMDEABD_00677	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00678	1.42e-195	-	-	-	T	-	-	-	Response regulator receiver domain protein
LIMDEABD_00679	4.67e-214	asd	1.2.1.11	-	E	ko:K00133	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LIMDEABD_00680	2.05e-194	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_00681	3.62e-307	-	3.1.1.53	-	S	ko:K05970	-	ko00000,ko01000	Carbohydrate esterase, sialic acid-specific acetylesterase
LIMDEABD_00682	1.45e-314	tnaA	4.1.99.1	-	E	ko:K01667	ko00380,map00380	ko00000,ko00001,ko01000	Beta-eliminating lyase
LIMDEABD_00683	1.08e-24	rubR	-	-	C	-	-	-	rubredoxin
LIMDEABD_00684	3.92e-116	-	1.15.1.1	-	C	ko:K04564	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016	ko00000,ko00001,ko01000	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LIMDEABD_00686	6.67e-70	nuoA	1.6.5.3	-	C	ko:K00330	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIMDEABD_00687	3.28e-135	nuoB	1.6.5.3	-	C	ko:K00331	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIMDEABD_00688	0.0	nuoC	1.6.5.3	-	C	ko:K00333,ko:K13378	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIMDEABD_00690	1.27e-248	nuoH	1.6.5.3	-	C	ko:K00337	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LIMDEABD_00691	8.7e-78	nuoI	1.6.5.3	-	C	ko:K00338	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIMDEABD_00692	2.3e-100	ndhG	1.6.5.3	-	C	ko:K00339	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the complex I subunit 6 family
LIMDEABD_00693	2.21e-57	nuoK	1.6.5.3	-	C	ko:K00340	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIMDEABD_00694	0.0	nuoL	1.6.5.3	-	CP	ko:K00341	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	Proton-translocating NADH-quinone oxidoreductase, chain L
LIMDEABD_00695	0.0	nuoM	1.6.5.3	-	C	ko:K00342	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	proton-translocating NADH-quinone oxidoreductase, chain M
LIMDEABD_00696	1.19e-280	nuoN	1.6.5.3	-	C	ko:K00343	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002,ko01000	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIMDEABD_00697	1.02e-81	ogt	2.1.1.63	-	L	ko:K00567,ko:K10778	-	ko00000,ko01000,ko03000,ko03400	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LIMDEABD_00698	0.0	dpp	3.4.14.5	-	EU	ko:K01278	ko04974,map04974	ko00000,ko00001,ko01000,ko01002,ko04090,ko04147	Dipeptidyl peptidase IV (DPP IV) N-terminal region
LIMDEABD_00699	1.15e-138	-	-	-	-	-	-	-	-
LIMDEABD_00700	2.62e-204	lytG	-	-	MNU	-	-	-	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
LIMDEABD_00701	5.72e-137	-	-	-	M	-	-	-	Protein of unknown function (DUF4254)
LIMDEABD_00702	1.19e-194	-	-	GT9	M	ko:K02843	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	heptosyltransferase
LIMDEABD_00703	3.23e-75	-	-	-	G	-	-	-	Domain of unknown function (DUF4886)
LIMDEABD_00704	3.96e-30	-	-	-	K	ko:K03088	-	ko00000,ko03021	RNA polymerase sigma-70 factor
LIMDEABD_00705	9.6e-27	-	-	-	PT	-	-	-	Domain of unknown function (DUF4974)
LIMDEABD_00706	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00707	1.26e-162	-	-	-	S	ko:K21572	-	ko00000,ko02000	Pfam:SusD
LIMDEABD_00708	4.01e-57	-	-	-	G	-	-	-	Phosphodiester glycosidase
LIMDEABD_00709	4.14e-50	-	-	-	U	-	-	-	Parallel beta-helix repeats
LIMDEABD_00710	2.31e-103	-	-	-	G	-	-	-	Xylose isomerase-like TIM barrel
LIMDEABD_00711	5.96e-152	-	-	-	G	-	-	-	Phosphodiester glycosidase
LIMDEABD_00712	1.76e-98	-	-	-	S	-	-	-	Lipocalin-like
LIMDEABD_00713	4.36e-314	gltA	1.3.1.1, 1.4.1.13, 1.4.1.14	-	C	ko:K00266,ko:K17722	ko00240,ko00250,ko00410,ko00770,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00240,map00250,map00410,map00770,map00910,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
LIMDEABD_00714	5.04e-200	gltD	1.18.1.2, 1.19.1.1	-	C	ko:K00528	-	ko00000,ko01000	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
LIMDEABD_00715	5.39e-200	-	-	-	S	-	-	-	Protein of unknown function (DUF1573)
LIMDEABD_00717	4.55e-92	-	-	-	S	-	-	-	Domain of unknown function (DUF4493)
LIMDEABD_00718	4.32e-177	-	-	-	S	-	-	-	Domain of unknown function (DUF4493)
LIMDEABD_00719	1.8e-217	-	-	-	S	-	-	-	Domain of unknown function (DUF4493)
LIMDEABD_00720	9.72e-165	-	-	-	NU	-	-	-	Tfp pilus assembly protein FimV
LIMDEABD_00721	4.06e-151	-	-	-	NU	-	-	-	Psort location
LIMDEABD_00722	0.0	-	-	-	S	-	-	-	Putative carbohydrate metabolism domain
LIMDEABD_00723	5.04e-62	-	-	-	PT	-	-	-	Sigma factor regulatory protein, FecR PupR family
LIMDEABD_00724	0.0	-	-	-	P	-	-	-	PFAM TonB-dependent Receptor Plug
LIMDEABD_00725	4.71e-214	-	-	-	P	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_00726	7.74e-05	-	-	-	S	-	-	-	Concanavalin A-like lectin/glucanases superfamily
LIMDEABD_00727	2.19e-07	-	-	-	L	-	-	-	Endonuclease Exonuclease phosphatase
LIMDEABD_00728	8.04e-198	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
LIMDEABD_00729	0.000142	-	-	-	K	ko:K03088	-	ko00000,ko03021	Sigma-70, region 4
LIMDEABD_00730	3.82e-138	mltF	-	-	M	ko:K18691	-	ko00000,ko01000,ko01011	Transglycosylase SLT domain
LIMDEABD_00731	0.0	-	-	-	H	-	-	-	Putative porin
LIMDEABD_00732	4.63e-132	pssA	2.7.8.8	-	I	ko:K17103	ko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LIMDEABD_00733	1.39e-247	manC	2.7.7.13	-	M	ko:K00971	ko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Nucleotidyl transferase
LIMDEABD_00734	1.46e-227	murF	6.3.2.10	-	M	ko:K01929	ko00300,ko00550,ko01100,ko01502,map00300,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein
LIMDEABD_00735	2.81e-210	-	-	-	G	-	-	-	Domain of unknown function (DUF4091)
LIMDEABD_00736	2.93e-67	-	-	-	S	-	-	-	MazG nucleotide pyrophosphohydrolase domain
LIMDEABD_00737	0.0	-	-	-	S	-	-	-	OPT oligopeptide transporter protein
LIMDEABD_00738	1.85e-283	pepT	3.4.11.4	-	E	ko:K01258	-	ko00000,ko01000,ko01002	Cleaves the N-terminal amino acid of tripeptides
LIMDEABD_00739	0.0	nadE	6.3.5.1	-	H	ko:K01950	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIMDEABD_00740	1.65e-82	-	-	-	S	-	-	-	COG NOG28221 non supervised orthologous group
LIMDEABD_00741	0.0	gdhA	1.4.1.4	-	E	ko:K00262	ko00220,ko00250,ko00910,ko01100,map00220,map00250,map00910,map01100	ko00000,ko00001,ko01000	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
LIMDEABD_00742	7.96e-124	-	-	-	I	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00743	2.37e-307	rpoN	-	-	K	ko:K03092	ko02020,ko05111,map02020,map05111	ko00000,ko00001,ko03021	RNA polymerase sigma54 factor
LIMDEABD_00744	0.0	asnS	6.1.1.22	-	J	ko:K01893	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	tRNA synthetases class II (D, K and N)
LIMDEABD_00745	3.81e-308	-	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
LIMDEABD_00746	9.32e-162	-	-	-	S	-	-	-	S1 P1 nuclease
LIMDEABD_00747	4.98e-96	rlmH	2.1.1.177	-	J	ko:K00783	-	ko00000,ko01000,ko03009	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LIMDEABD_00748	2.6e-101	-	-	-	K	-	-	-	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
LIMDEABD_00749	0.0	-	-	-	P	-	-	-	TonB dependent receptor
LIMDEABD_00751	2.6e-197	nadC	2.4.2.19	-	H	ko:K00767	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NadC ModD family
LIMDEABD_00752	0.0	-	-	-	M	-	-	-	Sulfatase
LIMDEABD_00753	6.03e-306	-	-	-	S	ko:K01163	-	ko00000	Psort location Cytoplasmic, score 8.96
LIMDEABD_00755	2.39e-245	-	-	-	S	-	-	-	C terminal of Calcineurin-like phosphoesterase
LIMDEABD_00756	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_00757	1.04e-297	-	-	-	S	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_00759	3.94e-182	folD	1.5.1.5, 3.5.4.9	-	E	ko:K01491	ko00670,ko00720,ko01100,ko01120,ko01200,map00670,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LIMDEABD_00760	6.29e-287	purD	6.3.4.13	-	F	ko:K01945	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Belongs to the GARS family
LIMDEABD_00761	0.0	purH	2.1.2.3, 3.5.4.10	-	F	ko:K00602	ko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523	ko00000,ko00001,ko00002,ko01000,ko04147	Bifunctional purine biosynthesis protein PurH
LIMDEABD_00762	1.04e-118	purN	2.1.2.2	-	F	ko:K11175	ko00230,ko00670,ko01100,ko01110,ko01130,map00230,map00670,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LIMDEABD_00763	9.76e-233	purM	6.3.3.1	-	F	ko:K01933	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoribosylformylglycinamidine cyclo-ligase
LIMDEABD_00764	0.0	purF	2.4.2.14	-	F	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01002	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LIMDEABD_00765	2.77e-160	purC	6.3.2.6	-	F	ko:K01923	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoribosylaminoimidazolesuccinocarboxamide synthase
LIMDEABD_00766	3.97e-182	-	-	-	S	-	-	-	Endonuclease/Exonuclease/phosphatase family
LIMDEABD_00767	0.0	purL	6.3.5.3	-	F	ko:K01952	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	phosphoribosylformylglycinamidine synthase
LIMDEABD_00768	2.5e-239	purK	6.3.4.18	-	F	ko:K01589	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LIMDEABD_00769	8.85e-90	purE	5.4.99.18	-	F	ko:K01588	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LIMDEABD_00770	0.0	-	-	-	G	-	-	-	Alpha-1,2-mannosidase
LIMDEABD_00771	3.6e-245	pyrB	2.1.3.2	-	F	ko:K00609	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the ATCase OTCase family
LIMDEABD_00772	1.33e-137	pyrE	2.4.2.10, 4.1.1.23	-	F	ko:K00762,ko:K13421	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LIMDEABD_00773	4.2e-190	-	-	-	M	-	-	-	Peptidase family S41
LIMDEABD_00774	6.46e-54	-	-	-	CO	-	-	-	Glutaredoxin
LIMDEABD_00775	1.31e-154	pyrF	4.1.1.23	-	F	ko:K01591	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
LIMDEABD_00776	1.2e-209	pyrD	1.3.1.14, 1.3.98.1	-	F	ko:K00226,ko:K17828	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily
LIMDEABD_00777	5.81e-166	pyrK	-	-	C	ko:K02823	ko00240,ko01100,map00240,map01100	ko00000,ko00001	Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( )
LIMDEABD_00778	0.0	carB	6.3.5.5	-	EF	ko:K01955	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the CarB family
LIMDEABD_00779	4.47e-256	carA	6.3.5.5	-	F	ko:K01956	ko00240,ko00250,ko01100,map00240,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the CarA family
LIMDEABD_00780	5.37e-274	pyrC	3.5.2.3	-	F	ko:K01465	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily
LIMDEABD_00781	9.93e-168	-	-	-	K	ko:K02081	-	ko00000,ko03000	DeoR C terminal sensor domain
LIMDEABD_00782	0.0	-	-	-	G	ko:K07783	ko02020,map02020	ko00000,ko00001,ko02000	Major Facilitator Superfamily
LIMDEABD_00783	5.53e-284	-	1.1.1.261	-	C	ko:K00096	ko00564,map00564	ko00000,ko00001,ko01000	Iron-containing alcohol dehydrogenase
LIMDEABD_00784	1.98e-234	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
LIMDEABD_00785	7.68e-192	-	-	-	G	ko:K02566	-	ko00000	Haloacid dehalogenase-like hydrolase
LIMDEABD_00789	5.62e-88	wecD	-	-	M	-	-	-	Acetyltransferase (GNAT) family
LIMDEABD_00790	4.67e-77	hsp20	-	-	O	ko:K13993	ko04141,map04141	ko00000,ko00001,ko03110	Belongs to the small heat shock protein (HSP20) family
LIMDEABD_00791	1.55e-73	-	-	-	K	ko:K03827	-	ko00000,ko01000	Acetyltransferase, gnat family
LIMDEABD_00792	2.1e-149	-	-	-	C	-	-	-	4Fe-4S dicluster domain
LIMDEABD_00793	0.000116	uvrD2	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	HRDC domain
LIMDEABD_00794	4.23e-128	-	-	-	C	-	-	-	Nitroreductase family
LIMDEABD_00795	6.04e-117	-	3.6.1.13	-	L	ko:K01515	ko00230,map00230	ko00000,ko00001,ko01000	Hydrolase, NUDIX family
LIMDEABD_00796	1.6e-252	-	-	-	S	-	-	-	Belongs to the UPF0597 family
LIMDEABD_00797	7.52e-235	-	-	-	G	-	-	-	Histidine acid phosphatase
LIMDEABD_00798	5.01e-203	-	-	-	S	-	-	-	COG NOG28036 non supervised orthologous group
LIMDEABD_00799	4.51e-281	waaA	2.4.99.12, 2.4.99.13, 2.4.99.14, 2.4.99.15	GT30	M	ko:K02527	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
LIMDEABD_00800	4.58e-68	-	-	-	L	ko:K07460	-	ko00000	Belongs to the UPF0102 family
LIMDEABD_00801	8.19e-183	tyrA	1.3.1.12	-	E	ko:K04517	ko00400,ko00401,ko01100,ko01110,ko01130,ko01230,map00400,map00401,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Prephenate dehydrogenase
LIMDEABD_00802	2.68e-160	pepE	3.4.13.21	-	E	ko:K05995	-	ko00000,ko01000,ko01002	Belongs to the peptidase S51 family
LIMDEABD_00803	8.7e-44	acpP	-	-	IQ	ko:K02078	-	ko00000,ko00001	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIMDEABD_00804	1.82e-295	fabF	2.3.1.179	-	I	ko:K09458	ko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
LIMDEABD_00805	1.79e-133	rnc	3.1.26.3	-	J	ko:K03685	ko03008,ko05205,map03008,map05205	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
LIMDEABD_00806	5.83e-111	radC	-	-	E	ko:K03630	-	ko00000	Belongs to the UPF0758 family
LIMDEABD_00807	4.75e-24	-	-	-	S	-	-	-	Putative binding domain, N-terminal
LIMDEABD_00808	0.0	glyQS	6.1.1.14	-	J	ko:K01880	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of glycine to tRNA(Gly)
LIMDEABD_00809	2.53e-89	ruvX	-	-	L	ko:K07447	-	ko00000,ko01000	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LIMDEABD_00810	5.41e-123	def	3.5.1.88	-	J	ko:K01462	-	ko00000,ko01000	Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
LIMDEABD_00811	1.15e-58	-	-	-	S	-	-	-	TRL-like protein family
LIMDEABD_00812	2.94e-96	-	-	-	-	-	-	-	-
LIMDEABD_00813	1.43e-66	-	-	-	M	ko:K11934	-	ko00000,ko02000	Outer membrane protein beta-barrel domain
LIMDEABD_00814	0.0	ppdK	2.7.9.1	-	G	ko:K01006	ko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the PEP-utilizing enzyme family
LIMDEABD_00815	8.81e-148	-	-	-	-	-	-	-	-
LIMDEABD_00816	2.81e-16	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
LIMDEABD_00817	1.82e-236	-	-	-	E	-	-	-	N-terminus of Esterase_SGNH_hydro-type
LIMDEABD_00818	7.04e-257	mnmA	2.8.1.13	-	J	ko:K00566	ko04122,map04122	ko00000,ko00001,ko01000,ko03016	Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
LIMDEABD_00819	3.27e-96	rimM	-	-	J	ko:K02860	-	ko00000,ko03009	ribosome binding
LIMDEABD_00820	2.87e-88	rpsP	-	-	J	ko:K02959	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Belongs to the bacterial ribosomal protein bS16 family
LIMDEABD_00822	4.15e-76	divK	-	-	T	-	-	-	Response regulator receiver domain
LIMDEABD_00823	2.8e-308	-	-	-	M	-	-	-	Peptidase family M23
LIMDEABD_00824	4.02e-90	recX	-	-	S	ko:K03565	-	ko00000,ko03400	Modulates RecA activity
LIMDEABD_00825	1.58e-145	prmC	2.1.1.297	-	J	ko:K02493	-	ko00000,ko01000,ko03012	Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif
LIMDEABD_00826	8.89e-205	aroC	4.2.3.5	-	E	ko:K01736	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LIMDEABD_00827	1.05e-250	aroA	2.5.1.19	-	E	ko:K00800	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate
LIMDEABD_00828	6.74e-174	lptB	-	-	S	ko:K06861	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
LIMDEABD_00829	0.0	recQ	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
LIMDEABD_00833	8.38e-10	-	-	-	-	-	-	-	-
LIMDEABD_00834	6e-172	ksgA	2.1.1.182	-	J	ko:K02528	-	ko00000,ko01000,ko03009	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
LIMDEABD_00835	7.47e-246	-	-	-	S	-	-	-	Peptidase M16 inactive domain
LIMDEABD_00836	3.39e-262	-	-	-	S	ko:K07263	-	ko00000,ko01000,ko01002	Peptidase M16 inactive domain
LIMDEABD_00837	0.0	nifJ	1.2.7.1	-	C	ko:K03737	ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LIMDEABD_00838	3.45e-76	-	-	-	O	-	-	-	META domain
LIMDEABD_00839	5.27e-14	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
LIMDEABD_00840	1.35e-55	rpmA	-	-	J	ko:K02899	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL27 family
LIMDEABD_00841	3.38e-66	rplU	-	-	J	ko:K02888	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to 23S rRNA in the presence of protein L20
LIMDEABD_00842	3.06e-08	ompR	-	-	K	ko:K07659	ko02020,ko02026,map02020,map02026	ko00000,ko00001,ko00002,ko02022	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
LIMDEABD_00844	3.19e-123	ugcG	2.4.1.80	GT21	M	ko:K00720	ko00600,ko01100,map00600,map01100	ko00000,ko00001,ko00002,ko01000,ko01003,ko02000	transferase activity, transferring glycosyl groups
LIMDEABD_00845	4.45e-186	cysQ	3.1.3.7	-	P	ko:K01082	ko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130	ko00000,ko00001,ko01000,ko03016	Inositol monophosphatase family
LIMDEABD_00846	4.04e-12	-	-	-	-	-	-	-	-
LIMDEABD_00847	9.08e-298	trkA	-	-	P	ko:K03499	-	ko00000,ko02000	TrkA-N domain
LIMDEABD_00848	0.0	-	-	-	H	-	-	-	GH3 auxin-responsive promoter
LIMDEABD_00849	2.82e-141	dck	-	-	F	-	-	-	Deoxynucleoside kinase
LIMDEABD_00850	9.48e-285	rsmF	-	-	J	-	-	-	RNA-binding PUA-like domain of methyltransferase RsmF
LIMDEABD_00851	3.25e-79	ycgE	-	-	K	-	-	-	helix_turn_helix, mercury resistance
LIMDEABD_00852	5.41e-163	yqfO	-	-	S	-	-	-	Dinuclear metal center protein
LIMDEABD_00853	4.4e-130	-	-	-	S	ko:K07164	-	ko00000	Zinc ribbon domain
LIMDEABD_00854	0.0	nadE	6.3.5.1	-	H	ko:K01950	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the NAD synthetase family
LIMDEABD_00855	3.59e-69	-	-	-	T	ko:K03803	-	ko00000,ko03021	Positive regulator of sigma(E), RseC MucC
LIMDEABD_00856	2.15e-197	rnfB	-	-	C	ko:K03616	-	ko00000	electron transport complex, RnfABCDGE type, B subunit
LIMDEABD_00857	7.48e-283	rnfC	-	-	C	ko:K03615	-	ko00000	Part of a membrane complex involved in electron transport
LIMDEABD_00858	3.57e-185	rnfD	-	-	C	ko:K03614	-	ko00000	Part of a membrane complex involved in electron transport
LIMDEABD_00859	1.77e-114	rnfG	-	-	C	ko:K03612	-	ko00000	Part of a membrane complex involved in electron transport
LIMDEABD_00860	3.66e-116	rnfE	-	-	C	ko:K03613	-	ko00000	Part of a membrane complex involved in electron transport
LIMDEABD_00861	8.08e-119	rnfA	-	-	C	ko:K03617	-	ko00000	Part of a membrane complex involved in electron transport
LIMDEABD_00864	1.77e-11	-	-	-	J	ko:K02945	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein S1
LIMDEABD_00865	2.81e-06	-	2.7.11.1	-	T	ko:K12132	-	ko00000,ko01000,ko01001	Ntpase (Nacht family)
LIMDEABD_00866	6.83e-68	-	-	-	K	ko:K03088	-	ko00000,ko03021	RNA polymerase sigma-70 factor
LIMDEABD_00867	8.64e-20	-	-	-	PT	-	-	-	Domain of unknown function (DUF4974)
LIMDEABD_00868	0.0	-	-	-	H	-	-	-	TonB-dependent Receptor Plug Domain
LIMDEABD_00870	2.69e-207	-	-	-	P	-	-	-	TonB dependent receptor
LIMDEABD_00871	6.74e-21	-	-	-	S	-	-	-	Protein of unknown function (DUF4876)
LIMDEABD_00873	7.88e-307	-	-	-	E	-	-	-	Peptidase S46
LIMDEABD_00874	5.33e-286	-	-	-	C	-	-	-	4Fe-4S binding domain
LIMDEABD_00875	1.01e-166	-	-	-	S	ko:K07263	-	ko00000,ko01000,ko01002	Belongs to the peptidase M16 family
LIMDEABD_00876	1.04e-306	-	3.2.1.20	GH31	M	ko:K01187	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	Glycosyl-hydrolase 97 C-terminal, oligomerisation
LIMDEABD_00877	0.0	-	-	-	P	-	-	-	Outer membrane protein beta-barrel family
LIMDEABD_00878	1.21e-307	atsB	-	-	C	ko:K06871	-	ko00000	Iron-sulfur cluster-binding domain
LIMDEABD_00879	6.55e-161	aldH	1.2.1.3	-	C	ko:K00128	ko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Aldehyde dehydrogenase family
LIMDEABD_00880	5.53e-223	batB	-	-	S	ko:K07114	-	ko00000,ko02000	Von Willebrand factor type A domain
LIMDEABD_00881	3.84e-205	batA	-	-	S	ko:K07114	-	ko00000,ko02000	von Willebrand factor type A domain
LIMDEABD_00882	3.48e-36	-	-	-	S	-	-	-	23S rRNA-intervening sequence protein
LIMDEABD_00883	1.1e-67	batC	-	-	S	-	-	-	Tetratricopeptide repeat
LIMDEABD_00884	5.08e-201	-	-	-	O	-	-	-	Psort location CytoplasmicMembrane, score
LIMDEABD_00885	2.39e-198	-	-	-	S	-	-	-	Protein of unknown function DUF58
LIMDEABD_00886	2.88e-225	moxR	-	-	S	ko:K03924	-	ko00000,ko01000	ATPase family associated with various cellular activities (AAA)
LIMDEABD_00888	0.0	pcrA	3.6.4.12	-	L	ko:K03657	ko03420,ko03430,map03420,map03430	ko00000,ko00001,ko01000,ko03400	UvrD-like helicase C-terminal domain
LIMDEABD_00889	1.79e-217	-	-	-	M	-	-	-	Glycosyltransferase, group 2 family
LIMDEABD_00890	7.78e-158	nth	4.2.99.18	-	L	ko:K10773	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LIMDEABD_00891	5.17e-175	-	-	-	E	-	-	-	Pkd domain containing protein
LIMDEABD_00892	9.77e-234	nrnA	3.1.13.3, 3.1.3.7	-	S	ko:K06881	ko00920,ko01100,ko01120,map00920,map01100,map01120	ko00000,ko00001,ko01000,ko03400	DHH family
LIMDEABD_00893	2.67e-168	cysL	-	-	K	-	-	-	LysR substrate binding domain
LIMDEABD_00894	8.02e-221	-	-	-	S	-	-	-	Belongs to the UPF0324 family
LIMDEABD_00895	3.87e-117	-	-	-	K	-	-	-	Acetyltransferase (GNAT) domain
LIMDEABD_00896	1.81e-129	-	-	-	PT	-	-	-	Domain of unknown function (DUF4974)
LIMDEABD_00898	0.0	-	-	-	E	-	-	-	peptidase S46
LIMDEABD_00899	1.36e-91	maf	-	-	D	ko:K06287	-	ko00000	Maf-like protein
LIMDEABD_00900	2.51e-145	fahA	-	-	Q	-	-	-	FAH family
LIMDEABD_00901	2.06e-45	-	-	-	S	-	-	-	Domain of unknown function (DUF3784)
LIMDEABD_00902	6.35e-241	lpxB	2.4.1.182	GT19	M	ko:K00748	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01003,ko01005	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LIMDEABD_00903	2.31e-157	trmD	2.1.1.228	-	J	ko:K00554	-	ko00000,ko01000,ko03016	Belongs to the RNA methyltransferase TrmD family
LIMDEABD_00904	1.39e-151	-	-	-	O	-	-	-	Methyltransferase FkbM domain
LIMDEABD_00905	1.82e-155	-	-	-	P	-	-	-	Metallo-beta-lactamase superfamily
LIMDEABD_00906	2.27e-176	-	-	-	I	-	-	-	COG0657 Esterase lipase
LIMDEABD_00907	2.15e-222	-	-	-	-	-	-	-	-
LIMDEABD_00908	0.0	rumA	2.1.1.190	-	J	ko:K03215	-	ko00000,ko01000,ko03009	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LIMDEABD_00910	6.53e-20	-	-	-	M	-	-	-	Peptidase family M23
LIMDEABD_00911	1.04e-132	-	-	-	S	ko:K09807	-	ko00000	Protein of unknown function (DUF541)
LIMDEABD_00912	1.84e-95	cdd	3.5.4.5	-	F	ko:K01489	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	cytidine deaminase
LIMDEABD_00913	1.05e-162	rluC	5.4.99.23, 5.4.99.28, 5.4.99.29	-	J	ko:K06177,ko:K06180	-	ko00000,ko01000,ko03009,ko03016	Pseudouridine synthase, RluA family
LIMDEABD_00914	1.76e-88	dtd	-	-	J	ko:K07560	-	ko00000,ko01000,ko03016	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality
LIMDEABD_00915	1.27e-189	-	-	-	F	-	-	-	DNA/RNA non-specific endonuclease
LIMDEABD_00916	2.12e-206	-	-	-	S	ko:K07139	-	ko00000	Radical SAM protein
LIMDEABD_00917	1.01e-196	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
LIMDEABD_00918	0.0	priA	-	-	L	ko:K04066	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LIMDEABD_00919	2.5e-148	comF	2.4.2.14	-	S	ko:K00764	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01002	Phosphoribosyl transferase domain
LIMDEABD_00920	0.0	dnaB	3.6.4.12	-	L	ko:K02314	ko03030,ko04112,map03030,map04112	ko00000,ko00001,ko01000,ko03032	Participates in initiation and elongation during chromosome replication
LIMDEABD_00921	2.43e-316	comM	-	-	O	ko:K07391	-	ko00000	Magnesium chelatase, subunit ChlI C-terminal
LIMDEABD_00922	2.02e-249	murG	2.4.1.227	GT28	M	ko:K02563	ko00550,ko01100,ko01502,ko04112,map00550,map01100,map01502,map04112	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LIMDEABD_00923	1.22e-293	murC	6.3.2.8	-	M	ko:K01924	ko00471,ko00550,ko01100,map00471,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Belongs to the MurCDEF family
LIMDEABD_00924	2.02e-210	ftsQ	-	-	D	ko:K03589	ko04112,map04112	ko00000,ko00001,ko03036	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LIMDEABD_00925	1.91e-283	ftsA	-	-	D	ko:K03590	ko04112,map04112	ko00000,ko00001,ko03036,ko04812	Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring
LIMDEABD_00926	3.45e-271	ftsZ	-	-	D	ko:K03531	ko04112,map04112	ko00000,ko00001,ko02048,ko03036,ko04812	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LIMDEABD_00927	2.31e-267	gldE	-	-	S	-	-	-	Gliding motility-associated protein GldE
LIMDEABD_00928	8.32e-87	sfp	-	-	H	-	-	-	4'-phosphopantetheinyl transferase superfamily
LIMDEABD_00929	4.1e-308	-	-	-	M	-	-	-	non supervised orthologous group
LIMDEABD_00930	2.85e-11	-	-	-	S	-	-	-	Pentapeptide repeat protein
LIMDEABD_00931	3.75e-268	pepC	3.4.22.40	-	E	ko:K01372	-	ko00000,ko01000,ko01002	Peptidase C1-like family
LIMDEABD_00932	0.0	topA	5.99.1.2	-	L	ko:K03168	-	ko00000,ko01000,ko03032,ko03400	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LIMDEABD_00933	7.06e-268	-	-	-	S	-	-	-	Domain of unknown function (DUF4270)
LIMDEABD_00934	2.67e-182	glgA	2.4.1.21	GT5	G	ko:K00703	ko00500,ko01100,ko01110,ko02026,map00500,map01100,map01110,map02026	ko00000,ko00001,ko00002,ko01000,ko01003	Starch synthase catalytic domain
LIMDEABD_00935	1.45e-238	queA	2.4.99.17	-	H	ko:K07568	-	ko00000,ko01000,ko03016	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LIMDEABD_00936	9.49e-155	truB	5.4.99.25	-	J	ko:K03177	-	ko00000,ko01000,ko03016	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LIMDEABD_00937	3.54e-164	uppP	3.6.1.27	-	V	ko:K06153	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin
LIMDEABD_00938	7.96e-48	fjo13	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score 9.82
LIMDEABD_00939	1.39e-169	ftsX	-	-	D	ko:K09811	ko02010,map02010	ko00000,ko00001,ko00002,ko02000,ko03036	Belongs to the ABC-4 integral membrane protein family. FtsX subfamily
LIMDEABD_00940	0.0	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00941	1.18e-211	ispB	2.5.1.90	-	H	ko:K02523	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Belongs to the FPP GGPP synthase family
LIMDEABD_00942	1.47e-271	gluP	-	-	G	ko:K02429	-	ko00000,ko02000	Major Facilitator Superfamily
LIMDEABD_00944	5.09e-30	-	-	-	S	-	-	-	Phage prohead protease, HK97 family
LIMDEABD_00946	3.91e-112	-	-	-	-	-	-	-	-
LIMDEABD_00948	4.52e-47	dnaK	-	-	O	ko:K04043	ko03018,ko04212,ko05152,map03018,map04212,map05152	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147	Heat shock 70 kDa protein
LIMDEABD_00949	2.91e-61	sugE	-	-	P	ko:K11741	-	ko00000,ko02000	Multidrug resistance protein, SMR family
LIMDEABD_00950	6.87e-181	-	-	-	EG	-	-	-	EamA-like transporter family
LIMDEABD_00951	0.0	secD	-	-	U	ko:K03072,ko:K12257	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LIMDEABD_00952	7.53e-79	-	-	-	-	-	-	-	-
LIMDEABD_00953	3.39e-95	coaE	2.7.1.24	-	H	ko:K00859	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LIMDEABD_00954	7.18e-161	folP	2.5.1.15	-	H	ko:K00796	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Pterin binding enzyme
LIMDEABD_00955	3.39e-138	lolD	-	-	V	ko:K09810	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner
LIMDEABD_00956	2.65e-68	aprN	-	-	O	-	-	-	Belongs to the peptidase S8 family
LIMDEABD_00957	2.92e-163	-	-	-	L	-	-	-	Protein of unknown function (DUF2400)
LIMDEABD_00958	1.22e-130	smtA	2.1.1.223	-	J	ko:K15460	-	ko00000,ko01000,ko03016	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LIMDEABD_00959	6.51e-173	-	-	-	S	-	-	-	Domain of unknown function (DUF4831)
LIMDEABD_00960	6.05e-92	-	-	-	L	-	-	-	DNA alkylation repair enzyme
LIMDEABD_00961	5.21e-62	-	-	-	O	ko:K03671	ko04621,ko05418,map04621,map05418	ko00000,ko00001,ko03110	Thioredoxin
LIMDEABD_00962	6.72e-182	-	4.1.1.35, 5.1.3.2, 5.1.3.7	-	GM	ko:K01784,ko:K02473,ko:K08678	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	NAD dependent epimerase dehydratase family
LIMDEABD_00963	0.0	radA	-	-	O	ko:K04485	-	ko00000,ko03400	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LIMDEABD_00964	2.23e-52	-	-	-	M	-	-	-	energy transducer activity
LIMDEABD_00965	5e-121	-	-	-	C	-	-	-	LUD domain
LIMDEABD_00966	5.73e-253	rseP	-	-	M	ko:K11749	ko02024,ko04112,map02024,map04112	ko00000,ko00001,ko01000,ko01002	zinc metalloprotease
LIMDEABD_00967	6.69e-249	dxr	1.1.1.267	-	I	ko:K00099	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP)
LIMDEABD_00968	5.24e-181	-	-	-	D	-	-	-	Peptidase family M23
LIMDEABD_00969	4.56e-206	-	-	-	JM	-	-	-	Nucleotidyl transferase
LIMDEABD_00970	3.02e-79	-	-	-	S	-	-	-	phosphatase activity
LIMDEABD_00971	0.0	-	-	-	D	-	-	-	Chain length determinant protein
LIMDEABD_00972	1.82e-151	-	-	-	M	ko:K01991	ko02026,map02026	ko00000,ko00001,ko02000	Polysaccharide biosynthesis/export protein
LIMDEABD_00973	1.61e-113	pgmB	5.4.2.6	-	S	ko:K01838	ko00500,map00500	ko00000,ko00001,ko01000	HAD-hyrolase-like
LIMDEABD_00974	0.0	-	2.4.1.8	GH65	G	ko:K00691	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	Glycosyl hydrolase family 65, C-terminal domain
LIMDEABD_00975	1.84e-299	amyB	-	-	G	-	-	-	Alpha amylase, catalytic domain
LIMDEABD_00976	7.45e-163	-	-	-	S	ko:K06872	-	ko00000	COG1512 Beta-propeller domains of methanol dehydrogenase type
LIMDEABD_00977	2.5e-117	lemA	-	-	S	ko:K03744	-	ko00000	LemA family
LIMDEABD_00978	1.77e-190	-	-	-	EG	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_00979	0.0	-	-	-	P	-	-	-	Outer membrane protein beta-barrel family
LIMDEABD_00980	1.49e-144	plsC	2.3.1.51	-	I	ko:K00655	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family
LIMDEABD_00981	0.0	parE	-	-	L	ko:K02622	-	ko00000,ko01000,ko02048,ko03032,ko03036	Type IIA topoisomerase (DNA gyrase topo II, topoisomerase IV), B subunit
LIMDEABD_00982	0.0	parC	-	-	L	ko:K02621	-	ko00000,ko01000,ko02048,ko03032,ko03036	DNA Topoisomerase IV
LIMDEABD_00983	1.58e-90	aroK	2.7.1.71	-	F	ko:K00891	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LIMDEABD_00984	1.21e-147	murI	5.1.1.3	-	M	ko:K01776	ko00471,ko01100,map00471,map01100	ko00000,ko00001,ko01000,ko01011	Provides the (R)-glutamate required for cell wall biosynthesis
LIMDEABD_00985	0.0	ftsK	-	-	D	ko:K03466	-	ko00000,ko03036	Ftsk_gamma
LIMDEABD_00986	1e-98	lolA	-	-	M	ko:K03634	-	ko00000	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LIMDEABD_00987	5.93e-69	-	-	-	-	-	-	-	-
LIMDEABD_00988	0.0	gyrA	5.99.1.3	-	L	ko:K02469	-	ko00000,ko01000,ko03032,ko03400	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LIMDEABD_00989	5.16e-281	-	-	-	S	-	-	-	Tetratricopeptide repeat
LIMDEABD_00990	1.72e-225	-	2.7.1.45	-	G	ko:K00874	ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Kinase, PfkB family
LIMDEABD_00991	5.95e-239	-	3.1.1.11	-	G	ko:K01051	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko00002,ko01000	Domain of unknown function (DUF4861)
LIMDEABD_00992	0.0	uxaC	5.3.1.12	-	G	ko:K01812	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko00002,ko01000	glucuronate isomerase
LIMDEABD_00993	9.24e-237	-	2.7.1.45	-	G	ko:K00874	ko00030,ko01100,ko01120,ko01200,map00030,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Kinase, PfkB family
LIMDEABD_00994	2.43e-144	eda	4.1.2.14, 4.1.3.42	-	G	ko:K01625	ko00030,ko00630,ko01100,ko01120,ko01200,map00030,map00630,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	KDPG and KHG aldolase
LIMDEABD_00995	0.0	exuT	-	-	G	ko:K08191	-	ko00000,ko02000	Major Facilitator
LIMDEABD_00996	0.0	uxaB	1.1.1.17, 1.1.1.58	-	G	ko:K00009,ko:K00041	ko00040,ko00051,ko01100,map00040,map00051,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the mannitol dehydrogenase family. UxaB subfamily
LIMDEABD_00997	0.0	uxaA	4.2.1.42, 4.2.1.7	-	G	ko:K01685,ko:K01708	ko00040,ko00053,ko01100,map00040,map00053,map01100	ko00000,ko00001,ko00002,ko01000	SAF domain protein
LIMDEABD_00998	1.86e-138	-	3.1.1.11	-	G	ko:K01051	ko00040,ko01100,map00040,map01100	ko00000,ko00001,ko00002,ko01000	Pectinesterase
LIMDEABD_00999	8.4e-298	dinF	-	-	V	ko:K03327	-	ko00000,ko02000	MatE
LIMDEABD_01001	8.28e-214	rluB	5.4.99.22	-	J	ko:K06178	-	ko00000,ko01000,ko03009	Belongs to the pseudouridine synthase RsuA family
LIMDEABD_01002	2.94e-172	-	-	-	S	-	-	-	Clostripain family
LIMDEABD_01003	2.41e-153	-	-	-	S	-	-	-	Domain of unknown function (DUF4919)
LIMDEABD_01004	3.94e-187	dapA	4.3.3.7	-	E	ko:K01714	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LIMDEABD_01005	0.0	ligA	6.5.1.2	-	L	ko:K01972	ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430	ko00000,ko00001,ko01000,ko03032,ko03400	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LIMDEABD_01006	2.16e-50	-	-	-	-	-	-	-	-
LIMDEABD_01007	1.44e-45	-	-	-	S	-	-	-	Leucine rich repeat protein
LIMDEABD_01008	1.65e-306	purA	6.3.4.4	-	F	ko:K01939	ko00230,ko00250,ko01100,map00230,map00250,map01100	ko00000,ko00001,ko00002,ko01000	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LIMDEABD_01009	2.91e-187	etfB	-	-	C	ko:K03521	-	ko00000	Electron transfer flavoprotein
LIMDEABD_01010	2.29e-220	etfA	-	-	C	ko:K03522	-	ko00000,ko04147	Electron transfer flavoprotein
LIMDEABD_01012	0.0	acd	-	-	I	-	-	-	Acyl-CoA dehydrogenase, C-terminal domain
LIMDEABD_01013	1.79e-156	-	-	-	S	-	-	-	Glycosyltransferase WbsX
LIMDEABD_01014	8.72e-100	-	-	-	-	-	-	-	-
LIMDEABD_01015	4.22e-220	glsA	3.5.1.2	-	E	ko:K01425	ko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230	ko00000,ko00001,ko01000	Belongs to the glutaminase family
LIMDEABD_01016	0.0	gadC	-	-	E	ko:K20265	ko02024,map02024	ko00000,ko00001,ko02000	Amino acid permease
LIMDEABD_01017	1.4e-191	-	-	-	CO	-	-	-	Domain of unknown function (DUF5106)
LIMDEABD_01018	2.39e-132	rbr3A	-	-	C	-	-	-	Rubrerythrin
LIMDEABD_01019	3.83e-21	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_01020	4.65e-30	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_01021	5.53e-268	-	1.1.1.136, 1.1.1.336	-	M	ko:K02472,ko:K13015	ko00520,ko05111,map00520,map05111	ko00000,ko00001,ko01000,ko01005	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LIMDEABD_01022	3.25e-265	-	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	UDP-N-acetylglucosamine 2-epimerase
LIMDEABD_01023	3.69e-277	-	5.1.3.14	-	G	ko:K01791	ko00520,ko01100,ko05111,map00520,map01100,map05111	ko00000,ko00001,ko00002,ko01000,ko01005	UDP-N-acetylglucosamine 2-epimerase
LIMDEABD_01024	3.52e-203	-	1.1.1.367	-	GM	ko:K19068	-	ko00000,ko01000	NAD dependent epimerase dehydratase family
LIMDEABD_01026	4.84e-228	fnlA	5.1.3.2	-	M	ko:K17716	ko00052,ko00520,ko01100,map00052,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Polysaccharide biosynthesis protein
LIMDEABD_01027	9.95e-303	ugd	1.1.1.22	-	C	ko:K00012	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LIMDEABD_01028	1.49e-314	wbpM	-	-	GM	-	-	-	3-beta hydroxysteroid dehydrogenase/isomerase family
LIMDEABD_01029	1.34e-37	-	-	-	K	-	-	-	KOW (Kyprides, Ouzounis, Woese) motif.
LIMDEABD_01030	1.29e-39	-	-	-	L	-	-	-	COG NOG27661 non supervised orthologous group
LIMDEABD_01032	0.0	-	-	-	S	-	-	-	DNA-sulfur modification-associated
LIMDEABD_01033	2.11e-197	dam	2.1.1.72	-	H	ko:K06223	ko03430,map03430	ko00000,ko00001,ko01000,ko02048,ko03032,ko03400	D12 class N6 adenine-specific DNA methyltransferase
LIMDEABD_01034	3.45e-274	-	-	-	S	-	-	-	ATPase (AAA superfamily)
LIMDEABD_01035	1.46e-301	-	-	-	L	-	-	-	Arm DNA-binding domain
LIMDEABD_01037	2.21e-47	-	-	-	L	-	-	-	DNA binding domain, excisionase family
LIMDEABD_01039	1.1e-57	-	-	-	S	-	-	-	Primase C terminal 2 (PriCT-2)
LIMDEABD_01041	3.96e-134	-	-	-	N	-	-	-	Domain of unknown function
LIMDEABD_01044	1.69e-220	-	-	-	P	ko:K02016	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC-type Fe3 -hydroxamate transport system, periplasmic component
LIMDEABD_01046	5.07e-193	btuC	-	-	P	ko:K02015	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIMDEABD_01047	9.64e-152	-	3.6.3.34	-	HP	ko:K02013	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter
LIMDEABD_01049	6.37e-46	rpsT	-	-	J	ko:K02968	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 16S ribosomal RNA
LIMDEABD_01050	1.76e-117	adk	2.7.4.3	-	F	ko:K00939	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko04147	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism
LIMDEABD_01051	1.26e-225	thiL	2.7.4.16	-	H	ko:K00946	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LIMDEABD_01052	1.31e-114	-	-	-	-	-	-	-	-
LIMDEABD_01053	3.08e-74	rpsF	-	-	J	ko:K02990	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Binds together with S18 to 16S ribosomal RNA
LIMDEABD_01054	1.07e-57	rpsR	-	-	J	ko:K02963	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LIMDEABD_01055	2.08e-81	rplI	-	-	J	ko:K02939	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	binds to the 23S rRNA
LIMDEABD_01056	1.97e-187	-	-	-	EG	-	-	-	COG COG0697 Permeases of the drug metabolite transporter (DMT) superfamily
LIMDEABD_01058	0.0	rpsA	-	-	J	ko:K02945	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein S1
LIMDEABD_01059	3.03e-298	yfkN_2	3.1.3.5, 3.6.1.45	-	F	ko:K01081,ko:K11751	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Ser Thr phosphatase family protein
LIMDEABD_01060	0.0	udk2	2.7.1.48	-	FJ	ko:K00876	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	Phosphoribulokinase / Uridine kinase family
LIMDEABD_01061	0.0	gcvP	1.4.4.2	-	E	ko:K00281,ko:K00283	ko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the GcvP family
LIMDEABD_01062	1.7e-105	slyD	5.2.1.8	-	G	ko:K03775	-	ko00000,ko01000,ko03110	FKBP-type peptidyl-prolyl cis-trans isomerase
LIMDEABD_01063	7.68e-201	-	-	-	KLT	-	-	-	WG containing repeat
LIMDEABD_01064	0.0	-	-	-	G	-	-	-	Domain of unknown function (DUF4954)
LIMDEABD_01065	7.42e-177	-	-	-	S	-	-	-	von Willebrand factor (vWF) type A domain
LIMDEABD_01066	3.28e-119	-	-	-	S	-	-	-	protein trimerization
LIMDEABD_01067	4.48e-205	trxB	1.8.1.9	-	C	ko:K00384	ko00450,map00450	ko00000,ko00001,ko01000	Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
LIMDEABD_01069	5.46e-206	rnz	3.1.26.11	-	S	ko:K00784	ko03013,map03013	ko00000,ko00001,ko01000,ko03016	Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA
LIMDEABD_01070	2.14e-143	aviRb	-	-	J	ko:K03437	-	ko00000,ko03016	SpoU rRNA Methylase family
LIMDEABD_01072	2.57e-235	pdxA	1.1.1.262	-	H	ko:K00097	ko00750,ko01100,map00750,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the PdxA family
LIMDEABD_01073	0.0	thrS	6.1.1.3	-	J	ko:K01868	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIMDEABD_01074	1.23e-100	infC	-	-	J	ko:K02520	-	ko00000,ko03012,ko03029	translation initiation factor IF-3
LIMDEABD_01075	1.87e-204	luxE	-	-	H	-	-	-	PFAM Acyl-protein synthetase, LuxE
LIMDEABD_01076	5.55e-136	-	-	-	M	-	-	-	Cytidylyltransferase
LIMDEABD_01077	1.82e-197	-	-	-	-	-	-	-	-
LIMDEABD_01078	1.42e-218	-	-	-	M	-	-	-	Glycosyltransferase, group 2 family protein
LIMDEABD_01079	1.67e-221	-	-	CE1	Q	ko:K03932	-	ko00000	Esterase PHB depolymerase
LIMDEABD_01080	0.0	clpB	-	-	O	ko:K03695	ko04213,map04213	ko00000,ko00001,ko03110	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
LIMDEABD_01081	0.0	dnaX	2.7.7.7	-	H	ko:K02343	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LIMDEABD_01082	4.24e-306	tyrS	6.1.1.1	-	J	ko:K01866	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LIMDEABD_01083	4.85e-68	folB	1.13.11.81, 4.1.2.25, 5.1.99.8	-	H	ko:K01633	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LIMDEABD_01084	1.2e-299	-	-	-	P	ko:K03308	-	ko00000	Sodium:neurotransmitter symporter family
LIMDEABD_01085	1.58e-272	-	-	-	C	-	-	-	C terminal of Calcineurin-like phosphoesterase
LIMDEABD_01086	9.45e-126	ribH	2.5.1.78	-	H	ko:K00794	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin
LIMDEABD_01087	2.14e-138	-	-	-	S	-	-	-	Tetratricopeptide repeat
LIMDEABD_01088	5.74e-231	recF	-	-	L	ko:K03629	ko03440,map03440	ko00000,ko00001,ko03400	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LIMDEABD_01089	2.63e-51	-	-	-	S	-	-	-	Protein of unknown function (DUF721)
LIMDEABD_01091	4.41e-203	-	-	-	M	-	-	-	OmpA family
LIMDEABD_01092	0.0	nrd	1.17.4.1	-	F	ko:K00525	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko03400	Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
LIMDEABD_01093	6.66e-67	ridA	3.5.99.10	-	J	ko:K09022	-	ko00000,ko01000	Endoribonuclease L-PSP
LIMDEABD_01094	5.32e-77	-	-	-	O	-	-	-	META domain
LIMDEABD_01095	3.66e-228	mdh	1.1.1.37	-	C	ko:K00024	ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Belongs to the LDH MDH superfamily
LIMDEABD_01096	1.57e-133	recR	-	-	L	ko:K06187	ko03440,map03440	ko00000,ko00001,ko03400	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LIMDEABD_01097	9.54e-159	batE	-	-	T	-	-	-	Tetratricopeptide repeat
LIMDEABD_01098	0.0	batD	-	-	S	-	-	-	Oxygen tolerance
LIMDEABD_01099	2.57e-18	tatA	-	-	U	ko:K03116	ko03060,ko03070,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system
LIMDEABD_01100	6.28e-123	tatC	-	-	U	ko:K03118	ko03060,ko03070,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIMDEABD_01101	1.36e-204	-	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
LIMDEABD_01102	2.02e-190	-	-	-	O	-	-	-	Domain of unknown function (DUF5117)
LIMDEABD_01103	0.0	-	-	-	O	-	-	-	Domain of unknown function (DUF5117)
LIMDEABD_01104	2.15e-70	-	-	-	S	-	-	-	PKD domain
LIMDEABD_01105	1e-71	-	-	-	N	-	-	-	Endonuclease Exonuclease Phosphatase
LIMDEABD_01106	1.5e-183	-	-	-	S	ko:K21572	-	ko00000,ko02000	Starch-binding protein
LIMDEABD_01107	0.0	-	-	-	P	-	-	-	TonB dependent receptor
LIMDEABD_01108	1.81e-24	-	-	-	PT	-	-	-	Domain of unknown function (DUF4974)
LIMDEABD_01109	1.2e-47	-	-	-	K	ko:K03088	-	ko00000,ko03021	RNA polymerase sigma-70 factor
LIMDEABD_01110	3.77e-143	-	-	-	E	-	-	-	N-terminus of Esterase_SGNH_hydro-type
LIMDEABD_01111	1.57e-44	-	-	-	S	-	-	-	Endonuclease exonuclease phosphatase family
LIMDEABD_01112	8.62e-77	-	-	-	S	-	-	-	Domain of unknown function (DUF3127)
LIMDEABD_01113	5.11e-237	fklB	5.2.1.8	-	O	ko:K03772,ko:K03773	-	ko00000,ko01000,ko03110	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
LIMDEABD_01114	2.25e-132	-	5.2.1.8	-	O	ko:K01802,ko:K03772	-	ko00000,ko01000,ko03110	Peptidyl-prolyl cis-trans isomerase
LIMDEABD_01115	7.32e-302	nhaA	-	-	P	ko:K03313	-	ko00000,ko02000	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LIMDEABD_01116	3.78e-227	speB	3.5.3.11	-	E	ko:K01480	ko00330,ko01100,map00330,map01100	ko00000,ko00001,ko00002,ko01000	Belongs to the arginase family
LIMDEABD_01117	5.73e-204	-	1.1.1.290	-	CH	ko:K03473	ko00750,ko01100,map00750,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate
LIMDEABD_01118	2.71e-247	pyrD	1.3.5.2	-	F	ko:K00254	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor
LIMDEABD_01119	1.71e-267	cinA	3.5.1.42	-	S	ko:K03742,ko:K03743	ko00760,map00760	ko00000,ko00001,ko01000	Belongs to the CinA family
LIMDEABD_01120	1.02e-46	rpmB	-	-	J	ko:K02902	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL28 family
LIMDEABD_01121	6.96e-33	rpmG	-	-	J	ko:K02913	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL33 family
LIMDEABD_01122	2.05e-24	-	-	-	S	-	-	-	Domain of unknown function (DUF4295)
LIMDEABD_01123	4.36e-160	-	-	-	M	-	-	-	Glycosyltransferase, group 1 family protein
LIMDEABD_01124	6.08e-216	-	-	-	M	-	-	-	Glycosyl transferases group 1
LIMDEABD_01125	1.69e-183	-	-	-	-	-	-	-	-
LIMDEABD_01126	8.08e-216	ftsY	-	-	U	ko:K03110	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC)
LIMDEABD_01127	1.14e-293	rimO	2.8.4.4	-	H	ko:K14441	-	ko00000,ko01000,ko03009	Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12
LIMDEABD_01128	1.5e-07	-	-	-	-	-	-	-	-
LIMDEABD_01129	9.16e-51	zapA	-	-	D	ko:K09888	-	ko00000,ko03036	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LIMDEABD_01130	6.89e-284	rny	-	-	S	ko:K18682	ko03018,map03018	ko00000,ko00001,ko01000,ko03019	Endoribonuclease that initiates mRNA decay
LIMDEABD_01131	1.85e-114	-	-	-	FJ	ko:K06950	-	ko00000	HD domain protein
LIMDEABD_01132	5.54e-202	preA	1.3.98.1	-	F	ko:K00226	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of dihydroorotate to orotate
LIMDEABD_01133	7.6e-270	gcvT	2.1.2.10	-	E	ko:K00605	ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200	ko00000,ko00001,ko00002,ko01000	The glycine cleavage system catalyzes the degradation of glycine
LIMDEABD_01134	1.62e-296	-	-	-	K	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01135	0.0	ppsA	-	-	GKT	-	-	-	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
LIMDEABD_01136	0.0	gdh	1.4.1.4	-	E	ko:K00262	ko00220,ko00250,ko00910,ko01100,map00220,map00250,map00910,map01100	ko00000,ko00001,ko01000	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
LIMDEABD_01137	2.47e-05	opuAC	-	-	S	ko:K02002	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	dextransucrase activity
LIMDEABD_01138	2.29e-292	pgi	5.3.1.9	-	G	ko:K01810	ko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the GPI family
LIMDEABD_01139	2.73e-220	gpsA	1.1.1.94	-	I	ko:K00057	ko00564,ko01110,map00564,map01110	ko00000,ko00001,ko01000	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
LIMDEABD_01140	6.41e-237	mreB	-	-	D	ko:K03569	-	ko00000,ko02048,ko03036,ko04812	Cell shape determining protein, MreB Mrl family
LIMDEABD_01141	3.56e-165	mreC	-	-	M	ko:K03570	-	ko00000,ko03036	rod shape-determining protein MreC
LIMDEABD_01142	2.31e-90	mreD	-	-	S	-	-	-	rod shape-determining protein MreD
LIMDEABD_01143	0.0	mrdA	3.4.16.4	-	M	ko:K05515	ko00550,ko01501,map00550,map01501	ko00000,ko00001,ko01000,ko01011	Penicillin-binding Protein dimerisation domain
LIMDEABD_01144	1.63e-296	rodA	-	-	D	ko:K05837	-	ko00000,ko03036	Belongs to the SEDS family
LIMDEABD_01145	0.0	-	3.6.3.8	-	P	ko:K01537	-	ko00000,ko01000	Cation transporter/ATPase, N-terminus
LIMDEABD_01146	6.14e-264	-	-	-	I	-	-	-	PAP2 family
LIMDEABD_01148	9.26e-104	-	1.6.3.4	-	C	ko:K22405	-	ko00000,ko01000	Rubrerythrin
LIMDEABD_01149	8.79e-154	yebC	-	-	K	-	-	-	transcriptional regulatory protein
LIMDEABD_01150	1.07e-82	gloA	4.4.1.5	-	E	ko:K01759	ko00620,map00620	ko00000,ko00001,ko01000	Lactoylglutathione lyase
LIMDEABD_01151	6.96e-125	rimN	2.7.7.87	-	J	ko:K07566	-	ko00000,ko01000,ko03009,ko03016	Belongs to the SUA5 family
LIMDEABD_01152	2.88e-78	-	-	-	S	ko:K07107	-	ko00000,ko01000	Thioesterase-like superfamily
LIMDEABD_01153	1.43e-191	-	-	-	EG	-	-	-	EamA-like transporter family
LIMDEABD_01154	3.72e-195	-	-	-	EG	-	-	-	COG COG0697 Permeases of the drug metabolite transporter (DMT) superfamily
LIMDEABD_01155	0.0	glaB	-	-	M	-	-	-	Alpha-galactosidase. Removes both branched alpha-1,3- linked galactose residues of blood group B antigens and linear alpha-1,3-linked galactose structures
LIMDEABD_01156	0.0	-	-	-	G	-	-	-	Glycogen debranching enzyme
LIMDEABD_01157	1.31e-245	-	-	-	S	ko:K06889	-	ko00000	of the alpha beta superfamily
LIMDEABD_01158	0.0	-	-	-	M	-	-	-	Alpha-galactosidase. Removes both branched alpha-1,3- linked galactose residues of blood group B antigens and linear alpha-1,3-linked galactose structures
LIMDEABD_01159	0.0	glaB	-	-	M	-	-	-	Alpha-galactosidase. Removes both branched alpha-1,3- linked galactose residues of blood group B antigens and linear alpha-1,3-linked galactose structures
LIMDEABD_01160	9.66e-301	-	-	-	-	-	-	-	-
LIMDEABD_01161	0.0	-	-	-	GM	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_01162	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_01163	0.0	-	3.2.1.4	GH5,GH9	S	ko:K01179	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	metallopeptidase activity
LIMDEABD_01164	1.99e-27	-	-	-	T	-	-	-	ATPase histidine kinase DNA gyrase B HSP90 domain protein
LIMDEABD_01165	1.53e-45	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01166	0.0	-	-	-	G	-	-	-	Glycogen debranching enzyme
LIMDEABD_01167	2.03e-154	-	-	-	Q	-	-	-	Methyltransferase domain
LIMDEABD_01168	5.77e-184	yitL	-	-	S	ko:K00243	-	ko00000	S1 domain
LIMDEABD_01169	0.0	-	-	-	S	ko:K06978	-	ko00000	Hydrolase CocE NonD family
LIMDEABD_01170	1.28e-143	yafV	3.5.1.3	-	S	ko:K13566	ko00250,map00250	ko00000,ko00001,ko01000	Carbon-nitrogen hydrolase
LIMDEABD_01172	0.0	uvrA2	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
LIMDEABD_01175	1.44e-59	-	-	-	C	-	-	-	Sulfatase-modifying factor enzyme 1
LIMDEABD_01176	1.05e-99	ispF	4.6.1.12	-	H	ko:K01770	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP)
LIMDEABD_01177	0.0	pepD_1	-	-	E	ko:K01270	ko00480,ko01100,map00480,map01100	ko00000,ko00001,ko01000,ko01002	Peptidase family M20/M25/M40
LIMDEABD_01178	0.0	-	-	-	P	-	-	-	Psort location OuterMembrane, score
LIMDEABD_01179	7.89e-248	ald	1.4.1.1	-	C	ko:K00259	ko00250,ko00430,ko01100,map00250,map00430,map01100	ko00000,ko00001,ko01000	Belongs to the AlaDH PNT family
LIMDEABD_01180	0.0	leuA	2.3.3.13	-	E	ko:K01649	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230	br01601,ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIMDEABD_01181	1.15e-313	leuC	4.2.1.33, 4.2.1.35	-	E	ko:K01703	ko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230	br01601,ko00000,ko00001,ko00002,ko01000	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LIMDEABD_01182	7.62e-125	leuD	4.2.1.33, 4.2.1.35	-	E	ko:K01704	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	br01601,ko00000,ko00001,ko00002,ko01000	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LIMDEABD_01183	0.0	leuA_1	2.3.1.182	-	E	ko:K09011	ko00290,ko00660,ko01100,ko01210,ko01230,map00290,map00660,map01100,map01210,map01230	br01601,ko00000,ko00001,ko00002,ko01000	LeuA allosteric (dimerisation) domain
LIMDEABD_01184	2.88e-231	leuB	1.1.1.85	-	CE	ko:K00052	ko00290,ko00660,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map01100,map01110,map01210,map01230	br01601,ko00000,ko00001,ko00002,ko01000	Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate
LIMDEABD_01185	2.43e-240	obg	-	-	S	ko:K03979	-	ko00000,ko01000,ko03009	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LIMDEABD_01186	7.06e-122	-	-	-	S	-	-	-	PFAM nucleic acid binding, OB-fold, tRNA
LIMDEABD_01187	8e-135	-	-	-	S	-	-	-	PFAM nucleic acid binding, OB-fold, tRNA
LIMDEABD_01188	1.07e-277	serB	3.1.3.3	-	ET	ko:K01079	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko01009	phosphoserine phosphatase
LIMDEABD_01189	7.89e-181	mscS	-	-	M	ko:K03442	-	ko00000,ko02000	Small-conductance mechanosensitive channel
LIMDEABD_01191	5.92e-82	-	-	-	S	-	-	-	COG NOG14473 non supervised orthologous group
LIMDEABD_01192	7.37e-107	mgsA	4.2.3.3	-	G	ko:K01734	ko00640,ko01120,map00640,map01120	ko00000,ko00001,ko01000	methylglyoxal synthase
LIMDEABD_01193	0.0	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 2 family
LIMDEABD_01195	1.1e-233	dus	-	-	J	-	-	-	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIMDEABD_01196	1.29e-256	corC_1	-	-	P	ko:K03699	-	ko00000,ko02042	Psort location CytoplasmicMembrane, score
LIMDEABD_01197	0.0	argS	6.1.1.19	-	J	ko:K01887	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Arginyl tRNA synthetase N terminal dom
LIMDEABD_01198	7.46e-118	-	2.7.11.1	-	-	ko:K14949	ko05152,map05152	ko00000,ko00001,ko01000,ko01001	-
LIMDEABD_01199	4.27e-52	-	-	-	S	-	-	-	COG NOG23371 non supervised orthologous group
LIMDEABD_01200	2.94e-167	znuC	-	-	P	ko:K09817	ko02010,map02010	ko00000,ko00001,ko00002,ko01000,ko02000	ABC transporter, ATP-binding protein
LIMDEABD_01201	4.83e-142	mntA	-	-	P	ko:K09815,ko:K11707	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Zinc-uptake complex component A periplasmic
LIMDEABD_01202	6.03e-135	-	-	-	P	ko:K21990,ko:K21993	-	ko00000,ko02000	Formate/nitrite transporter
LIMDEABD_01203	5.62e-54	-	-	-	K	-	-	-	Helix-turn-helix XRE-family like proteins
LIMDEABD_01204	3.82e-77	hinT	-	-	FG	ko:K02503	-	ko00000,ko04147	HIT domain
LIMDEABD_01208	0.0	relA	2.7.6.5	-	KT	ko:K00951	ko00230,map00230	ko00000,ko00001,ko01000	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LIMDEABD_01209	2.19e-225	recA	-	-	L	ko:K03553	ko03440,map03440	ko00000,ko00001,ko00002,ko03400	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LIMDEABD_01210	2.41e-108	bcp	1.11.1.15	-	O	ko:K03564	-	ko00000,ko01000	Redoxin
LIMDEABD_01212	2.09e-90	-	-	-	G	-	-	-	Cupin domain
LIMDEABD_01213	1.19e-197	-	-	-	K	-	-	-	HTH domain protein
LIMDEABD_01214	1.35e-86	-	-	-	S	ko:K06889	-	ko00000	Serine aminopeptidase, S33
LIMDEABD_01215	2.11e-34	-	-	-	CO	-	-	-	Domain of unknown function (DUF4369)
LIMDEABD_01216	0.0	dnaA	-	-	L	ko:K02313	ko02020,ko04112,map02020,map04112	ko00000,ko00001,ko03032,ko03036	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LIMDEABD_01217	0.0	pgcA	5.4.2.2	-	G	ko:K01835	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II
LIMDEABD_01218	1.1e-161	-	-	-	KT	-	-	-	BlaR1 peptidase M56
LIMDEABD_01219	2e-64	ypjD	-	-	J	-	-	-	MazG nucleotide pyrophosphohydrolase domain protein
LIMDEABD_01220	8.89e-134	mdmC	2.1.1.104	-	S	ko:K00588	ko00360,ko00940,ko00941,ko00945,ko01100,ko01110,map00360,map00940,map00941,map00945,map01100,map01110	ko00000,ko00001,ko00002,ko01000	O-methyltransferase
LIMDEABD_01221	5.93e-128	-	-	-	E	-	-	-	DJ-1 PfpI family protein
LIMDEABD_01222	1.86e-255	-	-	-	S	-	-	-	Insulinase (Peptidase family M16)
LIMDEABD_01223	0.0	uvrA1	-	-	L	ko:K03701	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
LIMDEABD_01224	2.17e-121	yigZ	-	-	S	-	-	-	Uncharacterized protein family UPF0029
LIMDEABD_01225	1.92e-301	lepB	3.4.21.89	-	U	ko:K03100	ko02024,ko03060,map02024,map03060	ko00000,ko00001,ko01000,ko01002	Signal peptidase I
LIMDEABD_01226	5.68e-158	dapB	1.17.1.8	-	E	ko:K00215	ko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the DapB family
LIMDEABD_01227	9.92e-169	truA	5.4.99.12	-	J	ko:K06173	-	ko00000,ko01000,ko03016	Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
LIMDEABD_01228	5.82e-35	-	-	-	-	-	-	-	-
LIMDEABD_01229	7.02e-131	copA	3.6.3.4, 3.6.3.54	-	P	ko:K01533,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	Heavy-metal-associated domain
LIMDEABD_01230	3.09e-137	-	-	-	-	-	-	-	-
LIMDEABD_01231	3.59e-134	-	-	-	S	ko:K09939	-	ko00000	Putative PepSY_TM-like
LIMDEABD_01232	1.06e-299	-	-	-	S	-	-	-	Domain of unknown function (DUF4857)
LIMDEABD_01233	6.35e-154	-	-	-	-	-	-	-	-
LIMDEABD_01234	3.77e-216	-	-	-	V	ko:K01990,ko:K19340	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
LIMDEABD_01235	1.75e-296	-	-	-	S	-	-	-	Protein of unknown function (DUF4876)
LIMDEABD_01236	0.0	-	-	-	-	-	-	-	-
LIMDEABD_01238	0.0	-	-	-	P	-	-	-	TonB-dependent Receptor Plug Domain
LIMDEABD_01239	8.6e-118	fldA	-	-	C	ko:K03839	-	ko00000	Low-potential electron donor to a number of redox enzymes
LIMDEABD_01240	8.1e-87	-	-	-	S	-	-	-	hmm pf09633
LIMDEABD_01241	1.33e-57	-	2.7.1.4	-	G	ko:K00847	ko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIMDEABD_01242	4.87e-87	-	-	-	U	-	-	-	Relaxase/Mobilisation nuclease domain
LIMDEABD_01243	2.96e-28	-	-	-	P	-	-	-	TonB dependent receptor
LIMDEABD_01244	2.38e-09	-	-	-	PT	-	-	-	Domain of unknown function (DUF4974)
LIMDEABD_01245	4.08e-08	-	-	-	K	ko:K03088	-	ko00000,ko03021	Belongs to the sigma-70 factor family. ECF subfamily
LIMDEABD_01246	0.0	ahcY	3.3.1.1	-	H	ko:K01251	ko00270,ko01100,map00270,map01100	ko00000,ko00001,ko00002,ko01000,ko01009,ko04147	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
LIMDEABD_01247	6.77e-70	ribF	2.7.1.26, 2.7.7.2	-	H	ko:K11753	ko00740,ko01100,ko01110,map00740,map01100,map01110	ko00000,ko00001,ko00002,ko01000	riboflavin kinase activity
LIMDEABD_01248	3.15e-215	-	-	-	S	-	-	-	AI-2E family transporter
LIMDEABD_01249	2.37e-151	psd	4.1.1.65	-	I	ko:K01613	ko00564,ko01100,ko01110,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer)
LIMDEABD_01250	2.73e-164	cdsA	2.7.7.41	-	S	ko:K00981	ko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070	ko00000,ko00001,ko00002,ko01000	Belongs to the CDS family
LIMDEABD_01251	0.0	ftsH	-	-	O	ko:K03798	-	ko00000,ko00002,ko01000,ko01002,ko03110	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LIMDEABD_01252	2.07e-73	rsfS	-	-	J	ko:K09710	-	ko00000,ko03009	Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation
LIMDEABD_01254	3.29e-203	oxyR	-	-	K	ko:K04761	ko02026,map02026	ko00000,ko00001,ko03000	LysR substrate binding domain protein
LIMDEABD_01255	2.54e-248	trpS	6.1.1.2	-	J	ko:K01867	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-I aminoacyl-tRNA synthetase family
LIMDEABD_01256	0.0	clcB	-	-	P	ko:K03281	-	ko00000	Voltage gated chloride channel
LIMDEABD_01257	5.19e-68	-	-	-	KT	-	-	-	PAS domain
LIMDEABD_01258	1.91e-213	kdsD	5.3.1.13	-	M	ko:K06041	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the SIS family. GutQ KpsF subfamily
LIMDEABD_01259	1.07e-163	kdsA	2.5.1.55	-	M	ko:K01627	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01005	Belongs to the KdsA family
LIMDEABD_01260	1.42e-165	kdsB	2.7.7.38	-	M	ko:K00979	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01005	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LIMDEABD_01261	0.0	lon	3.4.21.53	-	O	ko:K01338	ko04112,map04112	ko00000,ko00001,ko01000,ko01002	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LIMDEABD_01262	0.0	valS	6.1.1.9	-	J	ko:K01873	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner
LIMDEABD_01263	1.4e-143	-	-	-	CO	-	-	-	AhpC/TSA family
LIMDEABD_01264	2.82e-105	rnhA	3.1.26.4	-	L	ko:K03469	ko03030,map03030	ko00000,ko00001,ko01000,ko03032	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LIMDEABD_01265	0.0	msbA	-	-	V	ko:K06147,ko:K11085	ko02010,map02010	ko00000,ko00001,ko01000,ko02000	ABC transporter, ATP-binding protein
LIMDEABD_01266	3.14e-102	maa	2.3.1.18, 2.3.1.79	-	S	ko:K00633,ko:K00661	-	ko00000,ko01000	Bacterial transferase hexapeptide
LIMDEABD_01267	1.63e-107	-	-	-	T	-	-	-	PAS domain S-box protein
LIMDEABD_01268	0.0	ileS	6.1.1.5	-	J	ko:K01870	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LIMDEABD_01269	7.21e-81	yocK	-	-	T	-	-	-	Prokaryotic dksA/traR C4-type zinc finger
LIMDEABD_01270	0.0	-	-	-	M	-	-	-	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LIMDEABD_01271	9.05e-195	-	-	-	KT	-	-	-	BlaR1 peptidase M56
LIMDEABD_01272	4.61e-71	-	-	-	K	-	-	-	Transcriptional regulator, BlaI MecI CopY family
LIMDEABD_01273	4.45e-156	-	-	-	G	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01274	2.29e-168	murQ	4.2.1.126	-	G	ko:K07106	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko01000	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
LIMDEABD_01275	3.24e-216	comEA	-	-	L	-	-	-	Helix-hairpin-helix motif
LIMDEABD_01276	1.26e-34	rpsU	-	-	J	ko:K02970	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bS21 family
LIMDEABD_01277	0.0	glnA	6.3.1.2	-	S	ko:K01915	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727	ko00000,ko00001,ko01000,ko04147	Glutamine synthetase, catalytic domain
LIMDEABD_01278	0.0	mutA	5.4.99.2	-	I	ko:K01847	ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Methylmalonyl-CoA mutase
LIMDEABD_01279	0.0	mutB	5.4.99.2	-	I	ko:K01847	ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	B12 binding domain
LIMDEABD_01281	1.91e-245	yqhD	-	-	C	ko:K08325	ko00640,map00640	ko00000,ko00001,ko01000	alcohol dehydrogenase
LIMDEABD_01282	0.0	ppiD	5.2.1.8	-	O	ko:K01802,ko:K03770	-	ko00000,ko01000,ko03110	SurA N-terminal domain
LIMDEABD_01283	6.48e-271	tlyC	-	-	S	ko:K03699	-	ko00000,ko02042	Transporter associated domain
LIMDEABD_01284	1.12e-112	-	-	-	S	-	-	-	Lipopolysaccharide-assembly, LptC-related
LIMDEABD_01285	1.52e-277	-	-	-	S	-	-	-	Tetratricopeptide repeat protein
LIMDEABD_01286	9.39e-282	-	-	-	I	-	-	-	Psort location OuterMembrane, score
LIMDEABD_01287	6.11e-152	coaX	2.7.1.33	-	H	ko:K03525	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
LIMDEABD_01288	0.0	mfd	-	-	L	ko:K03723	ko03420,map03420	ko00000,ko00001,ko01000,ko03400	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LIMDEABD_01289	0.0	rng	-	-	J	ko:K08301	-	ko00000,ko01000,ko03009,ko03019	Ribonuclease E/G family
LIMDEABD_01290	0.000144	-	-	-	-	-	-	-	-
LIMDEABD_01291	4.99e-53	hupA	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Belongs to the bacterial histone-like protein family
LIMDEABD_01292	5.17e-177	-	-	-	S	ko:K07148	-	ko00000	Protein of unknown function (DUF418)
LIMDEABD_01293	0.0	-	-	-	KT	-	-	-	PglZ domain
LIMDEABD_01294	1.7e-87	yjeE	-	-	S	ko:K06925	-	ko00000,ko03016	Threonylcarbamoyl adenosine biosynthesis protein TsaE
LIMDEABD_01295	2.82e-140	-	-	-	E	-	-	-	Transglutaminase-like superfamily
LIMDEABD_01296	6.51e-86	-	-	-	S	-	-	-	Polyketide cyclase
LIMDEABD_01297	8.07e-258	-	-	-	L	ko:K03555	ko03430,map03430	ko00000,ko00001,ko03400	MutS domain V
LIMDEABD_01298	7.72e-38	-	-	-	-	-	-	-	-
LIMDEABD_01299	5.05e-106	-	-	-	KT	ko:K02477,ko:K07707	ko02020,ko02024,map02020,map02024	ko00000,ko00001,ko00002,ko02022	phosphorelay signal transduction system
LIMDEABD_01300	8.72e-114	-	-	-	F	-	-	-	Belongs to the Nudix hydrolase family
LIMDEABD_01301	0.0	pop	-	-	EU	-	-	-	X-Pro dipeptidyl-peptidase (S15 family)
LIMDEABD_01302	4.01e-156	zupT	-	-	P	ko:K07238	-	ko00000,ko02000	Mediates zinc uptake. May also transport other divalent cations
LIMDEABD_01303	2.22e-179	yrbG	-	-	P	ko:K07301	-	ko00000,ko02000	K -dependent Na Ca exchanger family protein
LIMDEABD_01304	2.07e-221	mutY	-	-	L	ko:K03575	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	NUDIX domain
LIMDEABD_01305	3.79e-23	-	-	-	S	ko:K06975	-	ko00000	acetyltransferase
LIMDEABD_01306	3.52e-40	-	-	-	S	-	-	-	2TM domain
LIMDEABD_01307	1.29e-93	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
LIMDEABD_01308	6.75e-113	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
LIMDEABD_01309	7.18e-57	-	-	-	K	-	-	-	Winged helix DNA-binding domain
LIMDEABD_01310	1.37e-182	-	-	-	S	-	-	-	Lysine exporter LysO
LIMDEABD_01311	0.0	-	-	-	M	ko:K07289	-	ko00000	protein involved in outer membrane biogenesis
LIMDEABD_01312	2.63e-58	-	2.3.1.183	-	K	ko:K03823	ko00440,ko01130,map00440,map01130	ko00000,ko00001,ko01000	Acetyltransferase (GNAT) domain
LIMDEABD_01313	8.36e-160	dpm1	2.4.1.83	GT2	S	ko:K00721	ko00510,ko01100,map00510,map01100	ko00000,ko00001,ko01000,ko01003	Glycosyl transferase family 2
LIMDEABD_01314	3.1e-80	-	-	-	S	-	-	-	GtrA-like protein
LIMDEABD_01315	0.0	-	-	-	M	-	-	-	Dolichyl-phosphate-mannose-protein mannosyltransferase
LIMDEABD_01316	4.23e-152	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_01317	7.94e-93	-	-	-	H	-	-	-	response to peptide
LIMDEABD_01318	1.18e-148	-	-	-	-	-	-	-	-
LIMDEABD_01319	0.0	plc	4.6.1.13	-	U	ko:K01771	ko00562,map00562	ko00000,ko00001,ko01000	Involved in the tonB-independent uptake of proteins
LIMDEABD_01322	1.74e-241	-	-	-	M	-	-	-	OmpA family
LIMDEABD_01324	1.8e-182	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_01326	0.0	uvrC	-	-	L	ko:K03703	ko03420,map03420	ko00000,ko00001,ko03400	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
LIMDEABD_01328	2.31e-285	-	-	-	P	-	-	-	TonB-dependent receptor
LIMDEABD_01329	4.85e-145	-	-	-	M	ko:K07001	-	ko00000	Phospholipase, patatin family
LIMDEABD_01330	1.08e-112	-	-	-	J	-	-	-	Psort location Cytoplasmic, score
LIMDEABD_01331	1.47e-15	-	6.3.3.2	-	H	ko:K01934	ko00670,ko01100,map00670,map01100	ko00000,ko00001,ko01000	5-formyltetrahydrofolate cyclo-ligase family
LIMDEABD_01332	9.86e-149	sdhC	-	-	S	ko:K00241	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002	cytochrome B subunit, b558 family
LIMDEABD_01333	0.0	sdhA	1.3.5.1, 1.3.5.4	-	C	ko:K00239	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko05134,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map05134	ko00000,ko00001,ko00002,ko01000	Fumarate reductase flavoprotein C-term
LIMDEABD_01334	3.53e-172	frdB	1.3.5.1, 1.3.5.4	-	C	ko:K00240	ko00020,ko00190,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00190,map00650,map00720,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Succinate dehydrogenase fumarate reductase
LIMDEABD_01335	1.11e-91	-	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	PspC domain
LIMDEABD_01336	1.19e-37	-	-	-	KT	-	-	-	PspC domain protein
LIMDEABD_01337	1.34e-73	-	-	-	K	ko:K10947	-	ko00000,ko03000	Transcriptional regulator
LIMDEABD_01338	1.07e-73	-	-	-	KT	-	-	-	Putative auto-transporter adhesin, head GIN domain
LIMDEABD_01339	1.15e-239	-	-	-	KT	ko:K03973	-	ko00000,ko02048,ko03000	PspC domain
LIMDEABD_01340	5.55e-220	pfkA	2.7.1.11	-	G	ko:K00850	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04152,ko05230,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04152,map05230	ko00000,ko00001,ko00002,ko01000,ko01009,ko03019	Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis
LIMDEABD_01341	2.98e-223	-	-	-	G	-	-	-	pfkB family carbohydrate kinase
LIMDEABD_01342	2.47e-182	-	-	-	S	-	-	-	Glycosyltransferase like family 2
LIMDEABD_01343	0.0	dsbD	1.8.1.8	-	CO	ko:K04084	-	ko00000,ko01000,ko03110	Disulphide bond corrector protein DsbC
LIMDEABD_01344	6.88e-189	cysK	2.5.1.47	-	E	ko:K01738,ko:K12339	ko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Pyridoxal-phosphate dependent enzyme
LIMDEABD_01345	1.29e-225	-	3.1.6.1	-	P	ko:K01130	ko00140,ko00600,map00140,map00600	ko00000,ko00001,ko01000	C-terminal region of aryl-sulfatase
LIMDEABD_01348	0.0	-	-	-	C	-	-	-	Cysteine-rich domain
LIMDEABD_01349	1.01e-64	-	-	-	C	-	-	-	4Fe-4S dicluster domain
LIMDEABD_01350	1.58e-219	-	1.8.7.3, 1.8.98.4, 1.8.98.5, 1.8.98.6	-	C	ko:K03388	ko00680,ko01100,ko01120,ko01200,map00680,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	NAD(P)-binding Rossmann-like domain
LIMDEABD_01351	7.31e-271	-	1.8.7.3, 1.8.98.4, 1.8.98.5, 1.8.98.6	-	C	ko:K03389	ko00680,ko01100,ko01120,ko01200,map00680,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Cysteine-rich domain
LIMDEABD_01352	5.26e-171	-	1.8.7.3, 1.8.98.4, 1.8.98.5, 1.8.98.6	-	C	ko:K03390	ko00680,ko01100,ko01120,ko01200,map00680,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	4Fe-4S dicluster domain
LIMDEABD_01353	3.64e-99	folA	1.5.1.3	-	H	ko:K00287	ko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LIMDEABD_01354	1.49e-50	yihX	3.1.3.10, 3.1.3.104	-	S	ko:K07025,ko:K20866,ko:K21063	ko00010,ko00740,ko01100,ko01110,ko01120,map00010,map00740,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000	Haloacid dehalogenase-like hydrolase
LIMDEABD_01355	1.98e-208	thyA	2.1.1.45	-	F	ko:K00560	ko00240,ko00670,ko01100,ko01523,map00240,map00670,map01100,map01523	ko00000,ko00001,ko00002,ko01000	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
LIMDEABD_01356	2.08e-146	lpxH	3.6.1.54	-	S	ko:K03269	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01005	Calcineurin-like phosphoesterase
LIMDEABD_01357	2.02e-226	-	-	-	CO	-	-	-	Thioredoxin-like
LIMDEABD_01358	7.87e-134	-	-	-	S	-	-	-	Domain of unknown function (DUF4290)
LIMDEABD_01359	9e-212	ntrX	-	-	T	-	-	-	Sigma-54 interaction domain
LIMDEABD_01360	5.27e-129	-	3.1.3.18	-	G	ko:K01091	ko00630,ko01100,ko01110,ko01130,map00630,map01100,map01110,map01130	ko00000,ko00001,ko01000	Phosphoglycolate phosphatase
LIMDEABD_01361	4.83e-312	nhaC	-	-	C	ko:K03315	-	ko00000,ko02000	Na+/H+ antiporter family
LIMDEABD_01362	1.46e-33	-	-	-	S	-	-	-	Domain of unknown function (DUF4492)
LIMDEABD_01363	0.0	cydA	1.10.3.14	-	C	ko:K00425	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	Cytochrome bd terminal oxidase subunit I
LIMDEABD_01364	5.14e-250	cydB	1.10.3.14	-	C	ko:K00426	ko00190,ko01100,ko02020,map00190,map01100,map02020	ko00000,ko00001,ko00002,ko01000	Cytochrome bd terminal oxidase subunit II
LIMDEABD_01365	6.08e-198	fabI	1.3.1.10, 1.3.1.9	-	I	ko:K00208	ko00061,ko00333,ko00780,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01100,map01130,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Enoyl-(Acyl carrier protein) reductase
LIMDEABD_01367	2.75e-46	-	-	-	L	ko:K03530	-	ko00000,ko03032,ko03036,ko03400	Belongs to the bacterial histone-like protein family
LIMDEABD_01368	2.31e-271	aspC2	2.6.1.1, 2.6.1.2, 2.6.1.66	-	E	ko:K00812,ko:K14260	ko00220,ko00250,ko00270,ko00290,ko00330,ko00350,ko00360,ko00400,ko00401,ko00950,ko00960,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map00250,map00270,map00290,map00330,map00350,map00360,map00400,map00401,map00950,map00960,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko01000,ko01007	DegT/DnrJ/EryC1/StrS aminotransferase family
LIMDEABD_01369	3.2e-296	fadL	-	-	I	ko:K06076	-	ko00000,ko02000	Outer membrane protein transport protein (OMPP1/FadL/TodX)
LIMDEABD_01371	1.78e-267	sdaA	4.3.1.17	-	E	ko:K01752	ko00260,ko00270,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map01100,map01110,map01130,map01200,map01230	ko00000,ko00001,ko01000	Serine dehydratase alpha chain
LIMDEABD_01373	0.0	ramA_2	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01374	2.67e-121	-	-	-	S	ko:K07078	-	ko00000	oxidoreductase related to nitroreductase
LIMDEABD_01375	4.78e-189	-	-	-	C	-	-	-	acyl-CoA reductase
LIMDEABD_01376	1.8e-93	-	-	-	S	-	-	-	Plasmid pRiA4b ORF-3-like protein
LIMDEABD_01377	2.3e-183	miaA	2.5.1.75	-	H	ko:K00791	ko00908,ko01100,ko01110,map00908,map01100,map01110	ko00000,ko00001,ko01000,ko01006,ko03016	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LIMDEABD_01379	0.0	eptA	2.7.8.43	-	S	ko:K03760	ko01503,map01503	ko00000,ko00001,ko00002,ko01000,ko01005	lipid A phosphoethanolamine transferase, associated with polymyxin resistance
LIMDEABD_01380	7.66e-211	-	-	-	S	-	-	-	PHP domain protein
LIMDEABD_01381	0.0	-	-	-	P	ko:K07085	-	ko00000	TrkA C-terminal domain protein
LIMDEABD_01383	5.88e-113	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01384	3.64e-93	nrdG	1.97.1.4	-	O	ko:K04068	-	ko00000,ko01000	anaerobic ribonucleoside-triphosphate reductase activating protein
LIMDEABD_01385	0.0	nrdD	1.1.98.6	-	F	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Anaerobic ribonucleoside-triphosphate reductase
LIMDEABD_01386	2.88e-170	-	-	-	C	ko:K07138	-	ko00000	Fe-S center protein
LIMDEABD_01387	3.85e-79	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
LIMDEABD_01388	4.97e-309	-	-	-	H	ko:K02014	-	ko00000,ko02000	COG COG4771 Outer membrane receptor for ferrienterochelin and colicins
LIMDEABD_01389	4.94e-68	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01390	1.17e-217	-	-	-	C	ko:K07079	-	ko00000	4Fe-4S dicluster domain
LIMDEABD_01391	3.01e-157	-	-	-	S	-	-	-	S1 P1 nuclease
LIMDEABD_01392	5.87e-290	rho	-	-	K	ko:K03628	ko03018,map03018	ko00000,ko00001,ko03019,ko03021	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LIMDEABD_01393	3.78e-168	-	-	-	K	-	-	-	transcriptional regulator (AraC family)
LIMDEABD_01394	9.64e-92	-	-	-	C	-	-	-	Flavodoxin
LIMDEABD_01395	3.24e-168	glpF	-	-	G	ko:K02440	-	ko00000,ko02000	Belongs to the MIP aquaporin (TC 1.A.8) family
LIMDEABD_01396	0.0	glpK	2.7.1.30	-	H	ko:K00864	ko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626	ko00000,ko00001,ko01000,ko04147	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LIMDEABD_01397	2.12e-174	-	3.2.1.78	GH26	G	ko:K01218	ko00051,ko02024,map00051,map02024	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 26 family
LIMDEABD_01398	9.63e-233	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 5 (cellulase A) family
LIMDEABD_01399	3.06e-216	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 5 (cellulase A) family
LIMDEABD_01401	1.56e-91	-	-	-	-	-	-	-	-
LIMDEABD_01402	1.26e-214	-	-	-	GM	ko:K21572	-	ko00000,ko02000	Pfam:SusD
LIMDEABD_01403	0.0	-	-	-	P	-	-	-	TonB dependent receptor
LIMDEABD_01404	6.01e-191	-	2.4.1.339, 2.4.1.340	GH130	G	ko:K20885	-	ko00000,ko01000	Pfam:DUF377
LIMDEABD_01405	1.65e-259	-	-	-	S	ko:K03307	-	ko00000	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIMDEABD_01406	8.9e-133	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
LIMDEABD_01407	0.0	-	3.2.1.25	-	G	ko:K01192	ko00511,ko04142,map00511,map04142	ko00000,ko00001,ko01000	Glycosyl hydrolase family 2, sugar binding domain protein
LIMDEABD_01408	1.48e-185	-	-	-	S	-	-	-	Domain of unknown function (DUF4886)
LIMDEABD_01410	0.0	-	6.2.1.3	-	I	ko:K01897	ko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920	ko00000,ko00001,ko00002,ko01000,ko01004,ko04147	AMP-binding enzyme
LIMDEABD_01411	0.0	lepA	-	-	M	ko:K03596	ko05134,map05134	ko00000,ko00001	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner
LIMDEABD_01412	1.37e-269	lysA	4.1.1.20	-	E	ko:K01586	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	diaminopimelate decarboxylase
LIMDEABD_01413	2.67e-196	-	-	-	EG	ko:K08978	-	ko00000,ko02000	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_01414	0.0	trpB	4.2.1.20	-	E	ko:K06001	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
LIMDEABD_01415	0.0	pheT	6.1.1.20	-	J	ko:K01890	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
LIMDEABD_01416	1.06e-79	yhhN	-	-	S	-	-	-	YhhN family
LIMDEABD_01417	0.0	-	3.2.1.52	GH20	G	ko:K12373	ko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142	ko00000,ko00001,ko00002,ko01000,ko03110	Glycosyl hydrolase family 20, catalytic domain
LIMDEABD_01418	7.25e-168	mazG	3.6.1.66	-	S	ko:K02428	ko00230,map00230	ko00000,ko00001,ko01000	MazG nucleotide pyrophosphohydrolase domain
LIMDEABD_01419	2.99e-107	paaY	-	-	S	ko:K02617,ko:K08279	-	ko00000	Bacterial transferase hexapeptide
LIMDEABD_01420	2.23e-283	-	-	-	T	-	-	-	Histidine kinase
LIMDEABD_01421	1.04e-151	-	-	-	KT	-	-	-	COG3279 Response regulator of the LytR AlgR family
LIMDEABD_01422	1.06e-50	-	-	-	-	-	-	-	-
LIMDEABD_01423	2.58e-78	-	-	-	-	-	-	-	-
LIMDEABD_01424	5.16e-175	-	-	-	S	-	-	-	PKD-like family
LIMDEABD_01425	5.61e-127	-	-	-	CO	-	-	-	alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LIMDEABD_01426	5.97e-146	-	-	-	CO	-	-	-	SPTR Thioredoxin family protein
LIMDEABD_01428	7.57e-109	hpt	2.4.2.8	-	F	ko:K00760	ko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110	ko00000,ko00001,ko01000	Belongs to the purine pyrimidine phosphoribosyltransferase family
LIMDEABD_01429	4.85e-143	queE	4.3.99.3	-	H	ko:K10026	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko01000,ko03016	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds
LIMDEABD_01430	1.17e-47	-	-	-	D	-	-	-	Septum formation initiator
LIMDEABD_01431	1.54e-187	-	2.7.4.16	-	H	ko:K00946	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LIMDEABD_01432	1.15e-83	aroQ	4.2.1.10	-	E	ko:K03786	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes a trans-dehydration via an enolate intermediate
LIMDEABD_01433	0.0	pyk	2.7.1.40	-	G	ko:K00873	ko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Pyruvate kinase, barrel domain
LIMDEABD_01434	6.89e-275	-	-	-	S	-	-	-	Polysaccharide biosynthesis protein
LIMDEABD_01435	4.15e-06	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
LIMDEABD_01437	4.28e-234	buk	2.7.2.7	-	H	ko:K00929	ko00650,ko01100,map00650,map01100	ko00000,ko00001,ko01000	Belongs to the acetokinase family
LIMDEABD_01438	1.11e-207	ptb	2.3.1.19	-	C	ko:K00634	ko00650,ko01100,map00650,map01100	ko00000,ko00001,ko01000	Phosphate acetyl/butaryl transferase
LIMDEABD_01439	1.14e-271	ackA	2.7.2.1	-	H	ko:K00925	ko00430,ko00620,ko00640,ko00680,ko00720,ko01100,ko01120,ko01200,map00430,map00620,map00640,map00680,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LIMDEABD_01440	1.19e-68	crcB	-	-	D	ko:K06199	-	ko00000,ko02000	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LIMDEABD_01441	2.31e-244	proA	1.2.1.41	-	E	ko:K00147	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LIMDEABD_01442	3.68e-237	proB	2.7.2.11	-	E	ko:K00931	ko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
LIMDEABD_01443	1.21e-142	-	-	-	T	ko:K07658	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
LIMDEABD_01444	0.0	-	3.6.4.13	-	L	ko:K05592	ko03018,map03018	ko00000,ko00001,ko01000,ko03009,ko03019	Belongs to the DEAD box helicase family
LIMDEABD_01445	0.0	-	-	-	A	-	-	-	Domain of Unknown Function (DUF349)
LIMDEABD_01446	0.0	pyrG	6.3.4.2	-	F	ko:K01937	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates
LIMDEABD_01447	0.0	yidC	-	-	U	ko:K03217	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044,ko03029	Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins
LIMDEABD_01448	1.44e-176	-	-	-	S	-	-	-	amine dehydrogenase activity
LIMDEABD_01449	7.14e-195	-	-	-	-	-	-	-	-
LIMDEABD_01450	1.34e-177	xynZ	-	-	S	-	-	-	Putative esterase
LIMDEABD_01451	6.29e-272	rlmI	2.1.1.191	-	J	ko:K06969	-	ko00000,ko01000,ko03009	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
LIMDEABD_01452	2.59e-129	rnd	-	-	L	-	-	-	3'-5' exonuclease
LIMDEABD_01453	0.0	recQ2	3.6.4.12	-	L	ko:K03654	ko03018,map03018	ko00000,ko00001,ko01000,ko03400	ATP-dependent DNA helicase RecQ
LIMDEABD_01454	1.4e-36	-	-	-	S	-	-	-	Coenzyme PQQ synthesis protein D (PqqD)
LIMDEABD_01456	0.0	-	-	-	P	-	-	-	receptor
LIMDEABD_01457	2.9e-56	-	-	-	P	ko:K07213,ko:K08364	ko04978,map04978	ko00000,ko00001,ko02000	mercury ion transmembrane transporter activity
LIMDEABD_01459	8.9e-53	-	-	-	K	ko:K03088	-	ko00000,ko03021	Belongs to the sigma-70 factor family. ECF subfamily
LIMDEABD_01460	1.19e-43	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score 9.46
LIMDEABD_01461	1.21e-155	-	-	-	S	-	-	-	Beta-lactamase superfamily domain
LIMDEABD_01463	3.32e-241	-	-	-	EGP	ko:K08217	-	br01600,ko00000,ko01504,ko02000	Transmembrane secretion effector
LIMDEABD_01465	2.02e-62	rplT	-	-	J	ko:K02887	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LIMDEABD_01466	3.42e-37	rpmI	-	-	J	ko:K02916	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL35 family
LIMDEABD_01467	7.32e-144	-	-	-	S	ko:K07507	-	ko00000,ko02000	Mg2 transporter-C family protein
LIMDEABD_01470	1.15e-97	-	-	-	S	-	-	-	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
LIMDEABD_01471	0.0	-	-	-	M	-	-	-	TamB, inner membrane protein subunit of TAM complex
LIMDEABD_01472	0.0	-	-	-	M	-	-	-	Surface antigen
LIMDEABD_01475	5.44e-132	-	-	-	S	-	-	-	NADPH-dependent FMN reductase
LIMDEABD_01477	1.59e-69	-	-	-	-	-	-	-	-
LIMDEABD_01479	3.55e-147	menG	2.1.1.163, 2.1.1.201	-	H	ko:K03183	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
LIMDEABD_01480	9.42e-258	lolE_1	-	-	M	ko:K09808	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	MacB-like periplasmic core domain
LIMDEABD_01481	5.09e-158	ydfG	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
LIMDEABD_01482	3.75e-160	-	-	-	S	ko:K06973	-	ko00000	Putative neutral zinc metallopeptidase
LIMDEABD_01483	1.38e-303	-	-	-	E	-	-	-	COG COG2755 Lysophospholipase L1 and related esterases
LIMDEABD_01484	0.0	algI	-	-	M	-	-	-	MBOAT, membrane-bound O-acyltransferase family
LIMDEABD_01485	1.1e-113	ybjG	3.6.1.27	-	I	ko:K19302	ko00550,map00550	ko00000,ko00001,ko01000,ko01011	phosphatidate phosphatase activity
LIMDEABD_01486	1.24e-163	-	-	-	F	ko:K01173	ko04210,map04210	ko00000,ko00001,ko03029	DNA/RNA non-specific endonuclease
LIMDEABD_01487	0.0	lysS	6.1.1.6	-	J	ko:K04567	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Belongs to the class-II aminoacyl-tRNA synthetase family
LIMDEABD_01488	9.61e-168	tpiA	5.3.1.1	-	G	ko:K01803	ko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)
LIMDEABD_01489	3.61e-112	-	3.1.3.97	-	S	ko:K07053	-	ko00000,ko01000	Domain of unknown function
LIMDEABD_01490	6.37e-77	nodN	-	-	I	-	-	-	MaoC like domain
LIMDEABD_01491	5.5e-103	rplQ	-	-	J	ko:K02879	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L17
LIMDEABD_01492	1.14e-230	rpoA	2.7.7.6	-	K	ko:K03040	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LIMDEABD_01493	2.07e-135	rpsD	-	-	J	ko:K02986	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LIMDEABD_01494	5.87e-86	rpsK	-	-	J	ko:K02948	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LIMDEABD_01495	2.07e-80	rpsM	-	-	J	ko:K02952	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LIMDEABD_01496	9.28e-18	rpmJ	-	-	J	ko:K02919	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL36 family
LIMDEABD_01497	2.82e-44	infA	-	-	J	ko:K02518	-	ko00000,ko03012	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LIMDEABD_01498	2.29e-178	map	3.4.11.18	-	E	ko:K01265	-	ko00000,ko01000,ko01002	Metallopeptidase family M24
LIMDEABD_01499	3.84e-312	secY	-	-	U	ko:K03076	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently
LIMDEABD_01500	1.16e-92	rplO	-	-	J	ko:K02876	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	binds to the 23S rRNA
LIMDEABD_01501	1.04e-37	rpmD	-	-	J	ko:K02907	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	ribosomal protein L30
LIMDEABD_01502	1.76e-110	rpsE	-	-	J	ko:K02988	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LIMDEABD_01503	7.66e-71	rplR	-	-	J	ko:K02881	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LIMDEABD_01504	5.94e-127	rplF	-	-	J	ko:K02933	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LIMDEABD_01505	5.8e-83	rpsH	-	-	J	ko:K02994	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LIMDEABD_01506	1.72e-59	rpsN	-	-	J	ko:K02954	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LIMDEABD_01507	6.99e-112	rplE	-	-	J	ko:K02931	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LIMDEABD_01508	1.37e-64	rplX	-	-	J	ko:K02895	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LIMDEABD_01509	2.28e-77	rplN	-	-	J	ko:K02874	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LIMDEABD_01510	8.96e-51	rpsQ	-	-	J	ko:K02961	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LIMDEABD_01511	8.03e-31	rpmC	-	-	J	ko:K02904	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uL29 family
LIMDEABD_01512	2.69e-95	rplP	-	-	J	ko:K02878	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LIMDEABD_01513	4.75e-160	rpsC	-	-	J	ko:K02982	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LIMDEABD_01514	1.6e-79	rplV	-	-	J	ko:K02890	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LIMDEABD_01515	1.49e-58	rpsS	-	-	J	ko:K02965	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LIMDEABD_01516	1.29e-192	rplB	-	-	J	ko:K02886	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LIMDEABD_01517	7.65e-62	rplW	-	-	J	ko:K02892	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome
LIMDEABD_01518	8.72e-140	rplD	-	-	J	ko:K02926	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the polypeptide exit tunnel
LIMDEABD_01519	1.2e-144	rplC	-	-	J	ko:K02906	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LIMDEABD_01520	1.98e-64	rpsJ	-	-	J	ko:K02946	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Involved in the binding of tRNA to the ribosomes
LIMDEABD_01521	0.0	fusA	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LIMDEABD_01522	1.23e-101	rpsG	-	-	J	ko:K02992	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA
LIMDEABD_01523	3.71e-83	rpsL	-	-	J	ko:K02950	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LIMDEABD_01524	3.89e-44	-	-	-	N	-	-	-	domain, Protein
LIMDEABD_01527	0.0	leuS	6.1.1.4	-	J	ko:K01869	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029	Belongs to the class-I aminoacyl-tRNA synthetase family
LIMDEABD_01528	1.35e-160	-	-	-	I	-	-	-	alpha/beta hydrolase fold
LIMDEABD_01529	1.67e-306	lpdA	1.8.1.4	-	C	ko:K00382	ko00010,ko00020,ko00260,ko00280,ko00620,ko00630,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00260,map00280,map00620,map00630,map00640,map01100,map01110,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000,ko04147	Dihydrolipoyl dehydrogenase
LIMDEABD_01530	0.0	-	-	-	M	-	-	-	Peptidase family C69
LIMDEABD_01531	5.72e-201	-	-	-	S	-	-	-	Domain of unknown function (DUF4784)
LIMDEABD_01532	5.33e-137	yggS	-	-	S	ko:K06997	-	ko00000	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LIMDEABD_01533	1.21e-142	proC	1.5.1.2	-	E	ko:K00286	ko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIMDEABD_01534	8.75e-241	mepM_1	-	-	M	-	-	-	Lysin motif
LIMDEABD_01535	1.26e-130	-	-	-	S	-	-	-	Protein of unknown function (DUF3109)
LIMDEABD_01536	3.1e-222	ddl	6.3.2.4	-	F	ko:K01921	ko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502	ko00000,ko00001,ko01000,ko01011	Belongs to the D-alanine--D-alanine ligase family
LIMDEABD_01537	2.26e-162	nadD	2.7.7.18	-	H	ko:K00969	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LIMDEABD_01538	7.32e-124	gmk	2.7.4.8	-	F	ko:K00942	ko00230,ko01100,map00230,map01100	ko00000,ko00001,ko00002,ko01000	Essential for recycling GMP and indirectly, cGMP
LIMDEABD_01539	1.48e-172	-	-	-	S	-	-	-	Domain of unknown function (DUF1732)
LIMDEABD_01540	2.27e-246	serC	2.6.1.52	-	E	ko:K00831	ko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
LIMDEABD_01541	2.91e-194	-	1.1.1.399, 1.1.1.95	-	EH	ko:K00058	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIMDEABD_01542	2.59e-295	-	-	-	S	-	-	-	Protein of unknown function (DUF1015)
LIMDEABD_01543	1.05e-32	oorD	1.2.7.3	-	C	ko:K00176	ko00020,ko00720,ko01100,ko01120,ko01200,map00020,map00720,map01100,map01120,map01200	br01601,ko00000,ko00001,ko00002,ko01000	4Fe-4S binding domain
LIMDEABD_01544	2.4e-256	vorB	1.2.7.11, 1.2.7.3	-	C	ko:K00174	ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000	Pyruvate:ferredoxin oxidoreductase core domain II
LIMDEABD_01545	3.99e-182	vorA	1.2.7.11, 1.2.7.3	-	C	ko:K00175	ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
LIMDEABD_01546	1.09e-124	porG	1.2.7.3	-	C	ko:K00177	ko00020,ko00720,ko01100,ko01120,ko01200,map00020,map00720,map01100,map01120,map01200	br01601,ko00000,ko00001,ko00002,ko01000	Pyruvate ferredoxin/flavodoxin oxidoreductase
LIMDEABD_01547	4.14e-76	-	-	-	-	-	-	-	-
LIMDEABD_01548	7.49e-62	-	-	-	-	-	-	-	-
LIMDEABD_01549	1.45e-162	-	1.11.1.15	-	O	ko:K03386	ko04214,map04214	ko00000,ko00001,ko01000,ko04147	Peroxiredoxin
LIMDEABD_01550	1.67e-206	fmt	2.1.2.9	-	J	ko:K00604	ko00670,ko00970,map00670,map00970	ko00000,ko00001,ko01000	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LIMDEABD_01551	6.47e-285	ribB	3.5.4.25, 4.1.99.12	-	H	ko:K14652	ko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIMDEABD_01552	0.0	-	-	-	S	ko:K07091	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Permease, YjgP YjgQ family
LIMDEABD_01553	2.09e-165	znuB	-	-	P	ko:K02075,ko:K09816	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC 3 transport family
LIMDEABD_01554	5.03e-290	yqeV	2.8.4.5	-	J	ko:K18707	-	ko00000,ko01000,ko03016	Uncharacterized protein family UPF0004
LIMDEABD_01555	8.08e-154	-	-	-	-	-	-	-	-
LIMDEABD_01556	1.76e-315	trkH	-	-	P	ko:K03498	-	ko00000,ko02000	Cation transport protein
LIMDEABD_01557	4.98e-271	-	-	-	-	-	-	-	-
LIMDEABD_01558	6.62e-81	-	-	-	O	-	-	-	NfeD-like C-terminal, partner-binding
LIMDEABD_01559	8.3e-180	-	-	-	S	-	-	-	SigmaW regulon antibacterial
LIMDEABD_01560	8.11e-161	-	3.1.2.12	CE1	S	ko:K01070	ko00680,ko01120,ko01200,map00680,map01120,map01200	ko00000,ko00001,ko01000	esterase
LIMDEABD_01561	6.81e-174	-	-	-	S	-	-	-	CDGSH-type zinc finger. Function unknown.
LIMDEABD_01562	3.41e-31	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_01563	4.43e-245	-	-	-	EGP	-	-	-	Major Facilitator Superfamily
LIMDEABD_01564	1.06e-157	-	-	-	S	-	-	-	Fibrobacter succinogenes major domain (Fib_succ_major)
LIMDEABD_01565	1.01e-274	hom	1.1.1.3	-	E	ko:K00003	ko00260,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00270,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Homoserine dehydrogenase
LIMDEABD_01566	5.15e-230	metXA	2.3.1.31	-	E	ko:K00641	ko00270,ko01100,ko01130,map00270,map01100,map01130	ko00000,ko00001,ko01000	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LIMDEABD_01567	3.79e-290	metY	2.5.1.49	-	E	ko:K01740	ko00270,ko01100,map00270,map01100	ko00000,ko00001,ko01000	O-acetylhomoserine aminocarboxypropyltransferase cysteine synthase
LIMDEABD_01569	2.33e-226	-	-	-	S	-	-	-	COG NOG06028 non supervised orthologous group
LIMDEABD_01570	3.74e-106	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
LIMDEABD_01571	2.14e-285	-	-	-	M	-	-	-	Efflux transporter, outer membrane factor
LIMDEABD_01572	0.0	-	-	-	V	ko:K03296	-	ko00000	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIMDEABD_01573	0.0	pckA	4.1.1.49	-	H	ko:K01610	ko00010,ko00020,ko00620,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00710,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LIMDEABD_01574	2.37e-222	hemN	-	-	H	-	-	-	Involved in the biosynthesis of porphyrin-containing compound
LIMDEABD_01575	0.0	glgP	2.4.1.1, 2.4.1.11, 2.4.1.8	GH65,GT3,GT35	G	ko:K00688,ko:K00691,ko:K16153	ko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931	ko00000,ko00001,ko01000,ko01003	Protein of unknown function (DUF3417)
LIMDEABD_01576	0.0	-	-	-	G	-	-	-	glycogen debranching enzyme, archaeal type
LIMDEABD_01577	4.82e-309	-	-	-	G	-	-	-	Glycosyl transferase 4-like domain
LIMDEABD_01578	3.64e-290	amyA	3.2.1.1	GH57	G	ko:K07405	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 57 family
LIMDEABD_01579	3.42e-31	-	-	-	F	-	-	-	Belongs to the D-alanine--D-alanine ligase family
LIMDEABD_01580	3.92e-213	-	-	-	HJ	-	-	-	Belongs to the D-alanine--D-alanine ligase family
LIMDEABD_01581	1.82e-23	-	-	-	K	-	-	-	Peptidase_C39 like family
LIMDEABD_01582	7.06e-71	-	-	-	K	-	-	-	HxlR-like helix-turn-helix
LIMDEABD_01583	2.67e-114	-	3.5.1.124	-	S	ko:K05520	-	ko00000,ko01000,ko01002	DJ-1 PfpI family protein
LIMDEABD_01584	7.49e-207	-	-	-	K	-	-	-	transcriptional regulator (AraC family)
LIMDEABD_01585	2.94e-181	-	-	-	I	-	-	-	Diacylglycerol kinase catalytic domain (presumed)
LIMDEABD_01586	6.82e-194	apbE	2.7.1.180	-	H	ko:K03734	-	ko00000,ko01000	Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein
LIMDEABD_01587	4.43e-56	rpsO	-	-	J	ko:K02956	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LIMDEABD_01588	0.0	pnp	2.7.7.8	-	J	ko:K00962	ko00230,ko00240,ko03018,map00230,map00240,map03018	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019	Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
LIMDEABD_01589	0.0	-	-	-	M	-	-	-	Tetratricopeptide repeat protein
LIMDEABD_01590	3.93e-192	deoC	4.1.2.4	-	F	ko:K01619	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LIMDEABD_01592	0.0	ctp	3.4.21.102	-	M	ko:K03797	-	ko00000,ko01000,ko01002	Belongs to the peptidase S41A family
LIMDEABD_01593	9.87e-211	ydiY	-	-	-	ko:K07283	-	ko00000	-
LIMDEABD_01594	3.79e-189	nfo	3.1.21.2	-	L	ko:K01151	ko03410,map03410	ko00000,ko00001,ko01000,ko03400	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LIMDEABD_01595	6.62e-262	argD	2.6.1.11, 2.6.1.17	-	E	ko:K00821	ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LIMDEABD_01596	9.38e-132	trmH	2.1.1.34	-	J	ko:K00556	-	ko00000,ko01000,ko03016	Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA
LIMDEABD_01597	9.75e-195	rsgA	3.1.3.100	-	S	ko:K06949	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko01000,ko03009	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
LIMDEABD_01598	1.5e-88	cvpA	-	-	S	ko:K03558	-	ko00000	Colicin V production protein
LIMDEABD_01599	4.74e-34	-	-	-	K	-	-	-	Helix-turn-helix domain
LIMDEABD_01601	0.0	-	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 2 family
LIMDEABD_01602	2.68e-121	-	-	-	C	-	-	-	WbqC-like protein family
LIMDEABD_01603	0.0	ispG	1.17.7.1, 1.17.7.3	-	I	ko:K03526	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
LIMDEABD_01604	1.6e-45	-	-	-	-	-	-	-	-
LIMDEABD_01605	0.0	recG	3.6.4.12	-	L	ko:K03655	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LIMDEABD_01606	2.03e-180	-	-	-	S	-	-	-	Protein of unknown function (DUF3108)
LIMDEABD_01607	6.96e-87	-	-	-	S	ko:K19353	ko00540,map00540	ko00000,ko00001,ko01000,ko01005	Arylsulfatase
LIMDEABD_01608	1.37e-185	-	-	-	D	-	-	-	nuclear chromosome segregation
LIMDEABD_01609	0.0	fumB	4.2.1.2	-	C	ko:K01676	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Catalyzes the reversible hydration of fumarate to (S)- malate
LIMDEABD_01610	3.16e-234	fba	4.1.2.13	-	G	ko:K01624	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Fructose-1,6-bisphosphate aldolase, class II
LIMDEABD_01611	8.64e-197	-	-	-	S	ko:K06889	-	ko00000	of the alpha beta superfamily
LIMDEABD_01612	2.48e-227	ltd	-	-	GM	-	-	-	NAD dependent epimerase dehydratase family
LIMDEABD_01615	6.53e-119	-	-	-	K	ko:K02529	-	ko00000,ko03000	Periplasmic binding protein-like domain
LIMDEABD_01616	1.23e-77	rbsK	2.7.1.15	-	H	ko:K00852	ko00030,map00030	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIMDEABD_01617	1.89e-200	-	-	-	G	ko:K05340	-	ko00000,ko02000	COG NOG04879 non supervised orthologous group
LIMDEABD_01618	1.27e-102	-	-	-	F	-	-	-	Inosine-uridine preferring nucleoside hydrolase
LIMDEABD_01619	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_01620	3.45e-219	-	-	-	S	ko:K21572	-	ko00000,ko02000	RagB SusD family protein
LIMDEABD_01621	1.19e-28	-	-	-	S	-	-	-	Putative binding domain, N-terminal
LIMDEABD_01622	8.98e-48	-	-	-	N	-	-	-	domain, Protein
LIMDEABD_01624	1.48e-138	-	-	-	T	-	-	-	Lipopolysaccharide kinase (Kdo/WaaP) family
LIMDEABD_01625	1.34e-177	pheA	4.2.1.51	-	E	ko:K04518	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Prephenate dehydratase
LIMDEABD_01626	4.49e-238	pheB	5.4.99.5	-	E	ko:K04516	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Chorismate mutase type II
LIMDEABD_01627	1.4e-138	srrA	-	-	T	ko:K07657,ko:K07658	ko02020,map02020	ko00000,ko00001,ko00002,ko02022	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
LIMDEABD_01628	4.49e-290	-	2.7.13.3	-	T	ko:K02484,ko:K07636	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	ATPase histidine kinase DNA gyrase B HSP90 domain protein
LIMDEABD_01629	0.0	-	-	-	U	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_01630	3.97e-73	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
LIMDEABD_01631	1.06e-35	-	-	-	S	-	-	-	COG NOG31508 non supervised orthologous group
LIMDEABD_01632	0.0	pflB	2.3.1.54	-	C	ko:K00656	ko00620,ko00640,ko00650,ko01100,ko01120,map00620,map00640,map00650,map01100,map01120	ko00000,ko00001,ko01000	Psort location Cytoplasmic, score 9.97
LIMDEABD_01633	4.35e-161	pflA	1.97.1.4	-	C	ko:K04069	-	ko00000,ko01000	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LIMDEABD_01634	7e-250	-	-	-	S	-	-	-	Acyltransferase family
LIMDEABD_01635	1.21e-291	agcS	-	-	U	ko:K03310	-	ko00000	Sodium:alanine symporter family
LIMDEABD_01636	0.0	actP	3.6.3.4, 3.6.3.54	-	P	ko:K01533,ko:K17686	ko01524,ko04016,map01524,map04016	ko00000,ko00001,ko01000	Copper-exporting ATPase
LIMDEABD_01637	4.11e-88	-	-	-	K	-	-	-	Transcriptional regulator, AraC family
LIMDEABD_01639	0.0	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 43 family
LIMDEABD_01640	0.0	cas9	-	-	L	ko:K09952	-	ko00000,ko01000,ko02048	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
LIMDEABD_01641	2.8e-170	cas1	-	-	L	ko:K15342	-	ko00000,ko02048,ko03400	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
LIMDEABD_01642	2.45e-211	-	-	-	E	-	-	-	N-terminus of Esterase_SGNH_hydro-type
LIMDEABD_01643	3.51e-227	glk	2.7.1.2	-	GK	ko:K00845	ko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000	Glucokinase
LIMDEABD_01644	3.3e-199	idsA	2.5.1.1, 2.5.1.10, 2.5.1.29	-	H	ko:K13789	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000,ko01006	Belongs to the FPP GGPP synthase family
LIMDEABD_01645	3.08e-265	prtC	-	-	O	ko:K08303	ko05120,map05120	ko00000,ko00001,ko01000,ko01002	Peptidase family U32
LIMDEABD_01646	2.29e-169	-	-	-	S	-	-	-	Domain of unknown function (DUF5009)
LIMDEABD_01648	0.0	-	-	-	EU	-	-	-	Peptidase, S9A B C family, catalytic domain protein
LIMDEABD_01649	5.86e-291	-	-	-	P	ko:K08169	-	ko00000,ko02000	Major Facilitator
LIMDEABD_01650	0.0	pepP	3.4.11.9	-	E	ko:K01262	-	ko00000,ko01000,ko01002	Aminopeptidase P, N-terminal domain
LIMDEABD_01652	1.51e-132	-	-	-	E	-	-	-	COG2755 Lysophospholipase L1 and related
LIMDEABD_01653	0.0	fusA2	-	-	J	ko:K02355	-	ko00000,ko03012,ko03029	Elongation factor G, domain IV
LIMDEABD_01654	0.0	-	-	-	U	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_01655	2.98e-123	-	-	-	S	-	-	-	Domain of unknown function (DUF4924)
LIMDEABD_01656	5.82e-103	-	-	-	T	-	-	-	COG COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases
LIMDEABD_01657	1.46e-101	paiA	-	-	K	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01658	3.81e-28	rpmH	-	-	J	ko:K02914	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the bacterial ribosomal protein bL34 family
LIMDEABD_01659	1.74e-295	murA	2.5.1.7	-	M	ko:K00790	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LIMDEABD_01660	0.0	-	-	-	O	-	-	-	Domain of unknown function (DUF5117)
LIMDEABD_01661	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_01662	1.05e-241	-	1.14.14.47	-	GM	ko:K00491,ko:K21572	ko00220,ko00330,ko01100,ko01110,map00220,map00330,map01100,map01110	ko00000,ko00001,ko01000,ko02000	epimerase
LIMDEABD_01663	1.4e-143	-	-	-	S	-	-	-	Domain of unknown function (DUF4843)
LIMDEABD_01664	7.38e-264	-	-	-	-	-	-	-	-
LIMDEABD_01665	7.06e-128	tdk	2.7.1.21	-	F	ko:K00857	ko00240,ko00983,ko01100,map00240,map00983,map01100	ko00000,ko00001,ko01000	thymidine kinase
LIMDEABD_01666	3.89e-147	-	-	-	-	-	-	-	-
LIMDEABD_01667	8.55e-317	cstA	-	-	T	ko:K06200	-	ko00000	5TM C-terminal transporter carbon starvation CstA
LIMDEABD_01670	1.45e-179	-	-	-	S	-	-	-	non supervised orthologous group
LIMDEABD_01671	1.58e-220	-	-	-	S	-	-	-	COG NOG25284 non supervised orthologous group
LIMDEABD_01672	0.0	-	-	-	H	ko:K02014	-	ko00000,ko02000	Outer membrane cobalamin receptor protein
LIMDEABD_01673	1.75e-314	-	-	-	T	-	-	-	ATPase histidine kinase DNA gyrase B HSP90 domain protein
LIMDEABD_01674	1.72e-178	-	4.1.1.35, 5.1.3.7	-	GM	ko:K02473,ko:K08678	ko00520,ko01100,map00520,map01100	ko00000,ko00001,ko00002,ko01000	GDP-mannose 4,6 dehydratase
LIMDEABD_01675	3.18e-249	-	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	Alpha galactosidase A
LIMDEABD_01676	7.56e-182	-	-	-	S	-	-	-	Domain of unknown function (DUF5009)
LIMDEABD_01678	1.29e-196	-	-	-	P	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_01679	1.93e-314	-	-	-	P	-	-	-	Carboxypeptidase regulatory-like domain
LIMDEABD_01680	2.66e-24	-	-	-	PT	-	-	-	Domain of unknown function (DUF4974)
LIMDEABD_01681	8.98e-20	-	-	-	K	-	-	-	Sigma-70 region 2
LIMDEABD_01682	8.69e-26	-	-	-	S	-	-	-	PKD-like family
LIMDEABD_01684	1.39e-108	-	-	-	S	ko:K21572	-	ko00000,ko02000	Starch-binding associating with outer membrane
LIMDEABD_01685	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_01686	5.63e-43	-	-	-	PT	-	-	-	COG3712 Fe2 -dicitrate sensor, membrane component
LIMDEABD_01687	1.1e-11	-	-	-	K	ko:K03088	-	ko00000,ko03021	DNA-templated transcription, initiation
LIMDEABD_01688	6.15e-139	hisI	3.5.4.19, 3.6.1.31	-	E	ko:K11755	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Phosphoribosyl-AMP cyclohydrolase
LIMDEABD_01689	1.59e-165	hisF	-	-	E	ko:K02500	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit
LIMDEABD_01690	8.33e-148	hisA	5.3.1.16	-	E	ko:K01814	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Histidine biosynthesis protein
LIMDEABD_01691	2.35e-114	hisH	-	-	E	ko:K02501	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LIMDEABD_01692	2.99e-251	hisB	3.1.3.15, 4.2.1.19	-	E	ko:K01089,ko:K01693	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	belongs to the imidazoleglycerol-phosphate dehydratase family
LIMDEABD_01693	3.69e-218	hisC	2.6.1.9	-	E	ko:K00817	ko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase class I and II
LIMDEABD_01694	8.48e-261	hisD	1.1.1.23	-	E	ko:K00013	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LIMDEABD_01695	4.38e-184	hisG	2.4.2.17	-	E	ko:K00765	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	ATP phosphoribosyltransferase
LIMDEABD_01696	7.97e-104	-	-	-	K	-	-	-	Cupin domain protein
LIMDEABD_01697	0.0	acsA	6.2.1.1, 6.2.1.32	-	I	ko:K01895,ko:K08295	ko00010,ko00620,ko00627,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00627,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200	ko00000,ko00001,ko00002,ko01000,ko01004	AMP-binding enzyme
LIMDEABD_01698	1.02e-53	-	-	-	K	ko:K03088	-	ko00000,ko03021	RNA polymerase sigma-70 factor
LIMDEABD_01699	3.68e-58	-	-	-	PT	-	-	-	COGs COG3712 Fe2 -dicitrate sensor membrane component
LIMDEABD_01700	1.56e-315	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_01701	1.51e-153	-	-	-	F	ko:K21572	-	ko00000,ko02000	PFAM RagB SusD
LIMDEABD_01702	9.49e-82	-	-	-	S	-	-	-	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LIMDEABD_01704	1.62e-71	-	-	-	M	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01706	3.26e-62	-	-	-	S	-	-	-	KAP family P-loop domain
LIMDEABD_01708	7.86e-88	vsr	-	-	L	ko:K07458	-	ko00000,ko01000,ko03400	May nick specific sequences that contain T G mispairs resulting from m5C-deamination
LIMDEABD_01709	9.82e-280	-	-	-	-	-	-	-	-
LIMDEABD_01710	8.97e-54	-	-	-	-	-	-	-	-
LIMDEABD_01711	1.76e-178	-	-	-	T	-	-	-	COG NOG25714 non supervised orthologous group
LIMDEABD_01712	7.84e-75	-	-	-	K	-	-	-	COG NOG37763 non supervised orthologous group
LIMDEABD_01713	2.96e-75	-	-	-	S	-	-	-	COG NOG31621 non supervised orthologous group
LIMDEABD_01714	3.79e-252	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_01715	1.44e-198	-	-	-	L	-	-	-	DNA binding domain, excisionase family
LIMDEABD_01716	2.25e-266	mnmE	-	-	S	ko:K03650	-	ko00000,ko01000,ko03016	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LIMDEABD_01717	2.18e-271	mltD	-	-	M	ko:K08307	-	ko00000,ko01000,ko01011	Transglycosylase SLT domain
LIMDEABD_01718	2.08e-249	-	-	-	-	-	-	-	-
LIMDEABD_01719	6.95e-184	parB	-	-	K	ko:K03497	-	ko00000,ko03000,ko03036,ko04812	Belongs to the ParB family
LIMDEABD_01720	3.73e-169	soj	-	-	D	ko:K03496	-	ko00000,ko03036,ko04812	CobQ CobB MinD ParA nucleotide binding domain
LIMDEABD_01721	4.39e-167	sagE	-	-	S	ko:K07052	-	ko00000	CAAX amino terminal protease family
LIMDEABD_01722	9.84e-173	-	-	-	O	-	-	-	COG NOG23400 non supervised orthologous group
LIMDEABD_01723	2.07e-300	surA	5.2.1.8	-	M	ko:K03771	-	ko00000,ko01000,ko03110	PPIC-type PPIASE domain
LIMDEABD_01724	0.0	lptD	-	-	M	-	-	-	OstA-like protein
LIMDEABD_01725	1.68e-266	araJ	-	-	EGP	ko:K08156	-	ko00000,ko02000	Major Facilitator Superfamily
LIMDEABD_01726	2.53e-107	-	-	-	I	-	-	-	NUDIX domain
LIMDEABD_01727	5.94e-260	ybdG_2	-	-	M	ko:K16053	-	ko00000,ko02000	Mechanosensitive ion channel
LIMDEABD_01728	0.0	-	-	-	P	ko:K07085	-	ko00000	TrkA C-terminal domain protein
LIMDEABD_01729	4.19e-284	-	-	-	C	-	-	-	Acetyl-CoA hydrolase transferase
LIMDEABD_01730	2.82e-271	alaC	-	-	E	-	-	-	Aminotransferase, class I
LIMDEABD_01731	1.67e-101	iorB	1.2.7.8	-	C	ko:K00180	-	br01601,ko00000,ko01000	Pyruvate ferredoxin/flavodoxin oxidoreductase
LIMDEABD_01732	0.0	iorA	1.2.7.8	-	C	ko:K00179	-	br01601,ko00000,ko01000	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
LIMDEABD_01733	1.84e-147	-	-	-	K	ko:K05799	-	ko00000,ko03000	FCD
LIMDEABD_01734	2.97e-58	-	-	-	K	-	-	-	DNA-binding transcription factor activity
LIMDEABD_01735	2.18e-34	-	-	-	C	-	-	-	4Fe-4S binding domain
LIMDEABD_01736	5.75e-98	-	-	-	O	-	-	-	Belongs to the thioredoxin family
LIMDEABD_01737	4.47e-271	tolC	-	-	MU	-	-	-	Outer membrane efflux protein
LIMDEABD_01738	0.0	bepE_4	-	-	V	ko:K03296,ko:K18138	ko01501,ko01503,map01501,map01503	ko00000,ko00001,ko00002,ko01504,ko02000	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIMDEABD_01739	6.78e-208	-	-	-	M	ko:K03585	ko01501,ko01503,map01501,map01503	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	Biotin-lipoyl like
LIMDEABD_01741	1.97e-85	-	-	-	S	-	-	-	Domain of unknown function (DUF4263)
LIMDEABD_01742	2.2e-07	-	-	-	-	-	-	-	-
LIMDEABD_01743	1.61e-158	-	-	-	K	-	-	-	DNA-templated transcription, initiation
LIMDEABD_01744	5.37e-115	-	-	-	K	ko:K03088	-	ko00000,ko03021	Belongs to the sigma-70 factor family. ECF subfamily
LIMDEABD_01746	1.76e-232	ruvB	3.6.4.12	-	L	ko:K03551	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
LIMDEABD_01747	2.6e-280	maeB	1.1.1.38, 1.1.1.40	-	C	ko:K00027,ko:K00029	ko00620,ko00710,ko01100,ko01120,ko01200,ko02020,map00620,map00710,map01100,map01120,map01200,map02020	ko00000,ko00001,ko00002,ko01000	Psort location Cytoplasmic, score
LIMDEABD_01748	3.09e-209	aroB	4.2.3.4	-	E	ko:K01735	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LIMDEABD_01749	0.0	typA	-	-	T	ko:K06207	-	ko00000	GTP-binding protein TypA
LIMDEABD_01750	1.34e-23	-	-	-	O	ko:K03668	-	ko00000	response to heat
LIMDEABD_01751	2.04e-68	-	-	-	S	ko:K09790	-	ko00000	Protein of unknown function (DUF454)
LIMDEABD_01752	4.75e-96	rpiB	5.3.1.6	-	G	ko:K01808	ko00030,ko00051,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00051,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Ribose/Galactose Isomerase
LIMDEABD_01753	2.46e-163	ispE	2.7.1.148	-	I	ko:K00919	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
LIMDEABD_01754	3.78e-191	-	-	-	E	-	-	-	GSCFA family
LIMDEABD_01755	0.0	pafA	-	-	S	-	-	-	Type I phosphodiesterase nucleotide pyrophosphatase
LIMDEABD_01756	6.59e-81	sufE	-	-	S	ko:K02426	-	ko00000	Fe-S metabolism associated domain
LIMDEABD_01757	7.26e-67	yitW	-	-	S	-	-	-	FeS assembly SUF system protein
LIMDEABD_01758	2.36e-189	-	-	-	S	-	-	-	Protein of unknown function (DUF2851)
LIMDEABD_01759	0.0	secA	-	-	U	ko:K03070	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane
LIMDEABD_01760	9.65e-95	comEB	3.5.4.12	-	F	ko:K01493	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko00002,ko01000,ko02044	Cytidine and deoxycytidylate deaminase zinc-binding region
LIMDEABD_01762	1.15e-139	-	-	-	S	-	-	-	Oxidoreductase, short chain dehydrogenase reductase family
LIMDEABD_01763	5.06e-253	-	-	-	T	-	-	-	Histidine kinase
LIMDEABD_01764	0.0	-	-	-	O	-	-	-	Domain of unknown function (DUF5117)
LIMDEABD_01765	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_01766	5.02e-186	-	-	-	S	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_01767	5.91e-87	-	-	-	K	-	-	-	LytTr DNA-binding domain
LIMDEABD_01768	2.15e-89	ssb	-	-	L	ko:K03111	ko03030,ko03430,ko03440,map03030,map03430,map03440	ko00000,ko00001,ko03029,ko03032,ko03400	Single-stranded DNA-binding protein
LIMDEABD_01769	3.23e-181	xapA	2.4.2.1	-	F	ko:K03783	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
LIMDEABD_01770	1.07e-239	lpxK	2.7.1.130	-	M	ko:K00912	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01005	Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA)
LIMDEABD_01771	1.49e-277	-	-	-	M	-	-	-	Peptidase family M23
LIMDEABD_01772	7.27e-132	ispD	2.7.7.60	-	I	ko:K00991	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP)
LIMDEABD_01773	2.55e-110	-	-	-	S	-	-	-	Bacterial PH domain
LIMDEABD_01774	1.17e-35	rubR	-	-	C	-	-	-	Rubredoxin
LIMDEABD_01775	2.58e-36	-	-	-	G	-	-	-	Glycosyl hydrolase family 92
LIMDEABD_01776	3.63e-75	ntpB	-	-	C	ko:K02118	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002	ATP synthase alpha beta family, nucleotide-binding domain
LIMDEABD_01777	2.7e-131	-	-	-	C	ko:K02120	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002	ATP synthase subunit D
LIMDEABD_01778	0.0	-	-	-	C	ko:K02123	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002	Belongs to the V-ATPase 116 kDa subunit family
LIMDEABD_01779	7.94e-90	-	-	-	C	ko:K02124	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002	ATP synthase subunit C
LIMDEABD_01780	0.0	rnr	-	-	J	ko:K12573,ko:K12585	ko03018,map03018	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019	3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
LIMDEABD_01781	2.06e-242	amaA	-	-	S	ko:K01436	-	ko00000,ko01000,ko01002	Peptidase dimerisation domain
LIMDEABD_01782	7.65e-223	metF	1.5.1.20	-	E	ko:K00297	ko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523	ko00000,ko00001,ko00002,ko01000	Methylenetetrahydrofolate reductase
LIMDEABD_01783	0.0	metH	2.1.1.13	-	E	ko:K00548	ko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	B12 binding domain
LIMDEABD_01784	1.26e-150	-	2.3.2.5	-	M	ko:K00683	-	ko00000,ko01000	Glutamine cyclotransferase
LIMDEABD_01785	2.01e-287	tig	-	-	O	ko:K03545	-	ko00000	Bacterial trigger factor protein (TF)
LIMDEABD_01786	7.38e-148	clpP	3.4.21.92	-	OU	ko:K01358	ko04112,ko04212,map04112,map04212	ko00000,ko00001,ko01000,ko01002	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins
LIMDEABD_01787	1.44e-293	clpX	-	-	O	ko:K03544	ko04112,map04112	ko00000,ko00001,ko03110	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LIMDEABD_01788	0.0	tkt	2.2.1.1	-	H	ko:K00615	ko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the transketolase family
LIMDEABD_01789	7.12e-289	metK	2.5.1.6	-	H	ko:K00789	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LIMDEABD_01790	0.0	htrA	-	-	M	-	-	-	Trypsin
LIMDEABD_01791	2.19e-190	rpoD	-	-	K	ko:K03086	-	ko00000,ko03021	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LIMDEABD_01793	9.8e-26	-	-	-	K	-	-	-	Transcriptional regulator, GntR family
LIMDEABD_01795	2.9e-65	cbiO	-	-	V	ko:K01990	-	ko00000,ko00002,ko02000	ATPases associated with a variety of cellular activities
LIMDEABD_01796	1.06e-155	ung	3.2.2.27	-	L	ko:K03648	ko03410,ko05340,map03410,map05340	ko00000,ko00001,ko01000,ko03400	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LIMDEABD_01797	1.64e-190	-	-	-	KT	-	-	-	BlaR1 peptidase M56
LIMDEABD_01798	5.09e-71	-	-	-	K	-	-	-	Penicillinase repressor
LIMDEABD_01799	1.24e-157	trmB	2.1.1.33	-	J	ko:K03439	-	ko00000,ko01000,ko03016	Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
LIMDEABD_01800	6.98e-61	-	-	-	-	-	-	-	-
LIMDEABD_01801	1.12e-247	yaaT	-	-	S	-	-	-	PSP1 C-terminal conserved region
LIMDEABD_01802	1.55e-306	norM	-	-	V	ko:K03327	-	ko00000,ko02000	Polysaccharide biosynthesis C-terminal domain
LIMDEABD_01804	3.31e-245	-	-	-	N	-	-	-	Lipid A 3-O-deacylase (PagL)
LIMDEABD_01805	7.79e-234	-	3.5.1.24	-	M	ko:K01442	ko00120,ko00121,ko01100,map00120,map00121,map01100	ko00000,ko00001,ko01000	Linear amide C-N hydrolases, choloylglycine hydrolase family
LIMDEABD_01806	5.61e-139	-	-	-	S	-	-	-	phosphatase family
LIMDEABD_01807	3.86e-129	engB	-	-	D	ko:K03978	-	ko00000,ko03036	Necessary for normal cell division and for the maintenance of normal septation
LIMDEABD_01808	1.31e-216	prs	2.7.6.1	-	F	ko:K00948	ko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LIMDEABD_01809	4.17e-169	-	-	-	S	-	-	-	Belongs to the short-chain dehydrogenases reductases (SDR) family
LIMDEABD_01810	1.87e-166	lipB	3.1.4.55	-	S	ko:K06167	ko00440,map00440	ko00000,ko00001,ko01000	Metallo-beta-lactamase superfamily
LIMDEABD_01811	3.93e-60	-	-	-	E	-	-	-	COG NOG19114 non supervised orthologous group
LIMDEABD_01812	0.0	czcA	-	-	V	ko:K03296	-	ko00000	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIMDEABD_01813	1.52e-191	-	-	-	M	ko:K03585	ko01501,ko01503,map01501,map01503	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIMDEABD_01814	1.38e-231	-	-	-	MU	-	-	-	outer membrane efflux protein
LIMDEABD_01815	1.29e-101	-	-	-	K	-	-	-	Bacterial regulatory proteins, tetR family
LIMDEABD_01816	2.21e-234	-	-	-	P	ko:K03305	-	ko00000	POT family
LIMDEABD_01817	0.0	glgB	2.4.1.18	CBM48,GH13	G	ko:K00700	ko00500,ko01100,ko01110,map00500,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko04147	1,4-alpha-glucan branching enzyme
LIMDEABD_01818	7.28e-43	-	-	-	S	-	-	-	Psort location CytoplasmicMembrane, score
LIMDEABD_01819	5.05e-104	tpx	1.11.1.15	-	O	ko:K11065	-	ko00000,ko01000	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
LIMDEABD_01820	1.98e-261	mtaD	3.5.4.28, 3.5.4.31	-	F	ko:K12960	ko00270,ko01100,map00270,map01100	ko00000,ko00001,ko01000	Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine
LIMDEABD_01821	9.68e-69	-	-	-	S	-	-	-	Protein of unknown function (DUF1573)
LIMDEABD_01822	4.3e-140	-	-	-	M	ko:K03646,ko:K03832	-	ko00000,ko02000	energy transducer activity
LIMDEABD_01823	9.89e-81	-	-	-	U	ko:K03559	-	ko00000,ko02000	Transport energizing protein, ExbD TolR family
LIMDEABD_01824	7.41e-151	exbB	-	-	U	ko:K03561	-	ko00000,ko02000	MotA TolQ ExbB proton channel family
LIMDEABD_01825	0.0	-	-	-	S	-	-	-	TamB, inner membrane protein subunit of TAM complex
LIMDEABD_01826	5.83e-229	tsaD	2.3.1.234	-	O	ko:K01409	-	ko00000,ko01000,ko03016	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LIMDEABD_01828	1.65e-225	-	-	-	S	-	-	-	2-nitropropane dioxygenase
LIMDEABD_01829	1.43e-213	-	-	-	S	-	-	-	domain protein
LIMDEABD_01830	0.0	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_01831	8.77e-137	-	-	-	K	-	-	-	Psort location Cytoplasmic, score
LIMDEABD_01832	6.87e-239	-	-	-	S	-	-	-	hmm pf08843
LIMDEABD_01834	4.3e-68	-	-	-	K	-	-	-	Helix-turn-helix domain
LIMDEABD_01835	3.57e-302	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01836	1.48e-223	-	-	-	L	-	-	-	Toprim-like
LIMDEABD_01837	4.93e-14	-	-	-	S	-	-	-	Bacterial mobilisation protein (MobC)
LIMDEABD_01838	6.27e-248	-	-	-	U	-	-	-	Relaxase mobilization nuclease domain protein
LIMDEABD_01839	5.1e-163	-	-	-	-	-	-	-	-
LIMDEABD_01840	0.0	susB	3.2.1.20, 3.2.1.3	GH31,GH97	G	ko:K01187,ko:K21574	ko00052,ko00500,ko01100,map00052,map00500,map01100	ko00000,ko00001,ko01000	alpha-glucosidase
LIMDEABD_01841	0.0	-	3.2.1.135	GH13	G	ko:K21575	-	ko00000,ko01000	Cyclomaltodextrinase, N-terminal
LIMDEABD_01842	0.0	amyB	-	-	G	-	-	-	Alpha amylase, catalytic domain
LIMDEABD_01843	0.0	-	3.2.1.1, 3.2.1.133, 3.2.1.135, 3.2.1.54	GH13	G	ko:K01176,ko:K01208	ko00500,ko01100,ko04973,map00500,map01100,map04973	ko00000,ko00001,ko01000	Alpha-amylase domain
LIMDEABD_01844	0.0	-	-	-	S	ko:K21571	-	ko00000	Outer membrane protein SusF_SusE
LIMDEABD_01845	0.0	-	-	-	M	ko:K21572	-	ko00000,ko02000	Pfam:SusD
LIMDEABD_01846	0.0	-	-	-	P	ko:K21573	-	ko00000,ko02000	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_01847	2.87e-316	-	-	-	G	ko:K16211	-	ko00000,ko02000	MFS/sugar transport protein
LIMDEABD_01848	8.13e-315	-	-	-	T	-	-	-	Histidine kinase
LIMDEABD_01849	7.15e-178	-	-	-	K	-	-	-	LytTr DNA-binding domain
LIMDEABD_01850	0.0	malQ	2.4.1.25	GH77	G	ko:K00705	ko00500,ko01100,map00500,map01100	ko00000,ko00001,ko01000	Starch binding domain
LIMDEABD_01851	2.94e-83	-	-	-	L	-	-	-	Transposase
LIMDEABD_01852	4.94e-75	-	-	-	L	-	-	-	Transposase
LIMDEABD_01853	2e-208	gap	1.2.1.12	-	G	ko:K00134	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Belongs to the glyceraldehyde-3-phosphate dehydrogenase family
LIMDEABD_01854	3.78e-169	metN	-	-	Q	ko:K02065	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	ABC transporter
LIMDEABD_01855	3.98e-153	mlaE	-	-	Q	ko:K02066	ko02010,map02010	ko00000,ko00001,ko00002,ko02000	Permease MlaE
LIMDEABD_01857	3.79e-307	purB	4.3.2.2	-	F	ko:K01756	ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Adenylosuccinate lyase C-terminal
LIMDEABD_01858	7.1e-258	Dcc	-	-	-	-	-	-	-
LIMDEABD_01859	1.34e-77	-	-	-	S	-	-	-	S1 P1 nuclease
LIMDEABD_01861	4.27e-316	-	-	-	E	ko:K20265	ko02024,map02024	ko00000,ko00001,ko02000	Amino acid permease
LIMDEABD_01862	0.0	-	-	-	P	-	-	-	TonB-dependent receptor
LIMDEABD_01863	1.1e-158	-	-	-	S	ko:K03453	-	ko00000	Bile acid
LIMDEABD_01864	7.43e-65	-	-	-	K	ko:K03088	-	ko00000,ko03021	RNA polymerase sigma-70 factor, Bacteroides expansion family 1
LIMDEABD_01865	1.42e-17	-	-	-	PT	-	-	-	FecR protein
LIMDEABD_01866	6.16e-287	-	-	-	H	-	-	-	TonB-dependent Receptor Plug Domain
LIMDEABD_01867	7.91e-144	-	-	-	P	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_01869	4.94e-270	-	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	Alpha galactosidase A
LIMDEABD_01872	1.58e-160	-	-	-	K	-	-	-	Pfam Fic DOC family
LIMDEABD_01873	4.02e-304	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_01874	0.0	-	-	-	S	-	-	-	Plasmid recombination enzyme
LIMDEABD_01878	4.49e-214	-	-	-	M	ko:K03585	ko01501,ko01503,map01501,map01503	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIMDEABD_01879	6.58e-174	thiD	2.7.1.49, 2.7.4.7	-	K	ko:K00941	ko00730,ko01100,map00730,map01100	ko00000,ko00001,ko00002,ko01000	Bacterial regulatory helix-turn-helix proteins, AraC family
LIMDEABD_01880	3.61e-244	fbaB	4.1.2.13	-	G	ko:K11645	ko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230	ko00000,ko00001,ko00002,ko01000	COG COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes
LIMDEABD_01881	2.73e-220	ldhA	1.1.1.28	-	CH	ko:K03778	ko00620,ko01120,map00620,map01120	ko00000,ko00001,ko01000	D-isomer specific 2-hydroxyacid dehydrogenase
LIMDEABD_01882	1.82e-172	gpmA	5.4.2.11	-	G	ko:K01834	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230	ko00000,ko00001,ko00002,ko01000,ko04131,ko04147	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LIMDEABD_01883	3.08e-37	-	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Cupin 2, conserved barrel domain protein
LIMDEABD_01884	1.59e-171	-	4.1.1.44	-	S	ko:K01607	ko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220	ko00000,ko00001,ko01000	Cupin 2, conserved barrel domain protein
LIMDEABD_01885	6.25e-148	yvgN	-	-	S	-	-	-	aldo keto reductase family
LIMDEABD_01886	3.6e-265	yccM	-	-	C	-	-	-	4Fe-4S binding domain
LIMDEABD_01887	7.39e-306	-	-	-	S	ko:K07079	-	ko00000	Aldo/keto reductase family
LIMDEABD_01888	3.38e-249	-	-	-	V	-	-	-	Na driven multidrug efflux pump
LIMDEABD_01889	8.08e-119	-	-	-	T	-	-	-	cyclic nucleotide-binding
LIMDEABD_01890	1.21e-292	-	-	-	M	ko:K18139,ko:K18300	ko01501,ko02024,map01501,map02024	ko00000,ko00001,ko00002,ko01504,ko02000	Efflux transporter, outer membrane factor lipoprotein, NodT family
LIMDEABD_01891	0.0	-	-	-	V	-	-	-	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIMDEABD_01892	3.32e-255	-	-	-	M	ko:K03585	ko01501,ko01503,map01501,map01503	ko00000,ko00001,ko00002,ko01504,ko02000,ko03036	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIMDEABD_01893	2.2e-37	-	-	-	S	-	-	-	ErfK YbiS YcfS YnhG
LIMDEABD_01894	0.0	covS	-	-	T	-	-	-	ATPase histidine kinase DNA gyrase B HSP90 domain protein
LIMDEABD_01895	4.62e-205	kdpD	2.7.13.3	-	T	ko:K07646	ko02020,map02020	ko00000,ko00001,ko00002,ko01000,ko01001,ko02022	Histidine kinase
LIMDEABD_01896	8.45e-137	-	-	-	S	-	-	-	non supervised orthologous group
LIMDEABD_01897	3.11e-94	kdpC	3.6.3.12	-	P	ko:K01548	ko02020,map02020	ko00000,ko00001,ko01000	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
LIMDEABD_01898	0.0	kdpB	3.6.3.12	-	P	ko:K01547	ko02020,map02020	ko00000,ko00001,ko01000	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
LIMDEABD_01899	0.0	kdpA	3.6.3.12	-	P	ko:K01546	ko02020,map02020	ko00000,ko00001,ko01000	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
LIMDEABD_01902	4.66e-272	-	-	-	T	ko:K02481	-	ko00000,ko02022	acetoacetate metabolism regulatory protein AtoC K07714
LIMDEABD_01903	6.5e-235	-	-	-	I	-	-	-	Acyltransferase family
LIMDEABD_01904	1.07e-313	-	-	-	G	-	-	-	Glycosyl hydrolase family 20, catalytic domain
LIMDEABD_01905	1.19e-219	-	-	-	S	-	-	-	Calcineurin-like phosphoesterase
LIMDEABD_01906	4.42e-131	-	-	-	S	-	-	-	Putative polysaccharide deacetylase
LIMDEABD_01907	1.79e-132	-	-	-	S	-	-	-	Flavin reductase-like protein
LIMDEABD_01908	2.35e-192	xerC	-	-	D	ko:K03733	-	ko00000,ko03036	Belongs to the 'phage' integrase family. XerC subfamily
LIMDEABD_01909	1.72e-59	raiA	-	-	J	ko:K05808	-	ko00000,ko03009	Ribosomal subunit interface protein
LIMDEABD_01910	1.13e-51	-	-	-	S	-	-	-	Domain of unknown function (DUF4493)
LIMDEABD_01912	6.97e-86	-	-	-	S	-	-	-	COG NOG14444 non supervised orthologous group
LIMDEABD_01914	6.32e-155	-	-	-	S	-	-	-	N-terminal domain of galactosyltransferase
LIMDEABD_01915	1.45e-196	-	-	-	M	-	-	-	Stealth protein CR1, conserved region 1
LIMDEABD_01916	8.27e-190	-	2.7.8.12	GT2	M	ko:K09809,ko:K19354	-	ko00000,ko01000,ko01003,ko01005	transferase activity, transferring glycosyl groups
LIMDEABD_01917	0.0	-	-	-	S	ko:K07137	-	ko00000	FAD binding domain
LIMDEABD_01919	1.29e-196	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_01920	1.42e-07	-	-	-	S	-	-	-	An automated process has identified a potential problem with this gene model
LIMDEABD_01921	2.72e-99	-	-	-	U	-	-	-	Mobilization protein
LIMDEABD_01922	4.95e-08	-	-	-	-	-	-	-	-
LIMDEABD_01923	0.0	hsdR	3.1.21.3	-	L	ko:K01153	-	ko00000,ko01000,ko02048	Subunit R is required for both nuclease and ATPase activities, but not for modification
LIMDEABD_01924	2.86e-152	-	-	-	S	-	-	-	FRG
LIMDEABD_01925	5.06e-234	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_01926	1.01e-65	-	3.1.21.3	-	L	ko:K01154	-	ko00000,ko01000,ko02048	Type I restriction modification DNA specificity domain
LIMDEABD_01927	2.03e-08	-	-	-	S	-	-	-	regulation of response to stimulus
LIMDEABD_01929	5.55e-148	-	-	-	-	-	-	-	-
LIMDEABD_01930	9.79e-98	-	-	-	-	-	-	-	-
LIMDEABD_01932	1.15e-32	-	-	-	K	-	-	-	transcriptional regulator
LIMDEABD_01933	0.0	cdr	-	-	P	-	-	-	Belongs to the sulfur carrier protein TusA family
LIMDEABD_01934	1.91e-24	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_01936	1.97e-276	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_01938	2.36e-23	-	-	-	CO	-	-	-	AhpC Tsa family
LIMDEABD_01939	8.07e-110	-	-	-	CO	-	-	-	AhpC TSA family
LIMDEABD_01940	2.88e-130	ruvC	3.1.22.4	-	L	ko:K01159	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LIMDEABD_01941	2.9e-189	-	-	-	CO	-	-	-	Domain of unknown function (DUF4369)
LIMDEABD_01942	1.36e-163	lpxD	2.3.1.191	-	M	ko:K02536	ko00540,ko01100,map00540,map01100	ko00000,ko00001,ko00002,ko01000,ko01005	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LIMDEABD_01943	2.9e-99	coaD	2.7.7.3	-	H	ko:K00954	ko00770,ko01100,map00770,map01100	ko00000,ko00001,ko00002,ko01000	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
LIMDEABD_01944	1.85e-75	-	-	-	K	ko:K03088	-	ko00000,ko03021	RNA polymerase sigma-70 factor
LIMDEABD_01945	5.84e-161	nagZ2	3.2.1.52	GH20	G	ko:K12373	ko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142	ko00000,ko00001,ko00002,ko01000,ko03110	Glycosyl hydrolase family 20, catalytic domain
LIMDEABD_01946	5.5e-11	-	-	-	S	-	-	-	Domain of unknown function (DUF1735)
LIMDEABD_01947	2.45e-92	-	-	-	S	-	-	-	phosphatase family
LIMDEABD_01948	0.0	-	-	-	S	ko:K21572	-	ko00000,ko02000	RagB SusD family protein
LIMDEABD_01949	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_01950	1.46e-137	-	-	-	PT	-	-	-	Fe2 -dicitrate sensor, membrane component
LIMDEABD_01951	1.13e-93	-	-	-	-	-	-	-	-
LIMDEABD_01952	4.4e-118	-	-	-	E	-	-	-	branched-chain-amino-acid transaminase activity
LIMDEABD_01953	1.14e-234	holA	2.7.7.7	-	L	ko:K02340	ko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440	ko00000,ko00001,ko00002,ko01000,ko03032,ko03400	DNA polymerase III, delta' subunit
LIMDEABD_01954	8.8e-301	tilS	6.3.4.19	-	D	ko:K04075	-	ko00000,ko01000,ko03016	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine
LIMDEABD_01955	1.25e-219	murB	1.3.1.98	-	M	ko:K00075	ko00520,ko00550,ko01100,map00520,map00550,map01100	ko00000,ko00001,ko01000,ko01011	Cell wall formation
LIMDEABD_01957	1.76e-313	-	-	-	H	-	-	-	Domain of unknown function (DUF4301)
LIMDEABD_01959	1.39e-95	-	-	-	C	ko:K02121	ko00190,ko01100,map00190,map01100	ko00000,ko00001,ko00002	Produces ATP from ADP in the presence of a proton gradient across the membrane
LIMDEABD_01960	2.32e-176	-	-	-	C	-	-	-	Protein of unknown function (DUF2764)
LIMDEABD_01962	1.57e-47	ogt	2.1.1.63	-	L	ko:K00567,ko:K07443	-	ko00000,ko01000,ko03400	6-O-methylguanine DNA methyltransferase, DNA binding domain protein
LIMDEABD_01963	2.77e-82	-	-	-	M	ko:K03832	-	ko00000,ko02000	energy transducer activity
LIMDEABD_01964	8.81e-192	menA	2.5.1.74	-	H	ko:K02548	ko00130,ko01100,ko01110,map00130,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01006	Belongs to the MenA family. Type 1 subfamily
LIMDEABD_01965	1.49e-241	xseA	3.1.11.6	-	L	ko:K03601	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
LIMDEABD_01966	8.7e-28	xseB	3.1.11.6	-	L	ko:K03602	ko03430,map03430	ko00000,ko00001,ko01000,ko03400	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
LIMDEABD_01967	9.38e-180	rebM	-	-	Q	-	-	-	Methyltransferase
LIMDEABD_01968	7.18e-187	-	3.1.3.97	-	S	ko:K07053	-	ko00000,ko01000	DNA polymerase alpha chain like domain
LIMDEABD_01969	2.44e-135	hly-III	-	-	S	ko:K11068	-	ko00000,ko02042	membrane protein, hemolysin III homolog
LIMDEABD_01970	0.0	relA	2.7.6.5, 3.1.7.2	-	KT	ko:K00951,ko:K01139	ko00230,map00230	ko00000,ko00001,ko01000,ko03009	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LIMDEABD_01971	3.07e-148	-	-	-	E	-	-	-	Acetyltransferase (GNAT) family
LIMDEABD_01972	1.4e-281	argG	6.3.4.5	-	E	ko:K01940	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418	ko00000,ko00001,ko00002,ko01000,ko04147	Arginosuccinate synthase
LIMDEABD_01973	1.3e-199	argC	1.2.1.38	-	E	ko:K00145	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LIMDEABD_01974	1.25e-243	argD	2.6.1.11, 2.6.1.17	-	E	ko:K00821	ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000,ko01007	Aminotransferase class-III
LIMDEABD_01975	3.11e-222	argF	2.1.3.11, 2.1.3.9	-	E	ko:K09065,ko:K13043	ko00220,ko01100,ko01230,map00220,map01100,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the ATCase OTCase family
LIMDEABD_01976	1.44e-160	argB	2.7.2.8	-	E	ko:K00930	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Belongs to the acetylglutamate kinase family. ArgB subfamily
LIMDEABD_01977	1.46e-213	argE	3.5.1.16	-	E	ko:K01438	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230	ko00000,ko00001,ko00002,ko01000	Peptidase dimerisation domain
LIMDEABD_01978	6.76e-288	argH	4.3.2.1	-	E	ko:K01755	ko00220,ko00250,ko01100,ko01110,ko01130,ko01230,map00220,map00250,map01100,map01110,map01130,map01230	ko00000,ko00001,ko00002,ko01000,ko04147	Lyase
LIMDEABD_01979	6.55e-317	-	-	-	P	-	-	-	N-terminal domain of unknown function (DUF4140)
LIMDEABD_01980	1.66e-125	efp	-	-	J	ko:K02356	-	ko00000,ko03012	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LIMDEABD_01981	3e-138	pgdA_1	-	-	G	-	-	-	Polysaccharide deacetylase
LIMDEABD_01982	8.59e-206	-	-	-	L	-	-	-	Domain of unknown function (DUF4837)
LIMDEABD_01983	1.57e-313	cls	-	-	I	ko:K06131	ko00564,ko01100,map00564,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIMDEABD_01984	2.47e-134	-	-	-	KT	-	-	-	helix_turn_helix, Lux Regulon
LIMDEABD_01985	9.39e-210	-	-	-	T	-	-	-	histidine kinase DNA gyrase B
LIMDEABD_01986	5.94e-164	surE	3.1.3.5	-	S	ko:K03787	ko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110	ko00000,ko00001,ko01000	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LIMDEABD_01987	2.42e-79	rplS	-	-	J	ko:K02884	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
LIMDEABD_01988	6.92e-41	-	-	-	K	-	-	-	Peptidase S24-like
LIMDEABD_01989	5.05e-97	-	-	-	S	-	-	-	Thiol-activated cytolysin
LIMDEABD_01990	8.92e-91	fmo	-	-	S	ko:K11031	ko02024,map02024	ko00000,ko00001,ko02042	Thiol-activated cytolysin
LIMDEABD_01991	2.26e-40	-	-	-	U	-	-	-	Putative binding domain, N-terminal
LIMDEABD_01993	1.1e-11	-	-	-	-	-	-	-	-
LIMDEABD_01997	1.24e-232	-	-	-	L	-	-	-	DNA primase
LIMDEABD_01999	7.76e-220	-	-	-	L	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_02005	9.63e-114	-	-	-	L	-	-	-	non supervised orthologous group
LIMDEABD_02007	5.49e-108	yvqK	2.5.1.17	-	S	ko:K00798	ko00860,ko01100,map00860,map01100	ko00000,ko00001,ko00002,ko01000	Cobalamin adenosyltransferase
LIMDEABD_02009	3.4e-276	yhiN	-	-	S	ko:K07007	-	ko00000	HI0933-like protein
LIMDEABD_02011	3.66e-204	nusB	-	-	K	ko:K03625	-	ko00000,ko03009,ko03021	NusB family
LIMDEABD_02012	7.13e-75	-	-	-	S	-	-	-	Protein of unknown function (DUF1573)
LIMDEABD_02013	8.82e-68	yajC	-	-	U	ko:K03210	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	protein transport
LIMDEABD_02014	2.9e-63	nrdG	1.97.1.4	-	C	ko:K04068	-	ko00000,ko01000	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LIMDEABD_02015	0.0	nrdD	1.1.98.6	-	FK	ko:K21636	ko00230,ko00240,ko01100,map00230,map00240,map01100	ko00000,ko00001,ko00002,ko01000	Ribonucleoside-triphosphate reductase
LIMDEABD_02017	3.73e-40	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_02018	2.82e-37	-	-	-	S	-	-	-	Transglycosylase associated protein
LIMDEABD_02020	3.57e-272	nhaD	-	-	P	-	-	-	Citrate transporter
LIMDEABD_02021	9.33e-83	-	-	-	O	-	-	-	Psort location Extracellular, score
LIMDEABD_02024	0.0	-	-	-	-	-	-	-	-
LIMDEABD_02025	0.0	-	-	-	E	ko:K21572	-	ko00000,ko02000	COG NOG25454 non supervised orthologous group
LIMDEABD_02026	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_02029	6.54e-115	-	-	-	S	-	-	-	Short repeat of unknown function (DUF308)
LIMDEABD_02030	9.52e-87	-	-	-	M	-	-	-	chlorophyll binding
LIMDEABD_02032	6.03e-43	-	-	-	M	-	-	-	non supervised orthologous group
LIMDEABD_02033	0.000202	-	-	-	-	-	-	-	-
LIMDEABD_02034	2.03e-65	-	-	-	S	-	-	-	Protein of unknown function, DUF488
LIMDEABD_02035	4.14e-11	-	-	-	E	-	-	-	Glyoxalase-like domain
LIMDEABD_02037	1.56e-117	rpoE	-	-	K	ko:K03088	-	ko00000,ko03021	Belongs to the sigma-70 factor family. ECF subfamily
LIMDEABD_02038	1.04e-173	fieF	-	-	P	-	-	-	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LIMDEABD_02039	0.0	proS	6.1.1.15	-	J	ko:K01881	ko00970,map00970	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016	Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro)
LIMDEABD_02040	0.0	-	-	-	I	-	-	-	Outer membrane protein transport protein, Ompp1 FadL TodX
LIMDEABD_02041	1.79e-124	-	-	-	S	-	-	-	Psort location OuterMembrane, score
LIMDEABD_02042	1.03e-34	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02043	0.0	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02044	7.09e-125	-	-	-	M	-	-	-	chlorophyll binding
LIMDEABD_02045	0.0	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02046	0.0	-	-	-	M	-	-	-	chlorophyll binding
LIMDEABD_02047	6.8e-177	-	-	-	C	-	-	-	radical SAM domain protein
LIMDEABD_02050	2.3e-42	-	-	-	L	-	-	-	DNA photolyase activity
LIMDEABD_02052	3.18e-07	-	-	-	L	-	-	-	Phage integrase, N-terminal SAM-like domain
LIMDEABD_02053	3.61e-121	-	-	-	K	-	-	-	transcriptional regulator, TetR family
LIMDEABD_02054	7.97e-103	-	-	-	-	-	-	-	-
LIMDEABD_02055	1.13e-108	-	-	-	-	-	-	-	-
LIMDEABD_02056	1.78e-26	-	-	-	-	-	-	-	-
LIMDEABD_02057	9.34e-227	-	-	-	S	ko:K06867	-	ko00000	ankyrin repeat
LIMDEABD_02058	1.89e-27	-	-	-	S	-	-	-	Ankyrin repeats (many copies)
LIMDEABD_02059	8.14e-194	-	-	-	S	-	-	-	Protein of unknown function (DUF1266)
LIMDEABD_02060	1.75e-166	-	-	-	S	-	-	-	Protein of unknown function (DUF1266)
LIMDEABD_02061	1.67e-86	-	-	-	-	-	-	-	-
LIMDEABD_02063	3.68e-56	-	-	-	-	-	-	-	-
LIMDEABD_02064	7.37e-181	-	-	-	S	-	-	-	Immunity protein Imm5
LIMDEABD_02065	3.66e-107	-	3.1.5.1	-	F	ko:K01129	ko00230,map00230	ko00000,ko00001,ko01000	Deoxyguanosinetriphosphate triphosphohydrolase
LIMDEABD_02066	5.34e-107	sbcC	-	-	L	ko:K03546	-	ko00000,ko03400	ATPase involved in DNA repair
LIMDEABD_02068	2.9e-23	-	-	-	S	-	-	-	COG NOG37914 non supervised orthologous group
LIMDEABD_02069	5.6e-50	-	-	-	U	-	-	-	Relaxase/Mobilisation nuclease domain
LIMDEABD_02070	3.79e-58	-	-	-	U	-	-	-	Relaxase/Mobilisation nuclease domain
LIMDEABD_02071	1.04e-12	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02073	3.17e-32	-	-	-	M	-	-	-	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LIMDEABD_02074	1.93e-119	-	-	-	O	-	-	-	Peptidase, S8 S53 family
LIMDEABD_02077	1.17e-136	-	-	-	S	ko:K21572	-	ko00000,ko02000	Pfam:SusD
LIMDEABD_02078	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_02080	1.73e-312	-	-	-	T	-	-	-	ATPase histidine kinase DNA gyrase B HSP90 domain protein
LIMDEABD_02081	1.3e-50	-	-	-	S	-	-	-	COG NOG19094 non supervised orthologous group
LIMDEABD_02082	3.73e-05	-	-	-	O	-	-	-	Peptidyl-prolyl cis-trans isomerase
LIMDEABD_02085	3.06e-106	ruvA	3.6.4.12	-	L	ko:K03550	ko03440,map03440	ko00000,ko00001,ko01000,ko03400	The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
LIMDEABD_02086	5.24e-105	-	-	-	M	ko:K06142	-	ko00000	unfolded protein binding
LIMDEABD_02087	9.57e-175	dacA	-	-	S	-	-	-	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
LIMDEABD_02088	4.46e-95	-	-	-	J	-	-	-	Acetyltransferase (GNAT) domain
LIMDEABD_02089	0.0	bglB_4	3.2.1.21	GH3	G	ko:K05349	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110	ko00000,ko00001,ko01000	Glycosyl hydrolase family 3
LIMDEABD_02090	0.0	-	-	-	S	-	-	-	Domain of unknown function (DUF5121)
LIMDEABD_02091	0.0	-	3.2.1.45	GH30	G	ko:K01201	ko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142	ko00000,ko00001,ko01000	Belongs to the glycosyl hydrolase 30 family
LIMDEABD_02092	0.0	-	-	-	GM	ko:K21572	-	ko00000,ko02000	SusD family
LIMDEABD_02093	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_02094	0.0	-	-	-	D	-	-	-	Psort location
LIMDEABD_02095	6.59e-54	secG	-	-	U	ko:K03075	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Preprotein translocase SecG subunit
LIMDEABD_02096	1.24e-69	-	-	-	-	-	-	-	-
LIMDEABD_02097	1.1e-98	lptE	-	-	S	-	-	-	Lipopolysaccharide-assembly
LIMDEABD_02098	2.86e-256	fhlA	-	-	T	-	-	-	Bacterial regulatory protein, Fis family
LIMDEABD_02102	7.81e-97	-	-	-	S	-	-	-	Psort location Cytoplasmic, score 8.96
LIMDEABD_02103	1.96e-37	rpmF	-	-	J	ko:K02911	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011,ko03029	Ribosomal L32p protein family
LIMDEABD_02104	4.2e-194	plsX	2.3.1.15	-	I	ko:K03621	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA
LIMDEABD_02105	1.2e-227	fabH	2.3.1.180	-	I	ko:K00648	ko00061,ko01100,ko01212,map00061,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIMDEABD_02106	1.41e-114	lpsA	-	-	S	-	-	-	Lipopolysaccharide biosynthesis protein
LIMDEABD_02107	1.43e-151	-	-	-	T	-	-	-	Transcriptional regulatory protein, C terminal
LIMDEABD_02108	4.31e-256	-	-	-	T	-	-	-	His Kinase A (phospho-acceptor) domain
LIMDEABD_02109	5.65e-79	-	-	-	S	-	-	-	Putative beta-lactamase-inhibitor-like, PepSY-like
LIMDEABD_02110	2.02e-101	-	1.16.3.2	-	P	ko:K02217	-	ko00000,ko01000	Iron-storage protein
LIMDEABD_02111	0.0	-	3.2.1.23	-	G	ko:K01190	ko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100	ko00000,ko00001,ko01000	Beta galactosidase small chain
LIMDEABD_02112	6.11e-218	-	-	-	S	-	-	-	37-kD nucleoid-associated bacterial protein
LIMDEABD_02113	1.46e-68	-	-	-	-	-	-	-	-
LIMDEABD_02114	5.65e-133	-	-	-	S	-	-	-	Oxidoreductase, short chain dehydrogenase reductase family
LIMDEABD_02115	8.55e-102	-	-	-	T	-	-	-	COG COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
LIMDEABD_02116	2.53e-35	-	-	-	-	-	-	-	-
LIMDEABD_02117	3.92e-94	-	-	-	S	-	-	-	SNARE-like domain protein
LIMDEABD_02118	5.12e-96	yvbK	2.3.1.82	-	K	ko:K03827,ko:K18815	-	br01600,ko00000,ko01000,ko01504	Acetyltransferase (GNAT) domain
LIMDEABD_02119	3.14e-147	-	-	-	S	-	-	-	Bacteriophage protein gp37
LIMDEABD_02121	6.28e-128	-	4.1.2.50, 4.2.3.12	-	S	ko:K01737	ko00790,ko01100,map00790,map01100	ko00000,ko00001,ko00002,ko01000,ko03016	Psort location Cytoplasmic, score 8.96
LIMDEABD_02122	3.35e-232	-	2.7.11.1	-	S	ko:K07154	-	ko00000,ko01000,ko01001,ko02048	Psort location Cytoplasmic, score 8.96
LIMDEABD_02124	1.85e-118	-	-	-	S	-	-	-	Domain of unknown function (DUF4377)
LIMDEABD_02125	9.05e-106	-	-	-	-	-	-	-	-
LIMDEABD_02126	3.23e-75	-	-	-	S	-	-	-	domain protein
LIMDEABD_02128	1.01e-150	-	-	-	K	-	-	-	Helix-turn-helix domain
LIMDEABD_02129	1.25e-202	kduI	5.3.1.17	-	G	ko:K01815	ko00040,map00040	ko00000,ko00001,ko01000	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
LIMDEABD_02130	1.1e-180	idnO	1.1.1.69	-	IQ	ko:K00046	-	ko00000,ko01000	Oxidoreductase, short chain dehydrogenase reductase family protein
LIMDEABD_02131	0.0	-	-	-	S	-	-	-	ABC transporter, ATP-binding protein
LIMDEABD_02132	0.0	porA	1.2.7.11, 1.2.7.3	-	C	ko:K00174	ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000	2-oxoacid acceptor oxidoreductase, alpha subunit
LIMDEABD_02133	5.36e-247	oorB	1.2.7.11, 1.2.7.3	-	C	ko:K00175	ko00010,ko00020,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00620,map00650,map00720,map01100,map01120,map01130,map01200	br01601,ko00000,ko00001,ko00002,ko01000	ferredoxin oxidoreductase, subunit beta
LIMDEABD_02135	5.94e-189	-	-	-	G	-	-	-	COG COG1082 Sugar phosphate isomerases epimerases
LIMDEABD_02136	1.21e-199	-	-	-	G	-	-	-	COG NOG16664 non supervised orthologous group
LIMDEABD_02137	0.0	-	-	-	S	-	-	-	Tat pathway signal sequence domain protein
LIMDEABD_02138	2.13e-15	tatA	-	-	U	ko:K03116	ko03060,ko03070,map03060,map03070	ko00000,ko00001,ko00002,ko02044	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system
LIMDEABD_02139	6.11e-233	-	-	-	S	-	-	-	Oxidoreductase NAD-binding domain protein
LIMDEABD_02140	1.25e-204	-	-	-	D	-	-	-	Psort location
LIMDEABD_02141	3.6e-305	cvrA	-	-	P	ko:K11105	-	ko00000,ko02000	Sodium/hydrogen exchanger family
LIMDEABD_02144	8.6e-151	-	-	-	M	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LIMDEABD_02145	0.0	fabZ	3.5.1.108, 4.2.1.59	-	IM	ko:K16363	ko00061,ko00540,ko01100,ko01212,map00061,map00540,map01100,map01212	ko00000,ko00001,ko00002,ko01000,ko01004,ko01005	Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis
LIMDEABD_02146	2.67e-113	lpxA	2.3.1.129	-	M	ko:K00677	ko00540,ko01100,ko01503,map00540,map01100,map01503	ko00000,ko00001,ko00002,ko01000,ko01005	Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LIMDEABD_02147	0.0	-	-	-	S	-	-	-	Belongs to the peptidase M16 family
LIMDEABD_02148	3.37e-98	-	-	-	S	ko:K09793	-	ko00000	Protein of unknown function (DUF456)
LIMDEABD_02149	4.64e-76	panD	4.1.1.11	-	H	ko:K01579	ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
LIMDEABD_02150	1.44e-173	panC	6.3.2.1	-	H	ko:K01918	ko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110	ko00000,ko00001,ko00002,ko01000	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LIMDEABD_02151	0.0	-	3.4.14.4	-	S	ko:K01277	-	ko00000,ko01000,ko01002	Peptidase family M49
LIMDEABD_02152	3.55e-110	-	-	-	-	-	-	-	-
LIMDEABD_02153	9.55e-66	-	-	-	K	ko:K03088	-	ko00000,ko03021	RNA polymerase sigma-70 factor
LIMDEABD_02154	1.11e-78	-	-	-	PT	-	-	-	COG3712 Fe2 -dicitrate sensor, membrane component
LIMDEABD_02155	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_02156	1.09e-216	-	-	-	H	-	-	-	Susd and RagB outer membrane lipoprotein
LIMDEABD_02158	4.34e-116	-	-	-	S	-	-	-	Pentaxin family
LIMDEABD_02159	1.27e-16	-	-	-	G	-	-	-	Belongs to the glycosyl hydrolase 18 family
LIMDEABD_02160	6.57e-46	-	-	-	S	-	-	-	Pentaxin family
LIMDEABD_02163	1.11e-235	-	-	-	L	-	-	-	DNA primase
LIMDEABD_02166	5.46e-14	-	-	-	-	-	-	-	-
LIMDEABD_02170	1.38e-103	-	-	-	K	ko:K03088	-	ko00000,ko03021	DNA-templated transcription, initiation
LIMDEABD_02171	1.34e-137	-	-	-	PT	-	-	-	Domain of unknown function (DUF4974)
LIMDEABD_02172	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_02173	0.0	-	-	-	S	-	-	-	Susd and RagB outer membrane lipoprotein
LIMDEABD_02174	4.55e-213	-	-	-	G	-	-	-	Putative glycoside hydrolase Family 18, chitinase_18
LIMDEABD_02175	1.72e-306	-	-	-	G	-	-	-	Concanavalin A-like lectin/glucanases superfamily
LIMDEABD_02176	0.0	-	-	-	G	-	-	-	Glycosyl hydrolases family 18
LIMDEABD_02177	7.28e-79	-	3.2.1.96	-	G	ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	chitin binding
LIMDEABD_02178	2.55e-53	-	3.2.1.96	-	G	ko:K01227	ko00511,map00511	ko00000,ko00001,ko01000	chitin binding
LIMDEABD_02182	2.48e-121	-	3.1.3.10, 3.1.3.104	-	S	ko:K07025,ko:K20866,ko:K21063	ko00010,ko00740,ko01100,ko01110,ko01120,map00010,map00740,map01100,map01110,map01120	ko00000,ko00001,ko00002,ko01000	Haloacid dehalogenase-like hydrolase
LIMDEABD_02183	1.99e-163	-	-	-	S	ko:K07124	-	ko00000	Belongs to the short-chain dehydrogenases reductases (SDR) family
LIMDEABD_02184	9.24e-288	namA	-	-	C	-	-	-	NADH:flavin oxidoreductase / NADH oxidase family
LIMDEABD_02185	4.11e-174	-	1.3.1.22	-	S	ko:K12343	ko00140,map00140	ko00000,ko00001,ko01000	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_02186	0.0	gadB	4.1.1.15, 4.1.2.27	-	E	ko:K01580,ko:K01634	ko00250,ko00410,ko00430,ko00600,ko00650,ko01100,ko01110,ko01120,ko02024,ko04071,ko04727,ko04940,map00250,map00410,map00430,map00600,map00650,map01100,map01110,map01120,map02024,map04071,map04727,map04940	ko00000,ko00001,ko00002,ko01000	Belongs to the group II decarboxylase family
LIMDEABD_02187	2.7e-143	cobB	-	-	K	ko:K12410	-	ko00000,ko01000	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LIMDEABD_02189	2.02e-251	argK	-	-	E	ko:K07588	-	ko00000,ko01000	LAO AO transport system ATPase
LIMDEABD_02190	1.74e-74	-	-	-	CO	-	-	-	COG0526, thiol-disulfide isomerase and thioredoxins
LIMDEABD_02191	4.02e-166	-	-	-	M	-	-	-	Glycosyltransferase, group 1 family protein
LIMDEABD_02192	3.32e-93	mce	5.1.99.1	-	E	ko:K05606	ko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200	ko00000,ko00001,ko00002,ko01000	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
LIMDEABD_02193	0.0	mmdA	-	-	I	-	-	-	Carboxyl transferase domain
LIMDEABD_02194	2.34e-63	-	-	-	C	-	-	-	sodium ion export across plasma membrane
LIMDEABD_02195	6.47e-81	mmdC	-	-	I	-	-	-	Biotin-requiring enzyme
LIMDEABD_02196	1.78e-241	oadB	4.1.1.3	-	C	ko:K01572	ko00620,ko01100,map00620,map01100	ko00000,ko00001,ko01000,ko02000	Na+-transporting oxaloacetate decarboxylase beta subunit
LIMDEABD_02197	7.34e-13	-	-	-	U	-	-	-	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LIMDEABD_02198	3.07e-103	rplM	-	-	J	ko:K02871	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LIMDEABD_02199	4.14e-81	rpsI	-	-	J	ko:K02996	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Belongs to the universal ribosomal protein uS9 family
LIMDEABD_02201	5.7e-68	-	-	-	S	-	-	-	Thioesterase superfamily
LIMDEABD_02202	1.35e-121	-	-	-	S	-	-	-	Domain of unknown function (DUF4294)
LIMDEABD_02204	7.67e-293	ffh	3.6.5.4	-	U	ko:K03106	ko02024,ko03060,ko03070,map02024,map03060,map03070	ko00000,ko00001,ko00002,ko01000,ko02044	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LIMDEABD_02205	1.77e-173	-	-	-	M	-	-	-	peptidase S41
LIMDEABD_02208	1.23e-195	era	-	-	S	ko:K03595	-	ko00000,ko03009,ko03029	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LIMDEABD_02209	2.94e-198	-	-	-	S	-	-	-	Tetratricopeptide repeat
LIMDEABD_02210	4.4e-309	-	-	-	G	-	-	-	Major Facilitator Superfamily
LIMDEABD_02211	1.2e-61	-	-	-	S	-	-	-	GtrA-like protein
LIMDEABD_02212	7.79e-191	-	-	-	G	-	-	-	polysaccharide deacetylase
LIMDEABD_02213	6.64e-84	-	-	-	M	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_02214	2.17e-216	-	-	-	M	-	-	-	Psort location CytoplasmicMembrane, score 10.00
LIMDEABD_02215	8.64e-264	-	-	-	M	-	-	-	Glycosyl transferases group 1
LIMDEABD_02216	1.17e-112	-	1.16.3.1	-	P	ko:K03594	ko00860,map00860	ko00000,ko00001,ko01000	Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex
LIMDEABD_02218	3.13e-167	yfbB	-	-	I	-	-	-	Ndr family
LIMDEABD_02219	1.96e-25	-	-	-	-	-	-	-	-
LIMDEABD_02220	2.93e-170	dapF	5.1.1.7	-	E	ko:K01778	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230	ko00000,ko00001,ko00002,ko01000	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LIMDEABD_02221	6.05e-169	-	1.5.1.38, 1.5.1.39	-	C	ko:K19285,ko:K19286	ko00740,ko01100,map00740,map01100	ko00000,ko00001,ko01000	Nitroreductase family
LIMDEABD_02222	0.0	-	-	-	M	-	-	-	Surface antigen
LIMDEABD_02223	3.91e-181	-	-	-	K	-	-	-	helix_turn_helix, arabinose operon control protein
LIMDEABD_02224	7.95e-82	ompH	-	-	M	ko:K06142	-	ko00000	Outer membrane protein (OmpH-like)
LIMDEABD_02225	2.37e-95	ompH	-	-	M	ko:K06142	-	ko00000	membrane
LIMDEABD_02226	0.0	yaeT	-	-	M	ko:K07277	-	ko00000,ko02000,ko03029	Outer membrane protein assembly complex, YaeT protein
LIMDEABD_02227	1.97e-149	uppS	2.5.1.31	-	H	ko:K00806	ko00900,ko01110,map00900,map01110	ko00000,ko00001,ko01000,ko01006	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LIMDEABD_02228	1.88e-178	nadK	2.7.1.23	-	H	ko:K00858	ko00760,ko01100,map00760,map01100	ko00000,ko00001,ko01000	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LIMDEABD_02229	5.14e-156	pdxJ	2.6.99.2	-	H	ko:K03474	ko00750,ko01100,map00750,map01100	ko00000,ko00001,ko00002,ko01000	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LIMDEABD_02230	8.46e-119	estA	-	-	E	-	-	-	GDSL-like Lipase/Acylhydrolase
LIMDEABD_02231	4.26e-308	cca	2.7.7.19, 2.7.7.72	-	J	ko:K00970,ko:K00974	ko03013,ko03018,map03013,map03018	ko00000,ko00001,ko01000,ko03016,ko03019	tRNA nucleotidyltransferase poly(A) polymerase
LIMDEABD_02232	5e-280	-	4.2.2.5	PL8	N	ko:K19049	-	ko00000,ko01000	Polysaccharide lyase family 8, N terminal alpha-helical domain
LIMDEABD_02233	1.27e-127	-	-	-	G	-	-	-	Glycosyl Hydrolase Family 88
LIMDEABD_02234	2.74e-94	-	-	-	P	ko:K21572	-	ko00000,ko02000	Pfam:SusD
LIMDEABD_02235	3e-08	-	-	-	P	-	-	-	Sulfatase
LIMDEABD_02236	2.98e-230	-	5.1.3.3	-	G	ko:K01785	ko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130	ko00000,ko00001,ko00002,ko01000	Converts alpha-aldose to the beta-anomer
LIMDEABD_02237	0.0	pbpC	2.4.1.129	GT51	M	ko:K05367	ko00550,map00550	ko00000,ko00001,ko01000,ko01003,ko01011	Penicillin-Binding Protein C-terminus Family
LIMDEABD_02238	0.0	-	-	-	S	ko:K06894	-	ko00000	Alpha-2-Macroglobulin
LIMDEABD_02241	5.2e-98	-	-	-	S	-	-	-	HEPN domain
LIMDEABD_02242	2.51e-156	-	-	-	K	-	-	-	BRO family, N-terminal domain
LIMDEABD_02244	1.26e-165	-	-	-	H	-	-	-	Methyltransferase domain protein
LIMDEABD_02245	0.0	-	-	-	O	-	-	-	Peptidase, S8 S53 family
LIMDEABD_02246	2.41e-144	-	-	-	M	-	-	-	Chaperone of endosialidase
LIMDEABD_02248	1.14e-309	-	-	-	S	-	-	-	Tetratricopeptide repeat protein
LIMDEABD_02249	2.84e-195	-	-	-	U	-	-	-	Type IV secretion-system coupling protein DNA-binding domain
LIMDEABD_02250	0.0	rpoC	2.7.7.6	-	K	ko:K03046	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LIMDEABD_02251	0.0	rpoB	2.7.7.6	-	K	ko:K03043	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LIMDEABD_02253	4.44e-61	rplL	-	-	J	ko:K02935	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
LIMDEABD_02254	1.38e-108	rplJ	-	-	J	ko:K02864	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Ribosomal protein L10
LIMDEABD_02255	7.64e-155	rplA	-	-	J	ko:K02863	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
LIMDEABD_02256	1.87e-97	rplK	-	-	J	ko:K02867	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LIMDEABD_02258	0.0	-	-	-	U	-	-	-	Relaxase/Mobilisation nuclease domain
LIMDEABD_02260	1.08e-143	-	-	-	S	-	-	-	HEPN domain
LIMDEABD_02261	1.37e-30	-	-	-	S	-	-	-	PFAM ORF6N domain
LIMDEABD_02262	7.59e-25	-	-	-	S	-	-	-	PFAM ORF6N domain
LIMDEABD_02263	2.23e-234	-	-	-	S	-	-	-	Psort location Cytoplasmic, score
LIMDEABD_02264	0.0	-	-	-	U	-	-	-	Type IV secretion-system coupling protein DNA-binding domain
LIMDEABD_02266	1.46e-34	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02267	0.0	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02268	1.6e-128	-	-	-	M	-	-	-	chlorophyll binding
LIMDEABD_02269	0.0	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02270	0.0	-	-	-	M	-	-	-	chlorophyll binding
LIMDEABD_02271	2.52e-197	-	-	-	C	-	-	-	radical SAM domain protein
LIMDEABD_02273	3.75e-156	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_02274	3.08e-286	tuf	-	-	J	ko:K02358	-	ko00000,ko03012,ko03029,ko04147	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LIMDEABD_02278	5.33e-85	-	-	-	J	ko:K03817	-	ko00000,ko01000,ko03009	Acetyltransferase, gnat family
LIMDEABD_02279	9.49e-190	-	-	-	K	-	-	-	Transcriptional regulator
LIMDEABD_02280	2.1e-131	-	-	-	S	-	-	-	Transposase
LIMDEABD_02281	2.7e-56	rpmE2	-	-	J	ko:K02909	ko03010,map03010	br01610,ko00000,ko00001,ko00002,ko03011	50S ribosomal protein L31 type B
LIMDEABD_02283	4.6e-187	-	-	-	L	-	-	-	Belongs to the 'phage' integrase family
LIMDEABD_02284	2.31e-124	-	-	-	-	-	-	-	-
LIMDEABD_02287	8.95e-291	-	2.3.1.29	-	E	ko:K00639	ko00260,map00260	ko00000,ko00001,ko01000,ko01007	Aminotransferase class I and II
LIMDEABD_02288	7.2e-216	sstT	-	-	U	-	-	-	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family
LIMDEABD_02289	4.22e-169	-	-	-	C	-	-	-	radical SAM domain protein
LIMDEABD_02290	1.29e-145	yaaA	-	-	S	ko:K09861	-	ko00000	Belongs to the UPF0246 family
LIMDEABD_02292	0.0	dxs	2.2.1.7	-	H	ko:K01662	ko00730,ko00900,ko01100,ko01110,ko01130,map00730,map00900,map01100,map01110,map01130	ko00000,ko00001,ko00002,ko01000	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LIMDEABD_02293	3.75e-152	pyrH	2.7.4.22	-	F	ko:K09903	ko00240,ko01100,map00240,map01100	ko00000,ko00001,ko01000	Catalyzes the reversible phosphorylation of UMP to UDP
LIMDEABD_02294	1.16e-106	-	-	-	CO	-	-	-	AhpC TSA family
LIMDEABD_02295	1.31e-116	frr	-	-	J	ko:K02838	-	ko00000,ko03012	Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
LIMDEABD_02296	0.0	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02297	3.88e-129	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02298	0.0	-	-	-	S	-	-	-	Domain of unknown function (DUF4906)
LIMDEABD_02299	1.94e-118	-	-	-	M	-	-	-	chlorophyll binding
LIMDEABD_02300	0.0	-	-	-	M	-	-	-	chlorophyll binding
LIMDEABD_02302	1.2e-126	-	-	-	S	-	-	-	Bacteriophage abortive infection AbiH
LIMDEABD_02303	6.91e-42	rimP	-	-	S	ko:K09748	-	ko00000,ko03009	Required for maturation of 30S ribosomal subunits
LIMDEABD_02304	1.19e-279	nusA	-	-	K	ko:K02600	-	ko00000,ko03009,ko03021	Participates in both transcription termination and antitermination
LIMDEABD_02305	0.0	infB	-	-	J	ko:K02519	-	ko00000,ko03012,ko03029	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LIMDEABD_02306	2.79e-311	-	-	-	C	-	-	-	Acetyl-CoA hydrolase transferase
LIMDEABD_02311	1.24e-69	-	3.1.6.1	-	P	ko:K01130	ko00140,ko00600,map00140,map00600	ko00000,ko00001,ko01000	Sulfatase
LIMDEABD_02312	0.0	yhgF	-	-	K	ko:K06959	-	ko00000	Tex-like protein N-terminal domain
LIMDEABD_02313	0.0	-	3.2.1.22	-	G	ko:K07407	ko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603	ko00000,ko00001,ko01000	Glycosyl hydrolase family 36 N-terminal domain
LIMDEABD_02314	3.68e-194	-	-	-	P	-	-	-	Outer membrane protein beta-barrel family
LIMDEABD_02315	1.55e-28	-	-	-	S	-	-	-	Domain of unknown function (DUF5036)
LIMDEABD_02318	1.27e-91	-	-	-	S	-	-	-	Protein of unknown function (DUF1273)
LIMDEABD_02319	9.71e-180	-	-	-	-	-	-	-	-
LIMDEABD_02320	8.39e-299	pfp	2.7.1.11, 2.7.1.90	-	H	ko:K00895,ko:K21071	ko00010,ko00030,ko00051,ko00052,ko00680,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00051,map00052,map00680,map01100,map01110,map01120,map01130	ko00000,ko00001,ko01000	Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions
LIMDEABD_02321	6.79e-38	cspA	-	-	K	ko:K03704	-	ko00000,ko03000	Cold shock
LIMDEABD_02323	2.69e-254	-	-	-	C	-	-	-	Radical SAM domain protein
LIMDEABD_02324	8.79e-112	-	-	-	S	-	-	-	COG1137 ABC-type (unclassified) transport system, ATPase component
LIMDEABD_02327	3.24e-108	-	-	-	L	-	-	-	non supervised orthologous group
LIMDEABD_02330	2.15e-138	lspA	3.4.23.36	-	MU	ko:K03101	ko03060,map03060	ko00000,ko00001,ko01000,ko01002	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LIMDEABD_02331	0.0	-	-	-	O	-	-	-	Peptidase, S8 S53 family
LIMDEABD_02334	0.0	clpC	-	-	O	ko:K03696	ko01100,map01100	ko00000,ko03110	ATPase family associated with various cellular activities (AAA)
LIMDEABD_02335	1.53e-107	-	-	-	S	ko:K07095	-	ko00000	Calcineurin-like phosphoesterase superfamily domain
LIMDEABD_02336	1.05e-292	rarA	-	-	L	ko:K07478	-	ko00000	MgsA AAA+ ATPase C terminal
LIMDEABD_02337	9.31e-127	-	-	-	D	-	-	-	COG NOG26086 non supervised orthologous group
LIMDEABD_02339	9.5e-275	-	-	-	U	-	-	-	Relaxase/Mobilisation nuclease domain
LIMDEABD_02340	1.26e-278	-	-	-	-	-	-	-	-
LIMDEABD_02344	4.58e-214	-	-	-	S	-	-	-	Domain of unknown function (DUF4249)
LIMDEABD_02345	0.0	-	-	-	H	-	-	-	TonB-dependent Receptor Plug Domain
LIMDEABD_02346	1.76e-154	-	-	-	M	-	-	-	Chaperone of endosialidase
LIMDEABD_02347	3.89e-131	dcm	2.1.1.37	-	H	ko:K00558,ko:K17398	ko00270,ko01100,ko05206,map00270,map01100,map05206	ko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036	Cytosine-specific methyltransferase
LIMDEABD_02348	5.15e-142	-	-	-	S	-	-	-	Conjugative transposon protein TraO
LIMDEABD_02349	1.78e-204	-	-	-	U	-	-	-	Domain of unknown function (DUF4138)
LIMDEABD_02350	7.64e-113	traM	-	-	S	-	-	-	Conjugative transposon TraM protein
LIMDEABD_02351	1.29e-25	traM	-	-	S	-	-	-	Conjugative transposon TraM protein
LIMDEABD_02353	5.84e-125	-	-	-	U	-	-	-	Conjugative transposon TraK protein
LIMDEABD_02354	1.3e-114	-	-	-	S	-	-	-	Conjugative transposon TraJ protein
LIMDEABD_02355	9.99e-244	-	-	-	G	-	-	-	Domain of Unknown Function (DUF1080)
LIMDEABD_02356	5.57e-307	-	-	-	S	-	-	-	Oxidoreductase family, NAD-binding Rossmann fold
LIMDEABD_02357	0.0	-	-	-	C	-	-	-	Domain of Unknown Function (DUF1080)
LIMDEABD_02358	0.0	-	-	-	H	-	-	-	Susd and RagB outer membrane lipoprotein
LIMDEABD_02359	0.0	-	-	-	P	-	-	-	TonB-linked outer membrane protein, SusC RagA family
LIMDEABD_02364	0.0	-	-	-	U	-	-	-	Conjugation system ATPase, TraG family
LIMDEABD_02366	1.98e-130	-	-	-	U	-	-	-	Domain of unknown function (DUF4141)