Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEFCDMNF_35 | 87779 | 89704 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| JEFCDMNF_24 | 119 | 778 | catA1 | ARO:3002683 | catA1 | 99.54 | 100.00 | V00622.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JEFCDMNF_35 | 87779 | 89704 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JEFCDMNF_24 | 119 | 778 | catA1 | Chloramphenicol | 99.55 | 100.00 | V00622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JEFCDMNF_24 | 122 | 778 | catA1 | type A-1 chloramphenicol O-acetyltransferase | BLASTX | 99.54 | 100.00 | WP_000412211.1 |
| JEFCDMNF_35 | 87779 | 89701 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JEFCDMNF_29 | 13192 | 11612 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JEFCDMNF_3 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_4 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_6 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_7 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_8 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_9 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_10 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_11 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_12 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_13 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_22 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_26 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_28 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_29 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_31 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_32 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_33 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_34 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_35 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_36 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_52 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_54 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_69 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_70 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_71 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_72 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_73 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_74 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_75 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_76 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_77 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_78 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_79 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_80 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_81 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_82 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_83 | 1.0 | 0.0 | 1.0 |
| JEFCDMNF_84 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_85 | 0.0 | 1.0 | 0.0 |
| JEFCDMNF_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)