Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMHCLNIH_7 | 221837 | 222727 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| CMHCLNIH_19 | 42675 | 43271 | catA1 | ARO:3002683 | catA1 | 96.92 | 90.41 | V00622.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMHCLNIH_19 | 42675 | 43336 | catA1 | Chloramphenicol | 99.09 | 100.00 | V00622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMHCLNIH_7 | 221840 | 222727 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| CMHCLNIH_19 | 42678 | 43262 | catA1 | type A-1 chloramphenicol O-acetyltransferase | PARTIALX | 96.92 | 89.04 | WP_000412211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMHCLNIH_1 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_2 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_3 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_4 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_5 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_6 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_7 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_8 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_9 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_10 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_11 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_12 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_13 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_14 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_15 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_16 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_17 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_18 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_19 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_20 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_21 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_22 | 1.0 | 0.0 | 1.0 |
| CMHCLNIH_23 | 1.0 | 0.0 | 1.0 |
| CMHCLNIH_24 | 1.0 | 0.0 | 1.0 |
| CMHCLNIH_25 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_26 | 1.0 | 0.0 | 1.0 |
| CMHCLNIH_27 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_28 | 1.0 | 0.0 | 1.0 |
| CMHCLNIH_29 | 1.0 | 0.0 | 1.0 |
| CMHCLNIH_30 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_31 | 0.0 | 1.0 | 0.0 |
| CMHCLNIH_32 | 1.0 | 0.0 | 1.0 |
| CMHCLNIH_33 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)