Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KCHLPDGN_22 | 239293 | 242856 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.57 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCHLPDGN_1 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_7 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_8 | 1.0 | 0.0 | 1.0 |
| KCHLPDGN_9 | 1.0 | 0.0 | 1.0 |
| KCHLPDGN_10 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_11 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_12 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_13 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_15 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_16 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_17 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_18 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_19 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_20 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_21 | 0.0 | 1.0 | 0.0 |
| KCHLPDGN_22 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCHLPDGN_19 | 311442 | 325455 | False | Siphoviridae | VOG2624, VOG9762, VOG9670, VOG4621, VOG1159, VOG1158, VOG1210, VOG4553, VOG4568, VOG4556, VOG4544, VOG0296 |
| KCHLPDGN_21 | 1330 | 17854 | True | Siphoviridae | VOG4545, VOG4582, VOG3651, VOG6282, VOG1026, VOG2913, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574 |
| KCHLPDGN_21 | 28952 | 36668 | False | Siphoviridae | VOG1563, VOG6495, VOG4602, VOG7656, VOG3477, VOG0275, VOG6043 |
| KCHLPDGN_22 | 435549 | 448374 | False | Siphoviridae | VOG4841, VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG5588, VOG5793, VOG9569, VOG10013 |
Phigaro v2.4.0 (Database: Jan. 2024 release)