Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DKEFPKNB_1 | 0.0 | 1.0 | 0.0 |
| DKEFPKNB_2 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DKEFPKNB_1 | 80047 | 108973 | False | Siphoviridae | VOG4633, VOG4633, VOG5904, VOG4545, VOG0660, VOG4586, VOG0207, VOG10939, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG4966, VOG6005, VOG0327, VOG0634, VOG3307, VOG6972, VOG0635, VOG0635, VOG10062, VOG9667, VOG4606, VOG7429, VOG6545, VOG4548, VOG0322, VOG9708, VOG9844, VOG4552, VOG7236 |
| DKEFPKNB_1 | 1629613 | 1665275 | True | Myoviridae | VOG4054, VOG4544, VOG0720, VOG4564, VOG4564, VOG4555, VOG4572, VOG3480, VOG4623, VOG3888, VOG1900, VOG4870, VOG5612, VOG3890, VOG3891, VOG3892, VOG9841, VOG0476, VOG4865, VOG4885, VOG4885, VOG3894, VOG4691, VOG4862, VOG5763, VOG9945, VOG4705, VOG5087, VOG0703, VOG8294, VOG0275, VOG10613, VOG0862, VOG6495, VOG4603, VOG2228, VOG9151, VOG9708, VOG0906, VOG4799, VOG5046, VOG7236, VOG0275, VOG0275, VOG10613, VOG0862, VOG6495, VOG4603, VOG2228 |
| DKEFPKNB_1 | 1678094 | 1693613 | False | Myoviridae | VOG5866, VOG0720, VOG0720, VOG4564, VOG4564, VOG4564, VOG4555, VOG4572, VOG3480, VOG4623, VOG3888, VOG1900, VOG4870, VOG5612, VOG3890, VOG3891, VOG3892, VOG9841, VOG2186, VOG4865, VOG4885, VOG3894, VOG4691 |
Phigaro v2.4.0 (Database: Jan. 2024 release)