Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJEKBGII_34 | 15498 | 17423 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GJEKBGII_34 | 15498 | 17423 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GJEKBGII_31 | 475081 | 475738 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.24 | 89.52 | M15332 |
| GJEKBGII_31 | 471361 | 472578 | mef(A) | Erythromycin, Azithromycin | 94.83 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJEKBGII_34 | 15498 | 17420 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GJEKBGII_31 | 471361 | 472575 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 99.26 | WP_012102963.1 |
| GJEKBGII_31 | 475082 | 475735 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | PARTIALX | 98.62 | 89.34 | WP_014387027.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GJEKBGII_40 | 118779 | 120359 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJEKBGII_3 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_4 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_6 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_7 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_11 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_14 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_15 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_17 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_18 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_19 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_20 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_21 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_23 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_24 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_26 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_27 | 1.0 | 0.0 | 1.0 |
| GJEKBGII_30 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_31 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_32 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_33 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_34 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_35 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_36 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_37 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_38 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_39 | 0.0 | 1.0 | 0.0 |
| GJEKBGII_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)