Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IFNDJBHN_74 | 257983 | 258180 | CspR | 3.70e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| IFNDJBHN_74 | 257983 | 258180 | CspA | 6.90e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IFNDJBHN_49 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_50 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_51 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_52 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_53 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_54 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_55 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_56 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_57 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_58 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_59 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_60 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_61 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_62 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_63 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_64 | 1.0 | 0.0 | 1.0 |
| IFNDJBHN_66 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_67 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_68 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_69 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_70 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_71 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_72 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_73 | 0.0 | 1.0 | 0.0 |
| IFNDJBHN_74 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IFNDJBHN_72 | 60580 | 78275 | False | Myoviridae | VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
Phigaro v2.4.0 (Database: Jan. 2024 release)