Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIHKBAED_5 | 6663 | 7148 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| IIHKBAED_3 | 2563 | 4482 | tet(W) | ARO:3000194 | tet(W) | 96.87 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IIHKBAED_3 | 2563 | 4482 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | FN396364 |
| IIHKBAED_5 | 6663 | 7148 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIHKBAED_5 | 6666 | 7148 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| IIHKBAED_3 | 2566 | 4482 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IIHKBAED_3 | 8829 | 9605 | rep30 | 777 / 777 | 100.00 | CP002845 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IIHKBAED_1 | 0.0 | 1.0 | 0.0 |
| IIHKBAED_2 | 1.0 | 0.0 | 1.0 |
| IIHKBAED_3 | 1.0 | 0.0 | 1.0 |
| IIHKBAED_4 | 1.0 | 0.0 | 1.0 |
| IIHKBAED_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IIHKBAED_1 | 435673 | 437874 | False | Siphoviridae | VOG4553, VOG0204, VOG4589 |
| IIHKBAED_1 | 462401 | 493024 | False | Siphoviridae | VOG2142, VOG0189, VOG0822, VOG9874, VOG11003, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG5088, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502 |
| IIHKBAED_1 | 509111 | 534570 | True | Siphoviridae | VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG6154, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG0221, VOG0221, VOG0221 |
| IIHKBAED_1 | 1944855 | 1961435 | True | Siphoviridae | VOG5148, VOG5818, VOG0918, VOG7188, VOG5088, VOG5088, VOG0275, VOG4821, VOG9667, VOG2687, VOG0650, VOG8353, VOG4632, VOG4999, VOG5088 |
| IIHKBAED_1 | 2112304 | 2136961 | False | Siphoviridae | VOG3477, VOG0866, VOG9331, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG8438, VOG4705, VOG8917 |
Phigaro v2.4.0 (Database: Jan. 2024 release)