Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GKENPNGC_69 | 57180 | 57884 | WalR | 2.45e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GKENPNGC_73 | 768458 | 768261 | CspR | 1.51e-32 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKENPNGC_52 | 1.0 | 0.0 | 1.0 |
| GKENPNGC_54 | 1.0 | 0.0 | 1.0 |
| GKENPNGC_55 | 1.0 | 0.0 | 1.0 |
| GKENPNGC_56 | 1.0 | 0.0 | 1.0 |
| GKENPNGC_57 | 1.0 | 0.0 | 1.0 |
| GKENPNGC_58 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_59 | 1.0 | 0.0 | 1.0 |
| GKENPNGC_60 | 1.0 | 0.0 | 1.0 |
| GKENPNGC_61 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_62 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_63 | 1.0 | 0.0 | 1.0 |
| GKENPNGC_65 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_66 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_67 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_68 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_69 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_70 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_71 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_72 | 0.0 | 1.0 | 0.0 |
| GKENPNGC_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKENPNGC_68 | 99637 | 136597 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003, VOG9860, VOG0536, VOG2820, VOG3643, VOG9671, VOG0198, VOG4570, VOG3699, VOG10227, VOG0720, VOG4564, VOG5616, VOG1300, VOG1183, VOG4555, VOG0694, VOG1322, VOG4713, VOG1320, VOG9583, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4856, VOG0861, VOG7017, VOG0703, VOG4918 |
| GKENPNGC_72 | 228480 | 231052 | False | Siphoviridae | VOG4799, VOG0189, VOG0982 |
| GKENPNGC_73 | 5757 | 45602 | False | Siphoviridae | VOG7236, VOG0707, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG4548, VOG3777, VOG6545, VOG4606, VOG9759, VOG2820, VOG4039, VOG3643, VOG0044, VOG2338, VOG0198, VOG4694, VOG4570, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG4705, VOG1637, VOG0703 |
| GKENPNGC_73 | 1014121 | 1048154 | False | Siphoviridae | VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG10957, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10868, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG0531, VOG4570, VOG0198, VOG1563, VOG3643, VOG2820, VOG6238, VOG4693, VOG6623, VOG7735, VOG0025, VOG4799 |
Phigaro v2.4.0 (Database: Jan. 2024 release)