safety

PPRS ARGs VFs PGs Plasmid Prophage IS elements

ARGs	VFs	PGs	PPRS
5	0	0	5.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Comprehensive Antibiotic Resistance Database (CARD)

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
CLLJCEOC_2	1108575	1110549	tet(Q)	ARO:3000191	tet(Q)	100.00	97.56	Z21523.1
CLLJCEOC_13	438832	439566	ErmG	ARO:3000522	ErmG	99.18	100.00	L42817.1
CLLJCEOC_13	289872	291077	Mef(En2)	ARO:3004659	Mef(En2)	99.25	100.00	AF251288.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
CLLJCEOC_2	1108575	1110500	tet(Q)	Doxycycline, Tetracycline, Minocycline	100.00	100.00	Z21523
CLLJCEOC_13	438832	439566	erm(G)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	99.32	100.00	M15332
CLLJCEOC_13	441320	442769	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	91.88	98.91	AF227520
CLLJCEOC_13	442895	443719	mef(A)	Erythromycin, Azithromycin	93.58	67.65	AF227520

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
CLLJCEOC_13	289338	289847	lnu(AN2)	lincosamide nucleotidyltransferase Lnu(AN2)	EXACTX	100.00	100.00	WP_004308783.1
CLLJCEOC_2	1108578	1110500	tet(Q)	tetracycline resistance ribosomal protection protein Tet(Q)	EXACTX	100.00	100.00	WP_002560998.1
CLLJCEOC_13	289875	291077	mef(En2)	macrolide efflux MFS transporter Mef(En2)	BLASTX	99.25	100.00	WP_063853729.1
CLLJCEOC_13	438835	439566	erm(G)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G)	BLASTX	99.18	100.00	WP_063844787.1
CLLJCEOC_13	441315	442769	msr(D)	ABC-F type ribosomal protection protein Msr(D)	BLASTX	91.96	99.59	WP_000420313.1
CLLJCEOC_13	442886	443710	mef(A)	macrolide efflux MFS transporter Mef(A)	PARTIALX	98.91	67.40	WP_012102963.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

PlasmidFinder

Query ID	Begin	End	Plasmid	Query / Template	Identity	Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID	Prediction	Chromosome	Plasmid
CLLJCEOC_1	0.0	1.0	0.0
CLLJCEOC_2	0.0	1.0	0.0
CLLJCEOC_3	0.0	1.0	0.0
CLLJCEOC_4	0.0	1.0	0.0
CLLJCEOC_5	0.0	1.0	0.0
CLLJCEOC_6	1.0	0.0	1.0
CLLJCEOC_7	1.0	0.0	1.0
CLLJCEOC_8	0.0	1.0	0.0
CLLJCEOC_9	1.0	0.0	1.0
CLLJCEOC_10	0.0	1.0	0.0
CLLJCEOC_11	0.0	1.0	0.0
CLLJCEOC_12	0.0	1.0	0.0
CLLJCEOC_13	0.0	1.0	0.0
CLLJCEOC_14	0.0	1.0	0.0
CLLJCEOC_15	0.0	1.0	0.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Phigaro

Query ID	Begin	End	Transposable	Taxonomy	pVOGs
No hit found

Phigaro v2.4.0 (Database: Jan. 2024 release)