Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MIFPOIHJ_54 | 423028 | 423732 | WalR | 1.10e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| MIFPOIHJ_55 | 282182 | 282379 | CspR | 5.90e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MIFPOIHJ_50 | 7762 | 8796 | rep38 | 1046 / 1104 | 82.70 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MIFPOIHJ_38 | 1.0 | 0.0 | 1.0 |
| MIFPOIHJ_39 | 0.0 | 1.0 | 0.0 |
| MIFPOIHJ_40 | 1.0 | 0.0 | 1.0 |
| MIFPOIHJ_41 | 0.0 | 1.0 | 0.0 |
| MIFPOIHJ_42 | 0.0 | 1.0 | 0.0 |
| MIFPOIHJ_43 | 0.0 | 1.0 | 0.0 |
| MIFPOIHJ_44 | 0.0 | 1.0 | 0.0 |
| MIFPOIHJ_45 | 1.0 | 0.0 | 1.0 |
| MIFPOIHJ_46 | 0.0 | 1.0 | 0.0 |
| MIFPOIHJ_47 | 1.0 | 0.0 | 1.0 |
| MIFPOIHJ_49 | 1.0 | 0.0 | 1.0 |
| MIFPOIHJ_50 | 1.0 | 0.0 | 1.0 |
| MIFPOIHJ_51 | 1.0 | 0.0 | 1.0 |
| MIFPOIHJ_52 | 0.0 | 1.0 | 0.0 |
| MIFPOIHJ_53 | 0.0 | 1.0 | 0.0 |
| MIFPOIHJ_54 | 0.0 | 1.0 | 0.0 |
| MIFPOIHJ_55 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MIFPOIHJ_54 | 342890 | 353815 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG4606, VOG4632, VOG1581 |
| MIFPOIHJ_55 | 2397 | 41896 | False | Siphoviridae | VOG6495, VOG11003, VOG4552, VOG0807, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG6238, VOG4567, VOG0195, VOG0275, VOG4643, VOG2820, VOG3643, VOG2338, VOG0198, VOG4570, VOG4549, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG4605, VOG4599, VOG4705, VOG7888, VOG0054 |
| MIFPOIHJ_55 | 686399 | 712492 | False | Siphoviridae | VOG0275, VOG6495, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG1886, VOG4581, VOG0195 |
Phigaro v2.4.0 (Database: Jan. 2024 release)