Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDOFDCBI_82 | 3 | 866 | tet(C) | ARO:3000167 | tet(C) | 100.00 | 72.73 | AY043299.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JDOFDCBI_82 | 1 | 868 | tet(C) | Doxycycline, Tetracycline | 100.00 | 73.81 | AY046276 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDOFDCBI_82 | 3 | 866 | tet(C) | tetracycline efflux MFS transporter Tet(C) | PARTIAL_CONTIG_ENDX | 100.00 | 73.66 | WP_000841448.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JDOFDCBI_95 | 177901 | 177707 | CspA | 1.15e-27 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JDOFDCBI_76 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_77 | 1.0 | 0.0 | 1.0 |
| JDOFDCBI_78 | 1.0 | 0.0 | 1.0 |
| JDOFDCBI_80 | 1.0 | 0.0 | 1.0 |
| JDOFDCBI_81 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_83 | 1.0 | 0.0 | 1.0 |
| JDOFDCBI_84 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_85 | 1.0 | 0.0 | 1.0 |
| JDOFDCBI_86 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_88 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_89 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_90 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_91 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_92 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_93 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_94 | 0.0 | 1.0 | 0.0 |
| JDOFDCBI_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JDOFDCBI_88 | 4490 | 24820 | False | Siphoviridae | VOG0198, VOG8453, VOG1422, VOG4618, VOG10227, VOG0720, VOG4564, VOG0638, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801 |
| JDOFDCBI_91 | 79091 | 101311 | False | Siphoviridae | VOG1637, VOG9998, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG0866, VOG9312 |
| JDOFDCBI_92 | 87162 | 95867 | False | Siphoviridae | VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0198, VOG0204 |
| JDOFDCBI_92 | 223597 | 226654 | False | Siphoviridae | VOG4662, VOG0682, VOG4602, VOG9667, VOG6495, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)